>input_sequence_43497
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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-------------------------------------------------------------------------------A
TGAGGCCTGCACAGCCGACGGGCTTTCGTAGTCTCGTAG-------AAAAAAACTCCGAGGCTCCAAGGTCTCCACGCCT
CCACCGCCCCACTCACAACCTTATCGTCGCCGCGGCACGAGCAAAGATGGCGCCGCCGGCAGCAGCGCCGCCTCCCGCCA
TGTCCGCCCTCCCCACCTTGGCCTCCTCGCACCCATACCCTTCCCTCCCCACGCCCAAAACCGCCGCCCCCAAACCACGC
CTCACCCTGGCCTATGCCGGCGCCGCCGCGGCTCCCAATGCCGTCCCCCACCGCAGCGCCGCCGCCTCCAACGACCGCCT
GCGAGGGCTGGTCCGCCGCGGCGACCTCGAGGGGGCCCTCCGGCTCGTCGAGTCCATGGCGGGCCTCGACCCTTCCGCGG
CCGCCGCCGCACCGGGGCCCTGCGCCGCGCTCATCAAGAAGCTGTGCGCGTCCGGGCGCACCGCGGAGGCCCGGCGCGTG
CTGGCCGCCTGCGAGCCCGACGTCATGGCCTACAACGCCATGGTCGCCGGGTACTGCGTCACGGGGCAGCTCGACAACGC
GCGCCGGCTCGTCGCGGCGATGCCCATGGAGCCCGACGCCTACACCTACAACACCCTCATCCGCGGCCTGTGCGGGCGCG
GCAGGACCGACAATGCCCTCGCGGTGCTCGACGATATGCTCCGCCGTGGGTGCGTCCCCGACGTGGTCACCTACACCATC
CTGCTCGAGGCCACCTGCAAGAGGAGCGGGTACAAGCAGGCCATGAAGCTGCTCGACGAGATGCGCGACAAGGGGTGCGC
CCCGGACATAATCACCTACAACGTCATCGTCAACGGCATTTGCCAGGAAGGGCGGGTCGATGACGCCATGGAGTTCTTGA
AGAGCCTGCCGTCCAACGGATGCGAGCCGAACACCGTCAGCTACAACATTGTGTTGAAGGGCTTGTGTACCGCGGAGCGG
TGGGAGGACGCCGAGAAGCTCATGGCTGAGATGAGTCGCAAGGGGTGCCCCCCAAATGTGGTGACATTCAACATGCTCAT
CAGCTTTTTGTGCCGGAGAGGATTGGTTGAGCCTGCGATGGAGATTCTTGATCAGATCCCAAAGTACGGGTGCACGCCCA
ATTCGTTGAGCTACAACCCGATACTTCACGCGTTCTGCAAGCAAAAGAAGATGGATAGAGCCATGGCGTTTGTGGAACTG
ATGGTGTCCAGCGGCTGTTACCCCGACATCGTCTCATACAACACTCTTCTTACCGCGCTGTGTCGCGGTGGGGAGGTTGA
TGCCGCTGTTGAGTTGCTTCATCAACTCAAGGACAAAGGCTGCACCCCTGTCTTGATTAGCTACAACACCGTCATCGATG
GCCTTACCAAAGCCGGCAAGACAGAGGAAGCTTTAGAGCTGCTGAATGAAATGGTAACCAAAGGGCTCCAGCCGGATATA
ATCACTTACTCGACAATATCTTCTGGCCTTTGTCGGGAAGACAGAATCGAAGAAGCGATCAAAGCATTTTGTAAAGTGCA
AGACATGGGCATAAGGCCCAACACTGTGCTGTACAACGCGATACTTCTTGGGCTTTGCAAAAGGCGTGAAACACATAGTG
CTATCGATCTGTTTACCTACATGGTATCAAATGGCTGCATGCCAAACGAATCGACTTACACTATATTGATTGAAGGCTTG
GCTTATGAAGGCCTGGTCAAGGAGGCACGGGAAATGCTGGCTGAGTTGTGCTCCAGAGGGGTGGTGAGTAAGACTTTGGT
AAATAAGGGAGCCATTCGGTTACTTGATGCTTGA----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------
>chr1A_1_TraesCS1A01G060500
ACTCATATTTGGGTCTCAAGAATCTTTCCCGTACATTTTGTTTCATTGTTTGATGGTATAAACCATGGTTCCTGCACGTT
TGTGCACTACTAACAACACCATGTGATAAATATGTG------ACATATGATGCAGCAGATGAGATTACACATATCAGGAA
AAATCCATCTAACCGGAAGTGCATCGAATAATAGATCCCCCATGTAATTAGCGAATGTTACCAACATATGAGCCATAAGT
AACAACAGGCTAACGGCCGCATCAAACATTAGTAACACTAGTCCTCCAAACTAGAAAAACACACTCTATCTCTATCTGTA
TTAGAGCGGATTGGGGAGGCATCGGGCGCTACCTGAGGATTGGCGACGGAGCAGAGGCTGCCCAAGCCGTCGCCGGCAAG
CAGGGAGGGCGCAGGGTACGAGGCGGACAGAGGGCAAGGGCGCGTGGCTACGGGGACCGGGAGGGGGGGAT---------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------TCACATCCGGCGAAGTCACCGGCCACCG
CAGATGAGCGCCGTCGGTCAGCGAGGAAAGAGAAACTGGACTGTCGTTGAAGAACTTGTCGTTCTGGGGCGCCGGGCCAC
CTTTACACATGGGCCTCATCTACGCGCAGCCCAACCGACATTTCTTACCAGCATTGTTCAGTCTCGTTTGTAGCCCTTTT
TCGAAGCAAGTCAACTGACTTCACTCCATACTGCTCAAAAAACAAAATTCACTCCATACGAAGATACCGTTCATTCAAGT
TTTCATTGGGCGCATTTAGCATGCCTCAAATTCATTTTCCCTTTTAATTACTCTTTTTTT---GTATAACTTTCGCACGG
GGAACTTTTATAGGAGAAGTTTGAATTCGTTCTGTTCGGATCAA------TCTTGGTTCAAAATGGTTTAAT--------
-------------------------------------AATTGCCTACATAATTTGGGCAGCCTTTGATATTTATTTTAAG
CAAAGGGCTGCCTTTTCTTTTTGGGTATATCCTTTGCTGCTTTTTTGTT-------------------------------
-----------------------------------------------TGAGAAATGGAAGCCCAATTACGTTAGCGAAAA
TGAGGCCTGCACAGCCGACGGGCTTTCGTAGTCTCGTAG-------AAAAAAACTCCGAGGCTCCAAGGTCTCCACGCCT
CCACCGCCCCACTCACAACCTTATCGTCGCCGCGGCACGAGCAAAGATGGCGCCGCCGGCAGCAGCGCCGCCTCCCGCCA
TGTCCGCCCTCCCCACCTTGGCCTCCTCGCACCCATACCCTTCCCTCCCCACGCCCAAAACCGCCGCCCCCAAACCACGC
CTCACCCTGGCCTATGCCGGCGCCGCCGCGGCTCCCAATGCCGTCCCCCACCGCAGCGCCGCCGCCTCCAACGACCGCCT
GCGAGGGCTGGTCCGCCGCGGCGACCTCGAGGGGGCCCTCCGGCTCGTCGAGTCCATGGCGGGCCTCGACCCTTCCGCGG
CCGCCGCCGCACCGGGGCCCTGCGCCGCGCTCATCAAGAAGCTGTGCGCGTCCGGGCGCACCGCGGAGGCCCGGCGCGTG
CTGGCCGCCTGCGAGCCCGACGTCATGGCCTACAACGCCATGGTCGCCGGGTACTGCGTCACGGGGCAGCTCGACAACGC
GCGCCGGCTCGTCGCGGCGATGCCCATGGAGCCCGACGCCTACACCTACAACACCCTCATCCGCGGCCTGTGCGGGCGCG
GCAGGACCGACAATGCCCTCGCGGTGCTCGACGATATGCTCCGCCGTGGGTGCGTCCCCGACGTGGTCACCTACACCATC
CTGCTCGAGGCCACCTGCAAGAGGAGCGGGTACAAGCAGGCCATGAAGCTGCTCGACGAGATGCGCGACAAGGGGTGCGC
CCCGGACATAATCACCTACAACGTCATCGTCAACGGCATTTGCCAGGAAGGGCGGGTCGATGACGCCATGGAGTTCTTGA
AGAGCCTGCCGTCCAACGGATGCGAGCCGAACACCGTCAGCTACAACATTGTGTTGAAGGGCTTGTGTACCGCGGAGCGG
TGGGAGGACGCCGAGAAGCTCATGGCTGAGATGAGTCGCAAGGGGTGCCCCCCAAATGTGGTGACATTCAACATGCTCAT
CAGCTTTTTGTGCCGGAGAGGATTGGTTGAGCCTGCGATGGAGATTCTTGATCAGATCCCAAAGTACGGGTGCACGCCCA
ATTCGTTGAGCTACAACCCGATACTTCACGCGTTCTGCAAGCAAAAGAAGATGGATAGAGCCATGGCGTTTGTGGAACTG
ATGGTGTCCAGCGGCTGTTACCCCGACATCGTCTCATACAACACTCTTCTTACCGCGCTGTGTCGCGGTGGGGAGGTTGA
TGCCGCTGTTGAGTTGCTTCATCAACTCAAGGACAAAGGCTGCACCCCTGTCTTGATTAGCTACAACACCGTCATCGATG
GCCTTACCAAAGCCGGCAAGACAGAGGAAGCTTTAGAGCTGCTGAATGAAATGGTAACCAAAGGGCTCCAGCCGGATATA
ATCACTTACTCGACAATATCTTCTGGCCTTTGTCGGGAAGACAGAATCGAAGAAGCGATCAAAGCATTTTGTAAAGTGCA
AGACATGGGCATAAGGCCCAACACTGTGCTGTACAACGCGATACTTCTTGGGCTTTGCAAAAGGCGTGAAACACATAGTG
CTATCGATCTGTTTACCTACATGGTATCAAATGGCTGCATGCCAAACGAATCGACTTACACTATATTGATTGAAGGCTTG
GCTTATGAAGGCCTGGTCAAGGAGGCACGGGAAATGCTGGCTGAGTTGTGCTCCAGAGGGGTGGTGAGTAAGACTTTGGT
AAATAAGGGAGCCATTCGGTTACTTGATGCTTGATGGAACTATGCATACTTAAAAAGGTTGACCAGACCAGTAGGAGTGT
GTGGATCCAGGAGTATGTTCTTGTGCATCTTCGGCAGTACGTAGAGATACTAAATTGTTCTTAATGATGTCTTATTCGAC
GCTGTGTTCTTCTGAACATGTGAGTGTCCTTTCTTAATGTGAAGCGCACAGCCTCCTCCAGTTCAACTTGCTAGAAACTT
GTACAGCCTCCTCCAGTTCAACTTGCTAGAAACTTCGTTTTTTTTTTGTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNAAGGGACGCCTCACCCTCAAAAAAAAAGAAAAGAAAAGGGACGCCTCCTCAAGC
GACCCCACCTCGCGCTCCCGATGCTGCGCTGACACCTCCTCCCCTTCTCTCACGGCCTCTACAAGCATCCGCAAATCTTC
CCTCTCCCATAATCTCCTGTTTTGCCTCTCAATCACGAATCAGGATCCATGGAGGTTTCCGACAAGTGCTACTCGATCTG
CTATACGGCAGCGGCCGGGACCGCCGGCCGTGGGTCTGCGTCTCGCTGCTCATCCTCGGGAGGGAACTCGGTGTTGGCGA
GGTTCCATGGAGTGCCAAGCGGGGACGAGCATGACCTTCTATTCCCCGGCTCTTCACCGACCCCAGGAAGATCGATGATG
GGGATCGAAGCGCCGGTGCTCCAATCCGGTGGAGGGGTGGGGGCGGAGGTGCAGGCCCAAAACACTACCCAGAA
>chr1D_46
---------------------------------------------TTGTTTGATGGTAGAATCAATCCTTCCTACACGTT
TGTGCAGTACTAACAACACCGTGTAATAAATATGTAGTACAAACATATGATACAGCAGATGAGATT--ACATATCAGGAA
AAATCCATCTAACCA-AAGTGCATCGAATAATAGATCCCC-ATGTAATTAGCGAATGTTACCAACACATGAGCCATAAGT
AACAACAGGCTAACGGCCGCATCAAGCATTAGTAACACTAGTCCTCTAATCTACAAAAGCATACTCTATCTGTAC-----
-TAGAGCGGATTGGGGAGGCATCGGGCGCTACCTGAGGGTTGGCGACGGAGCAGAGGCTGCCCAGGCCGTCGCCGGCAAG
TA-GGAGGGCGCAGGATACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCACATGAGGCGAAGCCACTGGCCACCG
CAGATGAGCGCCGTCGGTCGGCGAGGAAAGAGAAACTG-----TCGTTGAAGAACTCGTCGTTCTGGGCTGCCAGGCCGC
CTTTACACATGGGCCTCATCTACGTGCAGCCCAACCGACATTTCTTACCAGCATTGTTCAGTCTCGTTCGTTGCCCTTTT
TCGAAGCAAGTCAACAGACTTCACTCCATACTGCTCAAAAAACAAAATTCACTCCATACGAAGATACCGTTCATTCAAGT
TTTATTTGGGCACATTTAGCATGCCTCAAATTCATTTTCCCTTTCAATTACTCTTCTTTT---GTATGAATTTCGCACGG
GGAACTTTTATAGGAGAAGTTTGAATTCGTTCTATTCGGATCA------GTCTTGGTTCAAAATGGTTTAAT--------
-------------------------------------AATTGCCTACATAATTTGGGCAGCCTTTGATATTTCTTTTAAG
CAAAGGGCAGCCTTTTCTTTTTGGGTATATCCTTTGCTCTCTTTTTTGAGACATTGGGTATATCCTTTGCTAAAGCTTTT
TTCTTTTAGGATCATCCTTTGCTAAAGCTAGATCCGCAAAAGATGCATGAAAAATGAG-GCCCAATTACGTTAGCGAAAA
TGAGGCCTGCACAGCCAACGGGC-TTCGTAGTCTCGTAG-------AAAAAAACTCCGAGGCTCCGAGGTCTCCACGCCT
CCACCGCCCCACTCACAACCTTATCGTCGCCGCGGTACGAGCACAGATGGCGCCGCCGGCAGCAGCGCCGCCTGCCGCCA
TGTCCGCCCTCCCCACCTTCGCCTCCTCCCACCCATACCCTTCCCTCCCCACTCCCAAAACGGCCGCCCCCAAACCACGC
CTCACCCTGGCCTACGCCGGCGCCGCCGCGGCTCCCAATGCCGTCCCCCACCGCAGCGCCGCCGCCTCCAACGACCGCCT
GCGAGGCCTGGTCCGCCGCGGCGACCTCGAGGAGGCCCTCCGGCTCGTCGATTCCATGGCGTCCGCCGCCTT--------
-CGCCG------CGGGGCCCTGCGCCGCGCTCATCAAGAAGCTGTGCGCGTCCGGGCGCACCGCGGAGGCCCGGCGCGTG
CTGGCGGCCTGCGAGCCCGACGTCATGGCCTACAACGCGATGGTCGCCGGGTACTGCGTCACGGGGCAGCTCGACAACGC
GCGCCGGCTCGTCGCGGCGATGCCCATGGAGCCCGACGCCTACACCTACAACACCCTCATCCGCGGCCTGTGCGGGCGCG
GCAGGACCGATAACGCCCTCGCGGTGCTCGACGATATGCTCCGCCGGGGGTGCGTGCCCGACGTGGTCACCTACACCATC
CTGCTCGAGGCCACCTGCAAGAGGAGCGGGTACAAGCAGGCCATGAAGCTGCTCGACGAGATGCGCGACAAGGGGTGCGC
CCCGGACATAATCACCTACAACGTCGTCGTCAACGGCATTTGCCAGGAGGGGCGAGTGGATGATGCCATGGAGTTCTTGA
AGAGCCTGCCGTCCAACGGATGCGAGCCGAACACCGTCAGCTACAACATTGTGTTGAAGGGCTTGTGCACCGCGGAGCGG
TGGGAGGACGCCGAGAAGCTCATGGCTGAGATGAGTCGCAAGGGGTGCCCCCCGAATGTGGTGACATTCAACATGCTCAT
CAGCTTTTTGTGCCGGAGAGGATTGGTCGAGCCTGCGATGGAGATTCTTGATCAGATCCCAAAGTACGGGTGCACGCCCA
ATTCATTGAGTTACAACCCGATACTTCACGCGTTCTGCAAGCAAAAGAAGATGGACAGAGCCATGGCGTTTGTGGAACTG
ATGGTGTCCAGCGGCTGTTACCCCGACATTGTCTCATACAACACTCTTCTTACTGCGCTGTGTCGTGGTGGGGAGGTTGG
TGCCGCCGTTGAGCTGCTTCATCAACTCAAGGACAAAGGGTGCACCCCTGTCTTGATTAGCTACAACACCGTCATCGATG
GCCTTACCAAAGCCGGCAAGACAGAGGAAGCTTTAGAGCTGCTGAATGAGATGGTAACCAAAGGGCTCCAGCCGGACATA
ATCACTTACTCGACAATATCTTCTGGTCTTTGTCGGGAAGACAGAATCGAAGAGGCGATCAAAGCATTTTGTAAAGTGCA
GGACATGGGCATAAGGCCCAACACTGTGCTGTACAACGCGATACTTCTTGGGCTTTGCAAAAGGCGCGAGACACACAGTG
CTATCGATCTGTTTACTTACATGGTGTCAAATGGCTGCATGCCAAATGAATCAACCTACACTATATTGATTGAAGGCTTG
GCTTACGAAGGCTTGGTCAAGGAGGCACGGGAAATGCTGGCTGAGTTGTGCTCCAGAGGGGTGGTGAGTAAGACTTTGGT
AAATAAGGGAGCCATTCGGTTACTTGATGCTTGATGGAACTATGCATACTTAAAAAGGTTGACCAGACCAGTAGGAGTGT
GTGGATCCAGGAATATGTTCTTGTGCATCTTAGGCAGC----AGAGATACTTCATTGTTCTTAATGATGTCTTATTCGAC
GCTGTGTTCTTATGAACATGTGAGTGTCCTTTCTTAATGTGAAGCGCACAGCCTCCTCCAGCTCAACTTGCTACAAACTT
GTACAG--------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------
>chr1B_687
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------------------------CTAAAAAAACAGACTTCACTCCATATGAAGATACCGTGCATTCAAGT
TTTCATTGGGCACATTTAGCATGCCTCGAATTCATTTTTTCTTTGAATTACTCTTTTTTTTGTGTATAGATTTCGCACGG
GAAACTTTTATAGGAGAAGTTTGAATTCGTTCTATTCAGATATTGAGCGGTCTTGGTTTGAAATGGTTTAATTTTTTAGG
CTTTTTTAGCAAAAAAAAAGGCTATTTGAAATGGTTTAATTGCCTGCATAATTTGGGCAGCCTTTGCTCTCTTTTTTTTG
AGC-----------------------------------------------------------------------------
------------------TTGCTAAAGTTATGTCCACAAAAGATGCATGAAAAATGGAAGCCCAGATACGTTAGAGAAAA
TGAGGCCTGCACAGCCAACGGGC-TTCGTAGTCTCGTAGGTGTAGAAAAAAAACTCCGAGGCTCGGAGGTCTCCACGCCT
CCACCGCCCCACTCACAACCTTATCGTCGCCGCGGCCTGAGCACAGATGGCGCCGCCGGCAGCAGCGCCGCCTCCCGCCA
TGTCCGCCCTCCCCACCTTCGCCTCCTCCCACCCATACCCTTCCCTCACCACGCCCAAAACCGCCGCCCTCAAACCGCGC
CTCAACCTGGCCTATGCCGGCGCCGCCGCGGCCCCCAATGCCGTCCCCCACCGCAGCGCCGCCGCCTCCAACGACCGCCT
GCGGGGTCTGGTCCGCCGCGGCGACCTCGAGGAGGCCCTCCGGCTCGTCGAGTCCATGGCGGGCATCGAGCCGTCCGCGG
CCGCCG------CGGGGCCCTGCGCCGCGCTCATCAAGAAGCTGTGCGCGTCCGGGCGCACCGCGGAGGCCCGGCGCGTG
CTGGCCGCCTGCGAGCCCGACGTCATGGCCTACAACGCGATGGTCGCCGGGTACTGCGTCACGGGGCAGCTCGACAACGC
CCGCCGGCTCGTCGCGGCGATGCCCATGGAGCCCGACGCCTACACCTACAACACCCTCATCCGCGGCCTGTGCGGGCGCG
GCAGGACCGACAACGCCCTGGCGGTGCTCGACGATATGCTCCGCCGGGGGTGCGTGCCCGACGTGGTCACCTACACCATC
CTGCTCGAGGCCACCTGCAAGAGGAGCGGGTACAAGCAGGCCATGAAGCTGCTCGACGAGATGCGCGACAAGGGGTGCGC
CCCGGACATCATCACCTACAACGTCGTGGTCAACGGCATTTGCCAAGAGGGGCGAGTCGATGATGCCATGGAGTTCTTGA
AGAGCCTGCTGTCCTATGGATGCGAGCCAAACACGGTCAGCTACAACATTGTGCTGAAGGGCCTGTGCACCGCAGAGCGG
TGGGAGGACGCCGAGAAGCTCATGGCTGAGATGAGTCGCAAGGGGTGCCCCCCAAATGTGGTGACATTCAATATGCTCAT
CAGCTTCTTGTGCCGGAGAGGATTGGTCGAGCCTGCGATGGAGATTCTTGAGCAGATCCCAAAGTACGGGTGCACGCCCA
ATTCGTTGAGTTACAACCCAATACTTCACGCATTCTGCAAGCAAAAGAAGATGGACAGAGCCATGGCGTTTGTGGAACTG
ATGGTGTCCAGTGGCTGTTACCCCGACATCGTCTCATACAACACTCTTCTTACCGCGCTGTGTCGCGGCGGGGAAGTTGA
TGCCGCTGTTGAGCTGCTTCATCAACTGAAGGACAAAGGCTGCACCCCTGTCTTGATTAGCTACAACACCGTCATCGATG
GCCTTACCAAAGCCGGCAAGACAGAGGAAGCTTTAGAACTGCTGAATGAGATGGTTACCAAAGGGCTCCAACCGGACATA
ATCACTTACTCGACAATATCTTCTGGTCTTTGTCGGGAAGACAGAATCGAAGAAGCGATCAAAGCATTTTGTAAAGTGCA
AGACATGGGCATAAGGCCCAACACTGTGCTGTACAACGCGATACTTCTTGGGCTCTGCAAAAGGCGTGAAACACACAGTG
CTATCGATCTGTTTACTTACATGATATCGAATGGCTGCATGCCAAATGAATCGACCTACACTATATTGATTGAAGGCTTG
GCTTACGAAGGCTTGGTCAAGGAGGCACGGGAAATGCTGGCTGAGTTGTGCTCCAGAGGAGTGGTGAGTAAGACTTTGGT
AAATAAGGGAGCCATCCGGTTACTTGATGCTTGAAGGAACTATGCATACTTAAAAAGGTTGAGCAGACCAGTAGGAGTGT
GTGGATCCAGGAATATGTTCTTCTGCATCTTCGGCAGTACGTAGAGATACTTCATTGTTCTTAATGATGTCTTATTCGAT
GCTGCCTTCTTATGAACATGTGAGTCTCCTTTCTTAATGTGAAGCGCACAGCCTCCTCCAGTTCAACTTGCTACAAACTT
GTACAG--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------S--S-S--SS-----S------
------S-------------S---S----------S---------------S--------------SS------------
--------------SS------------------------S-------------------------S-------------
-------------------------S--------------------S--S---S----S--S---------S--SSSSSS
S-------------------------------------S-------------------------S---------------
S-S------------S----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------SS-------S---S--------
-------------------S------------------SSSSS-------------S-----------SS---S----S-
------------------------S-------------------------------------------S--S--------
---------------S----------------------------------------------------------------
-----------S--------------------------------S------------------------S----------
---------------------------------S---------S------------------------------------
------------------------------------------------------------------------S-------
--------S-----------------------------SSS-----SSS-------------------------------
--------------------------------------------------S-----------------------------
----------------S------S-----------------------------------------S--------------
-------------------------------------------S------------------------------------
-------------------S--------S---------------------------------------------------
--------------------------------------------------------------------------------
------S-------------------------S-------------------------------S-------S-------
------SSSSSS--------------------------------------------------------------------
--------------------------------------S-----------------------------------------
--------------------------------------------------------------------------------
-------------S--------------------------------S--------S------------------------
--------------------------------------------------------------------------------
-------------------------S----------------------S-----S--------S----------------
-------------------------------------------------------------------S------------
--------------------------------------------------------------------------------
---------------------------S----------------------------------------------------
----------S--------------------------------------------S------------------------
--------------------------------------------------------------------------------
-------------S------------------------------------------------------------------
-------------------------------------------------S--------------------------S---
--------------------------S-----------------------------------------------------
---------------------------------------------------------------------------S----
----------------S-----------------------------S--------S------------------------
-----S------S-------------------------------------------------------------------
--------------------------------------------------------------------------------
------------S--------------------------------------SS---------------------------
-----------S-------------------------------------------------------------S------
------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_788
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------GGATTCACATCCGGCGAAGT------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------
>reverse_2508
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------TGAGCCTGCGATGGAGATTC---------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------
>forward_905
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----CACATGGGCCTCATCTACGC-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------
>reverse_2616
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------TAGAGCCATGGCGTTTGTGG-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------
>forward_2571
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------CACGCCCA
ATTCGTTGAGC---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------
>reverse_4114
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------ACCTTCTATTCCCCGGCTCT---------------------------
--------------------------------------------------------------------------
