>input_sequence_43684
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---ATGGCGATGACCGTGGAAGGTAAGGGATCTCTCTTCCTGCCCCCGACCCAGCTCCTATTCCCCGGGTGATCGGGCCG
AGCTCGCATTCGGGC--TGCTGCGGCGGGGGGATCGGGCGGCTAGGGTTCTTGCTG-GGGGCATGGGGTCGCGAATTGAC
GGGCCAGGGTGCGGGGGGATCCGATTGGTTGGTGCGGGTTGGTCGGAGCGCC-GTGCTGCGCCGGCCGGGCGGCTCTGCG
TAGGTAGGTAGCGTGGGCGAGGCTGGCACGGGGACAAAAATCAGTGCACGGCCTGATTTTGCCCAGTCAGATCAGTGCGC
TTTCCTTAGGGGAAACGGGGTC---AGCTGTGCTGCCAGGGACCTAGGTTTGCGTGGAACAGGGG----CCGTGATGCGT
CCACATCGTTTGCATCTTATCGATGGGCT---------------------------------------------------
--------------------------------------------------------------------------------
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------TAT--CCATTCTCATGAAT------------------------------------TAGTACGGTCCAGTTTCAG
CATTTATATTAGGTTCTTGCACTCTGAGCAGTTCTTGATAATATCAATCTTTCTTATATCTTGCAAATTGCTTCAAGTGT
TTGACGACTAACTTGTGTGTTCCTCGTCTGCTTTGCTTTCGTCCTTGC---TGCTGGATGCTGCTGTCAACTTACTCTTG
GCGTGTGTCTTCACAGTGTAAGTTCATTATTCTGCTTTCTCTTAACCATTGTTTTGCATTTGACAAGTGTGCCGTCTTAT
TAAAAATTTCTCTTACAGGCTCGCTGGACTTGCGTGTATGTTCTCCACGAGCGTTCTTTTGCAAATCCTGGTAAGCTAT-
-GTACATTCATGCCTAAAGCTCACTGAATCAGGTTTCTGAAAGATGGTACAGTGGCAGCAATTGTTTTACTCACTGTCAG
TTTCCAGTAACTTTGAGGACAACCTGACAGATTGGTTTCAAGTTTTGTTTCTACAATTCACTTATGCCCAGTATTCTATT
GTGTGATTGTGCCAAAGAGGCAAGGAATGTGCGGAAGAGTAATATTGTGACATAGTTGCTGGTCACTTCAGGGTTACTCT
TGTTATTCAGTTAGGAGTCCCACATGCTAGAAAAATCATCTTAGAGTT-GATGCACACAAAGATTGGTCTGATTGTATCG
ACATGCACAACTACTGTAGTAATTATTTTATATGGAGGTTATCGAGCAGCATCAGATTGCTATCCCTTCATTATTTGACC
AAGTTGTTACTTCCGAATTCAATGACTATTTATTTTCTTGGTGCAGGCATGTGCTTTGTACAACAACTGGTGGCCTATGT
TAGCAGGTGACTGCTAGTTTGTTATCCTCCTCAATCACTGTGAGCAAGTTCCTGTGGCTTTTCCACTGACGTTCTTGTGC
ATGCTTTTTCTGTTCTGCAGCACTCATGTATATCATTGTGCCAATGCCATGCCTGTTCTTTGGCGACGGATCCACACGGT
TCTTGAGTAGCGGAGAGGGTGGAGCGTAAGTTCTAAATTGATGATTCTCTTTCCTTTGGAGAAGTAGTAAACTGAACATG
TATATCAGCACAGCAGACATGATAGGCATTAGGCAATCACAACTTAGGATGCTGATCCACACATTTGCTACCATAACAGT
TATAATCAGACAGGGCATCTCATTTTTCAGCTGGATGAAAGCCGCAAAGTTCTTGACCGGCATGTCTGCCATGGGAAGCC
TCGCCATCCCGGCGATCCTGAGGCACGCTGGCCTGATCGAGACGGGGGCCATGTTCATCGAGTTCACCTCCTTCTTCATC
CTGGTGTGCACGGTTCTGTGCTTCCACAGGGCTACCCTGGACGAGGAGTGGTAA--------------------------
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------------------------------
>chr3A_1_TraesCS3A01G516800
GCTAGTAGTGTTTAACAGTCCCATGGAACAGGCTGACCAGCTATCACCTATCATCATATTCCATAAGCCACAACCACTAG
CTAAATCTCAATTTGAGCGCATCATCGAATTAGCTCTCTGTAGCATCATTTTACAGCTACAGTTGCTTCCCAGTTATCTA
CCATTGTTGGTCGCGACAATAAATTCAGACGGAAATGGTGGCAGCACGGATGCATTTCTTCCGACAGCAA---CTAGAAC
ATATGACTTTC------------------TGCGTATATCCAATCCAAAGGGGTGAAATGTCGGCAAGAATA----TATCT
ATCTATCTGTTTCTGTCGAGCAATC-ACATCAAGGGCAGTAGT---AAATCTTTAG----AGCGCGTGGCATTTGAGATT
GAGCGTGAGGAAGGAT---------------------GTACCTCGAGCGTGACGAGGCAGTTGTGGCCGAGGTCGAGGCG
CTCCAGGTTCTTGAAGCTCCCCAGGCACGACACCTATCCGGCAGCCACGCACAGCGACGACAGAGAGATAGATGAGCAAA
GCCGGCGAGCCACCGTTAAACTGACTGAAGCAGCCGGGACCGAGGCGGCCGGCGGGAGGCAGGGAGGATGAGGGCCCACT
TACGTCGGTGAAGGAGCGGTGGGAGAGGTCGAGGAACGTGGCGAGGCAGCCGGCGGGCGCCGCCTCCCTCGCCGTCTGCT
CCAGCGTCAGCCGCACCATGGCTGGCCTCCCTCCTCTTCGCCTCT----------CCGCCGCCGCCGCTGTTCCAAAAGC
CCAAGCAAGCAAACCCCTTCAGCCCCGAGATC-TCTTGCCCTAGCGCCCCAAC----------CAAAGCCCACCAAGGCT
TTCGG---------------G------------GCGGGCCCGTCCCACCAAATCCGGCCGGGCCCACCTGCCAGCGCGAG
ATGGTATCGGCA--------------------GGTCGCTCGGTCGGTCAGAGGAGTT-ATTGGAGTCGGAGAGGAGAGGA
AAGCAGGAGGAGGCGACAGGTGCTCGCCCGCCCCACCGCCGGGAAGACTCGCTCCGCCGCCCGCCGCCCGCCGCCCGCCG
GAGATGGCGATGACCGTGGAAGGTAAGGGATCTCTCTTCCTGCCCCCGACCCAGCTCCTATTCCCCGGGTGATCGGGCCG
AGCTCGCATTCGGGC--TGCTGCGGCGGGGGGATCGGGCGGCTAGGGTTCTTGCTG-GGGGCATGGGGTCGCGAATTGAC
GGGCCAGGGTGCGGGGGGATCCGATTGGTTGGTGCGGGTTGGTCGGAGCGCC-GTGCTGCGCCGGCCGGGCGGCTCTGCG
TAGGTAGGTAGCGTGGGCGAGGCTGGCACGGGGACAAAAATCAGTGCACGGCCTGATTTTGCCCAGTCAGATCAGTGCGC
TTTCCTTAGGGGAAACGGGGTC---AGCTGTGCTGCCAGGGACCTAGGTTTGCGTGGAACAGGGG----CCGTGATGCGT
CCACATCGTTTGCATCTTATCGATGGGCT---------------------------------------------------
--------------------------------------------------------------------------------
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------TAT--CCATTCTCATGAAT------------------------------------TAGTACGGTCCAGTTTCAG
CATTTATATTAGGTTCTTGCACTCTGAGCAGTTCTTGATAATATCAATCTTTCTTATATCTTGCAAATTGCTTCAAGTGT
TTGACGACTAACTTGTGTGTTCCTCGTCTGCTTTGCTTTCGTCCTTGC---TGCTGGATGCTGCTGTCAACTTACTCTTG
GCGTGTGTCTTCACAGTGTAAGTTCATTATTCTGCTTTCTCTTAACCATTGTTTTGCATTTGACAAGTGTGCCGTCTTAT
TAAAAATTTCTCTTACAGGCTCGCTGGACTTGCGTGTATGTTCTCCACGAGCGTTCTTTTGCAAATCCTGGTAAGCTAT-
-GTACATTCATGCCTAAAGCTCACTGAATCAGGTTTCTGAAAGATGGTACAGTGGCAGCAATTGTTTTACTCACTGTCAG
TTTCCAGTAACTTTGAGGACAACCTGACAGATTGGTTTCAAGTTTTGTTTCTACAATTCACTTATGCCCAGTATTCTATT
GTGTGATTGTGCCAAAGAGGCAAGGAATGTGCGGAAGAGTAATATTGTGACATAGTTGCTGGTCACTTCAGGGTTACTCT
TGTTATTCAGTTAGGAGTCCCACATGCTAGAAAAATCATCTTAGAGTT-GATGCACACAAAGATTGGTCTGATTGTATCG
ACATGCACAACTACTGTAGTAATTATTTTATATGGAGGTTATCGAGCAGCATCAGATTGCTATCCCTTCATTATTTGACC
AAGTTGTTACTTCCGAATTCAATGACTATTTATTTTCTTGGTGCAGGCATGTGCTTTGTACAACAACTGGTGGCCTATGT
TAGCAGGTGACTGCTAGTTTGTTATCCTCCTCAATCACTGTGAGCAAGTTCCTGTGGCTTTTCCACTGACGTTCTTGTGC
ATGCTTTTTCTGTTCTGCAGCACTCATGTATATCATTGTGCCAATGCCATGCCTGTTCTTTGGCGACGGATCCACACGGT
TCTTGAGTAGCGGAGAGGGTGGAGCGTAAGTTCTAAATTGATGATTCTCTTTCCTTTGGAGAAGTAGTAAACTGAACATG
TATATCAGCACAGCAGACATGATAGGCATTAGGCAATCACAACTTAGGATGCTGATCCACACATTTGCTACCATAACAGT
TATAATCAGACAGGGCATCTCATTTTTCAGCTGGATGAAAGCCGCAAAGTTCTTGACCGGCATGTCTGCCATGGGAAGCC
TCGCCATCCCGGCGATCCTGAGGCACGCTGGCCTGATCGAGACGGGGGCCATGTTCATCGAGTTCACCTCCTTCTTCATC
CTGGTGTGCACGGTTCTGTGCTTCCACAGGGCTACCCTGGACGAGGAGTGGTAAAGGCTCGCGCAAGGCCACAAGGAGTG
CCCGAGAGAAGAACGCCTGTTAGGATGTGGAAAAGAAATCCCTTGGTGGGAGGGAGCTAACGTGGAACT--GTGTACAAA
GAAGCGTGCTTCAAGCGCTTGACTACTGTATTTATGTATACGCGTACCCGAGATTCGGTAATCTAGTTGGTAATCTGTGC
TGAACCGGTCGTGTGAAGCATATATGATTCGGCGCAGTTGATTGACGCAAAGCAGTCTTTCTATGGTCGGTTTGACACTT
GTGCATTCAGAATCTGCACTTGCAGTATGGTACAAACTATTGGATGGAATGAAGTGACAATATTTTGTTTAGATGGTTGC
ACCTGAAGCCAAATTTGCTCAGTTATGTGTGCCTCAATTCTTTGGTTGTTTTT--------GTGTGATCTTCAGAGAACA
TTTTTTGGTGCAATCTTTGGAGAA---CTTTTTATTGTTGTTTGTGTGTGATCTCT--AGATAACATATTTTGGTTGTTT
GTGGGTGGTCTATAGAGAACTTGATAGAAGCAACGGTCTCTTGGATCCGTTGCCAACTCCACAAAACCTAGAATATACTT
TTCTACTGCTAAAATAAGAAGCGCAAGATCAATTATTCAGAGGTCTCTCGTTGTCCATCAGTCCATCTGTTCGTAGTTAC
TCTCATCATTTGGAAAGCTCCCTGACACCAGGAAATTGTGTACTGCTCCCTCCGTCCAAAAGTAAGTGTTGGAACACTTA
TTTT-GGAATGGAGGGAGTGCTGCATATTTTTTTTTTCTTTCGAAATGACAGATTCTCTGCCTTCATTAAGAAAAAAAGA
GGGAGTACTACACATACATTATCACTACTCTGAGAAGTTGCCTGTTAGCATATGAATCATGGATAGGCCGAAATATCTAT
ATGCTGGGACTCTGGAAGCTAAGACTGGTTTTTCACCCGGAAAATGTGTATACGTAACTCTACGAGTTGTGGTTGCCAAC
AATATATTTGCTAATACAGAAAACTAAACA
>chrUn_4
AGTAGAG----TTTACAGTCCCATGGAACAAGCAGAGCAGCTATCACCTATCATCATCATCCATAAGCCACAACAAGTTG
GTAAATCCTAATCTGAGCGCATCTTCGAATTAGCGCGCTGTAGCATCATTTTACACCTACAGTTGCTTCCCTGTTATCTA
CCATTGTTGGTCGCGAAAGTAAATTCAGACGAGAATGGTGGCAGCACGGATGCATTTCTTCCGACAACAAGAGCTAGAAC
AAGTCGACAACGGCGGCGGCATAGGTACTTGCATATATCCAACCCAAAGAGGTGGAATGCCGGGAAGAATAAT------T
ATCTATCTGTTTCTATCCAGCAATCCACATCAAGAAT-----------ATGTTTGGACCCAGTGCGTGGCATTTGAGATT
GGGCGTGCGGAGGATGTGGTTGGGGTTGCGGTTGGCGGTACCTCGAGCGTGAGGAGGCAGTTGTGGCCGAGGTCGAGGCG
CTCCAGGTTCTTGAAGCTCCCCAGGCACGACACCTATCAGCAACG--------ACGAC-----AGAGAGAGATGAGCAAA
GCCGGCGAGCC------------------------------GAGGCGGCGGGCGAGAGGGAGGG-------------ACT
TACGTCGGTGAAGGAGCGGTGGGAGAGGTCGAGGAACGTGGCGAGGCAGCCGGCCGGCGCCGCCTCCCTCGCCGTCTGCT
CCAGCGTCAGCCGCACCATGGCTGCTGGCCTCCTCTCTCTCCGCCGCCGCCGCCGCCGCCGCCGCTCCTACTCCAAAAGC
CCAAACAAAGAAA---------CCCCGAGATC-TTTTGCCCTAGCGCCACAACCCCA------CAAAGCCCACCAAGGCT
TTCGG---------------GCCCTGCTTACATGCGGGCCCGCCCCACCAAC-CCGACCGGGCCCACCTGCCAGGCGCG-
------TCTCGGTTGTTTCCTTGGGCTCGCTCGGTCGGTCGGTCGGTCAGAGGAGTTTATTGGAGTCGGAGAGGAGAGGA
AAGCAGGAGGAGACGACAG---------------ACCGCCGGGAAGACCCGCTC----------CGCCCGCCGCCCGCCG
GAGATGGCGATGACCGTGGAAGGTGAGG-ATCCCTCTTCTT-GCCCTTACCCAACTCCTGTTGCCTGGCTGATCGGGTTG
CCCTCGCATTCGGGATTTGCTGCGGCGCGGGGATCGGGCGGCTAGGGTTCGTGGTGTGGG-CGTGGGGTCGCGAATTGGC
GAGCCAGGGCGCGGGGAGATCC--------------GGTTGGTCGGAGCTCCGGTGCGGCGCTGGTCCGGGTGCTCTGTA
CACGTAGGTAGCGTGGGCGAGGCTGCCGGCGATTGGTAATCTGTAGGGGAGCGTGATTTTGCTCAGTCAGATCAGTGCGC
TTTCCTCAGGAGAAA-GGGGTCGTCGGCTGTGCTGCCAGGGGCCTAGATTTGCGTGGAGCAGGGGTCAACCGTGACGCGT
CCAGTTCGCTTGCATCTTATCAATGGGCTACAGACGGGGCGGTAGCTGGGGATTTTGCCTCTGGTGTATGGACCGTTCAT
TAGCCGTTCGCCTCGGTACGGGGCTCTGATCAAGATGGCGCAGATTCCGACGATTCAGCATGCGAGTAGTGGCAGGATGT
ACGCGAGTGTGGGTTATACCATTATAGCAGCATGGCCTGGAGTTTCATA---------------CCTGCTATCAGTTCAG
GCTAGAGCTCTGTGGTTTTGCGTCGTGGGAAATTCCTGGCTCAACTGATATATCCGTTCGGTCTTGTGTCTGCCTTATGT
GTAATGAGCAAACATTAAC-----------------------ATAGGAATAAAGGGGTTCCATTAAATATGAAACACGGT
TTGGCTTACCCCCATTTTCATGAATTAAGGCTATGTAATGAGCAG-----TTACCCTCTGGTAGTACAGTCCAGTTTCAG
CATCTATATTACGTTCTTGCACTCTGAGCAGTTCTTGATAATATCTATCTTTCTTGTATCCTGCTAATTGCTTCAAGTGT
TTGAC---TAACTTGTGTGTTCCTCGTCTGCTTTGCTTTCGTCCTTGCTGCTGCTGGATGATTCTGTCAACTTACTCTTG
GCGTGCGTCTTTGCAGTGTAAGTTCATCATTCTGATGGCTCTTAACCATTGTTTTGCGTTTGACAAGTGTGTCATCTTAT
TATAATTTTCTGTTACAGGCTCGCTGGACTTGCGTGTATGTTCTCCACCAGCGTTCTTTTGCAAATCCTGGTAAGCTATA
TGTACATCCATGCCTAGAGCTCACCGAATCAGGTTTCTGAAAGATGGTACAGTGGCAGCAATTGTTTTACTCACTGTCAG
TTT-CAGTAACTTTGAGGACAACCTGACAGATTGATTTCAAGTTTTGTTTCTGCAATTCATTCATGCCCAGTATTCTATT
GTGTGATTGTGCCAAAGAGGCAAGGAATGTACGAAAGAGTAATATTGTGACATGGTTGCTGGTCACTTCAGGGTTACTCT
TGTTATTCAGTTA----------------------------TAGGAGTCGATGCACACAAAGATTGGTCTGATTGTATCG
ACATGCACGCCTACTGTAGTAATTATTTTATATGGAGGTTATTGAGCAGCATCAGATTGCCATCCCTT-GTTATTTGACC
AAGTTGTTACTTCTGAATTCTCTGACTCTTCATTTTCTTGGTGCAGGCATGTGCTTTGTACAACAACTGGTGGCCTATGT
TAGCAGGTGACTGCTAGTTTCTTATCCTC---AATCACCGTGAGCAAGTCCCTGTGACTTTTCCACTGACGTTCTTGTGC
GTGCTTTTTCTGTTCTGCAGCACTCATGTATATCATTGTGCCAATGCCATGCCTGTTCTTTGGCGACGGATCCACACGGT
TCTTGAGTAGCGGAGAGGGTGGAGCGTAAGTTCTAACTTGATGATTCTCTTTCCTTTGGAGAAGTAGTAATGTGAACATG
TATATCGGCACAGAGCACATGATAGGCAATAGGCAATCACAACTTAGGATGCTGATCCACACATTCGCTACCATAAAGAT
TGTAATCAGACAGGGCATATCGTTTTTCAGGTGGATGAAAGCAGCCAAGTTCCTGACCGGCATGTCTGCCATGGGAAGCC
TCGCAATCCCGGCGATCCTGAGGCATGCTGGCCTGATCGAGACGGGGGCCATGTTCATCGAGTTCACGTCCTTCTTCATC
CTCGTGTGCACGGTGCTGTGCTTCCACAGGGCTACCCTGGACGAGGAGTGGTAAAGGCTCACACAAGACCACAAGGAGTG
CCCGAGAGAAGAACGCCTGTTAGGATGTGGAAAAGAAATCCCTTGGCGGGAGGGAGCTAACGTGAAACT--GTGTACAAA
GAAGC---------GCGCTTGACTACTGTATTTACGTATACGCGTACCCGAGATTTGGTAATCTAGTTGGTAATCCGTGC
TGAACCGGTCGTGTAAAGC--ATATGATCTGGCGCCGTCGATGGACGCGAGGCAGTCTTTCTATGGTTGGTTTGCCACTT
GTGCATCCAGAATCTGCACTTGGAGAATGGTATGAGCTATTGGATGGAATGAAGTGACAAGATTTTGTTTAGATG-TTGG
ACCTGAAGCTAAAGTTGCTCAGTTATGTGTGCCCCAATTTTTTGTTTGTGTGT--------GTGTGATCTTTAGAGAACA
TTCTTTGGTGTGATATTTGGAGAGCTTCTTTTTATTGTTGTTTGTGTGTGATCTCTCTAGATAGCATATTTCGGTTGGGT
TGTGGTGGATCTGAGAGAG-------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------
>chr2A_79
------------------------------------------------------------------------------AG
GTAAATCCCAATTTGAGCGCATCATCTAAGTAACTCACTGTAGCATCATTGTACACCGACAGTTGCTTCCCTGTTATCTA
CGACTGTTGCTCGTGAAAACAATTTCAGACGGTGATAGTGGCAGCACGCATGAGTTTCTTGCAATAACTA---CTAGAAC
AAGTCCACAGCGACAGA--CATGGGTACTTGCGTATATCCAATCAAAAGAGGTGAAATGCCGGGAAGAATA--------T
ATCTATGTGTTTCTGTCCCGCAATCCACATCAAGGGCAGCAAC---ACATGTTTGGACCTAGTGCGTGGCATTTGAGATT
GGGCGTGAGGAGGATGTGATGTGTTGCA---------GTACCTCGAGCGTGACGAGGCAGTTGTGGCCGAGGTCGAGGCG
CTCCAGGTTCTTGAAGCTCCCCAAGCACGACACCTGCACGCACGCACATGGCAACGAC-----AGAGAGAGATGAGCGAA
GCCGGCGAGCCACCGTTAAC----CTGAAGCAGCCGA---------GGCGGACGAGAGGGAGGG-------------ACT
TACGTCGGTGAAGGAGCGGTGGGAGAGGTCGAGGAATGTGGTGAGGCAGCCGGCCAGCGCGGCCTCCCTCGCCATATGTT
CCAGCGTCAGCCGCACCATG------------------------------------------------------------
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>chr3D_249
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-----------------------------TGCGTATATCCAATCCAAAGGGTTGAAATGCCGGGAAGAATATATCTATCT
ATCTATCTGTTTCTGTCCAGCAATCCACATCAAGGGCAGCAGCAGTACATGTTTGGACCCGGTGCGTGGCATTTGAGATT
GGGCATGGGGAGGATGCGATGTAC--------------TACCTCGAGCGTGACGAGGCAGTTGTGGCCGAGGTCGAGGCG
CTCCAGGTTCTTGAAGCTCCCCAGGCACGACACCTATCAG---CG--------ACGAC-----AGAGAGAGATGAGCAAC
GCCGGCGAGCCACCATTAGACTGA----AGCAGCCGA---------GGC--------GGGAGGG-------------GCT
TACGTCGGTGAAGGAGCGGTGGGAGAGGTCGAGGAACGTGGCGAGGCAGCCGGCCGGCGCCGCCTCCCTCGCCGTCTGCT
CCAGCGTCAGCCGCACCATGGT---------------TCTCCGCCGCCGCCGCCGCTCTTCCG--------TCCGAAAGC
CCAAACGAACAAA---------CCCCAAGGTTTTTTTGCCCTAGCGCCACAACCCACGAAGCCCAAAGCCCACAAAGACT
TTCTACAAGTCCTGCTTACAG------------GCGGGCCCGCCCCACCAAA-CCGCCCGGCCCCACCTGCCAGCGCGAG
ATGATATCTCGGTTGTTTCCTTGG--------GGTCGGTCGGTCGGTCAGAGGAGTT-ATTGGAGTCGGAGAGGAGAGGA
AAGCAGGAGGAGGCGACAGACAGGTGCCCGC---------------------------------------CCGCCCGCCG
GAGATGGCGATGACCGTGGAAGGTGAGGGATCCCTCTTCTC-CCCCCGACCCAACTCCTGTTGCCTGGCCGATCGGGCTG
ACCTCGCATTCGGG------------GCGGGGATCGGGCGGCTAGGGTTCTTGGTGGGGGGCGTGGGGTCGCGAATTGGC
GGGTCAGGGTGCGGGGAGATCCGATTGGTTGGTGCGGGTTGGTCAGACCTCTGGTGCGGCGCTGGCCCGGGGGCTCTGTA
TACC----TAGCGTGGGCGAGGCTGCCGGCGACTGGTAATCTACAGGGGAGCGTGATTTTGCTCACTCAGATGAGTGCGC
TTTCCTTAGGGGAAA-GGGGTC---GGCTGTGCTGCCAGGGGCTTAGATTTGCGTGGAACAGGGG----CCGTGATGCGT
CCAGTTCGTTTCCATCTTATCAATGGGCTGCCGGCGGTGGC--------------TGCCTATGGTGTATGGATCGTTCTT
TAGCCATTCGCCTCGGTACGGCGCTCTGATCAAGATAGCACAGATTCTGACAATTCAGCATGCAAGTAGTGGTAGGATGT
ACGCGAGTGTGGGTCATGCCATTATAGCAACATGGCCTGGAGTTGCAGGATATGGAATTCGATGCCTGCGATCAGTTCAG
GCTAGAGCTCTGTGGTTT-GCGTAGTGGAAAATTCCTGACTCAACTGATATATCCATTCGGTTTTGTGTCTGCCTTATGT
GTGATGAGCAAATATTAACCCCTTCAAGTGGTTCAATCTGAAATAGGAATGAAGGGGTTCCATTGAATAAGAAACACGGT
TTGGCTTAT--CCGTTCTCATGAATTAATGCTCTGTAATGAGCAGAGCAGTTACCCTCTGGTAGCACGGTCCAGTTTCAG
CATTTATATTAGGTTCTTGCACTCTGAGCAGTTCTTGATAATATCTATCTTTCTTATATCCTGCAAATTGCTTCAAGTGT
TTGAC---TAACT--TGTGTTCCTCGTCTGCTTTGCTTTCGGTCCT--TGCTGCTGGATGATTCTGTCAACTTACTCTTG
GCGTGTGTCTTTACAGTGTAAGTTCATTATTCTGATGTCTC-TAACCGTTGTTTTGCATTTGACAAGTGTGTCATCTTAT
TAAAAATTTCTGTTACAGGCTCGCTGGACTTGCGTGTATGTTCTCCACGAGCGTTCTGTTGCAAATCCTGGTAAGC--TA
TGTACATCCATGCCTAAAGCTCACTGAATCAGGTTTCTGAAAGATGGTACAGTGGCAGCAATTGTTTTACTCACTGTCAG
TTT-CAGTAACTTTGAGGACAACCTGACAGATTGACTTCAAGTTTTGTTTCTACAATTCATTCATGCCCAGCATTCTATT
GTGTGATTGTGCCAAAGAGGCAAGGAATGTACGAAAGAGTAATATTGTGGCATAGTTGCTGGTCACTTCAGGGTTACTCT
TGTTATTCAGTTAGGAGTCCCACATGCTAGAAAAATCATCTTAAGAGTCGATGCACAGAAAGATTGGTCTGATTGTATTG
ACATGCACGCCTAGTGTAGTAATTGTTTTATATGGAGGTTATTGAGCAGCATCAAATTGCCATCCCTTTGTTATTTGACC
AAGTTGTTACTTCTGAATTCTCTGACTCTTTATTTTCTTGGTGCAGGCATGTGCTTTGTACAACAACTGGTGGCCTATGT
TAGCAGGTGACTGCTGGTTTGTTATCCTCCTCAATCACCATGAGCAAGTCGCTGTGGCTTTTCCACTGACGTTCTT----
GTGCTTCTTCTGTTCTGCAGCACTCATGTATATCATTGTGCCAATGCCATGCCTGTTCTTTGGCGACGGATCCACACGGT
TCTTGAGTAGCGGAGAGGGTGGAGCGTAAGTTCTAACTTGATGATTCTCTTTCCTTTGGAGAAGTAGTAATAT-------
-------------------------------GGCAATCACAACTTGGGATGCTTATCCACACATTTGCTACCATAACGAT
TGTAATCAGACAGGGCATATCGTTTTTCAGGTGGATGAAAGCAGCCAAGTTCCTGACCGGCATGTCTGCCATGGGAAGCC
TCGCAATCCCGGCGATCCTGAGGCACGCTGGCCTGATCGAGACGGGGGCCATGTTCATCGAGTTCACCTCCTTCTTCATC
CTCGTGTGCACGGTACTGTGCTTCCACAGGGCCACCCTGGACGAGGAGTGGTAAAGGCTCGCGCAGGACCACAAGGAGTG
CCTGAGAGAAGAATGCCTGTTAGGATGTCGAAAAGAAATCCCTTGGTGGGAGGGAGCTAACGTGGAACTGTGTGTACAAA
GAAGCGTGCTTCAAGCGCTTGACTACTGTATTTACGTATACGCGTACCCGAGATTCGGTAATCTAGTTGGTAATCCGTGC
TGAACAGGTCGTGTAAAGCATATGTGATTCGGCGGCGTTGATGGACGCGAAGCAGTCTTGCTGTGGTTGGTTTGCCACTT
GTGCATCCAGAATCTGCACTTGGAGCATGGTACAAACTATTGGATGGAATGAAGTGACAAGATTTTGTTTAGATG-TTGC
ACCTGAAGCCAAAGTTGCTCAGTTATGTGTGCCTCAATTCTTTGGTTGTTTGTGTGTGATCGTGTGATCTTCAGAGAACA
TTTCTTGGTGCAATCTTTGGAGAA---CTTTTTATTGTTGTTTGTGTGTGATCTCT--AGATAACATATTTTGGTTGTTT
GTGGATGGTCTCTAGAGAACTTGATAGAAGCAACGGTCTCTCGGATCCGTTGCCAACTCCACAAAACCTAGAATATACTT
T-CTACTGCTAAAATAAGAAGCGCAAAATCAATTATTCAGAGGTCTCTCGTTGTCCATCAATCCATCTGTTCGCAGTTAC
TCTCATCATTTGGAAAGCTCCCTCACGCCAGGAAATTGTGTACTACTACTTCCGTCCAAAATCAAGTGTTGGAACACTTA
TTTTTGGGACGGAGGGAGTACTACACAATTTTC-TTTCTTTCAAAATGACAGACTCTCTGCATTCATTAAGAAGAAAAAG
GGGT-TACTACACATACATGACCACTACTTTGAGAAGTTGCCTGTTAGCATATGAATCATGGATAGGCTGAAATATCTAT
A-------------------------------------------------------------------------------
------------------------------
>SNPs
SS---SSSSSS--S----------------S--S--S--------------------SS---------------S-S---
S------S----------------------------S------------------S---------------S--------
----------------S---------------S---------------------------------S-------------
-SS-SSSSSS-------------------------------------------------S---S----------------
-----------------S---------------------S--S----S--S---S-------S-----------------
-S---------S-SSS----------------------------------------------------------------
----------------------------------------SS---SSSSSS--S----SSSSS-----S-----------
------------------------------------SSSSS--------S----S----S----SSSSSSSSSSSSS---
------------------------------------------------------S-------------------------
------------------------SSSS--SS-SSSS--S--S-S--------------------SS--SS---------
----S---S----SSSSSSSSS------------S-------------S-------------------------------
------------------------------------------S---------S---S-----------------------
---S----SSSS-------------------------S------------------------------------------
-------------------SSSSSS------SSS--------------S-----SSSSSSSSSS----------------
------------------------S-------S------S-S-----------S-----S--S--S--S---------S-
-S------------S------------S-------------------------S--------S---------------S-
----------------S--------------------------------S-------S----S----S--S-------SS
--S----------------------S-SSS-SSSSSS--SSS-SS-SSSS--S---------S-----------------
---------------S---------S---------------S-----S--------------------------------
---SS----------------S----------------------------------------------------------
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---------------------------------------------S--------------S-------------------
-----SSS----------------------------------------------------S-S-----------------
-----------S----------------------S-S----------------------------------S-S------
-----------S--------------------------------------------------------------------
-------S------------------------------------------------------------------------
---S------------------------------S-------------------------S-S-----------------
------------------------------S--S----------------------------------------------
--------------------------------------------SSS---------------------------------
--------SS--------------------------------S-----------------S-------SS----------
-------------S------SS-----S----------------------------------------------------
--------------------------------------S----------S------------------------------
S-------------------------------------------------------------------------------
------------------------------------S---------------------------------SS--------
------S------SSS------------S------------------------------------------------SS-
-S----------------S--S--------S-----------S--S------S---------------------------
----S---------------------------------------------------------------------------
--S-----------S----------------------------------------------------S------------
--------------------------------------------------------------------------------
----------------------------------S----------------------------------------S----
--------------S--------------------S------S-----S------------------S------S-----
------S---------------S--S----------------------------------S--------------S----
-------------S-------------------------------------S----------------------------
--------------------------------------------------------------------------------
-----------S-----------------------------S--------------------------------------
-S------------------------S---------------------------------S------------S------
-----------------------S--S-----------------S--S-S-----------SS-----------------
-------S-S---------S--S--S-S----SS--------S----------S-------S-----------S----SS
---SS--------------S-S-------S--------------------------------------S-----------
-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_820
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CCAAGCAAGCAAACCCCTTC------------------------------------------------------------
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>reverse_2252
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-----------CTTACAGGCTCGCTGGACTT-------------------------------------------------
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>forward_2234
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------------------------------------------------------TGCATTTGACAAGTGTGCCG------
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--------------------------------------------------------------------------------
------------------------------
>reverse_4242
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-TGCTGGGACTCTGGAAGCTA-----------------------------------------------------------
------------------------------
