>input_sequence_43401
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------ATGGCGTCGGGATCAGCAGCTCTGGC
TGTCGTCGCCGTGGCCGTGGCGGCTGCGCTCCTTGCCCTGTGTGGCTCGACGGAGGCCCACGCGCAGTTCGGGGCGTACA
ACAAGACGTGCCCACAGGCGGAGGACATCGTGTTCAAGGAGATGACCGCCGTCCTCGCCAAGTCGCCCGGCCTCGCCGGA
TCCATGCTCAGGCTCTTCTCCGTCGACTGCTTCGTCGGAGTAAGTCGAGCTCAT---AACCCAGCTATCTATCTACAGTT
ATGAGCTAGATAGGCGA--------GTCAAGTTCACAACTGTGCCTT----------GCGCAGGGTTGTGAGGGGTCGAT
ACTTCTCGACTCGACGGCCAACAACACGGCAGAGAAGGACTCGCCGCTCAACAAGGGCCTCCGCGGCTACAACGTCATCG
ACTCCATCAAGGCGAAGCTCGAGGCGGCCTGCCCCGGCGTTGTCTCCTGCGCCGACGTCCTCGCCCTTGCTGCGCGTGAC
TCCGTGCGAATTGTACGTCGTCGTCTCAGCAAATAATTGTCTCCTTCGTATTCATCTTACAATGTTTTAAATAGCCCAAG
TTATAGCCCCGCTAAAGGGCCCGGGAGCCAAATCGAATTGCACTTTCAACGCTGAATTGAGAATGACGGCAATAGCCCGC
TATTTTGCGCTATAGCGCTAACTTTGAAGTCATTTAGCCTTCTGCATTGTTTTTTGTTCTTGTTTATCATATATATGACG
CTTGGTTGTTGAATTAGGACACCTAATTGGTGCTAGGGTATTGATGTGTGAATATGTTTATATGTCAAGAGATAGCATAT
GCAATATAATCCCTCCGTCCCATAATATTGGATTATTTTCAAGCTAACCTCTGTCTCATAATACAAGATCATTTTTCAAG
CTATGTTAGCTTCAAAAACGATCTTGTATTGTAGTTGGACGGAGGGAGTATCATATATGATGCCTGATTGTATACTTATT
TTTTTTCATGATTTAAGAAAACACTAAATGAG------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------GCTTATAGCTTCGATATAACTTTTCATAGCTTTTGGCCGCTAAATGGCATACTGTTATTTAA
AACAATGGTCTCATCTGTATCTGATGCCATGTGGCTCATGCCTCACCTCTACTAGACCAAAGGCCCCTACATCCCGGTCC
CGACGGGACGGGAGGACGGCAATAGATCGTCTGCCGCCGACGTCGCCCCCAACACCCCCAAGCCGGACGCCAGCATTACC
GACCTCATCACCTTCTTCGGGAAGTTCAACCTCACTGCCAAGGACCTTGCCGTCCTCTCCGGTGCACACACCACCGGCAA
GGCTCACTGCCCCGCCTTCTCCGCCCGCCTCTACAACTTCACCGCCAGCAACAAC---ATCTCAGACCCCACGCTCGATG
CCAACTACACGGCCACGCTCCGCGGCCAGTGTGCGGCCGGTGACCTCGCCACCCTCGTCGACCTCGACCCCAGCAGCGAC
ACGACGTTCGACCTTGGCTACTACAGGGGCGTCGCGGCGAGCAGGGGCCTCCTCTCCACCGACGGCGCGCTGCTCCTCAA
CGAGGACACCAGGGCCTACGTGACGCGCCAGGCCAACGCCACCGCGCCCGCCGAGTTCTTCGCCGACTTCGCTGCGTCCT
TCATCAACATGAGCAAGATCGGCGTGTTGTCGCACCATAAGGGCCAGATAAGGAGGCACTGCTCCGTTGTCAACCCTCTG
TCCGCCTCCTCCCAGGCGCCCGTCACCATGGGCGCGCACGCCGCTGTGCTACTTGCCAGCTCTTTCGTCTCCATCGTCGC
TCTGGCGCTTGTGCTCTAG-------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------
>chr4A_1_TraesCS4A01G379400
TCTCACTTCTTCTTCCATAAACTCTTGAGTCAGATCAACATTATCGTCATCTTTATGCTTCTCATCGTCACCTCACGTGT
TAGGATCCATGTGAAACTGGTTACCAGGGGCGGGGCCAAAGAGTTCCTTATAGAACTCGGTGGCATGTTCAATCAAATTG
TCAATACCCTCTATTCGACATCGCCGCATTGAGAGATCTTGATGTATGAGAGTCTTTAGTTCTATTTGGAGAAGAACTTG
TTGTATCCCACGTTTGATTAGAGTGAAAGAAGATATGTGTGGCTTGGGCTCGTGGTATTTACCCCACTTGACGGTTTTCC
ACATAAAAATACCGGTGCTCATCTCTGCTAATTTTGTGCTATTGTTTTGTGTAGTTTCGCTTGGCAAAAGACACCTTTGA
GTTGGATGTCATTGTGCAGCACCGTGTTGGAGAAACTTAATAAAAGCGTTAAATTTCTTCCTAAGTTTCGGTTGACAGAA
TGTACTCCATATATGCAAACACATATGTTTCCTTCTGTAACTAAGTAACAACGTGTGAGTTAGTGCATAGAGTTGGTGCT
AAAGTTACTTTGTTTCCGTTGCAGTATTTTCGGATCACCGTTAAGCGCGTGCTTACCATATGACTAGGCGTTCTCATTCG
TTCGGTCCGATAATATATAAAGCTGGACGATATGGGGGAGAGCGAAACTGGGAATATGTAAACTGAAATGGTGCTTTCAG
CCGCTACCAA-CGGAGTAGAACAACGTTATCTCCACCTCCAATAAATTGTAGCC---TATGTCAACTATCTAACCGTTGA
CATTCGTTATCCCATCCTGCTCGTGGCACAACGCAGTAGTACGTAGTACACA-----TGCAAGTACACAAAGCGCAAGCA
GTACTTGAAAGTCGAAACTGAAATGGATAGAGACGGAAG----CCATTTCAGAAGCCTAATATATATAGACAGGTGTGC-
GTGTGGTGTACTGCATTCCTTTTCAAGCTAATAACGGTCATAAGCTAGATAGAGATGGCGTCGGGATCAGCAGCTCTGGC
TGTCGTCGCCGTGGCCGTGGCGGCTGCGCTCCTTGCCCTGTGTGGCTCGACGGAGGCCCACGCGCAGTTCGGGGCGTACA
ACAAGACGTGCCCACAGGCGGAGGACATCGTGTTCAAGGAGATGACCGCCGTCCTCGCCAAGTCGCCCGGCCTCGCCGGA
TCCATGCTCAGGCTCTTCTCCGTCGACTGCTTCGTCGGAGTAAGTCGAGCTCAT---AACCCAGCTATCTATCTACAGTT
ATGAGCTAGATAGGCGA--------GTCAAGTTCACAACTGTGCCTT----------GCGCAGGGTTGTGAGGGGTCGAT
ACTTCTCGACTCGACGGCCAACAACACGGCAGAGAAGGACTCGCCGCTCAACAAGGGCCTCCGCGGCTACAACGTCATCG
ACTCCATCAAGGCGAAGCTCGAGGCGGCCTGCCCCGGCGTTGTCTCCTGCGCCGACGTCCTCGCCCTTGCTGCGCGTGAC
TCCGTGCGAATTGTACGTCGTCGTCTCAGCAAATAATTGTCTCCTTCGTATTCATCTTACAATGTTTTAAATAGCCCAAG
TTATAGCCCCGCTAAAGGGCCCGGGAGCCAAATCGAATTGCACTTTCAACGCTGAATTGAGAATGACGGCAATAGCCCGC
TATTTTGCGCTATAGCGCTAACTTTGAAGTCATTTAGCCTTCTGCATTGTTTTTTGTTCTTGTTTATCATATATATGACG
CTTGGTTGTTGAATTAGGACACCTAATTGGTGCTAGGGTATTGATGTGTGAATATGTTTATATGTCAAGAGATAGCATAT
GCAATATAATCCCTCCGTCCCATAATATTGGATTATTTTCAAGCTAACCTCTGTCTCATAATACAAGATCATTTTTCAAG
CTATGTTAGCTTCAAAAACGATCTTGTATTGTAGTTGGACGGAGGGAGTATCATATATGATGCCTGATTGTATACTTATT
TTTTTTCATGATTTAAGAAAACACTAAATGAG------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------GCTTATAGCTTCGATATAACTTTTCATAGCTTTTGGCCGCTAAATGGCATACTGTTATTTAA
AACAATGGTCTCATCTGTATCTGATGCCATGTGGCTCATGCCTCACCTCTACTAGACCAAAGGCCCCTACATCCCGGTCC
CGACGGGACGGGAGGACGGCAATAGATCGTCTGCCGCCGACGTCGCCCCCAACACCCCCAAGCCGGACGCCAGCATTACC
GACCTCATCACCTTCTTCGGGAAGTTCAACCTCACTGCCAAGGACCTTGCCGTCCTCTCCGGTGCACACACCACCGGCAA
GGCTCACTGCCCCGCCTTCTCCGCCCGCCTCTACAACTTCACCGCCAGCAACAAC---ATCTCAGACCCCACGCTCGATG
CCAACTACACGGCCACGCTCCGCGGCCAGTGTGCGGCCGGTGACCTCGCCACCCTCGTCGACCTCGACCCCAGCAGCGAC
ACGACGTTCGACCTTGGCTACTACAGGGGCGTCGCGGCGAGCAGGGGCCTCCTCTCCACCGACGGCGCGCTGCTCCTCAA
CGAGGACACCAGGGCCTACGTGACGCGCCAGGCCAACGCCACCGCGCCCGCCGAGTTCTTCGCCGACTTCGCTGCGTCCT
TCATCAACATGAGCAAGATCGGCGTGTTGTCGCACCATAAGGGCCAGATAAGGAGGCACTGCTCCGTTGTCAACCCTCTG
TCCGCCTCCTCCCAGGCGCCCGTCACCATGGGCGCGCACGCCGCTGTGCTACTTGCCAGCTCTTTCGTCTCCATCGTCGC
TCTGGCGCTTGTGCTCTAGCCAGCATGCAACTTGCATTCTGTGAAGTGTTTGGTTTGGGTTTTGATTTTATCTGTTGATT
GCTTATTTGTCTCGATTGATTTGCACTGGTAAGGATGGATGCTATCATGTCAAGCTGAGCTTGCTGTTCCCTGATTTATG
AATGTAAGTATATATTGCTGGTCGCAAGCTCTCCATGATGACCGTCATTATGGCACTTGTACCTGTTTTGAGTTTGATGG
GTGTTGGAATTTAAGTTTGAGTTTGAATGAAGTTTAACTAGTTTTCAATCAGTTTTAACAAAGAAAAGGGTCAATTCTTT
TTTTAAAGAAAAGGGTCATTTCTTATTGAAGCAGGCAAGACCTATAAGCATCAAAACCGTAAAACATATAGTCACATAGC
ATTGCAAACATCGTAAGGTCTAGATAGTCAAAATATTACCCGTTGTTAAGAAATATAAATGAAAATTGCATATCTATTAA
TTTGAATTTAAAGTCGGTTCTCTACGACCAACTTGGTCAAAGATCTTTATAATTTGTTGAGAACTCAACTTAGGTCTTCC
CACATCATGTGTTCTTAACCTGACACTAGTAGAGAAATGGTTAGCCACAACTTTAATTATTGTCGCACCCACTTTCAATC
CATGTCATCGCTATTTTTTTAAAATAATGATGGCATTGACATATTTGGTACCACTGGTAGGAAAACGACTTTACATGAGC
CCCACTAGTCCCGGTTCCAACGGCTAGGGGGCCGGGCTTCATTAGTCCCGGTTCGTGTTGAACCTTTAGTACCGGTTCGT
GACACGAACCAGGACTAAAGGGGTGGTGACAGGCTGGTGTCAGGCTAGGGCCCCACGAGCACATTTAGTAACGGTTCATG
TCACAAACTGGGACTAGAGGTTCACCTTTAGTCCCCGTTTGTATAACCAACCGGGACTAAAGATACTCCTATATAAACTC
TTCGTCCAGCTCGAACCTAAGCTCTATGTTTTCCCCTCCTCTCTGTTTTCTTCCCCTCT
>chr2A_704
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------TGAAATGGCGCTTTCAG
CTGCTAGAAAATGGAGTA-AACAACGTTATCTCCACTTG--ATAATCTGTAACTATATATGTCAACTAGATAGCCGTTGA
CATTCTCCTATCTCGCAGTACAGAGCAGTAC----GTAGTACGTAGTACACACTGCGTGCAAGTACAC-AAGCGCAAGGA
GTACTTGAAA-------TTGAAATGGGTCGAGACGTATTGACATTATTTCAGAAGCC---TATATACATATAGGTAGCGT
GTGTGGTGTACTGCATATATACTCAAGCTAA---CGATCATAAGCC----AGACATGGCGCCGAGGTCAGCAGCTCTAGC
GGTCGTCGCT------GTGGCGGCGACGCTCCTTGCCCTGTGTGGCTCGACGGAGGCCCACACGCAGCTCGGGGCGTACA
ACAAGACGTGCCCGCAGGCGGAGGACATCGTGTTCAAGGAGATGACCGCCGTCCTCGCCAAGTCGCCCGGCCTCGCCGGC
TCCCTGCTCAGGCTCTTCTCCGTCGACTGCTTGCTCGGAGTAAGTAAACCTCACACTATAAACCC---------------
-------AGCTAGGCAA--------GTCAAGTTCACAATGGTGAACGAATTCACTGCGCGCAGGGGTGCGAGGGGTCGAT
TCTTCTCGACTCCACGGCCAACAACACGGCGGAGAAGGACTCGCCGCTCAACAAGGGTCTCCGCGGCTACGACGTCGTCG
ACTCCATCAAGGCTAAGCTCGAGGCCGCCTGCCCCGGCGTCGTCTCCTGCGCCGACGTCCTCGCCCTCGCCGCGCGCGAC
TCCGTGCGGATCGTACGTCGTCTCACCCACCTAC----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----TTCCTTCAGTATCGGTTGCATCATCGACCTTGCATTGCATTGATCTTAA--------------------------
----------TCATCTGTATCTG----------------------------CTAGACCAAGGGGCCGTACATCCCGATGC
CGACGGGGCGGCAGGACGGGAACAGGTCGTCCGCCGGCGACGTCGCCCCCAACACCCCCAAGCCGGGCGCCAACATCACC
GACCTCATCGCGCTCTTCGCCAGGTTCAACCTCACCGCCAAGGACCTCGCCGTGCTCTCCGGCGCGCACACCATCGGCAA
GGCTCACTGCTCCGCCTTCTCCCCTCGCCTCTACAACTTCACCGCCAACAGCAGC---GCCTCCGACCCCACGCTTGACG
CCAACTACACGGCGACGCTCCGCGGGCAGTGCAAGGCCGGCGACCTCGCTACCCTGGTCGACCTCGACCCTGGCAGCGGC
GCCACGTTCGACCTCGGGTACTACGGGGACGTCGCGGCGAGCAGGGGCCTCCTCTCCACCGACGCCGCGCTGCTCCTCGA
CGGGGACACCAGGGCCTATGTGATGCGCCAGGCCAATGCCACCGCGCCCGACGAGTTCTTCGTCGATTTCGCCGCGTCCT
TCGTCAACATGAGCAAGATCGGCGTGCTGTCGCACCACAAGGGCGAGATAAGGAGGCAGTGCTCCGCCGTCAACCCGCCG
TCGGCCTCCTCCTTGGCGCCTGCCGCCATGAGCGCGCAC---GCCGTGCTACTCGCGAGCTGTTTCGTCTCCATCGTTAC
TCTGGCGCTTGTGCTCTAGCCAGCA-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------
>chr2B_704
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------TGAAATGGCGCTTTCAG
CTGCTAGAAA-TGGAGTA-AAGAACGTTATCTCCACTTATAATAATCTGTAAGTATATATGTCAACTAGATAGCCGTTGA
CATTCTCCTATCTCGCAGTACAGAGCAGTAC----GTAGTACGTAGTACACACTGCGTGCAAGTACAC-AAGCGCAAGCA
GTACTTGAAAT----AATTGAAATGGGTGGAGAGGGAGG----TTATTTCAGAAGCGTA-TATATACATACAGGTAGCGT
GTGTGGTGTACTGCATATA--CTCAAGGTAA---CGATCATAAGCTC----GACATGGCGCCGAGGTCAGCAGCTCTAGC
GGTCGTCGTG------GTGGCGGCTACGCTCCTTGCCCTGTGTGGCTCGACGGAGGCCCACACGCAGCTCGGGGCGTACA
ACAAGACGTGTCCCCAGGCGGAGGACATCGTGTTCAAGGAGATGACCGCCGTCCTCGCCAAGTCGCCCGGCCTCGCCGGC
TCCCTGCTCAGGCTCTTCTCCGTCGACTGCTTGCTCGGAGTAAGTAAAGT--------------------CTATTGA---
------TAGCTAGGCAGGTCAATGGGTCAAATTCACGATAGTGAGTGAATTCACTGCGCGCAGGGCTGCGAGGGGTCGAT
TCTTCTCGACTCCACGGCCAACAACACGGCGGAGAAGGACTCGCCGCTCAACAAGGACCTCCGCGGCTACGACGTCGTCG
ACTCCATCAAGGCAAAGCTCGAGGCGGCCTGCCCCGGCATCGTCTCCTGCGCCGACGTCCTCGCCCTCGCCGCTCGCGAC
TCCGTGCGGATCGTACGTCGTCTCACTCACCTAC----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----TTCCTTCAGTATCGGTTGCATCATCGACCTTGCATTGCATTGATCTT----------------------------
------------CTCTGTATCTG----------------------------CCAGACCAAGGGGCCGTACATCCCGATGC
CAACGGGGCGGCAGGACGGAAAGAGGTCGTCTGCCGCCGACGTCGCCCCCAACACCCCCAAGCCGGGCGCCAACATCACC
GACCTCATCGCCCTCTTTGCCAGGTTCAACCTCACCGCTAAGGACCTCGCCGTGCTCTCCGGCGCGCACACCATCGGCAA
GGCTCACTGCTCCGCCTTCTCCCCTCGCCTCTACAACTTCACCGCCAACAACAGC---GCCTCCGACCCCACGCTTGACG
CCAACTACACGGCGACGCTCCGCGGCCAGTGCAGGGCCGGCGACCTCGCTACCCTGGTCCACCTCAACCCTGGCAGCGGC
ACCAAGTTCGACCTCGGGTACTACAGGGACGTCGCGGCGAGCAGGGGCCTCCTCTCCACCGACGCCGCGCTGCTCCTCGA
CGGAGACACCAGGGCCTACGTGATGCGCCAGGCCAATGCCACCGCGCCCGACGAGTTCTTCGCCGATTTCGCCGCGTCCT
TCGTCAACATGAGCAAGATAGGCGTGCTGACGCACCACAAGGGCGAGGTAAGGAGGCAGTGCTCCGCTGTCAACCCGCCG
TCAGCCTCCTCTTTGGCGCCTGTCACCATGAGTGCGCAT---GCCGTGCTACTCGCGAGCTGTTTCGTCTCCATCGTTAC
CATGGCGCTTGTTCTCTAGCCAGCA-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------------------------------------------------------
>chr2D_978
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------------------------------TAACCATCATAACCAAGGTAGACATGGCGCCGAGGTCAGCAGCTGTAGC
GGTCGTCGCG------GTGGCGGCGACGCTCCTTGCCCTGTGTGGCTCGACGGAGGCCCACGCGCAGCTCGGGGCGTACA
ACAAGACGTGCCCGCAGGCGGAGGACATCGTGTTCAAGGAGATGACCGCCGTCCTCGCCAAGTCGCCCGGCCTCGCCGGC
TCCCTGCTCAGGCTCTTCTCCGTCGACTGCTTGCTCGGAGTAAGTAAAGCTCGCACAAACCCAGCTGTTGCTATTGA---
------TAGCTAGGCAA--------GTCGAGCTCACAATAGTGACTGGATTCACTGCGCGCAGGGCTGCGAGGGGTCGAT
TCTTCTCGACTCCACGGCCAACAACACGGCGGAGAAGGACTCGCCGCTCAACAAGGGCCTCCGCGGCTACGACGTCGTCG
ACTCCATCAAGGCAAAGCTCGAGGCGGCCTGCCCCGGCGTCGTCTCCTGCGCCGACGTGCTCGCCCTCGCCGCGCGCGAC
TCCGTGCGGATCGTACGTCGTCTCACCCACCTACTTCCTCGAAAATATAAAATAGAACAGCCGCACCTCGGCCCTCTCTA
TC----------------------------------------------------------------------TAGCCATC
CATTCTGCGCATCGCGATTCGTGCAAATACA-------------------TTTTTCTTTTTTTCTTTCACATAAAACTTG
AAGTTCAAACCTTTGCAGCGTAGCAAAGTTTTCTATCTAGAATCTAGGATAAATCTT-----------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------TCAGT
TTTTTTTGTCAAATATAAATATACAAAATGTTTGACAAAAAATTCTGAAAGATTTATCCTAGATTCTAGATGGAAAGCTT
TGCCACGCTGCAAAGGTTTGAACTTCAAGACATCTTTTATGTGAGAGAAACAAAAAAAAAATTTCATATGAAAAGTTAGT
TGTGTTGCACAGATCTTAAAGCAATATTGGACAGTCAGAATACCAGAGCTGGGGTGCAGCTGTTCTAAAAATCCACGTCC
CCTACTTCCTTCAGTATCGGTTGCATCATCGACCTTGCATTGCATTGATCT-----------------------------
-----TGATCTTCTCTGTATCTG----------------------------CTAGAGCAAGGGACCGTACATCCCGATGC
CGACGGGGCGGCAGGACGGGAACAGGTCGTCCGCCGCCGACGTCGCCCCCAACACCCCCAAGCCGGGCGCCAACGTCACC
GACCTCATCGCCCTCTTCGCCAGGTTCAACCTCACCGCCAAGGACCTCGCCGTGCTCTCCGGCGCGCACACCATCGGCAA
GGCTCACTGCTCCGCCTTCTCCCCTCGCCTCTACAACTTCACCACCACCAACAGCAACGCCTCCGACCCCACGCTTGACG
CCAACTACACGGGGACGCTCCGCGGCCAGTGCAGGGCCGGCGACCTCGCTACCCTGGTCGACCTCGACCCTGGCAGCGGC
ACCACGTTCGACCTCGGGTACTACAGGGACGTCGCCGCGAGCAGGGGGCTCCTCTCCACCGACGCCGCGCTGCTCCTCGA
CGGAGACACCAGGGCCTACGTGATGCGCCAGGCGAATGCCACCGCGCCCGACGAGTTCTTCGCCGATTTCGCCGCGTCCT
TCGTCAACATGAGCAAGATCGGCGTGCTGACGCACCACAAGGGCGAGGTAAGGAGGCAGTGCTCTGCCGTCAACCCGCCG
TCGGCCTCCTCCTTGGCGCCTGTCACCATGAGTGCGCAC---GCCGTGCTACTCGCGAGCTGTTTCATCTCCATCGTTAC
CATGGCGCTTGTGCTCTAGCTAGCA-------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------S--------
-S----SS---S------S-----------------S-SS-----SS----S-S--------------SS--S-------
-----SSSSSS-SSS-SSSSSS-S-SSSS-SSSSS---------------------------------S-----------
----------SSSSS--S--------S-S--------S-----SS--------------S------S-S------SSSS-
----------------SSS-SS--------------S-----------S----S------S--S-S-----------S--
S--------SSSSSSS---------S-----------------------------------------S------------
-------------S-----------------------------------------------------------------S
---S----------------------------SS-----------SS------S------------S-SSS-S-SS-SSS
SSSSSS---S-----S----------------------SS---S--S------------------S--S-----------
S-----------S-----------------S---------------------------------------S-----S---
-------------S--------------------------S--------------------------S--S-----S---
--------S--S----------SSSS-SS-SS-SSSSSSSSSSSS-SSS-SSS-SSSS-SSSSSSSS-SSSSSSS-SSSS
-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----SS-
S---S-----SSSSSSSS-SSSSSSS-SSSSSSSSSSSSSSSSSSSSSSS-----S--S--S-S-S---S---S-SSSS-
SSSSSSSSSSSSS-SSS-SSSSSS--SSSS-S---SSSSSSSSS-SS-SS--SSSS-SSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-S-S-
------SS-S-SS--SS--S-S--S-----SS------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------S--SS-S-S----SS-SS-S--S---S-S-S--SSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSS--S---------------SSSSSSSSSSSSSSSSSSSSSSSSSSSS---------S--S--S---------S-S-
-------S---S-------S--S--S----------------------------------------S-----S---S---
---------S--S------SS-S------------S-----------S-----S--------S--S-------S------
----------S-----------S-S----------------------S-----S----SS---S-----------S--S-
-------------S-----------------SSS------S--------S-----S--------------SS------S-
--S-----------S--S----------S-----------------------------------S-------------S-
--S--------------------S------------S-------------S---------------S-----S-------
--S-----------------------S----------S------S-------------S-------S---------S-S-
--S---------SS------S---------S--------SSS--S--------S--S----S---------------SS-
-------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_197
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------ACATCGCCGCATTGAGAGAT-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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>reverse_1233
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------CGTCGGAGTAAGTCGAGCTC----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------------------------------------------------------
>forward_1026
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------AGATAGAGATGGCGTCGGGA--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------
>reverse_3175
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------------CTGAGCTTGCTGTTCCCTGA------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------------------
