>input_sequence_43735
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--------------ATGGATCCTCCGCAGATCGCCGGACGGGGAAGTGACGACCGCTTAAGCAAGCTCCGCGACGGCGTG
CTCGGCCACATCCTCTCCTTCCTCGACGCCAAGGAGGCCGGGCGCGCCGCTGCGCTCTCGTCGCGGTGGCGCCACGTCTT
CGCCAGCGTCCACACCGTCTCGCTGGAGCAGCCGGAAGAGCCCGTACCCGATTACGACTACGACGGCGGATACCGGCTCC
GTCGCTACGATCCGAACCAGCCAACGCCCTTCACCGTTGTCGTCAACAAGGCACTATTCGCCCGCTTCCGTCGGCCGGCC
ATTGCCGCCCCATCAGTGCCCCTGCGCGCGCTCCGCGTCACCATGGATGATTACGGCCGCGGGGACGCCTCCACGGTGAA
CGAGTGGGTCGCTTGCGCCTTCAGTTTAGCCGCCCCCGAGCTCGAGATCCAGCTTGACCTAGGCCAAGTCCCGGTCTGCA
AGCGACCCGACCCCTTCCGTGCCGCCGCCGCCACCGCCAATAGCGAATGTGATGATCACTCTGCCGGGAAGCAGTCTCCC
GTGCCCAAGGACGTCGACATCGATGACAAAGATGTCGCCTCCGGCGATGATGAGAGGGATCCTGCAGGGGAGCAGCCTCC
CGTGCCCAAGGGCGTCGACACCGATGACGAAGAAGATGTCGCCTCCAGCGATGACGAAGATGTGGCCTCCAGCGATGACG
AGAAGGGTTCTAGATCGCGGAGCTCGCCGTCCCCACGCGACTCGCAGTACACCGTCGTGAGGCAGCTCTTCTCCTTCGCG
GCATTGCGGTCACTCCGTCTTGGTAACTGCAGGCTCTGCCCGCCAGTGACCATCAGCCTGCCGGCTCTCGAAGCGCTCAG
CCTCACTCACGTCCCTGACGCAGAGGAGCACGTGCAGAAGCTCATCTCCGCCTGCACAAGCCTCAAGGACCTGACTCTCG
AGGCCTGCGGCACCGTCACCACGCTCTCCCTCCTCGACAACACAAGTCTCCATAGGCTCGTCCTCCGATGCTGCCACAAG
CTTGCCAATGTCACCATCAACGCTATGGAGCTCCACACGTTTGAGTACCGCGGTGCAGTTCCCGGCAACTCGTTCCTCAC
CGTGCCA---GGCGGCGGCTTCCCATCCATCACGTCATGCAAGATCGCCATCTGCACGGTCTGCCTCCTCGAGGAGGCCA
CGTCGGAGGAGCAGCTCGCCAT-GCTCGGTTCGTTCCTACAGCCGTTCACGTCCACAAAACACCTTCACCTATGCGCCGC
CCGCATGGGCTCCTGCTTCGTGGCGCTCGACTTGTTCCAGGCCCTCCGGCACCTCCAGCTAAATGGGCGTGTGACAAACA
GCGATGTAGCCGCCGCCGCTGC------GACCAGCACAATCCTCCAGCGGGCCACGAACCTGGAGACGCTGACCCTGTTC
TTCGAGACCGGGCCTCACGAACTCGAGACTCGCGTCAGCGGCCTGCGCTACTGCAGCAACCGCAGAAAAGGTGAGCTCCT
GGACGCGCATCACCTCCACTACAGCAAGTACGACACCCTCGACTTGGCGGGCGT------------GCCGATCCCACGGT
GCCTGGGGAGCAGCGTGAGAAGGATCAACCTGCTGCATTACCAAGGCGGCAGAGCGCAGAGGGCGCTCGCCAGGTACTTG
CTCCGCAACGCTCTGGTGCTCGACAAGCTCTACTGCGAGTTGGAGGAGGGGCCACTGTGGATCCAGGAGGAATTGGTGCG
GGAGATGGAAGGCTGGGTGGTGAACGAGAGTGCCAGCACGGTGTTCCACTGA----------------------------
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>chr3B_1_TraesCS3B01G494900
TGCATTCAAAA------AACAGAAACAAA-AAAAAGTTTATGAAATTT--TACCTTGTGGGCT---------ACACCTTG
TGCGCGTCGGCCGCCGACTCAACAAGT-GAGCTCACCGTCGCTTCGGTCGCCGCCGCGTCTGTCGCACACCCAACAAGCT
TCTTCCTCGACGGCCTAGA------GGAGCCGTCCGCCGCCTTGTTCTTCTTCGTGGACACCTTGCCCTTCTTCACCCAT
GCCGCATTTGGGAGTTTCGAGAGG-GGGGCACGTGGCATCACGACGGGCGCCGGCACCGGCGC------------GACGC
CACCCGCCGCCGAGGTCGTCCATGGCGGCATGAAAAGGCAGCGCGCGATGCTGGTGCTTGGAGGAGCACAGACGGTGGCG
AAGCCAAAGCTCCCCGCGCTAGGGTTTG------C---GGCGGCGGCGGCGGAGGGGTCGCGGCTGTAGGAAGGGGTGAG
GGGAGG--TGCCCACACGTCCGCCCATCGGGCCAATTCGCCGGCGGCGGCGCGGGCAGGGCGAAAGCGGCGGGGCGGAGA
GGGTGTGACGCGAGCGCTCGAGTGTTCGACGTGCAGAAGCGGGCACAACAAATAAACAGCGCGCGATGACGTTTCGGACC
GTGCGCCGAACTCTTTATACCGCGCATGTGGTTATTGCGCCTTTGCTGGAGCACCCGGAGCGGTTGCGCGCGCG--C---
TAAAAAGGAAAAATATCCAGCGCGGTGCTTATATAGCGTGGCTGTTGGAGATGCTCTTACCAGCTGCGAGCAAGGTCACC
GGGCTGGGCCGGCGATGGGAAACATCACAAATTTGCCACTGAATTTTTCAGAGAGATGCGAAACAAATTTGGTCGGAAGC
CCAGCCCACGTAGAACTAGGTAAAAAGAACTCGTATACGTATACGTATATATCGAATTTACCCCTAAATTTAAAAAATCG
TATATATGGAAAGGCAAAGTCGGTTATAAACCTTGGCAGATCCGCAAATCGCATGGATCCTCCGCAGATCAAACGCCGAC
GCCGCACGAGCACGATGGATCCTCCGCAGATCGCCGGACGGGGAAGTGACGACCGCTTAAGCAAGCTCCGCGACGGCGTG
CTCGGCCACATCCTCTCCTTCCTCGACGCCAAGGAGGCCGGGCGCGCCGCTGCGCTCTCGTCGCGGTGGCGCCACGTCTT
CGCCAGCGTCCACACCGTCTCGCTGGAGCAGCCGGAAGAGCCCGTACCCGATTACGACTACGACGGCGGATACCGGCTCC
GTCGCTACGATCCGAACCAGCCAACGCCCTTCACCGTTGTCGTCAACAAGGCACTATTCGCCCGCTTCCGTCGGCCGGCC
ATTGCCGCCCCATCAGTGCCCCTGCGCGCGCTCCGCGTCACCATGGATGATTACGGCCGCGGGGACGCCTCCACGGTGAA
CGAGTGGGTCGCTTGCGCCTTCAGTTTAGCCGCCCCCGAGCTCGAGATCCAGCTTGACCTAGGCCAAGTCCCGGTCTGCA
AGCGACCCGACCCCTTCCGTGCCGCCGCCGCCACCGCCAATAGCGAATGTGATGATCACTCTGCCGGGAAGCAGTCTCCC
GTGCCCAAGGACGTCGACATCGATGACAAAGATGTCGCCTCCGGCGATGATGAGAGGGATCCTGCAGGGGAGCAGCCTCC
CGTGCCCAAGGGCGTCGACACCGATGACGAAGAAGATGTCGCCTCCAGCGATGACGAAGATGTGGCCTCCAGCGATGACG
AGAAGGGTTCTAGATCGCGGAGCTCGCCGTCCCCACGCGACTCGCAGTACACCGTCGTGAGGCAGCTCTTCTCCTTCGCG
GCATTGCGGTCACTCCGTCTTGGTAACTGCAGGCTCTGCCCGCCAGTGACCATCAGCCTGCCGGCTCTCGAAGCGCTCAG
CCTCACTCACGTCCCTGACGCAGAGGAGCACGTGCAGAAGCTCATCTCCGCCTGCACAAGCCTCAAGGACCTGACTCTCG
AGGCCTGCGGCACCGTCACCACGCTCTCCCTCCTCGACAACACAAGTCTCCATAGGCTCGTCCTCCGATGCTGCCACAAG
CTTGCCAATGTCACCATCAACGCTATGGAGCTCCACACGTTTGAGTACCGCGGTGCAGTTCCCGGCAACTCGTTCCTCAC
CGTGCCA---GGCGGCGGCTTCCCATCCATCACGTCATGCAAGATCGCCATCTGCACGGTCTGCCTCCTCGAGGAGGCCA
CGTCGGAGGAGCAGCTCGCCAT-GCTCGGTTCGTTCCTACAGCCGTTCACGTCCACAAAACACCTTCACCTATGCGCCGC
CCGCATGGGCTCCTGCTTCGTGGCGCTCGACTTGTTCCAGGCCCTCCGGCACCTCCAGCTAAATGGGCGTGTGACAAACA
GCGATGTAGCCGCCGCCGCTGC------GACCAGCACAATCCTCCAGCGGGCCACGAACCTGGAGACGCTGACCCTGTTC
TTCGAGACCGGGCCTCACGAACTCGAGACTCGCGTCAGCGGCCTGCGCTACTGCAGCAACCGCAGAAAAGGTGAGCTCCT
GGACGCGCATCACCTCCACTACAGCAAGTACGACACCCTCGACTTGGCGGGCGT------------GCCGATCCCACGGT
GCCTGGGGAGCAGCGTGAGAAGGATCAACCTGCTGCATTACCAAGGCGGCAGAGCGCAGAGGGCGCTCGCCAGGTACTTG
CTCCGCAACGCTCTGGTGCTCGACAAGCTCTACTGCGAGTTGGAGGAGGGGCCACTGTGGATCCAGGAGGAATTGGTGCG
GGAGATGGAAGGCTGGGTGGTGAACGAGAGTGCCAGCACGGTGTTCCACTGATACTTGCACTCCTACATCAGTAGGAACA
TGAACACTTGTGCCTACACTTGTCTTAAGCACAATTATGAGTCGTACTGAGCATGGGCATAATTCATGCTGCACATGTGG
AAACAAGTCTTACCCACCCTTTCTATATACTCCCTCCATCCCAAAATTTAAGCACCTCTAGTCTTTCCATAAGTAAAACT
ATCTTGAGGTTGAACGTGTTTCGTAGAGAAGAGTATTATCAACATATATCACAACAAAGAAGTGTAATATGCTTTATAAT
GGAATCTAGTGATGCTAGTTTAGTATCACAAACATTGTTATTTTTTCTGTAAGTTCGGTCAAACTTGAGAGGTTTGACTT
GGGGCAACGCTAAAAATACTTATATTTTGGGACAAGGGGGTATACAAGATGAAAGTCATAAATG----------------
-GTGACACAGTTACTTATAGATGATTAAATGAGATGAAAAGGCAATACTCTACGTTTAGTCTTCAATGATGGCTTCCATC
TGCTGCTTAACGTAGCTAACAACTCGACGTTCGTTTCCACATAACACAAAGCACATAGATGACATGGGGCATAACTCATG
GTACTCTAAGAGCTAAGAGTAATCAATCATAAATCCTAGATGGATGTTGTACTAGTGGCACACGACAAATTCGGAGCACC
ACAATCTATGTCATATAGCAACCAAACTTAGGAATGACCCAGTTGCTGGCGAGGAACGCAAGGCTACTCCTTCCACATAG
GTAATAATAAGTGCCTTGGGCCTGAAAGCATTAGAGATAACATGTTTCAGTAAGTTGGCAAATAAATAAATGTATAAATT
AGAAAAAAAAACTGCATGTAAGTTCAGGATTTGTGGGAGAGTAAGCTTAAAGCAGTGCATACACACCAAGGGAACCAGTT
CCAATCGAAATAATTATGTTCTTTCCTTTCATAAATAAATAAATAAATAATTGAAACACATGACGCATCAAGTACACAGC
AGCCACTGTATATGAGAGTAACCAATGGA
>chr3D_1
TGCATTCAAAA------AACAACAACAAC-AAAAAGTTGGCGAAATTTTATACCTTGGGGGCATTTCATCAACCACCTTG
TGCGCGTCGGCCGCCGGCTCAACAAGT-GAGCTTGCCGACGCTTCAGTACCCGCCGCGTCCGTCACACGCCCTGCAAGGT
TCTTCCTCGACGGCTTAGA------GGAGCCGTCCGCCACCTTGTTCTTCTTCGCGGATACCTTGCCCTTCTTCACCCGT
GCCGCATTTGGGAGCCCCGAGAGG-GGGGCACGTGGCTTCATG------GCGGGCGCCGGCGC------------GACGC
CACCCGCCGCCGAGGTCGACCGTTGCGGCATGAAAAGGCCGCACACGATACCGGTGCTTGGAGGAGC-CCGGCGGAGGCG
AAGCCAAAGCTCCCCGCGCTAGGGTTTG------C---GGC------GGCGGAGGGGTCGCGGGTGTAGGAAGGGGTGAG
GGG-GG--TGCCGGCGCGGCTGTCTATCGGGTCAATTCGCCGGCGGCGGCGCGGGTGGGGCGAAAGTGGCGCGGCGGAGA
GAGTGCGGCGCGAGCGCTCGAGTGTGCGGCGCGTGGAAGCGGGTGCACCAAATAAACGGCACGCGATGGCGGTTCGGACC
GCGCACTGAACTCTTTATGCCGCGCGCGCGGTTATTGCGCCTCCGCTAAAGCTCGCTTAGCGATTGCGCG--CG--C---
TAAAAACCACAAATTTGCGGTGCGGAGTTTATATAGCGCGGCTGTTGGAGATGCT-------------------------
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>chr6D_1
TGCACTCAAAA------AACAAAAACAAA-AAAAAATTGGCGAAATTT--TACCTTGTGGGCATTTCATCGAACACCTTG
TGCGCGTCGGCCGCCGGCTCAACTAGT-GAGCTCGCCGGCGCTTCGGTCGCCGCCGCGTCCGTCGCACGCCCTGCAAGCT
TCTTCCTCGACGGCCTAGA------GGAGCCGTCTGCCGTCTTGTTCTTCTTCGCGGGTACCTTGCCCTTCTTCGCCCGC
GCTGCATTTGGGAGCTTCGAGA-G-GGGGCACGTGGCTTCACG------ACGGGCGCCGGCGC------------GACGC
CACCCGCCGCCGAGGTCGTCCGTGGCGGCATGAAAAGGCCGCGCACGATGCCGGTGCTTGGAGGAGCACCGGCGGAGGCG
AAGCCAAAGGTCCCCGTGTTAGGGTTTGCGGTGGC---GGC------GACGGAGGGGTCGCGGGTGTAGGAAGGGGTGAG
GGG-GG--TGCCGGCGCGTCCGTCCAGCGGGCCAATTCGCCGGTGGCGGCGCGGGCGGGGCGAAAGTGGGGCGGCAGAGA
GAGTGCGGCACGAGCGCTCGAGTGTGCGGCGCGCGGAAGCGGGCGCACCAAATAAACGGCGCGCGATGACGTTTTGGACC
GCGCACTAAACTCTTTATGCCGCGCACGCGGTTATTGCGCCTCCACTGGAGCTTGCTGAGCGGTTGTGCGCGCG--C---
TAAAAACCAAAAGTTTCCGGCGCGGCGCTTATATAGCG------------------------------------------
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>chr6D_1
TGCATTCAAAA------AATGACAACAACAAAAAAGTTGGTGAAATTTTATACCTTTGGGGCATTTCCTCGAACACCTTG
TGCGCGTCGGCCGCCGGCTCAACAAGT-GAGCTCGCCGGCGCTTCGGTAGCCGCCGCGCCCGTCGCACGCCCTGCAAGCT
TCTTCCTCGACGGCTTCGAGGAGCCGGAGCCGTCCGCCGCCTTGTTCTTCTTCGCGGATACCTTGCCCATCTTCGCCCGC
GCCGCATTTGGGAGCTTCGAGA-GGGGGGCACGTGGCTTCACG------GCGGGCCCCGGCGC------------GACGC
CACCCGCCGCCGAGGTCATCTGTGGCGGCATGAAAAGGCCGCGTGCGATGCCGGTGCTTGGAGGAGCTCCGGCAGAGGCG
AAGCCAAAGCTCCCCGTGCTAGGGTTTGCGGCGGCGGCAGC------GGCGGAGGGGTCGCGGGTGTAGGAAGGGATGAG
GGG-G---TGCCGATGCGGGCGTCCATTGGGTCAATTCGCCGGCGACGGCGCGGGCGGGGCGAAGGTGGCGCGGCGGAGA
GAGTGCGGCGTGAGCGCTCGAGTGTGCGGCACGCGGAAGCGGGCGCACCAAATACACAGCGCGCGATGGTGATTCGTACC
GCGCGCCCAACTCTATATGTCGCGCGC----TTATTGCGCGTCCGCTGGAGCCCCTATATCGCTTGCGCGTGCA--C---
TAAAATGGAGAAATTTGCGGCGCGGTGCTTATTTAGCGCGGCTGTTGGAGATGCTCTTA---------------------
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>chr6B_1
TGCATTCAAAA------AACAACAACAAC-AAAAAGTTGGCGAAATTTTATACCTTGGGGGCATTTCATTGAACACCTTG
TGCGCGTCGGCTGCCGGCTCAACAAGT-GAGCTCGCTGGAGCTTTGGTAGCCGCCGCGTCCGTCGCACGCCCTGCAAGCT
TCTTCCTCGACGGCTTAGA------GGAGCCGTCCGCCGCTTTGTTCTTCTTCGCGGATACCTTGCCCTTCTTCGCCCAT
GCCGCATTTGGGAGCTTCGAGA-GGGGGGCACGTGGCTTCACG------GCGGGCGCCGGCGC------------GACGC
CACCCGCCGCCGAGGTCGTTCGTGGCGGCATGAAAAGGTCGTGCGTGATACCGGTGCTTGGAGGAGTACCGGCGGAGGCG
AAGCCAAAGCTCCCCGCGCTAGGGTTTAT---GGCGGCGGC------GGCGGAGCGGTCGCGGGTGTAGGAAGGGGTGAG
GGG-GG--TGCCGGCGCGGCCGTCCATCGGGTCAATTCGGCGGCGGTGGCACGGGTGGGGCGAAAGTGGTGCGACGGAGA
GAGTGCGGCGCGAGCGCTCGAGTGTGCGGCGCGCGGAAGCGGGCGCATCAAACAAACGGCACGCGGTGGCGTTTCGGACC
GCGCGCTTAACTCTTTATGCCGCGCGCACGGTTATTGCGCCTCCGCTGGAGCTCGGTTAGCGATTACGTGGGCG--C---
TAAAAACCACAAATTTGCGGCGCGGCGCTTATATAGCGCGGCTGTTGGAGATGCTCTTAC--------------------
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>chr4D_1
TGCACTCAGAA------AACAACAACAAC-AAAAAGTTGGCGAAATTTTA--CCTTGTGGGCATTTCATCAAACACCTTG
TGCGCGTCGGCCGCTGGGTCAACAAGT-GAGCTCGCCGGCGCTTCGGTCGCCGCCGCGTCCGTCGCACGCCCTGCAAGCT
TCTTCTTCGGCCGCCTAGA------GGAGCCGTCCTACGCCTTGTTCTTATTCGCGGACACCTTGCCCTTCTTCGCCCGC
GCCGCATTTGGGAGCTTCGAGA-GGGAGGCACGTTGCTTCACG------GCGGGTGCCGGCGC------------GACGC
CAACCGCCGCCCAGGTCGTCCGTGGCGGCATGAAAAGGCCGCGCGCGATGCCGGTGCTTGGAGGAGCACCGGCGGAGGCG
AAGCCAAAGCTCCCCGCGCTAGGGTTTGTGGCAGC---GGT------GGCGAAGGGGTCGCGAGTGTAGGAAGGACTGAG
GGG-GA--TGTCGGCGTGTCCTTCCATCGGGCGAATTCGCCGCCGCCGGCACGGGCGGGGCGAAAGCAACGCGGCGGAGA
GGGTGCAGCGCGGGTGCAAGAGTGTGCAGCGCGCGGGAGCAGGCGCAGCAAATAAACGGCACGCAATGGCGTTTCAGACC
GCGCGCTGAACTACTTATGCCGCACGCGCAGTTATTGCGCCTCCGCTGGAGCTCCCGGAGCGGTTGCGCG--CG--C---
TAAAAACCCAAAATTTCCAGCGCGACGCTTATATAGCGCGGCTGTTGGAGATGCTCT-----------------------
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>chr1A_1
TGCATTCAAACAACAACAACAACAACAAC-AACAAGTTGGCGAAATTTTA--CCTTGTGGGCATTTCATCGAACACCTTG
TGCGCGTCGGCCGCCGGCTCATCAAGT-GAGCTCGCCGACACTTTGGTCGCCGCCGCGTCCGTCGCACGCCCTGCAAGCT
TCTTCCTCGACGGCCTAGA------GGAGCCGTCCGCCACCTTGTTCTTCTTCGCCGACACCTTGCCCTTCTTCGCTCGC
TCCGCATTTGGGAGCTTCGAGA-GGGGGGCACATGGCTTCATG------GCAGGCGTCGGCGC------------GACGC
CACCCGCCGCCGAGGTCTTCCACGGTGGAATGAAGAGGACGCACGCGATGCCGGTGCTTGGAGGAGGACCGGCGGAGGAG
AAGCCAAAGCTTCCCGCGCTAGGGTTCGCGGCGGC---GGC------GGTGGAGGGGTCGCGGG------AAGGGGTGA-
GGG-GG--TGCCGGCGCGTCCGTCCATCGGGCCAATTCGCCAACAGCGGCGCGGGC-GGGCGAAAGTGGCGCGGAGGAGA
GGGTGCGGCGCGAGCGCTCGAGTGTGCGGCGCGTGGAAGCGGGCGCACCAAATAAGCGGCGCACAATGGTGTTTCGGACC
GCGCGTTGAACTCTTTATGCCGTGCGCGCGGCTATTGCGCCTCTGCTGGAGCTTGCTGAGCGGTTGCGCG--CGTGC---
TAAAAACCAAAAATTTCCA--GCGGCGCTTATATAGCACGGCTGTTGGAGATGCTCT-----------------------
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>chr5D_1
TGCATATAAAA------AACAACAACAAC-AAAA-GTGGGTGAAATTTTA--CCTAGTGGGCATTTCACCGAACACCTTG
TGTTCGTCGGCCGCCAGCGCAACAAGT-GAGCTCGCCGGCGCTTCGGTCGCCGCCGCATCCGTCGCACGCCTTGCAAGCT
TCTTCTTCGGCCGCCTAGA------GGAGCCGTCCGCCGTCATGTTCTTCTTCCCAGACACCTTGCCCGCCTTCGCCCGC
GCCGCATTTGGGAGCTTCGAGA-GGGGGGCACGTGGCTTCACG------GCGGGCGCCGGCGC------------GACGC
CACCCGCCGACGAGGTCGTCCGTGGCGGCATGAAAAGGCCGCGCGCGATACCGGTGCTTGGAGGAGCACCGGCGGAGGCG
AAGCCAAAGCTACCGGCGCTAGGGTTTGCGGCGGCGGCGGC------GGCGGAGGGGTCGTGGGTGTAGGAAGGGGTGAG
GGG-GG--TGTCGGCTCGTCCGTCCATCGGGTGAAATCGCCGGCGGCGGCGCGGGCAGGGCGAAAGCGGCGCGGCGGAGA
GGGTGCGGCGCGGGCGCTCGAGTGTTCAGCGCGCGGAAGCGTGGGCACGAAATAAGCGGCGCGCGATGCCGTTTCAACCC
CCGCGCTAAACTACTTATCCCGCGCGCGCGGTTTTTGCGCCTCTGCTGGAGCGCCTGGAGCGGTTGCGCGTA----C---
AAAAACACAAAATTTTCTGGCGCGGCGCTTATATAGCGCGGCTGTTGAAGATGCTCT-----------------------
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>chr1D_7
----------CAACAACAACAACAACAAC-AAAAAGTTGGCGAAATTTTA--CCTTGTGGGCATTTCATCGAACACCTTG
TGCGCGTCGGCCGCTGGCTCAACAAGT-GAGCTCGCCGGTGCTTCGGTCGCCACTGCGTCCGTCGCACGCCCTGCAAGCT
TCTTCCTCGACGGCCTAGA------GGAGCCGTCCGCCGCCTTGTTCTTCTTCGCGGATACCTTGCCCTTCTTCGCCCGC
GCCGCATTTGGGAGCTTCGAGA-GGGGGGCACGTGGCTTCACG------GTGGGCGCCGGTGC------------GTCGC
CACCCGCCGCCGAGGTTGTCTGTGGCAGCATGAAGAGGCCGCACGCGATGCCGGTGCTTGGAGGAGCACCGGCGGAGGCG
AAGCCAAAGCTCCCCGCGCTAGGGTTTGCGGCGGC---GGC------GGCGGAGGGGTCGCGGGTGTAGGAAGGGGTGAG
GGG-G---TGCTGGCGCGTCCGTCCATCGGGCCAATTCGCCGGCGGCGGCGCGGGTGGGGCAAAAGTGGCGCGGCGGAGA
GGATGCGGCGCGAGCGCTCGAGTGTACGGCGCGCGGAAGCTGACGCACCAAATAAACGGCGTGCGATGGCGTTTCGCACC
GCGCGCTGAACTCTTTATGCTGCGTGCGCGGTTATTGCGCCTCCGCTGGAGCTCGCTGAGCGGTTGCGCG--CG--CGCT
TAAAAACCAAAAATTTCTGGCGCGGCGCTTATATAGCGCGGCCGTTGGAGATGCTCT-----------------------
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>chr3D_68
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-----GTCGCGCGCCGCATCATCATGTGGAGCTCGCCGGCGCTTCGGTCGCCGCCGCGTCCGTCACACGCCCTGCAAGCT
TCTTCCTCGACGGCCTAGA------GGAGCCGTCCGCCGCCTTGTTCTTCTTTGCGGACACCTTGCCCTTCTTCGCCCGC
GTCGCATTTGGGAGCTTCGAGA-GGGGGGCATGTGGCTTCACG------GCGGGCGCGGGCGCCGGCGCTGGCGCGACGC
CACCCGCCGTCGAGTTCGTCTGTGGCGGCATGAAAAGGCCGCGTGCGATGCCGGTGCTTGGAGGAGCACCGGCGGTGGCG
AAGCCAAAGCTCCCCGCGCTAGGGTTTGCGGCGGC---G---------GCGGAGGGGTCGCGGCTGTAGGAAGGGGTGAG
AGG-GGGATGCCGGCGCGTCCGTCCATCGGGCCAATTCGCCGGCGGCGGCGCGGGCGGGGCAAAAGCGGCGGGGCGGAGA
GGGTGCGGTGCGAGCGCTCGAGTGTGCGGCGCGCGGAAGCGGACGCAGCAAATAAACGGCGCGCGATGACGTTTCGGACC
GCGCGCTAAACTCTTTATGCCGCGCACGCGGTTATTGCGCCTCCGCTGGAGCTCCCGGAGCGGTTGCGCG--CG--C---
TAAAAAACGAAAAATTCAAACGCGGCGTTTATATAGCGCGGTTGTTGAAGATGCTCT-----------------------
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>chr3D_967
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------------------------------------------------------------TCCGCAGATCAAACGCCGAC
GCCGCAGGAGCACGATGGATCATCCGCATATCGCCGGACGGGGGCATGACGACCGCTTAAGCAAGCTCGGCGACGGCGTG
CTGGGCCACATCCTCTCCTTCCTCGATACCAAGGAGGCCCTGCGCGCCGCTGCGCTATCGTCGCGGTGGCGCGACGTCTT
CGCCAGCGTCCACACCGTCTCGCTGGAGCAGCCGGAAGAGCCCGTCCCAGATTACGACTACGACCGCGGATACCGGCTCC
AGCACTACGACCCGAAACGGCCGACGCCCTTTACCACCATCGTCAACGGGGCAGTAAACGCCCGCTTCCGCCAGCCGGCC
CTTGCCGCCCCATCAGTGCCCCTGCGCGCGCTCCGCGTCACCATGGATGATTACGGCCAAGGTGACGCCTCCACGGTGAA
CCAGTGGGTCGCTTACGCCTTGAGGTTAGCCGCCCCCGAGCTCGAGATCCAGCTTGACCTAGGCCAAGTCCCCGTCTGCA
AGCGTCCCGACCCCTTCCGTGCCGCCGCCGCCACCGCCAATAGCGGATGTGATGATCACTCTGCCGGGAAGCAGTCTCCC
GTGCCCAAGGACGTCGACATCGATGACAAAGATGTCACCTCCGGCGATGATGAGAGGGATTCTGCCGGGGAGCAGCCTCC
CGTGCCCAAGGGCGTCGACACCGATGACGAAGAAGATGTCGCCTCTAGCGATGACGAAGATGTGGCCTCCAGCGATGACG
AGAAGGATTCTAGATCGCCGAACTCGCCGTCCCCACACGACTCTCAGTACACCGTCGGGAGGCAGCTCTTCTCCTTCGCC
GCATTACGGTCACTCCGTCTTGGTAACTGCAGGCTCTGCCCGCCAGTGGCCATCAGCCTGCCGGGTCTCGAAGCGCTCAG
CCTCTCACACGTCCCTGACGTAGAGGAGCACGTGCAAAGGCTCATCTCCGCCTGCACAAGCCTCAAGGACCTGACTATCG
AGGCCTGCGGCACCGTCACCACGCTCTCCCTCCTCGACAACACACGTCTCCATAGTCTCGTCCTCCGGTGCTGCCACAAG
CTTGCCGGTGTCACCGTCAACGCTTTGGAGCTCCAGAAGTTTGAGTACCGTGGTGCAGTTCCCGGCAACTCGTTCCTCAC
CGTGCCA---GGCGGCGGCTTCCCATCCATCACGTCGTGCAAGGTCGCTGTCTGCACAGTCTGCCTCCTCGAGGAGGCCA
CGTCGGAGGAGCAGGCTCACCACGCTCGGGTCGTTCCTACAGCCGTTCACGTCCACGAAACACCTGCACCTGTGCGCCGC
CCGCATGGGCTCCTGCTTCGTGGTGCTCAACTCGTTCCCGGCCCTCCGGCACCTCCAGCTAAACGGGTGTGTGACAAACA
GCGATGTAGCCACCGCCGCTGC------GACGAGCACAATCCTCCAGCGGGCCACGAAACTGGAGACGCTGACCCTGTTC
TTCGAGACCGGGCCTCATGAACTCGAGACTCGTGTCAGCAGCCTGCGCTACTGCAGCAACCGCAGAAAAGGTGAGCTCCT
GGACGCGCATCACCTCCACTACAGCAAGTACGACACCCTTGACTTGGCGGGCCT------------GCCGATCCCGCGGT
GCCTGGGGAGAAGCGTGAGAAGGATCAACCTGCTGCATTACCAAGGCGGCAGAGCGCAGAGGGCGCTCGCCAGGTACTTG
CTCCCCAACGCTCTGGTTCTGGAGAACCTCTACTGCGAGTTGGAGGAGGGGCCATTCTGGATCCAGAAGGAATTGGTGCA
CGAGATGGATGGCTGGGTGGTGAGCGAGAGAGCCAGCAAGGTGTTCCACTGATACTTGCACTCCTACATCAGTATGAACA
TGAACACTTGTGCCTACACTTGTCTTA-GCACAATTTTGAGTCGTACTGAACATGAGCATAATACATGCTGCATATGTGG
AAAC-AGTCTTACCCACCCTTCCTATATACTTCCTCCATCCCGAAATTTAAGCACCTCTAGTCTTTCCATAAGTAAAACT
ATCTTGAGTTTGAATGTGTTTCGTAGAGAAGAGTATTATCAACATATATCACAACAAAGAAGTATAATATGCTTTATAAT
GGAATCTAGTGATGCTAGTTTAGTATCACAAACATTGTTATTTTTTCTGTAAGTTCGATCAAACTTGAGAGGTTTGACTT
GGGGCAACGCTAAAAATACTTATATTTTGGGACAAGGGGGTATGCAAGATGAAAGTCATAAATGTTCATCCAGTGATCTA
GGTGACACAGTTACTTATAGATGATTAAATGAGATGAAAAGGTAATACTCTACGTTCAGTCTTCAATGATGGCTTCCATC
TGTTGCTTAACGTAGCTAA-------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------
>chr3D_1036
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------CGACCGCCTGAGCGACCTCGACGACGGCCTG
ATCGGCCACATCCTCTCCTTCCTCGACGCCAAGGAGGCCGCGCGCGCCGCGGCGCTCTCGTCGCGGTGGCGCGACGTCTA
CGCCAGCGTCCACACCGTCTCCCTGGAGCTGCCGGAACGGCCACTCC------------ACGACGGCCTCACCGATCTCA
CGTACATCCTCAGAATTTTGCG---GCCCTTCGTCGCCGGCGTCACCGCCGCCCTCTTCGCCCGCGACCGCCGCGCGGCC
CCCGCCGCGGCGTCGGTGCCCCTGCGCGCGCTCCGCGTCTGTATGG------AAGGCAGCGTAGACTACTCCACGGTGGG
CTTGTGGGTCACCCACGCGCTGAGGCATGCCGCCCCCGGCCTCGAGCTCGACCTCCGCCTCGGCCGTGACCCCGTCTGCT
GGGGCATCGACCGGAAA--------CGCGTCCACCGCCGGCCTGCCGTTTCCCCATATCGGAACCACGCCGTCGGCGGGA
CGCCTCTTAACTTGGACCCCGTCGATCCTTCCCTCCCCGCG---------------------------------------
----------------GACGCCAACGATGAAGATGATGCCGTCTCTAGCGATGACGAGATGCCTTCTGGATTTGGTAATC
-----GGCTGTACATCGGGGAACTCCC-------------------------------GAGGCCGCTATTCTCCTGCGCG
GCGCTGCGATCGCTCCGCCTCGGCTCCTGCTGTCTCTCCACGCCGGAGGCCGTGAGCCTGCCGTCGCTGGAGGTGCTCCG
CCTTACCCACGTCCGCGATGAGGAGGAGCACGTGCAGAGGCTCATCTCGGCCTGCCCGCTGCTCGCGGACCTGATGGTCG
AGGCCTGCGGCACGGTGACCGCGCTCTGCCTTCTCGACAACACGCGTCTCCGCAGGCTCGCCATACGGTTCTGCGACAAC
CTGGCCACTGTAGCCATCGGCGCATCACAGCTCCTATCCTTCGAGTATCTCGGCGCCATCCCTGATAACTCGTTCCTCGC
CGGAGGCAGTGGCGGCGGCTTTCCAGCCATCACGTCGGGCAAGATCGACACCTACGCTGCCTTTCCTGACGAACC-----
-------GGAGGACCTCGTCAA-GCTCAGTTCCTTCCTGCAGTTGTTCGTTGCCACAAAACATCTCCACTTGTGCTCCAC
TCGGATGGGCTCCTGTTTCGTGAACCTCCCTGAGTTCCCGAGCCTCACCCACCTCGAGCTCAATGGACGCGTACTTCAAT
GTGACGATCCCGCCTTGGCCATTGCCGTGACGTGCACAATCCTCAGTCAGGCCCCTAACCTGGAGCTACTGACCCTGGTA
TTCCAAGCAGCGCCTCAAGATCAAGAGTCGCAGCAGTGCAACGGCCCCTACCGTGG---CCGCATCGAGGGGGAGCTCGT
CGACGTGCACCTTCTCCACTACGACAAGTACGACACCATTGACTATGCGCTGCTGATGGTTAACACGCCGGTCCCGCCCT
GCCTCGTGAACCGAGTGAGCAAGATCGAGTTGGTGCATTACCAAGGCGGCAGAGCGCAGAGGGCGCTGGCCAAGTTCTTG
CTCGGCAACGCTCCTGCGCTCAAGATGCTCTATTGTGGATTTGCGGAGGGCCCGGAGTGGATTCAGATGCAATTGATGCG
TGAGATTCAAGGCTGGGTGATCAATGAGACAGCTAGCAAGGAGTTCC---------------------------------
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-----------------------------
>SNPs
---------------------S----------------SS----------------------S-----------------
----------------S-----------------S---S---------------------S-------S---SS------
------------------------------------------------------S-------------------------
--------------S----------------------S-----SSSSSS--S---S------------------------
---------------------------------------S-----------S-----------------S-S--------
-----------------------------------------SSSSSS---------------------------------
---S--------S--S------S---------------------------------------------------------
-----S-S--------------------S--S--S---------S--S--------------------------------
-S----------------S-------S-S-------------S---------S---------------------------
--------------S-----------------------S---------------------SSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------
------S--------------S------S--------------SSS----------------------S-----------
----------------------------------------S-------------------------------S-------
---------------------------------------------S--S-------------------------------
SS-S------S-----S-S---S-------------SS---------SS---------------------S---------
S-------------------------------------------------------------S-----------------
-S------------S------S--S-----------------------------------------------S-------
----S----------------------------------------S----------------------------------
------------------------------------S-----------------------S----S--------------
---------------------------------------------S----------------------------------
---------------------S--------------S------S-------------S----------------------
------------------------------------------------S-------------------------------
------S-------------S-----------------S-------------------------------------S---
--------------------------------------------S----------------------S------------
-------S----------------S----------S--------------------------------------------
------------------------------------S--------------------S----------------------
------------------S--S-------------------------------------------S-----S--------
-----------------------S----S---S-----S-----------------------------------------
-------------------------------S------------------------------------------------
-----------------S--------------S------S----------------------------------------
---------------------------------------S------------S----------------------S----
--------------------------------------------------------------------------------
-----------------------S------------------------------S-----------S-------------
S-----------------------------S-------S-----------------------------------S-----
---------------------------S--------S-------------S----S-------S---------S------
----S----------------S---------S----------S-------------------------------------
--------S-----S------------------------------------------------S----------------
---------------------------------------------------------S----------------------
-------------------------------------------S------------------------------------
------------------------------------------S-------------S-----------------------
--S----------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_1011
--------------------------------------------------------------------------------
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-------------------------------CTTGGCAGATCCGCAAATCG-----------------------------
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-----------------------------
>reverse_2259
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------CCATGCTCGGTTCGTTCCTA------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------
>forward_1016
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------CAGATCCGCAAATCGCATGG------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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-----------------------------
>reverse_2787
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
------------------------------------------------------------------GAGGAATTGGTGCG
GGAGAT--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------
>forward_2197
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------GCTTCCCATCCATCACGTCA-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------
>reverse_3824
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------------------------------CGCATCAAGTACACAGC
AGC--------------------------
