>input_sequence_43458
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--------------------------ATGGCGCATCACCGGCGCCGCAGCTGCCTGCGCCGTGTCCTCACCATCGCCGGC
GGTGTGTCGGCCGGCCTCCTCCTGCTCGCCGGCGGCCATACCTACGCCCACGGCCAGCTCTTCTCGCCGGGCTTGCTGCC
CC------TCGGCCTCGGCGCCGACTGCTCGCCGTCCTTCGCCCCGCCCCCCTTCGCCCCGCCGCCCTTCGCCCCGCCGC
CCTTCGCCCTCTCGCCGCTGCCACCCTACCTCCTGTCAGACTTGGAGGCCGACGCCTCACCGCCGCAGCCGGAAGCCAAC
CTCCCGCGGCGCCTTCTGCCCATCCACCGCTCGCCGCCCTGCCTCCCCTCGAA---------------------------
--------------------------------------------------------------------------------
----------------CTCGGAATCGGGGGCCGACCGCTCGCCGCCGCAGC-----------------------------
----------------------------------------------------------------ACGACGACGCGGATGC
TGTCTTGCTCCCGGACTGGGAGGTTCTTGTCCTGACTGACGCTGAGCCTGGCGCC---------------AAGGCGACGT
GCGCCTTCCAGGGTGGAGCGTCGTCCCCGGCGAGCGCGCTTGGGAGGCTGCCGGGGTCGGGCCGCCACGCCTACATCTGC
CCAATGCCCGAGCCTGCCCGGAGCCTCCAGCCGCTCCAAGCGCCCGTGCTGCTCCCCACTTCGGCTTCCTCTGCCGATTG
CCCTGGCCGCGCA---TTGCTGAATTGGACCGGCCGGATCGCGTTCAGCTCTGCATCTCTCGACAGTGGCCATGTTCTTG
TCTTTGCAAAGGGCGTCAACCATGTTGCTGGCGGTGTCCAATGCCTGTATCGCTACTGTGGCGAGAC------CCATGCC
GTGGTGGCCTCCTTCCCTGCCATCACGTCCGTACAGCAGGTTACCCGGTGCCCCGCTCCACCGATCCATCTGAACTCTAG
GAACACAGAGTTCCGTGTCACCGTGGCAGCCACGGGCGAGGATCCAATCCCCACACTCGTGACTTATCGTCCATGGCAGA
GTGAAAGTGGCTTGCCGGTGGCACCGGA---AAAGAACCTGATTTGTGCATGCACTATGATTCACAATGTCTCAAAGTTT
CTTCGCGAATGGGTGCTGTATCATGCCGCTGTCGGGGTGGACCACTTCATCCTGTACGACAATGGAAGTAAGGATGACTT
GGCAGATCAAGTTGCCCAGTTGAGGTCAGCCGGAATCAGCATCTCCACCGTGCCTTGGCCGTGGATCAAAATGCAGGAAG
CCGGCTTCTCCCATTGTGCCGCAACGCACCAGAGCTCTTGCAAGTGGATGGCCTTTATTGACGTCGACGAGTTCGTTTTT
TCGCCCAACTGGGAACGATCTGAGAAGCCGTCAAAATCGATGCTTGAGGCGATTGTTCAGGTTGATCCAGATGTCGGGCA
GGTACATCTGTGGTGCTTTGATTTTGGCCCCTCTGGCCAAACATCACACCCACAGGAGGGCGTCATCCAAGGATACACAT
GCCGTCTGAAGAGGTTTCTGAGGCACAAATCGCTGGTTCTGCTTGCTGCAGTGGACCATTCTTTGGAGAATGCAATTCAC
CACTTCACACTGAAGGCTGGTTTCAAAAGTATACGGAGCATGCAGGCACGTGTGAACCATTATAAGTACCAGGCATGGAC
CGAGTTCAAGCATAAGTTCAAACGACGAGTGTCTGCCTACGTGGCTGACTGGAGAGATCCAATCAACCTTGAGTCCGCTG
ACCGGGCCCCCGGCTTAGGCGTTGATGGAGTCGAACCGGTTGATTGGGCGCAAAGGTATTGCGACATCAAGGATAACCTG
CTTCAGAAATTGAGCTCAAGATGGTTCGGTAATGGATTGGGAAGTCCGGGATCTCAGGATACTTAG--------------
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-------------------------------
>chr4A_1_TraesCS4A01G230900
CTCCTGCCTCCGCCACCCTCCCCTGGCTCCGCGGACCTCCTACACCCACCCCCGCAACCTCCACCGTCCTCCCCCGCTCG
CCCGCCACTGCGCCACGACCTCCCTTGCTTGCCAC---------CGACGGCCGCTGCTCACCCCACTCCCCTGGATCGGC
TCCGGCGACCTGAAGGTACCTGATCGGCCGTCCTCGCCTGCTCCGGCCGGCGGGCTCCCTTGCCTGACTCGGCCCCGGCG
ACCTCGACGGCACCGCCCTTCTCCGGCGACCACACCGGCTGGTCCTGCTCCAACGATCGAGTCACGCCGGTACTGTCACG
CCCCTGTCCC----------------------------------TGCTGCTTGTGTTGCTGATTTTTTGGT--ATTGATT
GAAGTCGC------TGCGTGATTCAGTCAATTCCTTCA-----------------------------------TCAGATT
TCATCACCAATTGGACGGATTTGGTTATATCGGCATGAATCACTTTGGATTTTTTGAGGGAGGGAGTGTATCCCTGTACC
TAT------CTCTTCGGTTTTGTCCCTGAAAAAAAA-----GTTTTTAATCGAAAATTGGGGCGAAACATGCTGAACGCC
GTATACGTACTGAACTCTACCGTATACGTATTCGGGCCCAGACTAAATAAAATGTTGACTTTATTATCGA-GAAAGAA--
-----------------------AAAAAA--ATCCAGCAACGTGACATAGAACCAGCCTGATCTTGATAGCGTGCGAG--
AAAAAAAAAGAGATCGACGCTCGACCACGGCCCACGGGCAGACCCGAAGGAACAGCTGGCGTCGAACCCAAACCTC----
----GCTGCCTCGGTCGGTCGGTAGCCT-------GTA---CACCCTATACGTAGAAAATAAGCTACCGTATGCGTAGAA
AATACGCTACCGTATGCGTAGCGAACACGCTACCATATACGTACCGTAGTCGGACCCGATACACCGTATAATACAGGTCG
TCGACGCCCTAATTTGGCAAAAGCTTTTCCGCGCAATCGATCGC-AGAGTTTTCGCGCGAACAAGAAACCTCCAGCTCCC
CGCTCCGCTCGAATCGCCCCGTCGCCATGGCGCATCACCGGCGCCGCAGCTGCCTGCGCCGTGTCCTCACCATCGCCGGC
GGTGTGTCGGCCGGCCTCCTCCTGCTCGCCGGCGGCCATACCTACGCCCACGGCCAGCTCTTCTCGCCGGGCTTGCTGCC
CC------TCGGCCTCGGCGCCGACTGCTCGCCGTCCTTCGCCCCGCCCCCCTTCGCCCCGCCGCCCTTCGCCCCGCCGC
CCTTCGCCCTCTCGCCGCTGCCACCCTACCTCCTGTCAGACTTGGAGGCCGACGCCTCACCGCCGCAGCCGGAAGCCAAC
CTCCCGCGGCGCCTTCTGCCCATCCACCGCTCGCCGCCCTGCCTCCCCTCGAA---------------------------
--------------------------------------------------------------------------------
----------------CTCGGAATCGGGGGCCGACCGCTCGCCGCCGCAGC-----------------------------
----------------------------------------------------------------ACGACGACGCGGATGC
TGTCTTGCTCCCGGACTGGGAGGTTCTTGTCCTGACTGACGCTGAGCCTGGCGCC---------------AAGGCGACGT
GCGCCTTCCAGGGTGGAGCGTCGTCCCCGGCGAGCGCGCTTGGGAGGCTGCCGGGGTCGGGCCGCCACGCCTACATCTGC
CCAATGCCCGAGCCTGCCCGGAGCCTCCAGCCGCTCCAAGCGCCCGTGCTGCTCCCCACTTCGGCTTCCTCTGCCGATTG
CCCTGGCCGCGCA---TTGCTGAATTGGACCGGCCGGATCGCGTTCAGCTCTGCATCTCTCGACAGTGGCCATGTTCTTG
TCTTTGCAAAGGGCGTCAACCATGTTGCTGGCGGTGTCCAATGCCTGTATCGCTACTGTGGCGAGAC------CCATGCC
GTGGTGGCCTCCTTCCCTGCCATCACGTCCGTACAGCAGGTTACCCGGTGCCCCGCTCCACCGATCCATCTGAACTCTAG
GAACACAGAGTTCCGTGTCACCGTGGCAGCCACGGGCGAGGATCCAATCCCCACACTCGTGACTTATCGTCCATGGCAGA
GTGAAAGTGGCTTGCCGGTGGCACCGGA---AAAGAACCTGATTTGTGCATGCACTATGATTCACAATGTCTCAAAGTTT
CTTCGCGAATGGGTGCTGTATCATGCCGCTGTCGGGGTGGACCACTTCATCCTGTACGACAATGGAAGTAAGGATGACTT
GGCAGATCAAGTTGCCCAGTTGAGGTCAGCCGGAATCAGCATCTCCACCGTGCCTTGGCCGTGGATCAAAATGCAGGAAG
CCGGCTTCTCCCATTGTGCCGCAACGCACCAGAGCTCTTGCAAGTGGATGGCCTTTATTGACGTCGACGAGTTCGTTTTT
TCGCCCAACTGGGAACGATCTGAGAAGCCGTCAAAATCGATGCTTGAGGCGATTGTTCAGGTTGATCCAGATGTCGGGCA
GGTACATCTGTGGTGCTTTGATTTTGGCCCCTCTGGCCAAACATCACACCCACAGGAGGGCGTCATCCAAGGATACACAT
GCCGTCTGAAGAGGTTTCTGAGGCACAAATCGCTGGTTCTGCTTGCTGCAGTGGACCATTCTTTGGAGAATGCAATTCAC
CACTTCACACTGAAGGCTGGTTTCAAAAGTATACGGAGCATGCAGGCACGTGTGAACCATTATAAGTACCAGGCATGGAC
CGAGTTCAAGCATAAGTTCAAACGACGAGTGTCTGCCTACGTGGCTGACTGGAGAGATCCAATCAACCTTGAGTCCGCTG
ACCGGGCCCCCGGCTTAGGCGTTGATGGAGTCGAACCGGTTGATTGGGCGCAAAGGTATTGCGACATCAAGGATAACCTG
CTTCAGAAATTGAGCTCAAGATGGTTCGGTAATGGATTGGGAAGTCCGGGATCTCAGGATACTTAGGCTTGGCAGTATCT
GTAACCTGCGACTGTCTAGAAGGATCCAGAGGTATTAGAGATGGAACTGTAATCTAGTTTAAACCTGTCTCCTTGCCTCC
CAAGATCAATCTAGAT-ACCAATCTGTACATCGCTTGCCACGTTCGGCACCTATAAATAAACATCACGCGGCCTCCAATG
GAGGTAGAGACGCTTCCACAATTCTCACATGGTATCACGAGTCATCTTCCTCTTTTAGCAATTCATCTACATTCATCTGA
TTATGGCGAGCTCTTCCTCCAGCTGTAGCATTTCATCGACACCGCCACCACCATCTT-GGAGGAATTTCTGTCCAGCGCT
GACAAGGATGG-AAGCAGCACTGACAAATCCTTTCATAAGGTTCACAGGATGGCAGTTTAAGTTTGTTGAAGGTATTTTT
-TTGGATTGGTTTCTTGCTCTTCGGCTATTCTCTTAAAATGCTTGGCCGGATTCCGTTGATAGTTAATATATCAATAACT
T-------------------------------TAACTCTTCAAGAATTATAATGGAGTATT-------------------
-----------------TTCTAGGTTGTCTTGATCTAGAGCTTCTATCGCCTCTTCAACAATTTATTGGCATAA------
-ACTTTTACCTGAAGCTGCCCATCAAATATCTATTCCTAATAGTACTTATACCTGACAT---CTGTCATGTGTACTGCAT
ACTGTTTGGTACGCTGTCCACTTATCCAGGATTCCATGGTCTGCAGTAATAGTGGATTTGTATTAGTGGAAGCATTATCT
AAGTGATATTTTTCAGGTTTGGTATCACTTCTGCTCCAGGTAGGACATCTTTGAGCAGGACACCATGCACAAAAGGTAAT
AACTGAGAATTCATGGGCAATGTAAAA-TTTCAGCATGATATTTTCAGGCAGTTGTTACTTGAGTGTCAGACATTTTCTG
TGTTCTTGTTTTGTTCTTTTTGTTTGGAATTAATGATTTATCCAATGCTGCACATTGCATGCACGCCGC-AAA--AAAAA
GCTTCATCTGATTTTGCTAAATGTTCTTTCT
>chr4D_22
CCTGCCTCCGCCAC---------------------CCTCCTACACCGACCCCCGCAACCTCCACCGTCCTCCCCTGCTCG
CCCGCCACTGCGCCACGACCTCCCTCGCTTCCCCCCGACGACCTCGACAGCCACTGCTCACCCC-CTCCCCTGGATCGGC
TCCGGCGATCTGAAGGCACCTGGTCGGCCGCCCTCGCATGCTCCGGCCGGCGGCGGCCCTCGCCTGACTCGGCCCCGACG
ACCTCGACGTCACCGCCCTTCTCCGGCGACCACACCACCTGGCCCTGCTCCAAAGACCGAGCCACGCCGGTACTGTCACG
CCCTGTCCCTGCTGTGCTGCTTTTTTTTTGCGGGGTCCCTGCTGTGCTGCTTGTGTTGCTGATTTTTTGGT--ATTGAAA
TGTGCTAAGTCG-TTGCGTGATTCAGTCAATTCCTTCG-----------------------------------TCAGATT
TCATCACCAATTTGACGGATTTGGTTATATCGGCATGAATCACTTTGGATTTTTT----GAGGGAGTGTATCCCTGTACC
TATAGGTAGCTCTTCTGTTTTGTCCCTGAAAAAAAAAATACGTTTTTAATCGAAAATTGGGGCAAAACATGCCGAACGCC
GTATACGTACAGAGCTCTACCGTATACGTAGACGGAAGCAGACTAAATAAAAAGTTGACTTTATTGTCGAAGAAAGAA--
-----------------------AAAAAATAATCCAGCAACATGACATAGAACCAGCCTGATCTTGATAGCGTGAGAAAA
AGAAAAAAAAAGATCGAGACTCGAC-------CACGGGCGGACCCGAAGGAACAGCTGGCGTCGAACCCAAACCTG----
----GCTGCCTCGGTCGGTCGGTAGCCT-------GTAGTAC-----------------------ACCGTATACGTAGAA
AATACGCTACCGTATGCGTAGCGAACAAGCTACCATCTACGTAGCGCAGTCGGACCCGATACATCGTATAATACAGGTCG
TCGACGCCCTAATTTGGCAAAAGCTTTTCCGCGCGATCGATCGGAAGAGTTCTCGCGCGAAAAAGAAACCTCCAGCTCCC
CGCTCCGCTCGAATCGCCCCGCCGCCATGGCGCATCACCGGCGCCGCAGCTGCCTGCGCCGTGTCCTCACCATCGCCGGC
GGTGTGTCAGCCGGCCTCCTCCTGCTCGCCGGCGGCCATACCTACGCCCACGGTCAGTTCTTCTCGCCGGGCTCGCTGCC
CCTCGGCCTCGGCCTCGGCGCCGACCGCTCGCCGCCCTTCGCCCCGCC------------------------------GC
CCTTCGCTCTCTCGCCGCTGCCGCCCTACCTCCTCTCAGATCCGGAGGCCGATGCCTCGCCCCCGCAGCCGGAAGCCGAC
CTCCCGCGGCGCCTTCTGCCCCTCCACCGCTCGCCGCCG-----------------------------------------
--------------------------------------------------------------------------------
-----CCCTACCTCCTCTCAGATTCAGAGGCCGACGCTGAGCCGCCGCAGCCGGAAACCAACCTCCCGCGGCGCCTTCGG
CCCCTCCATCGCTCGCGGCCGCCCTCGCCTTTCCTGGGCTTGGACTCGGAGGCTGATCGCTCGTACGACGACGCGGATGC
TGTCTTGCTCCCGGACTGGGAGGTTCTTGTCCTGACTGACGCTGAGCCTGGCGCC---------------AAGGCGACGT
GCGCCTTCCAGGGCGGAGCGTCGTCCCCGGCGAGCGCGCTCGGGAGGCTGCCGGGGTCGGGCCGCCACGCCTACGTCTGC
CCAATGCCCGAGCCTGCCCGGAGCCTCCAGCCGCTCCAAGCGCCCGTGCTGCTCCCCACCTCGGCTTCCTCTGCCGATTG
CCCTGGCCGCACA---TTGCTGAACTGGACTGGCCGGATCGCGTTCAGCTCTGCAACTCTCGACAGTGGCGATGTTCTTG
TCTTTGCAAAGGGCGTCAACCATGTTGCTGGCGGTGTCCAATGCCTGTATCGCTGCTGCGGCGAGAC------CCATGCC
GTGGTGGCCTCCTTCCCGGCCATCACGTCCGTACAGCAGGTTACCCGGTGCCCTGCTCCACCGGTCCATCTGAACTCCAG
GAACACAGAGTTCCGTGTCACCGTGGCAGCCACGGGCGAGGATCCGATCCCCGCACTTGCAACTTATCGTCCACGGCAGA
GTGAAAGTGGCTTGCCGGTGGCACCGGA---AAAGAACCTGATTTGTGCATGCACTATGATTCACAACGTCTCAATGTTT
CTTCGCGAATGGGTGCTGTATCATGCCGCTGTCGGGGTGGACCACTTCATCCTGTACGACAATGGAAGTAAGGATGACTT
GGCAGATCAAGTTGCCCAGTTGAGGTCTGCCGGAATCAAAATCTCTACCGTTCCTTGGCCGTGGATCAAAATGCAGGAAG
CCGGCTTCTCCCATTGTGCTGCAACGCACCAGAGCTCTTGCAAGTGGATGGCCTTCATTGATGTCGACGAGTTCGTTTTT
TCGCCGAACTGGGAACGATCTGAGAAACCGACAAAATCGATGCTTGAGGCGATTGTTCAGGTTGATCCAGATGTCGGGCA
GGTACATCTGTGGTGCTTTGATTTTGGCCCCTCTGGCCAAACATCACACCCACAGGAGGGTGTCATCCAAGGATACACAT
GCCGTCTGAAGCAGATTCTGCGTCACAAATCGCTTGTTCTACTTGCTGCAGTGGACCATTCTTTGGAGAATGCGATTCAC
CACTTCACACTGAAGGCTGGTTTCAAAAGTATACGGAGCATGCAGGCACGTGTGAACCATTACAAGTATCAGGCATGGCC
CGAGTTCAAGCATAAGTTCAAACGACGAGTGTCCACCTACGTGGCTGACTGGAGAGATCCGATCAACCTTCAGTCTGCTG
ACCGGGCCCCCGGCTTAGGAACTGATGGAGTCGAACCGGTTGGTTGGGCGCAAAGGTATTGCGACATCAAGGATAACCTG
CTTCAGCAATTGAGCGCAAGGTGGTTCGGTAGTGGATTGGGAAGTCAGGGATCTCAGGATACTTAGGCTTGGCAGTATCT
GTAACCTGCGATTGTCTAGAAGGATCCAGAGGCATTAGAGATGGAACTGTAATCTAGTTTAAACTTGTCTCCTTGCCTCC
CAGGATCAATCTAGAT-ACCAATCTGTACATCGCCTGCCACGTTCGGCACCTATAAATAAACATCAGGCGGCCTCCAATG
GAGGTAGAGACGCTTCCACAATTCTCACATGGTATCACGAGTCATCTTCCTCTTTTAGCAATTCATCTAGATTGATCTGA
TCATGGCGAGCTCTTCCTCCAGCTGTTTCGCTTCATTGACACCGCGACCGCCGTCTC-TGAGGAATTCCTGTCCTGCACT
GACAAGGATGGGAAGCAGCACTGACAAATCATTTCATAAGGTTCACAGGATGGCAATTTAAGTTTGCTGAAGGTATTTTT
-TTGGATTGGTTTCTTACTCTTCGGCTCTGCTCTTAAAATACTTGGCCGGATGCCGTTGATGGTTAATATATCAAT-ACT
T-------------------------------TAACTCTTCAAGAACTATAATTGTCTATGCAGAGGCCGGGGGTAATCC
TCCTTTTCCAAAAAGAATTCTAGGTTGTCTTGATCTAGAGCTTCTATCGCCTCTTCAACAATCTATTGGCATAAACTCTT
AACTTTTACCTGAAGCTGCCCGTCAAATATCT----CTAATAGTACATATACCTGACATTATCTGTCATGCGTACTGCAT
ACTGTTTGGTACGCTGTCCACTTATCCAGGATTACATGGTCTGCAGTAATAGTGGATTTGTATTAGTGGAAGTATTATCT
AAGTGTTATTTTTCAGGTTTGGTATCACTTCTGCTCCAGGTAGGAGATCTTTGAGCAGGACACCATGTACAAAAGGTAAT
AACTGAGAATTCATGGGCAATGTAAAA-TTTCAGCATGATATTTTCAGGCATTAGTTACTTGAGTGTCAGACATTTTCTG
TGTTCTTGTTTTGTCCTTTTTGTTCAGAATTAATGATTTATCAAGTGCTGCACATTGCATGCACGCCGC-AAA--AAAAA
GCTTCATCTGATTTTGCTAAATGTTTTTT--
>chr4A_147
--------------------------------------------------------------------------------
---------------------------------------------------------------------------TCGGC
TCCGGCGACCTGAAGGTACCTGATCGGCGGCCCTCGCT--------------------------TGACTCGGCCCCGGCG
ACCTCGACGTCACCACCCTTCTCCGGCGACCACACCACCTCGCCCTGCTCCAACGACCGAGCCACGCCCTGCTCCGTGGT
CGACTTCAACCACTTCGGTACACGCCT-------GTCCCTGCTGTGCTGCTTGTATTGCTGTTTTTTTTTCGAATAGAAA
TGTGCTAACTTTTTTGCGTGATTCAGTCAATTCCTTCACCTGACTGAGCGTTTAGTGTGGTTTTTTGGTTTCATCAGATT
TCATCACTGATTTGACGGATTTGGTTATATCGGCATGAATCAATTTGGATTTTTTTGAGGAAGT----------------
-----GTAGCTCTTTTGCTTTGTTCCTGAATAGGAG--TACGTTTTTAATCGAAAATTGGGGCGAAACATGCCGAACACC
TTATACGTACTGAACCCTACCGTATACGTATTCGGGTCCAGAATAAATAAAATGTTGACTTTATTATTGA-GAAAGAATT
TAGTCAAAAAATATTGAGAAAGAAAAAAA--ATCCAGCAACGTGACATAGAACCAGGCTGATCTTGATAGCTT--GAG--
GAAAAAAAAAAGATCGAGACTCGAC-------CACGGGCGGACCCGAAGGAACAGCTGGCGTCGAGCCCAAACCTCCAAA
CCTTGCTGCCTCGGTCGGTCGGTAGCCT-------GTA---C-----------------------ACCGTATACGTAGAA
ACTACGCTACCGTATGCGTAGCGAACACGCTACCATATACGTACCGTAGTCGGACCCGATACACCGTATAATACAGGTCG
TCGACGCCCTAATTTGGCAAAAGCTTTTCCGCGCAATCGATCGC-AGAGTTTTCGCGCGAACAAGAAACCTCCAGCTCCC
CGCTCCGCTCGAATCGCTCCGCCGCCATGGCGCATTACCGGCGCCGCGGCTGCCTGCGCCGTGCCCTCACCATCGCCGGC
GGTGTGTCGGCCGGCCTCCTCCTGCTCGCCGGCGGCCATACCTACGCCCACGGCCAGCTCTTCTCGCCGGGCTTGCTGCC
CC------TCGGCCTCGGCGCCGACCGCTCGCCGTCCTTCGCCCCGCC------------------------------GC
CCTTCGCTCTCTCGCCGCTGCCGCCCTACCTCCTCTCAGACTCGGAGGCCGACGCCTCGCCCCCGCAGCCGGAAGCCAAC
CTCCCGCGGCGCCTTCTGCCCCTCCACCGCACGCCGCCGCCCTTCGCTCTCTCGCCGCTGCGGCCCTACCTCGTCTCAGA
TTCAGAGTCCGACGCTGAGCCCCCGCAGCCGGAAACCACCCTCTCGCGGCGCCTTCGGCCCCTCCATCGCTCGCCGCCGC
CCTCACCCTTCCTGGGCTTGGACTCGGAGGCCGATCGCTCGC--------------------------------------
----------------------------------------------------------------ACGACGACGCGGACGC
AGTCTTGCTCCCGGACTGGGAGGTTCTTGTCCTGACTGACGCTGAGCCTGGCGCC---------------AAGGCGACGT
GCGCCTTCCAGGGTGGAGCGTCGTCCCCGGCGAGCGCGCTCGGGAGGCTGCCGGGGTCGGGCCGCCACGCCTACATCTGC
CCAATGCGTGAGCCTGCCCGGAGCCTCCAGCCGCTCCAAGCGCCCGTGCTGCTCCCCACCTCGGCTTCCTCTGCCGATTG
CCCTGGCCGCGCA---TTGCTGAATTGGACCGGCCGGATCGCGTTCAGCTCTGCAACACTCGACAGTGGCGATGTTCTTG
TCTTTGCAAAGGGCGTCAACCATGTTGCTGGCGGTGTCCAATGCCTGTATCGCTACTGCGGCGAGAC------CCATGCC
GTGGTGGCCTCCTTCCCGGCCATCACGTCCGTACAGCAGGTTACCCGGTGCCCCGCTCCACCGATCCATCTGAACTCTAG
GAACACAGAGTTCCGTGTCACCGTGGCAGCCACGGGCGAGGATCCAATCCCGACACTCGTGACTTATCGTCCCCGGCAGA
GTGAAAGTGGCTCGCTGGTGGCACCGGA---AAAGAACCTGATTTGTGCATGCACCATGATCCACAACGTCTCAAAGTTT
CTTCGCGAATGGGTGCTGTATCATGCCGCTATCGGGGTGGACCACTTCATCCTGTATGACAATGGAAGTAAGGATGACTT
GGCAGATCAAGTCGCTCAGTTGAGGTCCGCTGGAATCAAAATCTCTACCGTGCCTTGGCCATGGATCAAAATGCAGGAAG
CCGGCTTCTCCCATTGTGCTGCAACGCACCAGAGCTCTTGCAGGTGGATGGCCTTTATTGACGTCGACGAGTTCGTTTTT
TCGCCCAACTGGGAACGATCTGAGAAACCGTCAAAATCGATGCTTGAAGAGATTGTTCAGGTTGATCCAGATGTCGGGCA
GGTATATCTGTGGTGCTTTGATTTTGGCCCCTCTGGCCAAACATCACACCCACAGGAGGGTGTCATCCAAGGATACACAT
GCCGTCTGAAGAGGTTTCTACGGCACAAATCGCTGGTTCTGCTTGCTGCAGTGGACCATTCTTTGGAGAATGCAATTCAC
CACTTCACACTGAAGGCTGGTTTCAAAAGTATACGGAGCATGCAGGCACGTGTGAACCATTATAAGTACCAGGCGTGGAC
CGAGTTCAAGCATAAGTTCAAACGACGAGTGTCCGCCTACGTGGCTGACTGGAGAGATCCAATCAACCTTGAGTCCGCTG
ACCGGGCCCCCGGCTTAGGTGTTGATGGAGTCGAACCGGTTGATTGGGCTCAAAGGTATTGCGACATCAAGGATAACCTG
CTTCAGAAATTGAGCTCAAGATGGTTCGGTAACGGATTGGGAAGTCCGGGATCTCAGGATACTTAGGCTTGGCAGTATCT
GTAACCTGCGACTGTCTAGAAGGATCCAGAGGCATTAGAGATGGAACTGCAATCTAGTTTAAACCTGTCTCCTTGCCTCC
CAAGATCAATCTAGAT-ACCAATCTGTACATCGCTTGCCACGTTCGGCACCTATAAATAAACATCACGCGGCCTCCAATG
GAGGTAGAGACGCTTCCACAATTCTCACATGGTATCACGAGTCATCTTCCTCTTTTAGCAATTCATCTACATTCATCTGA
TTATGGCGAGCTCTTCCTCCAGCTGTAGCATTTCATCAACACCGCCACCACCATCTC-GGAGGAATTCCTGTCCAGCGCT
GACAAGGATGGGAAGCAGCACTGACAAATCCTTTCATAAGGTTCACAGGATGGCAGTTTAAGTTTGTTGAAGGTATTTTT
-TTGGATTGGTTTCTTGCTCTTCGGCTATTCTCTTAAAATGCTTGGCCGGATTCCGTTGATAGTTAATATATCAATAACT
T-------------------------------TAACTCTTCAAGAATTATAATGGAGTATT-------------------
-----------------TTCTAGGTTGTCTTGATCTAGAGCTTCTATCGCCTCTTCAACAATTTATTGGCATAA------
-ACTTTTACCTGAAGCTGCCCATCAAATATCTATTCCTAATAGTACTTATACCTGACATTATCTGTCATGTGTACTGCAT
ACTGTTTGGTACGCTGTCCACTTATCCAGGATTCCATGGTCTGCAGTAATAGTGGATTTGTATTAGTGGAAGCATTATCT
AAGTGATATTTTTCAGGTTTGGTATCACTTCTGCTCCAGGTAGGACATCTTTGAGCAGGACACCATGCACAAAAGGTAAT
AACTGAGAATTCATGGGCAATGTAAAA-TTTCAGCATGATATTTTCAGGCAGTTGTTACTTGAGTGTCAGACATTTTCTG
TGTTCTTGTTTTGTTCTTTTTGTTTGGAATTAATGATTTATCCAATGCTGCACATTGCATGCACGCCGCAAAA--AAAAA
GCTTCATCTGATTTTGCTAAATGTTCTTTCT
>chr4D_706
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------CACGGTCGGACTCGAAGGAACAGCTGGCGTCGAACCCAAACCTG----
----GCTGCATCGGTCGGTCGGTCCCGTATAGTCGGTA---C-----------------------GGCGTATACGTAGCT
AGCACGCTACCGTATACGTAC------------------CGTACCGTAGTCGGACCCGATACGGCGTATAATACCTAGCG
TCGACGCCCAAACTCGGCAAATCCAAAGCT-CGCAATCAATCGCAAAAGTTTTCGCGCGAACTCC-AATCTCCTGCTCTC
CGCTCCAATCG------CCCGCCGCCATGGCTCATCATCGACGCCGCAGCTGCCTGCGCCGTGTCCTCACCATCGCCGGC
GGTGTGTCAGCCGGCCTCCTCCTGCTCGCCGGCGGCCATACCTACGGCCACGGCCAGCTCTTCTCGCCGTCCTTGCTGCC
CC------TCGGCCTCGGCGCCGACTGCTCGCCGTCCTTCGCCCCGCCC---------------CCCTTCGCCCCGCCGC
CCTCCGCCCTCTCGCCGCTGCCGCCCTACCTCCTGTCGGACTTGGAGGCCGACGCCTCGCCCCCGCAGCCGGAAGCCAAC
CTCCCGCGGCGCCTTCTGCCCATCCACCGATCGCCGCCCTGCCTCCCCTCGAA---------------------------
--------------------------------------------------------------------------------
----------------CTCGGAATCGGGGGCCGACCGCTCGCCGCCGCAGC-----------------------------
----------------------------------------------------------------ACGACGACGCTGATGC
CGTCTTGCTCCCGGACTGGGAGGTCCTTCTCTTGGCTGACGCCGAGCTTGGCGGCGGCGCGGGCAATGGGAAGGCGACGT
GCGCCTTCCAGGGTGGGGCGTCATCCCCGGCGAGCGCGCTCGGGAGGCTGCCGGGGTCGGCCCGCCACGGCTACGTCTGC
CCAATGCCCGAGCCTGTCCGGAGCCTCCAGCCGCTCCAAGCGCCATTGCTGCTCCCCACCTCCGCTGCCTCTGCTGATTG
CCCTGGCCGCACGTCGTTGCTGAATTGGAGCGGCCCGATCGCCTTCAGCTCTGCAACTCTCGACAGTGGCGATGTCCTTA
TCTTTGCAAAGGGCGTCAACCATGCCGCTGGCGGAGTCCGGTGCATCTATCGCCACTGCGGCGACGCCCATGGCCATGGC
GTGGTGGCCTCCTTCCCGGCCATCACGTCCGTACAGCAGGTTACCCGGTGCCCTGCTCCACCGATGCATCTCAACTCCAG
GAACGCAGAGTTGCGTGTCACGGTGGCAGCCACCGGCGAAGATCCCATCCCCTCAATTGCAACTTATCGCCCACAGCAGA
GTCAGAGTGGCTTGGTGGTGACACCGGCCCGAAAGAAGTTGATTTGCGCTTGCACTATGGTCCACAATGTGTCCAAGTTT
CTTCGCGAGTGGGTGCTGTACCATGCCGCTGTCGGGGTGGAGCACTTCTTCCTGTATGACAATGGAAGTCAAGATGACTT
CGCAGATCAAGTCGCTCAGTTGAGGTCAGCCGGAATCAGCATCACTACCGTGCCTTGGCCGTGGATCAAAATGCAGGAAG
CTGGCTTCTCCCATTCTGCTGCAATGCACCAGAGTTCTTGCAAGTGGATGGCATTCATAGATGTCGATGAATTCATTTTT
TCGCCAAACTGGAAAGGATCCGAGAAACCGTCAAAATCAATGCTTGAAGCGCTTCTTCCCGTCGATCCAGACGTCGGGCA
GGTGTATCTGTGGTGCTTTGATTTTGCTCCCTCTGGCCAAACATCACACCCACAGGAGGGTGTCATCCAAGGATACACAT
GCCGTCGAAAGATTATTCTGCGGCACAAATCGCTCGTTCTTCTTGCTGCGGTGAACCATTCTTTGGAGAATGCAATACAC
CATTTCACGCTCAAGGATGGTTTTAGAAGCATACGGAACTTGCAGGCGCGGGTCAACCATTATAAATACCAGGCATGGAG
TGAGTTCAAGCATAAGTTCAAACGGCGAGTGTCCGCCTACGTGGCTGACTGGAGAGATCCGATCAACCTTCAGTCCGCTG
ATCGGGCCCCCGGCTTAGGACTTGACGGAGTTGAACCGGTTGATTGGGCGCAAAGGTATTGCGACGTCAAGGACAATCTG
CTTCAGCAGTTGAGCGCAAGATGGTTTGGTAATGGATTGGCAACTCTGGGATCTCAGGATACTTAGGCTCGACTGTATCT
ATAACCTGCGGTTTTCTAGAAGGATCTAAAGGCATTAGAGACGGAATTGTAATCTAGTTTAGACTTGTGTCCTTGCCGGC
CAAGGTCTATCTAGAAAACCAATCTGTACATCGCTTGCCATGTTAGGCACCAATAAATAAACATCACGCGGCCTCCAATG
GAGGTAGAGACGCTTCCACAATTCTCACATGGTATCACGAGCCATCTTCCTCTTTTAGCAATTCATCTAGATTGATCTGA
TCATGCCGAGCTCTTCCTCCAGCTGTAGCGCTTCATCGACACCACCAACGCCGTCTTTTGAGGAATTCCTGTCCAGCACT
GATAACGATGGGAGGCAACACTGGCAAATCCATTCATAAGGTTCATAGGATGGCAGTTTAAGGTTGCTGAAGGTATTCTT
CTTGGATTGGTTTCTTTCACTTGGGCTCGTCTCTTAGAATACTTGGCTGGAAGCCCCTGATAGTTAATACATCAATAGCT
TGGATGGTTCTGTTTTGTTCTTTTTAGATTTATAACTCTTCAAGAATTATAATGGAGTAAT-------------------
-----------------TTCTAGGTTTTCTTGAAGAAGAGCTTCTATCGCCTCTTCAGTAGTCTATTGGGATGA------
-ACTTT---CTGAAGCATCCCGTCAAATACTGATTACTATCAGTACATATACCTGATATTTGCTGTCATGTGTACTGCAT
ACTGTACGGTACGCTGTTAACTTATCCAGGATTCCACGGTCTGCAGTAATAATGGAATTTGTCAC-TGGAAGTATTATCT
AAGTGATATATTTCAGGTTTGGTATCACTTCTGCTCTAGGTAGGAGATCTTTGACCAGGATACG----------------
----GAGAATTCATGGGCAATGTAAAAATTTCAGCATGATATTTTCAGGCAGTGGTTACTTGAGTATCAGTATTCTTCTG
TGTTC-TGTTTTGTTCTTTTTGTTCAGAATTAATGATTTA-CCAGTGCTGCTCATTGCATGCTTGCCGCAAACTTAAAAA
AAAGCATCTGATTTTGATAAATGCTCTTTCT
>chr4D_1934
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-----AGTGGCTTGGTGGTGACACCGGCCCGAAAGAAGTTGATTTGCGCTTGCGCAATGGTCCACAACGTGTCCAAGTTT
CTTCGCGAGTGGGTGCTGTACCATGCCGCTGTTGGGGTGGAGCACTTCTTCCTGTATGACAACGGAAGTCTGGATGACTT
CGCAGATCAAGTCGCACAGTTGAGGTCAGCCGGAATCAGCATCTCTACAGTGCCTTGGCCGTGGATCAAAATGCAGGAAG
CTGGCTTCTTCCATTCTGCTGCAACGCACCAGAGTTCTTGCAAGTGGATGGCATTCATAGATGTCGACGAATTCATTTTT
TCGCCAAACTGGAAAGGATCCGAGAAACCGTCAAAATCAATGCTTGATGCGCTTCTTCCCGTCGATCCAGACGTCGGGCA
GGTGTATCTGTGG-----TGATTTTGCCCCCTCTGGCCAAACATCACACCCACAGGAGAGTGTTATCCAAGAATACACAT
GCCGTCTGAAGAACATTCCGCGGCACAAATCGCTGGTTCGTCTTGCTGCAGTGAACCAATCTTTGGGGAACGCCATACAC
CACTTCACGCTCAAGGCTGGTTT---------------------------------------------------------
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>SNPs
-SSSSSS-SS-SS-SSSSSSSSSSSSSSSSSSSSS-----------S---------------------------S-----
-------------------------S----S--S--------------S---S-----------S---------------
------------------------------S------S---------------SSS----S-------------------
---------S--------------------------SS----S-------------S----S------------------
-----SS-----------------------------------------------------------------------SS
SSS-SSSS------------------------------------------------------------------------
------------S------------------------------------------SSS----------------------
---------------S--------------------------------------------------------S-------
------------------------------------S-------------------------------------------
--------------------------------------------------------------------------S-----
---------S-------SS------SSSSSSS-------S----------------------------------------
------------------------------------------SSSSSSSSSSSSSSSSSSSSSSS-------S-------
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---------------------S----------------------------------------------------------
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-------------------------------------------------SSSSSSSSSSSSSSS----------------
----------------------S-----------------------------------S--S------------------
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----------------------------------------S---------------------------------------
-----------------------------------------------------------S--------------------
-------------------------------------------------------S--------------S---------
----------------------------------------------------------S---------------------
-----------------S--------------------------------------------------------------
-------------------------------------------------------------------------S------
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---------------------------------------------S----------------------------------
-------------------S------------------------------------------------------------
--------------------------S-----------------------------------------------------
------------------------------------------------------------S-------------------
--------------------S-----------------------------------------------------------
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---------------------------------S----------------------------------------------
-------------------S------------------------------------------------------------
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--------------------------------S-----------------------------------------------
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-------------------------------------------------------------------S------------
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>forward_928
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----------------------------TCGGTAGCCTGTACACCCTA--------------------------------
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>reverse_2314
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-------------------------------------------------------------------------TGGCAGA
GTGAAAGTGGCTT-------------------------------------------------------------------
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>forward_2056
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------------------------------------GATCGCGTTCAGCTCTGCAT------------------------
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>reverse_3508
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-------------------------------------------------------------------TCTGTCCAGCGCT
GACAAG--------------------------------------------------------------------------
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-------------------------------
