>input_sequence_43393
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-----------------------------ATGTTGCCATCACACGCCATCCGCTGGAGCATGGATGCGGGCACTCTGAAT
GGCAGTCCAGATGCAGAGGAACTGACTCCCACGAGTTTAAAAAATGGGCTTCTTCAGGTCAGACATCATGTTTCAGAATC
TCTGGGCTCTTATAT----CTTTGGTTGCCCCGCGAATTATTGCACGCTTCTGCCAGTTCAATATTGGAGCAGGGTCGGG
GTGGGGGCAGT---AGTTGCCGCGCACAAAAACTAATGATCCGAAAGATGCTCTATTTCTTAATTATATGC--TGAATGT
GCACAGTTCGTGCGTGATCACAAACATTATTCTGTGGTG-CTCCAGAATTAGTTACTCTTCGCGACGTGGATGGTTTAGT
ACACCTGCTGTTGGGTGGGCAACATAGGCTGTGGCCGGGGTAGATATATGATGCACAAACCTTGTCTTAAAGGTTCTTTT
GAACTCTGTCTCCGATTTCAGCGCCTTACATTGCTTACCTTAACCCTTCCTTGCTCGGCCTGGAACGGTCGACAGGACAG
GTTCAGTGTTTGGGCCATAGTTTTTGTTGGCCGAAACAAGAGACAGT-----GCACCTAGCAAAGTTGCCCGGCTCTTTG
AGATGTATCCGAATTAGGCAACCAACTAGCGCGATATGGA---ATCATGAGAGTGAAGCAAGCATGCATGCCCATTGTCT
AGAGATCAGCCTACCGAATCAGTATAC-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------TAGTCAGGATCTGGATCTTGTTTAGGTTTGAGCATAAGAAAACCAAGCGATAAC
CGGTGAGTCATCAGGAACGGAGCGGATGAGATCGAGCGAGGTTGTTTAGTTAGCG-CCCTAATCCTCCTAATCACTCACA
CCTGCGTTTGACTTGCCTGATGCTTGGCATTTTTAATCAGATGAGGGTGCTGATCATCATCATCATCATCTGCCCTGGCC
CTGGGGTCACAGTGCTCGGCTCAATTGCGGCATGTGCAACATGTACTAGTATAAT-CTGGGGACCC-GGGAATCGAATTA
CAAAACTTGGG----GATTATTGATTGGTTTGGATAGTATTCTGTTCTGCTTCGCGTAGGCCAGCGCTGCGCCACCGGCT
CTCCGGATTTGGTTAGATCTCATCCCTTTGTTTTTTCTTGCTGTACTTTGTACTTTGCATTGCCTCCTTTTCTTGGGGTT
CTATTCTACTCCGTG----GGACGGCCCCTCGCTAACCGCCCC---TGTATATATAAAACCGCTGCTTCCTGTTGCCACC
TTGCCCAGC----TAAGCCACTTACTTGTCAACCAAATCAACAGGCATCACCTT---CATCCATCCCCTTCTGCTGCCTC
TGCCCGATGTCGACGACGGTGCAGGAGCCGCCGCACGTCCTGGCCGTGGACGACAGCCTTGTCGACCGCGTCGTCATCTC
CAGGCTCCTCCGCAGCTCCAAGTACAGAGGTA-----CCACCTCATCCCATTCCATGACTGAATCTGAACGGAGAAGAAA
TGAGCCTTGAATGAACT----------GAACTGAAACTTCTTCCTAATTTGTGCAGTGACGACGGTGGACAGCGGGAAGA
AGGCGCTGGAGGTGCTGAGCCTGGGCCACGAGAGCGTGCAGCTGATCATCACGGACTACTGCATGCCGGAGATGACCGGC
TACGACCTGCTCAAGCGGGTCAAGGAGTCGGCGGAGCTGCGCGGCATCCCGGTGGTGATCATGTCGTCGGAGAACTCCCC
CACCAGGATCCGCCGGTGCCTCGACGAGGGCGCGGAGGAGTTCCTCATCAAGCCCGTGCGCCCCTCGGACGTCTCCCGCC
TCTGCAGCCGTGCCATCGCCGCCATGCCCATGCGGTAG------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------
>chr6A_1_TraesCS6A01G416400
TACATTTGGTAACTCAAAATTGTTGCATCTCATGTTACAAGATGTGTGATACT---------------------------
--------------------------------------------------------------------ATCTTGTTTCTG
ATAAGATC------TAGTAAACTATAGTTCGGTTCAAACTAGTTTGTCTACTTGTCATATATATGAAATTTGGGTGTATT
TCTGTGATTTGTGTGATTGATAGGATATCCTGAGAACTGTCAGCCTGTCACCACTCGCTGTAGATGAACCGTGTTTAATG
AGGCTTGTCTGATTTGTCAGTACTTGTCTGATAC----------------------------------------------
-------------------------------------AATGCACTTTGATTGATTAACTCTCAGTTGTGCATCATTGCGT
TCATGCCACCAGCTGTCAATGAACTGTTACAATCTCGTGGTTTTTGGTCGGCGGATCATGGTAGATGCTTCAGATCACAG
TGACATGGTTGACTTGCATAGAGTATCGATCCCAAACTTTAATTTTTTTTGTC---------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------AATCTCACGTAGTGC
TGTGGTTAACTGTATGTCAACCCATTAAATCTTTTGGATGGTAATGCTTGATGTGAACAGCCTGAAATCAGGGACCTCAT
GTGCTCCATGATGCCATCTGTCTGATGAAAGATGTGTCTTGTAATGCAGGCAGTGTAGTCTGAGTTTGTATATTTTTCTA
ATGCAAACCCACAATAGGTGCCCT---------------------------------CGGAGTTGAAGGACTCTGATAGT
AAGCAATGTGCCACAAACTCGGTATATTGCATCAGTTTTCCTGTAGATTATATTTTTCAGGTCCTAAATTTGTACCATCT
TCATTTGAGTGCATGTACCACATCACATGGTTGACATTTAGCCTTGTAGTTCTTATGTTTACCAGAAGCAACAGCTGAAT
TGTGTTTCTCTTGAGTTGACCTTATTGCTTCTGTTCTTTTGATGTTTACGCAGGAGCAGCGGCTCGTGCATGGGCAGCTA
ACACCTGTACGCTTCTGAATATGAGCCAGTAAAATACCCCGGAAAGAAATAAAAGTTGTGCAGCTCCCGAGATCGATGAG
CGGTACCAATCCCCCTTCCGCGACCAGCCATGTTGCCATCACACGCCATCCGCTGGAGCATGGATGCGGGCACTCTGAAT
GGCAGTCCAGATGCAGAGGAACTGACTCCCACGAGTTTAAAAAATGGGCTTCTTCAGGTCAGACATCATGTTTCAGAATC
TCTGGGCTCTTATAT----CTTTGGTTGCCCCGCGAATTATTGCACGCTTCTGCCAGTTCAATATTGGAGCAGGGTCGGG
GTGGGGGCAGT---AGTTGCCGCGCACAAAAACTAATGATCCGAAAGATGCTCTATTTCTTAATTATATGC--TGAATGT
GCACAGTTCGTGCGTGATCACAAACATTATTCTGTGGTG-CTCCAGAATTAGTTACTCTTCGCGACGTGGATGGTTTAGT
ACACCTGCTGTTGGGTGGGCAACATAGGCTGTGGCCGGGGTAGATATATGATGCACAAACCTTGTCTTAAAGGTTCTTTT
GAACTCTGTCTCCGATTTCAGCGCCTTACATTGCTTACCTTAACCCTTCCTTGCTCGGCCTGGAACGGTCGACAGGACAG
GTTCAGTGTTTGGGCCATAGTTTTTGTTGGCCGAAACAAGAGACAGT-----GCACCTAGCAAAGTTGCCCGGCTCTTTG
AGATGTATCCGAATTAGGCAACCAACTAGCGCGATATGGA---ATCATGAGAGTGAAGCAAGCATGCATGCCCATTGTCT
AGAGATCAGCCTACCGAATCAGTATAC-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------TAGTCAGGATCTGGATCTTGTTTAGGTTTGAGCATAAGAAAACCAAGCGATAAC
CGGTGAGTCATCAGGAACGGAGCGGATGAGATCGAGCGAGGTTGTTTAGTTAGCG-CCCTAATCCTCCTAATCACTCACA
CCTGCGTTTGACTTGCCTGATGCTTGGCATTTTTAATCAGATGAGGGTGCTGATCATCATCATCATCATCTGCCCTGGCC
CTGGGGTCACAGTGCTCGGCTCAATTGCGGCATGTGCAACATGTACTAGTATAAT-CTGGGGACCC-GGGAATCGAATTA
CAAAACTTGGG----GATTATTGATTGGTTTGGATAGTATTCTGTTCTGCTTCGCGTAGGCCAGCGCTGCGCCACCGGCT
CTCCGGATTTGGTTAGATCTCATCCCTTTGTTTTTTCTTGCTGTACTTTGTACTTTGCATTGCCTCCTTTTCTTGGGGTT
CTATTCTACTCCGTG----GGACGGCCCCTCGCTAACCGCCCC---TGTATATATAAAACCGCTGCTTCCTGTTGCCACC
TTGCCCAGC----TAAGCCACTTACTTGTCAACCAAATCAACAGGCATCACCTT---CATCCATCCCCTTCTGCTGCCTC
TGCCCGATGTCGACGACGGTGCAGGAGCCGCCGCACGTCCTGGCCGTGGACGACAGCCTTGTCGACCGCGTCGTCATCTC
CAGGCTCCTCCGCAGCTCCAAGTACAGAGGTA-----CCACCTCATCCCATTCCATGACTGAATCTGAACGGAGAAGAAA
TGAGCCTTGAATGAACT----------GAACTGAAACTTCTTCCTAATTTGTGCAGTGACGACGGTGGACAGCGGGAAGA
AGGCGCTGGAGGTGCTGAGCCTGGGCCACGAGAGCGTGCAGCTGATCATCACGGACTACTGCATGCCGGAGATGACCGGC
TACGACCTGCTCAAGCGGGTCAAGGAGTCGGCGGAGCTGCGCGGCATCCCGGTGGTGATCATGTCGTCGGAGAACTCCCC
CACCAGGATCCGCCGGTGCCTCGACGAGGGCGCGGAGGAGTTCCTCATCAAGCCCGTGCGCCCCTCGGACGTCTCCCGCC
TCTGCAGCCGTGCCATCGCCGCCATGCCCATGCGGTAGCAACGGTCGGTCACGGCGCCGGCGTGTGCCGTGCTGCTGATC
GGTGCTAGTCTGCTAGCTTGCTAATCCAGTCCT-CCTCCCCCC----TCTGTTGAGTTCTCACTGACGAGATAATCCCAT
GTACATGCGTGATGCGTGTGCTGG--------TTGCATGGTGAAATCAAAACTGAATGAATTCCATGGCAATCCACGGAA
TGTATGTATTCCA------ACTTACCAAGGTATGAAATCCACAACTAATGGTGAAACAGTAAAGCGTTAGGCCAACAATG
GAAAAGGCTCCATTATTATTATTATTATCTAACAAAAACCATTAAAAAAATAAATCTGGTTGAGCAATTGACGATTTATG
AAACTTTAATCTTGTTTCAAGTAAAAAAGAAATCACACATGGCATTTCGATATTATATTATCCTCTGCAACAACCTTGTG
TGGGTGGGCATCGGAAATCCGTTGGTGCTCCCGGGAGCGCGCGCTCATGCATGCGATTTTTTTTTCAAAGTGTGAAAAAA
TTCCAAACAAAAATTTGGCGTATACATCTCGACATTATATGTCTGCATATCAAGTTTCGGAGAAAACCGATATTTTTTGT
GGCTTGTGTAAAAAAGACAAAAGGATGTCTTGTCTTGTGAAAAGCATTTTTAAAACCAGATTTTGTCTTCTTCACAGGTG
AGACGCGACACATAAGTTGTCGGTTTTTCACGAAACGACTTTTGTGAGCATGTACAATATCGAGATATACGCGCCAAGTT
TTTGTTTGGAATTTTTTGACATTTCAAAACATGTTTAAAACACATTTAAAAACCAGGAGCTCGCGCTCTCATGTGTCAGC
ACACCACTCTCGAAAACTAGTTGTATTCAATCGAGGAACTAAGTAAAGGTTGGTAGTTAGGAACAATATATGACTGTATC
CCAAGCCTAACCCAACAAGGGATGAAGCCCTAGTACGTTCGATACCCCGCCTATGTCGACAGCGAGGCCTATGGTGACTT
TGTCAATCCTGAGGGTT
>chr6B_1
TACATTTGGTAACTCAAAATTGTTGCATCTCATGTTACAAGATGTGTGATACT---------------------------
--------------------------------------------------------------------ATTTTGATTCTG
ATAAGGTCCAGTACTAGTAAACTATAGTTCGGTTCAAACTAGTTTGTCTACTTGTCATATATATGAAATTTGGGTGTATT
TCTGTGATTTGTGTGATTGATAGGATATCCTGAGAACTGTCAGTCTGTCACCACTCAACCTAGATGAACCATGTTTAATG
AGGCTTGTCTGGTTTGTCAGTACTTGTCTGATAC----------------------------------------------
-------------------------------------AATGCACTTTGATTGATTAACTCTCAGTTGTGCATCATTGCGT
TCATGCCGCCAGCTGTCAGTGAACTGTTACAATCTCGTAGTTTTTGGTCGGCGGATCATGGTAGATGCTTCAGATCACAG
TGACATGGTTGACTTGCATAGAGTATCGATCCCAAACTTTAAATTTTTTTTGTCAGTGGTAAAGCTGCTGCCTTGTGACC
ATGAGGTCACGGGTTCAAGTCCTGGAAACAGCCTCTTGCAGAAATGTAGGGAAAGGCTGCGTACAATAGACCCAAAGTGG
TCGGACCCTTCCCCAGACCCAGCGCAAGCGGGAGCTACATGCACTGGGGCTGCCCTTTTTTTTTTAATCTCACGTAGTGC
TGTGGTTAACTGTATGTCAACCCATTAAATCTTTTGGATGATAATGCTTGATGTGAACAGCCTGAAATCAGGGGCCTCAT
GTGCTCCATGATGCCATCTGTCTGATGAAAGATGTGTCTTGTCATGCAGGCAGTGTAGTCTGAGTTCGTATATTTTTCTA
ATGCAAACCCACAATAGGTGCCTTCGGAGTTGAAGGACTCCAATAGTAAGCAATGTGCGGAGTTGAAGGACTCTGATAGT
AAGCAATGTGCCACAAACTCGGTATATTGCATCAGTTTTCCTGTAGATTATATTTTTCAGGTCCTAAATCTGTACCATCT
TCATTTGAGTGCATGTACCACATCACATGATTGACATTTAGCCTTGTAGTTCTTACGTTTACCAGAAGCAACAGCTGAAT
TGCGTTTCTCTCGAGTTGACCTAATTGCTTCTGTTCTTTTGATGTTTACGCAGGAGCAGCGGCTCGTGCATGGACAGCTA
ACGCCTGTACGCTTCTGAATATGAGCCAGTAAAATACCCCGGAAAGAAATAAAAGTTGTGCAGCTCCCAAGATCGATGAG
CAGTACCAATCCCCCTTCCGCGACCAGCCATGTTGCCATCGCACGCCATCCGCTGGAGCATGGATGCGGGCTCTCTGAAT
GGCAGTCCAGATGCAGAGGAACCGACTCC-ATGAGTTTAAAAAAGGGGCTTCTTCAGGTCAGACATCATGTTTCAGAATC
TCTGGGCTCTTATATATATCTTTGGTTGCCCCGCGAATTATTGCACGCTTCTGCCAGTTCAATATTAGGGCAGGGTCAGG
GTGGGGGGAGTAGTAGTTGCCGCGCACAAATACTAATGATCCGAAAGATGCTCTGTTTCTTAATTATATGC--TGAATGT
GCACAGTTCGTGCGTGATCAAAAGCATTATTCTGTAGCGCCTCCAGAATTAGCTACTCTTCGCGACGTGGATGGTTTAGT
GCACCTGCTGTTGGGTGGGCAACATAGGCTGTGGTCGGGGTAGATAC-----------ACCTTCTCTTCAATGTTATTTT
GAACTCGG-CTCCAATTTCAGCGCCTTACATTGCATACCTTAACCCTTCCTTGCTCGGCCTGAAACTGTCGACAG-----
GTTCAGTGTTCGGGCCATAGTTTTTGTTGGCCGAAACAAGAGACAGTGCACCGCACCTAGCAAAGTTGCCCGGCTCCTTG
AGATGTATCCGAATTAGGCAACCAACTAGCACGATATGAAATCATCATGAGAGTGAAACAAGCATGCATGCCCATTGTCT
AGAGATCAGCCTACCAAATCAGTATAC-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------TAGTCAGGATCTGGATCTCGTTTAGGTTTGAGCATAACAAAACCAAACGATAAC
CGGTGAGTCATCAGGAACGGAGCGGATGAGATCGAGCGGGGTTGTTTAATTAGCCCCCCTAATCCTCCTAATCACTCACA
CCTGCGTTTGACTTGCCTGATGCTCAGCATTTTTAATCAGATGAGGGTGCTGATCATCATCATCATCATCTGCCCTGGCC
CTGGGGTCACAGCGCTCGGCCCAATTGCGGCATGTGCAACATGGACTAGTATAAT-CTGGGGACCCGGGGAACCGAATTA
CAAAACTTGGGGATTGATTATTGATTGGTTTGGATAGTATTCTG-----CTTTGCGTAGGCCAGCGCGGCGCCACCGGCT
CTCCAGATTTGGTTAGATCTCATCCATTTC-TTTTTCTTGCTGTATTTTGTACTTTGC-----CTC--TTTTTTTGGGTT
TTATTCTACTCCGTG----GGACGGCCC-TCGCTAACCACCCTGTATGTATATATAAAACCGCTGCTTCCGGTTGCCACC
TTGCCCAGC----TAAGCCACTTACTTGTCAACCAAATCAGCAGGCATCAGCTTCTCCATCCATCCCCTTCTGCCGCCGC
TGCCCGATGTCGACGACGGCCCAGGAGCCGCCGCACGTCCTGGCGGTGGACGACAGCCTCGTCGACCGCGTTGTCATCTC
CAGGCTCCTCCGCAGCTCCAAGTACAGAGGTACTGTTCCATCCCATCCCATCCCATGACTGAATCTGAACTGAGAGC---
TGAGCCTTGGATGAACTGAACTCAACTGAACTGAAACTTCTTCTTAATTTGTGCAGTGACGACGGTGGACAGCGGGAAGA
AGGCGCTGGAGGTGCTGAGCCTGGGCCGCGAGAGCGTGCAGCTGATCATCACGGACTACTGCATGCCGGAGATGACCGGC
TACGACCTGCTCAAGCGGGTCAAGGAGTCGGCGGAGCTGCGCGGCATCCCGGTGGTGATCATGTCGTCGGAGAACTCCCC
CGCCAGGATCCGCCGGTGCCTCGACGAGGGCGCGGAGGAGTTCCTCATCAAGCCCGTGCGCCCCTCCGACGTCTCCCGCC
TCTGCACCCGGGCCATCGCCGCCATGCCCATGCGGTAGCAACGGCCGGTCG------------GTGCCGTGCTGCTGATC
GGTGCTAGTCTGCTAGCTTGCTAATCCAATCCTCCCTCCCTCCCTCCTCTGTTGAGTTCTCACTGACGAGATAATCCCAT
GTACATGCGTCTGCTGCAGGGTTGCATTCCAATTCCATGGTGAAATCGAAACTGAATGAATTCCATGGCAACCCACGGAA
TGTATGTATGTATTCCTTTACTTGCCAATGTATGAAATCCACCAATAACTGCGAAACAGTAAAGCGGCAGGCCAGCAAT-
--------------------------------------------------------------------------------
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-----------------
>chr6D_1
TACATTTGGTAACTCAAAATTGTTGCATCTCATGTTACAAGATGTGTGATACTCCCTCCGTCCTAAAATAAGTGACTCAA
CTTTGTACTAACTTTAATACATAGTTAGTACAAAGTTGAGTCACTTATTTTTGGACGGAGGGAGTACTATTTTGATTCTG
ATAAGGTCCAGTACTAGTAAACTATAGTTCGGTCCAAACTAGTTTGTCTACTTGTCATATATATGAAATTTGGGTGTATT
TCTGTGATTTGTGTGATTGATAGGATATCCTGAGAACTGTCAGTCTGTCACCACTCACCCTAGATGAACCATGTTTAATG
AGGCTTGTCTGGTTTGTCAGTACTTGTCTGATACTCCCTCTGTAAACTAATATAAGAGTGTTTAGATTACTAAAGTAGTG
ATCTAAACGCTCTTATATTAGTTTACGGAGGGAGTACAATGCACTCTGATTGATTAACTCTCAGTTGTGCATCATTGCGT
TCATGCCACCAGCTGTCAATGAACTGTTACAATCTCGTGGTTTTCGGTCGGCGGATCATGGTAGATGCTTCAGATCACAG
TGACATGGTTGACTTGCATAGAGTATCGATCCCAAACTTTAATTTTTTTTGTC---------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------AATCTTACGTAGTGC
TGTGGTTAACTGTATGTCAACCCATTAAATCTTTTGGATGATAATGCTTGATGTGAACAGCCTGAAATCAGGGACCTCAT
GTGCTCCATGATGCCATCTGTCTGATGAAAGATGTGCCTTGTCATGCAGGCAGTGTAGTCTGAGTTCGTATATTTTTCGA
AAGCAAACCCACAATAGGTGCCCT---------------------------------CGGAGTTGAAGGACTCTGATAGT
AAGCAATGTGCCACGAACTCGGTATATTGCATCAGTTTTCCTGTAGATTATATTTTTCAGGTCCTAAATTTGTACCATCT
TCATTTGAGTGCATGTACCACATCACATGGTTGACATTTAGCCTTGTAGTTCTTATGTTTACCAGAAGCAACAGCTGAAT
TGCGTTTCTCTTGAGTTTACCTTATTGCTTCTGTTCTTTTGATGTTTACGCAGGAGCAGCGGCTCGTGCATGGACAGCTA
ACACCTGTACGCTTCTGAATATGAGCCAGTAAAATACCCCGGAAAGAAATAAAAGTTGTGCAGCTCCCAAGATCAATGAG
CAGTACCAATCCCCCTTCCGCGACCAGCCATGTTGCCCTCACACGCCATCCGCTGGAGCATGGATGCGGGCTCTCTGAAT
GGCGGTCCAGATGCAGAGGAACTGACTCC-ACGAGTTTAAAAAACGGGCTTCTTCAGGTCAGACATCATGTTTCAGAATC
TCTGGGCTCT----TATATCTTTGGTTGCCTCGCGAATTATTGCACGCTTCTGCCAGTTCAATATTGGAGCAGGGTCAGG
GCGGGGGCAGT---AGTTGCCGCGCACAAAAACTAATGATCCGAAAGATGCTCTATTTCTTAATTATATATGATGAATGT
GCACAGTTCGTGCGTGATCAAAAGCATTATTCTGTGGTG-CTCCAGAATTAGTTACTCTTCGTGACGTGGATGGTTTAGT
ACACCTGCTGTTGGGTGGGCAACATAGGCTGCGGTCGGGGTAGATAC-----------ACCTTCTCTTAAATGTTATTTT
GAACTCGG-CTCCAATTTCAGCGCCTTACATTGCATACCTTAACCCTTCCTTGCTCGGCCTGAAACCGTCA----GACAG
GTTCAGTGTTTGGGGCATAGTTTTTGTTGGCCGAAACAAGAGACAGTGCACC-----TAGCAGAGTTGCCTGGCTTCTTG
AGATATATCCAAATTAGGCAACCAACTAACGCGATTCGAA---ATCATGAGAGTGAAGCAAGCATGCATGCCCATTGTCT
AGAGATCAGCCAACCGAATCAGTATACTACTCCCTCCGTTCCTAAATATAAGTCTTTGTAGAGATTTCACTATGAATCAC
ATACGGATGTATTTGGATGCATTTAGAGTATAGATGCACTCATTTTGCTCCGTATGTGGTCCATAGTGGAATCTCTCCAA
AGACTTATATTTAGGAACGGAGGGAGTAGTCAGGATCTGGATCTCGTTTAGGTTTCAGCATAACAAAACCAAGCGATAAC
CGGTGAGTCATCAGGAACGGAGCGGATGAGATCGAGCGAGGTTGTTTAGTTAGCG-CCCTAATCCTCCTAATCACTCACA
CCTGCGTTTGACTTGCCTGATGCTTGGCATTTTTAATCAGATGAGGGTGCTGATCATCATCATCATCATCTGCCCTGGCC
CTGGGGTCACAGTGCTCGGCTCAATTGCGGCATGTGCAACATGTACTAGTATAATTCTGGGGACCC-GGGAATCGAATTA
CAAAACTTGGG----GATTATTGATTGGTTTGGATAGTATTCTGTTCTGCTTCGCGTAGGCCAGCGCTGCGCCACCGGCT
CTCGAGATTTGGTTAGATCTCCTCCCTTTC-TTTTTCTTTCTGTACTTTGTACTTTGC-----CTCCTTTTCTTGCGGTT
CTGTTCTACTCCGTGGGATGGACGGCCCCTCGCTAACCACCCC---TGTATATATAAAACCGCTGCTTCCTGTTGCCACC
TTGCCCAGCTGATTAAGCTACTTACTTGTCAACCAAATCAACAGGCATCAGCT---CCATCCATCCCCTTGTGCTGCCTC
TGCCCGATGTCGACGACGGTGCAGGAGCCGCCGCACGTCCTGGCCGTGGACGACAGCCTCGTCGACCGCGTCGTCATCTC
CAGGCTCCTCCGCAGCTCCAAGTACAGAGGTA-----CCGCTTCATCCCATTCCATGACTGAATCTGAACTGAGAAGAAA
TGAGCCTTGAATGAACT----------GGACTGAAACTTCTTTCTAATTTGTGCAGTGACGACGGTGGACAGCGGGAAGA
AGGCGCTGGAGGTGCTGAGCCTGGGCCACGAGAGCGTGCAGCTGATCATCACGGACTACTGCATGCCGGAGATGACCGGC
TACGACCTGCTGAAGCGGGTCAAGGAGTCGGCAGAGCTGCGCGGCATCCCGGTGGTGATCATGTCGTCGGAGAACTCGCC
GTCCAGGATCCGCCGGTGCCTCGACGAGGGCGCGGAGGAGTTCCTCATCAAGCCGGTGCGCCCCTCCGACGTCTCCCGCC
TCTGCAACCGGGCCATCGCCGCCATGCCCATGCGGTAGCAACGGCCGGTCG------------GTGCCGTGCTGCTGATC
GGTGCTAGCCTGCTAGCTTGCTAATCCAATCCTCCCTCCCTCC----TCTGCTGAGTTCTCACTGACGAGATATCCCCAT
GTACATGCGTCTGCTGCAGGGTTGCATC------CCATGGTGAAATCAAAACTGAATGAATTCCATGACAACCCACGGAA
TGTATGTATTCC-----TTACTTGCCAATGTATGAAATCCACCACTAACTGTGAAACAGTAAAGCGGCAGGCCACCAAT-
--------------------------------------------------------------------------------
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-----------------
>SNPs
--------------------------------------------------------------------------------
----------------------------------------------------------------------S---S-----
-----S--------------------------------------------------------------------------
-------------------------------------------S------------S-SS----------S---------
-----------S--------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------S---------------------------------------
------------------------------------------S-----------------------S-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--S----------------------------------------------------------------------S------
--------------------------------------------------------------------S-----------
-S---------------------------------------------------------------------S--------
-----------------------------S--------------S-----------------------------------
-----------------------------------------------------------------------------S--
--------------------------------------------------------------------------------
--------------------S--S--------------------------------------------------------
----------------------------------S-----------SSSSSSSSSSSS-----S-------S---S----
------S-S----S--------------------S---------------------------S---S-------------
----------------------------------------------------------------------------S---
--------------------------------------S-----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------S------------------S----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----S------------------------SS---------------------------SSSSS-----------------
--------------------------------------S-----------------------------------------
--------------------------------------------------S-----------------------------
-----------------------------------------------------------S--------------------
----------------------------------------------------------------------S---------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-S----------------------------------------------------------------S-------------
------S---S---------------------------------S-----SSSSSSSSSSSSS-----------------
----------------------------S-----------S---------------------------------------
----------SSSSS-SSS-S-S-----------S------------------------------------S--------
------------S----------S----S-------------S-----SS----------------SS------S----S
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSS
>forward_1362
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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---------------------------------------------------------------CTCCCGAGATCGATGAG
CG------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------
>reverse_2700
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------------------------------------------------------TTGCCTCCTTTTCTTGGGGT-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------
>forward_1701
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-CACAGTTCGTGCGTGATCAC-----------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------
>reverse_3825
--------------------------------------------------------------------------------
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----------------------------------------------------------------CTGCAACAACCTTGTG
TGGG----------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------
