>input_sequence_43508
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----------------------ATGGGGAGGAAGCTAGGGCTGGAGAGGGTGCTGGACTGCTTCTCGCTCTCGGTGTGCG
CCAACGCTTGCGTCTGCGTGCACGCGGTGGAGGACGAGAACGAGGAGAGCGAGGGGAAGGCCCTGGTGAGCGCTCAGCTG
GACGAGCTGCTCAAGCTCAAGGACTTCGGCGGTGGGGCTAAGACTCTCGCTTTCCATCTGGAGCCAAAGGTGAG---GAA
TTAACTAACGC---------CTCCCTCTCTAAGATGCCTCTGCAGAACATGCTGTGGACACTGCTAGTATTCACCTGCAC
TGCATAATAACATGCCTCCTGCTGATGCAGACGGTGGAGCTGAGGGTGTCCATGCACTGCTACGGGTGCGCCAGGAAAGT
TCAGAAGCACATCTCCAAGATGGAAGGTACCATACGAATGAGAATTGAACCTTTAAATCCCTTTTTCGGGGCAGTGTTGA
CATTCTTTTGATAGGGCA----TAGCTAGTGATAAAAGCATACAATCATGCTGGGGTACTTGTTATCGTAAAGTTCCTAT
CATTTGACTCCAAACAAAAAAGGAATTGCAAAGTTTGTACAGCTGATCTGGCCGTAATCTTTGCTAATTATTCGCCAG--
AGGGACAACTTGACAGCTTGTTTT-------TTCCTTGATTATCTCACTGCAATTGCTTTCGAACCTGCACAACACACAG
CAGATCTCTGCCTCGTGTCTTACTCTAATTTTCTCTTCCCTTTCAACGCCACCTCG--ATGTGTTGATACTTCAGACATA
GCCAAGTGTGCGTTTCTTA---CTGCTAGTGTTTA-----AAAACAAAT-ATAGTGTCCATTTCTTATTGGTGGGGCGGA
GCATTAGTATATCCAGGATCTCGAAGTAATCAACGACTGTGAAATGTGGCGCGGATCTGTAGACCGGATAAT---TTTTC
AAAGTAGAGTAGCGCCGT----AGC--CCACATGGGCGGGCGTCACGGGA------ATAGGAGCGCAACGTCTCAGAAGT
CCAGAAGCATTTGGAGCAGAGATAAGTCGCGATCTGTCAGACGCGGGAAGGAAAA-----ACACCCTGCGGCAGGTTGAC
CTCTGTGCGCCTCCAGTCG----TTTCAAATTTTCAATATACAACAAGCGAAGCAAAACCCCAAATTTCTGCTCTGCTCT
GCTCCCCT-----CGCTGCTGGGCTAATGGCGAACAGTGAACAAAGCCTCGCTGCA------------------------
---------------------GTGGCATGTTACGGAATGTAGTCATACACG-----TCACCGAAGCCGGTG-----GCGG
GTGGGCGTCGATCC--------------CTGTGCGCCTGAGTTGGCTCCGGTGTCGTTTTGGCCGCGCGGGCGGGCGACC
ACGCGCCGATGCAT---GCATGGATCGGGTTCCTTCCGTTCGCGCTGC--------CGCTGCGGTACTGCATGATACTGC
ATGCTTGGGCGCATCCGCACATGTTGCTACTCTGCGCATGTGCAGGGCTGCCTGCCTTTTCTGGAAAAACTTTTGGTGGC
ACCGCCAGTCGGTGGCCAAGATTTGGTACTACTG----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------CTGCTGCGGCGCTCATAATTGAGCTCCCACCAACTTCACCGTATGGCTCGTTGTCGGAGCATCTGCG
TCGATAGATAT-----TATCAGTTCAGTTAAAATATGTTGATTTACGAGTCGAGTGAGTCCTGGACGAGCGATCATCTTT
AACATTTTGTTTCTGTTCTTGTGTGTCCAGGTGTGTCGTCGTTTGAGGTGGATTTGGAGAACAAGAAGGTGGTCGTGACG
GGGGACGTGACGCCCTACGAGGTGCTGCAGAGCGTCTCCAAGGTGATGAAGTTTGCGGAGCTGTTGGTGGCCCCCAAGTC
CCCGGCTCCGAGTAGATAG-------------------------------------------------------------
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----------------------
>chr3D_1_TraesCS3D01G288100
TGCAAAGTCGTGGTCTGCAACTGCAAGGAAGAGATGCACTGTGGCATGCGTCAATGAAGGTGACCAGAGCCTATTCTATG
T----CCTTGAGCGCCCTTGTTTAAAAATCTGTTGTCCCCTCGTGTCTCTTCGGCGCAAGGGCAAGGCGGATATGGTTTT
ATATGGTAATAATCGTCGCCGTCTTGCTTGTGTGTGTACG----TATGCTCACGTTGCAGCGCATATATATATTCCCCAC
C----GAAGGGAAAGCTACAAACACACACTAT-----------ACACTGATGGCCGATGTGCGCAAGTGAAAGACACGTA
TGTGTCAGCCTGTGAACCTTGACGTGTCTAACCTAAC-TTTTCCTTGTTTTCAGTTACTTGTATAGTGTTTCTTTTCTTT
CAAAAAGCAGTGTTTTCAGTTATTTGTATGT-----AAAGGCCATCCAGCCTCTCATTTGCACGACGCATGATTGGGTCC
CTTCTATTCTATGGTTATGCTTTCAGCTCAATTTGTAGTGTATGCATGTACG----CATGGGCATCGCGATGTGCGTGTA
TTCTCAAACGCATGATTCCACGAGTGGTAGCGCCAATAAGCAAGCACATTGTCACATGGAGCGCTTGCCAGCTTGTCTGT
CTGTCCAGCCCCCTTGTCAAACCGGCTCATGACTCTGTCTTGCACCAAAACAAAAGCTATGATTGTATTCAATTTCAACA
TCGGGAGTTGCTTCAGACTTTTGAGCTAACATA-----TAGCCCACTTT---TATACTGCCCGGCGCTGCTGCTTATATG
CATATATATTCTCAT-CCCTTGCCTCATTCCAAGC-----GCTTTGCTTTGGTAGGTCTGCTCGCTCAGCGCGCGTACCA
GCTTGTCTCTTCTTCCTCGTCGCCTTAAAAGGGCCTCTGCGCTTTGCAGTGCGCTTTTCACTTCAGACTGAGCTTCACCT
CTCAGAGACTTCGGAGAGATA-------GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGCCGTGGTGAGTGAGAT
AGAG--------AGAGGAGAGGATGGGGAGGAAGCTAGGGCTGGAGAGGGTGCTGGACTGCTTCTCGCTCTCGGTGTGCG
CCAACGCTTGCGTCTGCGTGCACGCGGTGGAGGACGAGAACGAGGAGAGCGAGGGGAAGGCCCTGGTGAGCGCTCAGCTG
GACGAGCTGCTCAAGCTCAAGGACTTCGGCGGTGGGGCTAAGACTCTCGCTTTCCATCTGGAGCCAAAGGTGAG---GAA
TTAACTAACGC---------CTCCCTCTCTAAGATGCCTCTGCAGAACATGCTGTGGACACTGCTAGTATTCACCTGCAC
TGCATAATAACATGCCTCCTGCTGATGCAGACGGTGGAGCTGAGGGTGTCCATGCACTGCTACGGGTGCGCCAGGAAAGT
TCAGAAGCACATCTCCAAGATGGAAGGTACCATACGAATGAGAATTGAACCTTTAAATCCCTTTTTCGGGGCAGTGTTGA
CATTCTTTTGATAGGGCA----TAGCTAGTGATAAAAGCATACAATCATGCTGGGGTACTTGTTATCGTAAAGTTCCTAT
CATTTGACTCCAAACAAAAAAGGAATTGCAAAGTTTGTACAGCTGATCTGGCCGTAATCTTTGCTAATTATTCGCCAG--
AGGGACAACTTGACAGCTTGTTTT-------TTCCTTGATTATCTCACTGCAATTGCTTTCGAACCTGCACAACACACAG
CAGATCTCTGCCTCGTGTCTTACTCTAATTTTCTCTTCCCTTTCAACGCCACCTCG--ATGTGTTGATACTTCAGACATA
GCCAAGTGTGCGTTTCTTA---CTGCTAGTGTTTA-----AAAACAAAT-ATAGTGTCCATTTCTTATTGGTGGGGCGGA
GCATTAGTATATCCAGGATCTCGAAGTAATCAACGACTGTGAAATGTGGCGCGGATCTGTAGACCGGATAAT---TTTTC
AAAGTAGAGTAGCGCCGT----AGC--CCACATGGGCGGGCGTCACGGGA------ATAGGAGCGCAACGTCTCAGAAGT
CCAGAAGCATTTGGAGCAGAGATAAGTCGCGATCTGTCAGACGCGGGAAGGAAAA-----ACACCCTGCGGCAGGTTGAC
CTCTGTGCGCCTCCAGTCG----TTTCAAATTTTCAATATACAACAAGCGAAGCAAAACCCCAAATTTCTGCTCTGCTCT
GCTCCCCT-----CGCTGCTGGGCTAATGGCGAACAGTGAACAAAGCCTCGCTGCA------------------------
---------------------GTGGCATGTTACGGAATGTAGTCATACACG-----TCACCGAAGCCGGTG-----GCGG
GTGGGCGTCGATCC--------------CTGTGCGCCTGAGTTGGCTCCGGTGTCGTTTTGGCCGCGCGGGCGGGCGACC
ACGCGCCGATGCAT---GCATGGATCGGGTTCCTTCCGTTCGCGCTGC--------CGCTGCGGTACTGCATGATACTGC
ATGCTTGGGCGCATCCGCACATGTTGCTACTCTGCGCATGTGCAGGGCTGCCTGCCTTTTCTGGAAAAACTTTTGGTGGC
ACCGCCAGTCGGTGGCCAAGATTTGGTACTACTG----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------CTGCTGCGGCGCTCATAATTGAGCTCCCACCAACTTCACCGTATGGCTCGTTGTCGGAGCATCTGCG
TCGATAGATAT-----TATCAGTTCAGTTAAAATATGTTGATTTACGAGTCGAGTGAGTCCTGGACGAGCGATCATCTTT
AACATTTTGTTTCTGTTCTTGTGTGTCCAGGTGTGTCGTCGTTTGAGGTGGATTTGGAGAACAAGAAGGTGGTCGTGACG
GGGGACGTGACGCCCTACGAGGTGCTGCAGAGCGTCTCCAAGGTGATGAAGTTTGCGGAGCTGTTGGTGGCCCCCAAGTC
CCCGGCTCCGAGTAGATAGT------TGATGATGATAAGCTGATAGGGTGGGTGTGACACATTTCACTC---ATAAAATC
AAATATATGTGCTGTGATTCTCACGCAAGGCACGCATACGTAGCAGCACACGCAACCATGGCAAGGAAGAAACTATGGGA
AGATTGTAACTAGGAGACCAAGGAAGAAGAGGGTGG-TTGGGTCTAATTGGTTGATCTATCTACTCAAAAGAAAAAAGAA
AAATAGCCCGTCCATACGTGCAG---------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------------------------------CATGCTTTAGCGGTTC
TGTTTAGGGCCACTACGTACGTACGT----GTGGTGTTGGTATAAATTGATCAAGTATGAAGGTATCTCTTGACGCTTGT
ATGTAACATGTCCCCGTGGATTTGGATTGTAT------------------------------------------------
-------GCAAGGGCATCTAGATCCGGGGGAAAGAAAATG---TAGTACGGCTCACACCCAAGGTTGGACTGTGTGCTGT
GCTCGGAAAAAAG--------TTGGAGCGAAGTCATGTCGGAAGGGGCAAATTTTCGTGTTTTGACCCTTTTGTGATACC
TATTCGAGATCTGACCCTAATTTGAATTTTTTTTCGAGATCTGACCCTTTTGCTACCGCCAGGGTCCATGACGGTAGGGT
GTAACAACCTACCGTCAGGGACCTTGGCTGTAGGAAACATCCTTACCGCCAAACAGACTGGCGGTAGCATGTACAACCCT
ACCGCCAAGGTGCTCGGCGGTAGGCATGAGCACGCACTGTGTTCAATACTTAGCAGGATTTAACGGTAGGGCATGCAACC
CTACCGCCATGGACCTTGGCGGTAGGCTGTTATACCCTACCGCCATGGACCCTGGCGGTAGC-AAAAGGGTCAGATCTCA
AAAAAAA-TCAAACTAGGGTCAAATCTCGAATAGATATAAGAAAAGGGTAACACAAAATTTAGCCAGGATGTTTTAACGT
TGCACGACACAAAAAGAGAGGGCCGCTACTACAAATAAGCCGGATGATTTTTTTAGAAAAATCATCCGCCTGCCTAGCCA
TCCGATCTGGCACTGTTAGCCG
>chr3B_21
--------------------CTGCAAGGAAGAGATGCACTGTGGCATGCGTCAATGAAGGTGACCAGAGCCTATTCTATA
CGTACCCTTAAGCGCCCTTGTTTAAAATTGTGATGTCCTCTCGTGTCTCTTCGGCGCAAGGGTAAGGCGGATATGGTTTT
ATATGGTAATAATCGTCGCCGTCTTGCTTGTGTATGTACG----TATGCTCACGTTGCAGCGCATATATT--TTCCCCAC
C----GAACGGAAAGCTACAAACATACACTA-----------CACACTGATCGCCGATGCGCACAAGTGAAAGACACGTA
TGTGGCAACCTGTGAACATTGACGTGTCTAACCTAACTTTTTCCTTGTTTTCAGTTACTTGTATATGTATTATTTCCTTC
CGAAAAGGAGGGCTTTCGGTTACTTGTGTAAAGG-----------CCAGCCTCTCATTTGCAGGA----TGATTGGGTTC
TATATATTCTATGGTTATGCTTTCAGCTCAAGGCGTAGTGT-TGTATGTACG----CATGGGCATCGCGATGTGCCTGTG
TTCCAAAATGCATAATTCCACAAGTGGTAGCGCCAATAAGCAAGCACATTGTCACATGGAGGGCTTGCCAGCTTGTCTGT
CTGTCCAGCCCCCTTGTCAAACCGGCTCATGACTCTGTCTTGCACCAAAACAAAAGCTATAATAATTGTA---TTCAACA
TCGGGAGCTGCTTCGGACTTTTGAGC-----TA-----TAGCCCACTTC---TATACTGCCCGGCGCTGCTGCTTATATG
CATATATATTCTCAT-CCCTTGCCTCATTCCAAGCGCTTGGCTTTGCTTTGGTAGGTCTGCTCGCTCAGCGCGCGTACCA
GCTTGTCTCTTCTTCCTCGTCGCCTTAAAAGGGTCTCTGCGCTTAGCAGTGCGCTTTTCACTTCAC----AGCTTCACTT
CTCAGAGACTTCAGAGAGG-------------------------------GAGAGAGAGAGAAACCGTGGTGAGTGAGAT
AGAGATAGAGAGAGAGGAGAGGATGGGGAGGAAGCTAGGGCTGGACAGGGTGATGGACTGCTTCTCGCTCTCCGTGTGCG
CCAACGCTTGCGTCTGCGTGCACGCGGTGGAGGACGAGGACGAGGAGAACGAGGGGAAGGCCCTGGTGAGCGCTCAGCTG
GACGAGCTGCTCAAGCTCAAGGACTTCGGCGGTGGGGCTAAGACTCTTGCTTTCCATCTAGAGCCAAAGGTAAACAAGAA
TTAACA----CCCGTTCTATCTCTCTATCTAAGATGCCTCTGCGCAATATG--------ACTGCTAATATTCACTATG--
-----------------------GATGCAGACGGTGGAGCTGAGGGTGTCTATGCACTGCTACGGATGCGCCAGGAAAGT
TCAGAAGCACATCTCCAAGATGGAAGGTACCATGCGAATGAGAACTGAACCTTTAAATCCCTTTTTCTGGGCAGTGTTGA
GATTCTTTTGATAGGGCA----TAGCGC----TAAAAGCATACAATCATGCTGGGGTACTTGTTATCATAAAGTTCCTAT
CATTTCACTCCAAACAAAAAAGGAATTGCAGAG-TTATACAACTGATCTGGCCGTAAGCTTTGCTAATTAGTATTCGCTA
AGGGACAATTTGACAGCTTGTTTTTC-------CCTTGATTATCTCACTGCAATTGCTTTCGAACCTGCACAAAACACAG
CAGATTTCTGCCTCGTATCTTACTCTAATTTTCTCTTCCCTTTCAACGCCACCTCG--ATCTGTTGATAATTCAGACACA
GCCAAGTGTGCATTTCTTA---CTGCTAGTATCATTTGATAAAAAAAAT-AGAGCGTCCATTTCTTATTAGTGGGGCGGA
GCATTAGTATATCCAGGATCTCGAAGTAATCAACGACTGTGAAATGTGGCGCGGATCTGTAGACCGGATAATAATTTTTC
AAAGTAGAGTGGCGTGGT----AGCCACCACATGGGCGGGCGTCAGGGTCACGGGGATAGGAGCGCAACGTCTCAGAAGT
CCAGAAGCATTTGGAGCAGAGATAAGTCGCGGCCTGTCAGACGCGGGAAGGAAGA-----ATGCCCTGCGGCAGGTTGAC
CTCTGTGCGCC-------------------------------------------AAAACCACAAATT-------------
-------T-----CGTTGGTGGGCTAACGGCAAGCAGTGAACACAGCCACGCAGCCATGAGCTCCGGAAAGCTTTTAGGT
TAGTACACTAGTGCTACTGTTGTGGCATGTTACGGAATAAAACACAGGTCACCGACTCACCGCAGCCGGTG-----GCGG
GTGGGCGTCGATCCA------TTCGGGCCTGTGCGCCTGAGTCGGCTCCGGTGTCGTTTTGGCCGCGCGGGCAGGCGACC
ACGCGCCGATGCAT---GCATGGATCGGGTTTCCTCCGTTCGCGATACCGCTGCCGCTGCGTGCA------------TGC
ATGCTTGGGCACATCTGCACATGTTGGTACCCTGCGCATGTGCAGGGCTGCCTGCCTTTTCTGGAAAAACTTTTGGTGGC
ACCGCCAGTCGGTGGCCAAGATTTGGTACTA-------------------------------------------------
--------------------------------------------------------------------------------
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-------------CTGCTGCAGCGCTCATAATTGACCTGCCACCACCTTCGCCGTACGGCTCATTGTCGGAGCATCCGCA
TCGATAGATAT-----TATCAGTTCGGTTAAACTATGTTGATTTACGAGCCGAGTCCCGGACG-----GCGATCAT-CTC
TGACATTTGGTTATTTTCCTGTGTGTCCAGGTGTGTCGTCGTTTGAGGTGGATTTGGAGAAGAAGAAGGTGGTCGTGACG
GGGGACGTGACGCCCTACGAGGTGCTGCAGAGCGTCTCCAAGGTGATGAAGTTTGCGGAGCTGTTGGTGGCCCCCAACTC
CCCGACTCCGAGTAGATAGACGATGATGATGATGACAAGCTGATAGGGTGGGTGTGACACATTTCACT--TGATAAAATC
AAATATATTTGCCATGATTCTCACGCAAGGCACGCGTACGTAGCAGCACACACAACCATGGCAAGGAAGAAACTATTGAA
AGTTTGTAACTAGGGGGCCAAGGAAGAAGAGCGTGC-TTGGGTCTAATTGGTTGATCTATCTACTCAAAAGGAAAAA---
AAACAGCCCGTCCATACATGCAG---------------------------------------------------------
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----------------------------------------------------------------CATGCTTTAG------
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----------------------
>chr3A_21
--------------------CTGCAAGGAAGAGATGCACTGTGGCATGCGTCAACGAAGGCGACCAGAGCCTATTCTATA
C----CCTTGAGCGCCCTTGTTTAAAAATGTG----------GTGTCTCTTGGGCGCAAGGGCAAGGCGGATATGGTTTT
ATATGGTAATAATCGTCGCGGTCTTGCTTGTGCATGTACGTATATATGCTCACGTTGCAGCGCATATATA--TTCCCCAC
CCACCGAAGGGAAAGCTACAAACATACACTATACACACTATACACACTGATCGCCGATGTGCACAAGTGAAAGACACGTA
TGTGTCAGCCTGTGAACCCTGACGTGTTTATCCTAAC-TTTTCCCTGTTTTCAGTTGCTTGTACATGCTTTTTGATCTTC
CGAAAAGGAGGGCTTTCGGTTACCTGTGTGTACGTGAAAGGCCATCCAGCCTCTCATTGGCACGATGCATGATTGGCT-C
CTTCTATTCTATGGTTATGCTTTCAGCTCAGTTTGTAGTGTATGTACGTACGCATACATGGGCATCGCGATGTGCGTGTG
TTCCAAAACGCATGATTCCACGAGTGGTAGCGCCAATAAGCAAGCACATTGTCACATGGAGGGCTGGCCAGCTTGTCTGT
---------CCCCTTGTCAAACCGGCTCATGACTCTGTCTTGCACCGAAACAAAAGCTATGATTGTATTCAATTTCAACA
TCGGGAGCTGCTTCAGACTTTTGAGC-----TAACATATAGCCCACTTTTTTTATACTGCCCGACGCTGCTGCTTATATG
CATATATATTCTCATCCCTTTGCCTCATTCCAAGCGCTTGGCTTTGCTTTGGTAGGTCTGCTCGCTC---------ACCA
GCTTGTCTCTTCTTCCTCGTCGCCTTAAAAGGGCCTCTGCGCTTTGCAGTGCGCTTTTCACTTCAG----AGCCTCACTT
CTCAGAGACTTCGGAGAGAAGCCGTGGTGAGATAGAGATAGAGATAGAGATAGAGA-----------------------T
AGAG--------GGAGGAGAGGATGGGGAGGAAGCTAGGGCTGGAGAGGGTGCTGGACTGCTTCTCGCTCTCGGTGTGCG
CCAACGCCTGCGTCTGCGTGCACGCGGTGGAGGGCGAGGACGAGGAGAACGAGGGGAAGGCCCTGGTGAGCGCGCAGCTG
GACGAGCTGCTCAAGCTCAAGGACTTCGGCGGTGGGGCTAAGACTCTTGCCTTCCATCTGGAGCCAAAGGTAAACAAGAA
TTAACTAACGCCCGTTCTATCTCTCTATCTAAGACGCCTCTGCACAACATGCTGTGGACACTGCTAATATTCACTATG--
-----------------------GATGCAGACAGTGGAGCTGAGGGTGTCCATGCACTGCTACGGATGCGCCAGGAAAGT
TCAGAAGCACATCTCCAAGATGGAAGGTACGAGGCGAATAGTAACTGAACCTTTAAATCCCCTTTTCGGGGCAGTGTTGA
GATTCTTTTGATAGGGCCTAGCTAGCGC----TAAAAGCATACAATCATGCTGGGGTACTTGTTATCGTAAAGTTCCTAT
CATTTGACTCCAAACAAAAAAGGAATTGCAGAG-TTATACAACTGATCTGTCCGTAAGCTTTGCTAATTATTCGCCAG--
AGGGACAACTTGACAGCTTGTTTTTTTTTCCTTCCTTGATTATCTCACTGCAATTGCTTTCGAACCTGCACAACACACAG
CAGATCTCTGCCTCGTGTCTTACTCTAAGTTTATCTTCCCTTTCAACACCACCTGTCAATGTGTTGATAATTCGGACATA
GCCAAGTGTGCATTTCTTACTGCTGCTAGTATCATTTGATAAAAAAAAGCAGAGCGTCCATTTCTTATTAGTGGGGCGGG
GCATTAGTATATCCAGGATCTCGAAGTAATCAACGACTGTGAAATGTGGCGCGGATCTGTAGACCGGATAAT---TTTTC
AAAGTAGAGTAGCGCCGTAGCCAGCCACCACATGGGCGGGCG------------------GAGCGCAACGTCTCAGAAGC
CCAGAAGCATTTGCAGCAGAGATAAGTCGCGGCCTGTCAGACGCAGGAAGAGAAAAATGTATGCCCTGCGGCAGGTTGAC
CTCTGTGCGCCTCCAGTCATTCATTTCAAAATTTCAATACA--ACAAGTGAAAGAAAACCCCAAATTTCTACTCTGCTCT
GCTCTGCCGCACGCGTTGCCGGGCTAATGGCGAACAGTGAACGCAGCCACGCGGCCATGAGCTCCGGAAAGCTTTTAGGT
TAGTAGTACGCCAGTACTGTTGTGGCATGTTACGGAATAAAACACAGGTCACCGACTCGCCGCAGCCGGTGGACTCGCGG
GTGGGCGTCGATCCACCTCCGTTCGGCCCTGTGCGCCTGAGTTGGCTCCGGTGTCGTTTCGGCCGCGC------------
----GCCGATGCATGCAGCATGGATCGGGCTCCTTCCGTTCGCGCGGCCGCTGCGGCGCTGCGGTACTGCATGATACTGC
ATGCTTGGGCGCATCTGCACATGTTGCTACTCTGCGCATGTGCAGGGCTGCCTGCCTTTTCTGGAAAAACTTTTGGTGGC
ACCGCCAGTCGGTGCCTAAGATTTGGTACTACCTCCGTCCCGGTGTATAAGTCATTTGCGTAGTTTTAGGTCGACAATTT
AACTATCTAAATATGTATTATATGTGACAAAAAAAATATATTTAGAAACTACATTTGTGTAAAAATCTAGTGATATACTT
TTCATGACATATAACACATATTTAATTCCTTAAATCGACGGCCTAGACTACGCGAATGACTTATACACCGAGACGGAAGT
AGTACTACTGCTACTGCTGCCGCGCTCATAATTGAGCTGCCACCACCTTCACCGTACGGCTCACTGTCGGAGCATCTGCG
TCGATAGATATTATCATATCAGTTCAGTGAAAATATGTTGATTTACGAGTCA---GAGTACTGGACGAGCGATCAT-TTT
AACATTTTGCTTCTGTTCTTGTGTGTCCAGGTGTGTCGTCGTTTGAGGTGGATTTGGAGAACAAGAAGGTGGTGGTGACG
GGGGACGTGACGCCCTATGAGGTGCTGCAGAGCGTCTCCAAGGTGATGAAGTTTGCGGAGCTGTTGGTGGCCCCCAAGTC
CTCGGCTCCGAGTAGATAGACGA---TGATGATGATAAGCTGATAGGGTGGGTGTGACACATTTCACTGATGATAAAACC
AAATATATATGCCATGATTGTCACGCACGGCACGCGTACGTGGCAGCACACGCAAGCATGGCAAGGAAGAAACTATTGGA
AGATTGTAACTAGGAGATCAAAGAAAAAGAGGATGGTTTGGGTCTAATTGATTGATCTA----CTCAAAAGAAAAAAGAA
AAACAGCCCATCCATACATGCATCATGCTTTTTTTTGCATGATAACACGTGTCTCATTTATATCATAAAGAACAAAGTAC
AAGTCACGTAAGAATCGACATGACAAAACTGAGAAGATAGCAAAATATCTCTGAGCTTGACACCAACGCCCATCACCTGT
CTTCGGCACCACCACAACAGCCACCGAAAAAAAGAATCACGGATCACCTCCTCACCCGAGCTTGACGTGGCTCCATCGTT
AAAATGCAGCTTTGCGGACCTCTAAGGTGGCTCACCAAGAGTGAAGCCTTTGCCGTTGAACCAATCAGACCGGGACAACA
CTCCGGACACGCAATCGAACTTCAGATCTGGCACCCCACCACGACTAAGACGCCGAAGGAGGAAACCATATCTGCCATCC
ACGAACCACGAACCCAGCACACGTTTTCGTCTTCCAGATGTCGTCGATGCAGACTACAATCTGCATCCGCTCCTGGACTA
CCTCCCAAACTCCACATCGACGCTGGAGTAAACGTCGTCGCAACGGTGGAACCCGATGACACAGATCCACCACGAGAATG
ATGTCGCCGCCACGCCATCCTTGCTAACCTAGACTACATGAGAGTAAAAACCATCCACGTGCACCATGCTTTAGCGGTTC
TGTTTTGGACCATTACGTATGTATGG------------GTGGTGTTTTTTTTAACATCAGTAGGCATCT------CTTGT
ACGTAACGTGTCCCCTTGGATTTGGATTGTATTCCCTCCGTAAACTAATATAACAGCGTTTAGATCACTTAATGCAAGAA
GTATAATGCAAGGGCATCCGGATCCGGGGGAAATAAAATG---TAGTACGGCTCGCACCCAAGGTTGGACCGTGTGCTGT
GCTGGGAGAAAAGAACGTTGCTTGGAGCGAAGCCATGCAGGAAGG-----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------------------------------------------------------CAGGATGTTTTAACGT
TGCACGACACAAAAAGAGAG------------------------------------------------------------
----------------------
>chr2A_2629
--------------------------------------------------------------------------------
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-------------------TGTGTGTCCAGGTGTGTCGTTGTTTGAGGTGGATTTGGAGAAGAAGAATGTGGTGGTGACG
GGGGACGTGACGCCCTACGAGGTGCTGCAGAGCGTCTCCAAGGTGATGAAGTTTGCAGAGCTCTTGGTGGCCCCCAAGTC
CCCGGCTCCGAGTAGATAGACGAC---GATGATGATAAGCTAATAGGTTGGGTGTGACACATTTCACTGATGATAAAACC
AAATATATATGCCATGATTGTCACGCATGGCACGCGTACGTGGCAGCACACGCAAGCATGGCAAGGAAGAAACTATTGGA
AGATTGTAACTAGGAGATCAAGGAAAAAGAGGGTGG-TTGGGTCTAATTGGTTGATCTA----CTGAAAAGAAAAAAGAA
AAACAGCCCGTCCATACGTGTAGCAT------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------GCTTTAGCGGTTC
TGTTTTGGGCCATTACGTATGTATGG------------GGTATAAATTGATCAAGTATGAAGGTATCTCTTGACGCTTGT
ACGTAACATGTCCCCTTGGATTTGGGTTGTATGT----------------------------------------------
-----ATGCAAGGGCATCAGGATCTGGGGAAAAGAAAATGTACTAGTATGGCTCACACCCAAGGTTGGACT---------
--------------------------------------------------------------------------------
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----------------------
>chr3D_3004
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----AGCCCGTCCATACATGCAACAT------------------------------------------------------
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-------------------------------------------------------------------GCTTTAGCGGTTC
TGTTTAGGGCCACTACGTACGTACGTACGGGTGGTGTTGGTATAAATTGATCAAATATGAAGGTATCTCTTGACGCTTGT
ATGTAACATGTCCTCGTGGATTTGGAT----TGT----------------------------------------------
-----ATGCAAGGGTATCTGGATCCGGGGAAAAGAAAATG---TAGTACGGCTCACACCCAAGGTTGGACCGTGTGCTGT
GCTCGGAGAAAAG--------TTGGAGCGAAGCCATGCCGGAAGGGGCAAATTTTCGTGCTTTGACCCTTTTGTGATACC
TATTCGAGATCTGACCCTAGTTTGAATTTT-TTTCGAGATCTGACCCTTTTGCTACCGCCAGGGTCCATGATGGTAGGGT
GTAAAAACCTACCGCCAGGGACCTTGGCGGTAGGAAACATCCCTACCGCCAAACAGACTAGCGGTAGCATGTACAACCCT
ACCGCCAAGGTGCTCGGCGGTAGGCACGAGCACGCACTGTGTTCAATACTTAGCAGGATTTAACGGTAGGGCATGCAACC
CTACCGCCATGGACCTTGGCGGTAGGCTGTTATACCCTACCGCCATGGACCCTGGCGGTAGAAAAAAGGGTCAGATCTCG
AAACAATTTCAAACAAGGGTCAGATCTCGAATAGATATCAGAAAAGGGTAAAACAAAATTTAGCCAGGATGTTTTAACGT
TGCACGACACAAAAAGAGAGGGCCGCCGCTACAAGTCGGCC-GATGATTTTTTC-GAAAAATCATCCGCCTGCCTAGCCA
TTCGATCTGGCACTATTAGCCG
>SNPs
SSSSSSSSSSSSSSSSSSSS-----------------------------------------------------------S
S----------------------------S--S-----S-----------------------------------------
---------------------------------S------------------------------------SS--------
------------------------S--------------------------S----------S-----------------
-----------------------------------------------------------------SSS---S-------S
-S-----S--S-S----S----S----S-------------------------------------S------------S-
--------------------------------------------S----------------------------------S
---SS--------------------------------------------------------S------------------
--------------------------------------------------------------------------------
-------S------------------SSSSS-------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------SSSS--------S-
-------------------SS-----------S-----S-----S------------------S----------------
--------------------------------------------------------------------------------
--------------------------------------S---------S-------------------------------
-----------------------------------------------S-----------------------S-S------
-----------------------S--S-----------------S---------------------S-------SSSSSS
SSSSSSSSSSSSSSSSSSSSSSS------------------------------------------S--------------
---------------------------------S----------S-----------------------------------
S-------------------------SSSSSS------------------------------------------------
------------------------------S--S--S----S---------------S----------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------S----------
-----------S------------------S-SSS---------S------S--S--------------S----------
--------------------------------------------------------------------------------
---------------------------------------------S--SS------------------------------
-------------------------------SS----------------------------SS-----------------
------------------S-----------S--------S-SS-----S---SS----------------S---------
----SS---------S---------------------------S----S---S--S------------------------
--------------------------------------SS-SSSSSSSS-S-----------S-----------------
------------------------------------------------------------------------S-------
--------------------------------------------------------------------------------
---------------S----------------------------------------------------------------
--------------------------------SS----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------S-----------------S------S----------S-----S-----------------
-----------------------------------------------------------S----------------S---
---------S----------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------S------------------------------------------------S-----------
--------S---SS---------------------S----------------------------------------S---
--------------------------------------------------------------------------------
---S----------------------------------------------------------------------------
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-------------------S------------------------------------------------------------
-------S------------------------S----S---------------------S--------------------
-------------------S----------S----------------------------------------S--------
----S---------S-------------S-------------S----------------S--------------------
--------------------------S-----------------------------------------------------
-------------------------------------------------------------S-----------------S
---S--S-------S-------S---------------S------------S----------------------------
--------------------------SS------S-SS---S-----------SS-------------------------
-S------------S-------
>forward_466
--------------------------------------------------------------------------------
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----------------------------------------------CAGCCTCTCATTTGCACGAC--------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------
>reverse_2203
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------AACAAGCGAAGCAAAACCCC------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------
>forward_2143
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------AGACGCGGGAAGGAAAAACA-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------
>reverse_4353
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------TCATGTCGGAAGGGGCAAAT----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------
