>input_sequence_43384
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------------------------------------------------------------ATCCTTTCTCTCTCCAACCC
TACCTCCTTTGTTCTGATTATAATCACTAGATCGAGGTACAGGATGGTACCTTACATGCTGTGCTTTCAGTTCGTGGCGT
GTTGCCTCCTGGTCCTGCTCTACTCGCTTCGATCTGGTTCTGCCAGCAGCGCTGGCCATGGCCCGAGAAGCTACCCGGTC
ATCGGCTGCCTGCTCGCCTTCTACGAGAACCGGCGGCGGCTCCTCGACTGGTACACCGAGATGCTGGCGGCCTCGCCCAC
CCAGACGATCGTCGTTGACCGCCTGGGTGCGCGCCGGACCGTGGTGACCGCGAACCCGGCCAACGTCGAGTACATCCTCC
TGGGCAACTTCGGCAACTTCCCCAAGGGGAAGCCCTTCACCGACGTGCTCGGCGACCTGCTCGGCAATGGCATCTTCAAC
GTCGACGGCGACAAGTGGTTCGCCCAGCGGAAGCTGGTCAGCCACGAGTTCTCGGCGCGCACGCTCCGTGAGCTGGAGAT
TGCCGTGCTCGAGGCGGAGGCGCTCGACCGCCTCGTGCCGGCGATGGAAGCGGCCGCTGAGCCGGGCGGCGGCGCCGTGG
ACATGCAGGATGTCCTCCGCCGGTTCGCATTCGACGTCATCTGCCGTGTCTCGCTGGGCGTTGACCCGGGATGCCTCGAC
CCGGCATTGCCCGCGCCGAGGCTGGCCACCGCGTTCGACGCCGCCGCCGGGATCATCGCCAGGCGCGGGGCTGCGCCGCT
GGCCGCCGTCTGGAAGATCAAGCGTGCGCTCAACATCGGCTCGGAGCGGCGGCTGCGCGAGGAGGTCAAGGTTATTCACG
AAGCCGTCATGGATCTCATCAGGAGCCGCAAAAAGGAGCGCTTCCTGGTCAACGCCGGCGACGAGAGGAACGACCTGCTG
TCGCGGATGATCGATTGCGGCTACGCCGACGAGGATATCCGGGACATGGTGATCAGCTTCATCATGGCCGGCCGCGACAC
GACGTCGTCGGCGCTGACCTGGTTCTTCTGGCTGCTCATGCGCCACCGCGACGTGGAGCGAGACGTGCTGGAGGAGATCA
CGAGCATGAGACGAGACAGCAGCAACGGCACCTACGCCGGCGAAGGCTTCGACCTTGACGACTTCCGCAGGATGCGGGTG
CTCCACGCGGCGCTGAGCGAGACCATGCGGCTGTACCCGCCGGTGGCGTGGGACTCGAAGCACGCGGCGGCGGCAGACGT
GCTGCCGGACGGCACCCGTGTCTGGCCCGGCGACCGGGTCACCTACTTTCAGTACGGGATGGGGAGGATGGAGGCCATCT
GGGGCTCCGACGCCGGCGAGTTCAGCCTGGAGAGGTGGCTCGCACTGCCGACGGACAGCAACTCGGCGTCTGGCGGCGTG
TCTCCCTTCAAGTACCCGGTGTTCCAGGGCGGCCCGCGGACGTGCCTGGGCAGGGAGATGGCCTTTGTGCAGATGAAGTT
CGTGGCCGGCGCCATACTCCGCCGGTTCGACCTCCGCCCCGTCGACGAGGGCCGCACGCCGGCGTTCCTGCCGCTGCTCA
CTTCCCACATGCACGGCGGGCTCAAGGTGACGGTGAGGAGGAGGAAGGTGGAGA---CCACAGGCAACGGCCTGCAGGAC
GCAGCTACAGCCGAAAACCGATCATCATTTTT---TAGCTAGTGGTAAATGGTCACA--CCCTGGTGTAAAAAAGCAAAT
AATTTTTCATATACATCCACTTTGTACATGCCCATACATACATACGATGATCATATGAATCTGATGTACACACAGAAAAG
AATTCAATTCCCGCACAGAATAAA--------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------
>chr1A_1_TraesCS1A01G351600
TAACATCGTACCAACGTTGGATGGATTTCAATCGTAGATAAAGTAATTTTGTATTGTTTTAGAGGAAATGCCTCAGCCCG
ACTTTAAATTAATAAATTCAACGTCAACAACAGTAAGAACCGAACAGAGTGTAAGAGAACACCGAATGAAGTTTAGACGG
CCACAACCGGCAAACAAGGCGCCCAGGCCAAGACCAAAAGCTAAACATCTAAACAGGAGCGGACGAAGACTTACACGACA
AAGAAGAGGGAGCTCCCACAACGGCGACCTAGCCCGATCAATCCCGGAGATATAAACAGCAGTAGCACGCACACGGCCAA
TGAGGACCTCCAGAACCGCCTTGTCAGACTCCTTAATTAGAGATTTCCACTGCTGCAAGAATACGGACAGTTTGAATATG
ACATTAGCCGCTGAGTTAGGGAACACATGTTCAATAT-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------TAGATTTGAATA
TAGACAACTTTGTATTGTTGCAAAGAAAGAAAAGAACCACAATAACTGT-AATTAGCACGTTCAATAATTAAGTTTGTAA
CTGCCGAATTATGTGACCGGTACATTTGTCTTAATTATGCTCAAACTACTAATGTATCAAAATTTAACATCCAATTTATT
GGTGCACTTCAATGGTATTTAAGCTTACGAAAGTAAATTTTATAGAAACGTAATCTACTAATCCTCACCT----------
------------------ATCACCCGTTCCGGCTATGCTTCTAGTGTCATCGGATTCGATTGGC----------------
----------------------GTTTGTCTTCGATGGATCCACGTGGATCAAGTCTTCGTTGTGTGTCCATGTGTCATGT
TAAATTATTTCGATCTATGCTTTTCTTCATCGACGACGGTTGATATTCTGGTGGGCTGGTACAGTGGTACTGGAGGGCCT
AAGTGGTTTTCTAGAATTCTATGCTAGCACTTAATAAATATATGGCCATCGCTTTCCGGGGGAGAAAAA--AAGGAGCAG
CAAAGGGCGAGCAGGTACTTGGTATATATATGTCGACAAATACTGTGTGCTGCCTCGTCCATCCTTTCTCTCTCCAACCC
TACCTCCTTTGTTCTGATTATAATCACTAGATCGAGGTACAGGATGGTACCTTACATGCTGTGCTTTCAGTTCGTGGCGT
GTTGCCTCCTGGTCCTGCTCTACTCGCTTCGATCTGGTTCTGCCAGCAGCGCTGGCCATGGCCCGAGAAGCTACCCGGTC
ATCGGCTGCCTGCTCGCCTTCTACGAGAACCGGCGGCGGCTCCTCGACTGGTACACCGAGATGCTGGCGGCCTCGCCCAC
CCAGACGATCGTCGTTGACCGCCTGGGTGCGCGCCGGACCGTGGTGACCGCGAACCCGGCCAACGTCGAGTACATCCTCC
TGGGCAACTTCGGCAACTTCCCCAAGGGGAAGCCCTTCACCGACGTGCTCGGCGACCTGCTCGGCAATGGCATCTTCAAC
GTCGACGGCGACAAGTGGTTCGCCCAGCGGAAGCTGGTCAGCCACGAGTTCTCGGCGCGCACGCTCCGTGAGCTGGAGAT
TGCCGTGCTCGAGGCGGAGGCGCTCGACCGCCTCGTGCCGGCGATGGAAGCGGCCGCTGAGCCGGGCGGCGGCGCCGTGG
ACATGCAGGATGTCCTCCGCCGGTTCGCATTCGACGTCATCTGCCGTGTCTCGCTGGGCGTTGACCCGGGATGCCTCGAC
CCGGCATTGCCCGCGCCGAGGCTGGCCACCGCGTTCGACGCCGCCGCCGGGATCATCGCCAGGCGCGGGGCTGCGCCGCT
GGCCGCCGTCTGGAAGATCAAGCGTGCGCTCAACATCGGCTCGGAGCGGCGGCTGCGCGAGGAGGTCAAGGTTATTCACG
AAGCCGTCATGGATCTCATCAGGAGCCGCAAAAAGGAGCGCTTCCTGGTCAACGCCGGCGACGAGAGGAACGACCTGCTG
TCGCGGATGATCGATTGCGGCTACGCCGACGAGGATATCCGGGACATGGTGATCAGCTTCATCATGGCCGGCCGCGACAC
GACGTCGTCGGCGCTGACCTGGTTCTTCTGGCTGCTCATGCGCCACCGCGACGTGGAGCGAGACGTGCTGGAGGAGATCA
CGAGCATGAGACGAGACAGCAGCAACGGCACCTACGCCGGCGAAGGCTTCGACCTTGACGACTTCCGCAGGATGCGGGTG
CTCCACGCGGCGCTGAGCGAGACCATGCGGCTGTACCCGCCGGTGGCGTGGGACTCGAAGCACGCGGCGGCGGCAGACGT
GCTGCCGGACGGCACCCGTGTCTGGCCCGGCGACCGGGTCACCTACTTTCAGTACGGGATGGGGAGGATGGAGGCCATCT
GGGGCTCCGACGCCGGCGAGTTCAGCCTGGAGAGGTGGCTCGCACTGCCGACGGACAGCAACTCGGCGTCTGGCGGCGTG
TCTCCCTTCAAGTACCCGGTGTTCCAGGGCGGCCCGCGGACGTGCCTGGGCAGGGAGATGGCCTTTGTGCAGATGAAGTT
CGTGGCCGGCGCCATACTCCGCCGGTTCGACCTCCGCCCCGTCGACGAGGGCCGCACGCCGGCGTTCCTGCCGCTGCTCA
CTTCCCACATGCACGGCGGGCTCAAGGTGACGGTGAGGAGGAGGAAGGTGGAGA---CCACAGGCAACGGCCTGCAGGAC
GCAGCTACAGCCGAAAACCGATCATCATTTTT---TAGCTAGTGGTAAATGGTCACA--CCCTGGTGTAAAAAAGCAAAT
AATTTTTCATATACATCCACTTTGTACATGCCCATACATACATACGATGATCATATGAATCTGATGTACACACAGAAAAG
AATTCAATTCCCGCACAGAATAAAAAC-ACTGATTGATTCCAAGAAACTCGAGTGGTACTTGATTTCCGGCAAGAAATTT
TCGCCGTGGTCCCATCAATTCTATTTTATTTCGAACAGTAGGGTCCCATCAAAGTGAAACGAACTAGTACCGGTTGATGT
GCTCGCAGTAAACTTTTTTCTTTAGGGGATGCTTGCAGCAGT-------------------TTGAACACTGTTTGTAAAA
CGGAGCCGTGAACTTGTCAGAGTCAGACGAGATAAACTTGAAGGAAAGTTCAGGCAGATGCTAGTAGGAGTACTAATCAA
TAATTCCTGTCAAGAAACTAGTAGAATTAGAATAAAGCGGGACGCACGTTTCA-TTTGGCGACGCGCACATGTGGTATAA
AAAGGTCGTCGCCCGTCCGATGTGAGGTTGGAAAGTTTGATTGGTTTTGTTTCAGTTAAGATGGGCGCATCAATGAGGAG
CATGTGGGTTTTTTCCACGGATGGGGTTGGGTGGGGGAGGATGATGTAG---------CTATCGGGCGCAGGGGTGGGAA
ACTAAACGCTAGCTGCTGCGAGATGGACTTTTTTTCTAGCTGTTGAAAGCTCGGCTTTGCTTTTTTAGTCGCTGAAATAT
CAAGTTGCCGGGGAGGAA-AAGGGGTCAGGCGAATGGGGCGCGTTCGAGGAAACCCCCACCCCACCCCTAGGGGGAATAG
ATATATTCCGGCGGTTCAATGCGTCATGGACCACGTGCGTAATGTGTGGCGTGTCGTGATCTGGCCCGGCGCGATCCTGC
CACCCCTTGCTTTCACACCGGGAAGTCTGTCTCCTGCCCCCATATTGTATTGT-TTTCTCTGGAGAACGACATCGTGTTT
TATTACT-TTTGGGAGCTGGACTTGTTTCCTCGTGATGTGGCCACTGAATCATACAGTGCGTACATAACAGCTGGCGGGA
ATATCTTTGGAAGTTCGCTGTGTAGA-TTTGCTTCAACGACAAAAGCTGGAAGAAACGGCAAAAAACGAAAAGATAAGGA
GCGCACGTTCGCCCGGCT
>chr1D_1
TAACATCGTACCAACGTTGGATGGATTTCAATCATAGATAAGATAATTTTGTATTGTTTTAGAGGAAAGGTCTCAACCTG
ACTTTAAATTAATAAAGTCAATGTCAGCAACAGTAACAACCGAACAGAGTGCAAGAAAACACGGAATAAAGTTTAGACGG
CCACGACCGGCAAATAAGGCGCGCAGGCCAAGACCAAAAGCTAAACATCCAAACAGGAGCA---------------GACG
AAGAAGAGGGAGCTCCGACTATGGCGACCTGGCCCGATCAATCCCGGAGATATAAACAGCAGTAGCATGCACATGGCCAA
TGAGAACCTCCAGAGCCGCCTTGTCAACCTCCTTAATTAGAGATTTCCACTATTGCAAGAATATGGACAATTTGAATATG
ACATTAACCGTCAAGTTAGGGAACACCTGTTCAATACTACCTCTGTCTTGGTGTATAAGTCATTCGTGTAGTTTTAGGTC
GACAATTTAACTATCTAAATATGTATTATATGTGACAAAAATATATATTTAGAAACTACATTTTAACTATCTAAATATGT
ATTATATGTGATAAAAATATATATTTAGAAACTACATCGTGTAGAAATCTAGTAATATACTTTTCATGACATATAACATA
TATTTAATTCCTCAAATCGATGACCTAAAACTACGCGAATGACTTATATACCGGGACAGAGGGAGTAGTAAATTTGAATA
TGGACAACTTTGTATTGTTGCAAAGAAAGAAAAGAACCACAATAACTGTTAATTAACACGTTCAATAATTAAGTTTGTAA
CTGCCGAATTACGTGACCAGTAAAATTGTCTTAATTATGCTCAAACTACTAATGTATCAAAATTTAACATCCAATTTATT
GGTGCACTTCAATGGTATTTAAGCTTAGAAAAGTAAATTTTATAGAAACATAATCTACTAATCCTCACCCATCACCCGTT
TTTTTTTTGCGGAAACCCATCACCCGTTCTGGCTGTGCTTCTAGCGTCATCGGAGTGTATGTGGAGATTTTTCTCCAGTG
TATCGTGCGGGATTCGGTCGGTGTTTGTTTTCGGTGGATCCACGTGGATCAAGTCTTCGTTGTGTGTTCGTGTGTCACGT
TGAATCATTTCGATCTATGCTTCTTTTCATCGGCGGCGGTTACTATTCTGGTGCGCTGGTC--------CTGGAGGGCTT
GAGTGGTTTTCTAAAATTCTATGCTAGTACTTAATAAATATATGGCCATCGCTTTCCGGGAGA-AAAAA--AAAGAGCAG
CAAAGCGCGAGCAGGTACTTGGTATATATATGTCGACAAATACTGTGTGCGGCCTCGTCCATCCTTTCTCTCTCCAACCC
TACCTCCTTTGTTCTGACTATAATCACTAGATCGAGGTACAGGATGGTACCTTACATGCTGTGCTTTCAGTTTGTGGCGT
GTTGCCTCCTGGTCCTGCTCTACTCGCTTCGATCTGGTTCTACCAGCAGCGCTGGCCATGGCCCGAGAAGCTACCCGGTC
ATCGGCTGCCTGCTCGCCTTCTACGAGAACCGGCGGCGGCTGCTCGACTGGTACACCGAGATGCTCTCGGCCTCGCCCAC
CCAGACGATCGTCGTTGACCGCCTGGGCGCGCGCCGGACCGTGGTGACCGCGAACCCGGCCAACGTCGAGTACATCCTCC
TGGGCAACTTCGGCAACTACCCCAAGGGGAAGCCGTTCACCGACGTGCTCGGCGACCTGCTCGGCAATGGCATCTTCAAC
GTCGACGGCGACAAGTGGTTCGCCCAGCGGAAGCTGGTCAGCCACGAGTTCTCGGCGCGCACGCTCCGTGAGCTGGAGAT
CGCTGTGCTCGAGGCTGAGGCGCTCGACCGCCTCGTCCCGGCGATGGAAGCGGCCGCTGAGCCGGGCGGCGGCGCCGTCG
ACATGCAGGATGTCCTCCGCCGGTTCGCATTCGACGTCATCTGCCGTGTCTCGCTGGGCGTTGACCCGGGATGCCTCGAC
CCGGCATTGCCCGCGCCGAGGCTGGCCACCGCCTTCGACGCCGCCGCCGGGATCATCGCCAGGCGCGGGGCTGCGCCGCT
GGCCGCCGTCTGGAAGATCAAGCGCGCGCTGAACATCGGCTCGGAGCGGCGGCTGCGGGAGGAGGTCCAGGTTATCCACG
AAGCCGTCATGGATCTCATCCGGAGCCGCAAAAAGGAGCGCTTCTTGGTCAACGCCGGCGACGTGAGGAACGACCTGCTG
TCGCGGATGATCGATTGCGGCTACGCCGACGAGGATATCCGTGACATGGTGATCAGCTTCATCATGGCCGGCCGCGACAC
GACGTCGTCGGCGCTGACCTGGTTCTTCTGGCTGCTCATGCGCCACCGCGACGTGGAGCGAGACGTCCTGGAGGAGATCA
CAAGCATGAGACGAGACAGCAGCAACGGCACCTACACCGGCGAAGGCTTCGACCTCGACGACTTCCGCAGGATGCGGGTG
CTCCACGCCGCGCTGAGCGAGACCATGCGGCTGTACCCGCCGGTGGCGTGGGACTCGAAGCACGCGGCGGCGGCAGACGT
GCTGCCGGACGGCACCCGCGTCGCGTCCGGCGACCGGGTCACCTACTTTCAGTACGGGATGGGGAGGATGGAGGCCATCT
GGGGCTCCGACGCCGGCGAGTTCAGCCTGGAGAGGTGGCTCGCACTGCCGGCGGACGGCAACGCGGCGTCTGGCGGCGTG
TCTCCCTTCAAGTACCCGGTGTTCCAGGGCGGCCCGCGGACGTGCCTGGGCAGGGAGATGGCCTTCGTGCAGATGAAGTT
CGTCGCCGGCGCCATACTCCGTCGGTTCGACCTCCGCCCCGTCGACGAGGGCCGCACGCCGGCGTTCCTGCCGCTGCTCA
CTTCCCACATGCACGGCGGGCTCAAGGTGACGGTGAGGAGGAGGAAGGTGGAGAGTACCACAGGCAACGCCTTGCACGAC
GCAGCTACAGACAAGAGCCGATCATCTTTTTT---TAGCTAGTGGTAAATGGCAGCATTCCCTCGTGTAAAAAAGCAAAT
AATTTTTCATATACATCCACTTTGTACATGTCCATACATACATAGGATGATCATATGAATCTGATGTACACACAGAAATG
AATTCAATTCCCCCACAGAATAAAAAATACCGAGTGATTCCAAGAAACTTGAGTGGCACTTGATTTCCGGCAAGAAATTT
TCTA-GGGGTCCCATCAATTCTATTTTACTTTGAACAGTGGGGTCCCATCAAAGTGAAACGAACTACTGT---TTGATGT
GCTTGCA-GTAAACTTTTTCTTCAGGGGATGCTT---GCAGTAAACCAAAAACCAAGATAGTTGAACACTGTTTGTGAAA
CGGGACTGTGAACTTGTCAGAGTCAGAGGCGATAAACTTCAAGGAAAGTTCAGGCAGATGCTAC------TACTAATCAA
TAATTCCTGTCAAGAAACTG---GAATTAGAATAAAGCGGGACGCACGTTTCA-TTTAGCGACGCGCACATGTCGTATAA
AAAGGTCGTCGCCCGTCCGATGTGAGGTTGGAAAGTTTGATTGGTTTTGTTTCAGTTAAGATGGGCGCATCAACGAGGAG
CATGTGGGTTTTTTCCACGGATGGGGTTGGGTGGGGGAGGATGATGTAGTGCACGTAGCTATCGGGTGCACGTAGCTATC
G-------------GCTGCAAGATCAACTTTTTTTCTAGCTGTTGAAAGCTCGACTTTGCTTTTTTAGTCGCTGAAAGAT
CAACTTGCCGGGGCGG-A-AAAGGGTCGGGCAAATGGGGCGCGTTCGAGGAAACCCCCACCCCACCCCTAGCGGGAATAG
ATATATTCCGGCGGTTCACTGCGTCATGGACCACGTGCGTAATGTGTAGCGTGTCGTGATCTGGCCCGGCGCGATCCTGC
TGCCCCTTGCTTTCACACCGGGAAGTCTGTCTCCTGCCCCCATATTGTATTGT-TTTCT-TGGAGAACGACATCGCGTTT
--TATTACTTTGGGAGCTGGACTTGTTTCCTCGTGATGTGGCTACTGAATCA-----TGCGTACATAACAGCTGGCGGGA
ATATCTTTGGAAGTTCGCTGTGTAGATTTTGCTTCAACGACAAAAGGTGGAAGAAACAATAACAAG-GAAAAGATAAGGA
GCGCACGTTCGC------
>chr1B_895
--------------------------------------------------------------------------------
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--------------------------------AATAAATATATGGCCTTCGCTTTCCGGGAGA-AAAAAAGAAAGAGCAG
CAAAGCGCGAGCAGGTACTTGGTATATATATGTCGACAAATACTGTGTGGTGCCTCGTCCATCCTTTCTCTCTCCAACCC
TACCTCCTT-GTTCTGACTATAATCACTAGATCGAGGTACAGGATGGTACCTTACATGCTGTGCTTTCAGTTTGTGGCGT
GTTGCCTCCTGGTCCTGCTCTACTCGCTTCGATCCAGTTCTACCACCAGCGCTGGCCATGGCCCAAGAAGCTACCCGCTC
ATCGGCTGCCTGCTCGCCTTCTACGAGAACCGGCGGCGGCTCCTTGACTGGTACACCGAGATGCTGGCGGCCTCGCCCAC
CCAGACCATCGTCGTTGACCGGCTGGGCGCGCGCCGCACCGTGGTGACCGCGAACCCGGCCAACGTCGAGTACATCCTCC
TGGGCAACTTCGGCAACTACCCCAAGGGGAAGCCCTTCACCGACGTGCTCGGCGACCTGCTCGGCAATGGCATCTTCAAC
GTCGACGGCGACAAGTGGTTTGCCCAGCGGAAGCTGGTCAGCCACGAGTTCTCGGCGCGCACGCTCCGTGAGCTGGAGAT
TGCCGTGCTCGAGGCCGAGGCGCTCGACCGCCTCGTGCCCGCGATGGACGCGGCCGCTGAGCCGGGCGGCGGCGCCGTCG
ACATGCAGGATGTCCTCCGCCGGTTCGCATTCGACGTCATCTGCCGTGTCTCGCTGGGCGTTGACCCGGGATGCCTCGAC
CCGGCATTGCCCGCGCCGAGGCTGGCCACCGCGTTCGACGCCGCTGCCGGGATCATCGCCAGGCGCGGGGCTGCGCCGCT
GGCCGCCGTCTGGAAGATCAAGCGCGCGCTGAACATCGGCTCGGAGCGGCGGCTGCGGGAGGAGGTGAAGGTTATACACG
AAGCCGTAATGGATCTCATCCGGAGCCGCAAAAAGGAGCGCTTCCTGGTCAACGCCGGCGACGTGAGGAACGACCTGCTG
TCGCGGATGATCGATTGCGGCTACGCCGACGAGGATATCCGTGACATGGTGATCAGCTTCATCATGGCCGGCCGCGACAC
GACGTCGTCGGCGCTGACCTGGTTCTTCTGGCTGCTCATGCGCCACCGCGACGTGGAGCGAGACGTCCTGGAGGAGATCA
CGAGCATGAGACGAGACAGCAGCAACGGCACCTACGCCGGCGAAGGCTTCGACCTCGACGACTTCCGCAGGATGCGGGTG
CTCCACGCGGCGCTGAGCGAGACCATGAGGCTGTACCCGCCGGTGGCGTGGGACTCGAAGCACGCGGCGGTGGCAGACGT
GCTGCCGGACGGCACCCGTGTTGGGCCCGGTGACCGGGTCACCTACTTTCAGTACGGGATGGGGAGGATGGAGGCCATCT
GGGGCTGCGACGCCGGCGAGTTCAGCCTTGAGAGGTGGCTCACACTGCCAGCGGACGGCAACGCGGCGTCTGGCGGCGTG
TCTCCCTTCAAGTACCCGGTGTTCCAGGGCGGCCCGCGGACGTGCCTGGGCAGGGAGATGGCCTTCGTGCAGATGAAGTT
CGTCGCCGGCGCCATACTCCGCCGGTTCGACCTCCGCCCCGTCGACGAGGGCCGCACGCCGGCGTTCCTGCCGCTGCTCA
CTTCCCATATGCACGGTGGGCTCAAGGTGACGGTGAGGAGGAGGAAGGTGGAGA---CCA--------------------
-------CAGCCGAGAACCGATCATCTTTTCTTGCTAGCTAGTGGTAAATGGTAACA--CCCTCGTGTAAAAAA-CAAAT
AATTTTTCATATACATCCACTTTGTACATGTCCATACATACATAGGATGATCATATGAATCTGATGTACACACAGAAATG
AATTCATTTCCCCCACAGAATAAAAAC-A--GAGTGATTCCAAGAAACTCGAGTGGTACTTGATTTCCGGCAAGGAATTT
GCGCTGGGGTCCCGTCAATTTTATTTTATTTTGAACAGTGGGGTCCCACCAAAGTGAAACGAACTAGTACT-GTTGATGT
GCTTGAA-TAAACTTTTTTCTTCAGGGGATGCTTGCAGCAGTAAACTGAAAACCAAGATTGTAGAAAACTGTTTGTAAAA
CGTAACTGTGAACTCGTCAGAGTCAGACGAGATAAACTTCAAGGAAAGTTCAGGCAGATGCTG---------CTAATCAA
TAATTCCTGTCAAGAAACTA---GAATTAGAATAAAGCGGCACGCACGTTTTGTTTTGGTGTTGCGCACATGTCGTATAA
AAAGGTCGTCGCCTGTCCGATGTGAGGTTGGAAAGTTTGATTGGTTTTGTTTCAGTTAAGATGGGCGCATCAATGAGGAG
CATGTGGGTTTTTTCCACGGATGGGGTTGGGTGGAGGACGATGATGTAGTGCACGTAGCTATCGGGTCCAATGGTGGGAA
ATTAAACGCTAGCTGC-GCAAGATCAACTTTTTTTCTAGCTGTTGAAAGCTCAACTATGCTTTTTTAGTTGCTGAAAGAT
CAACTTGCCGGGGCGG-AAAAAGGATCGGGCAAATGGGGCGCGTTCGAGGAAACCCCCACCCCACCCCTAGGGGGAATAG
ATATATTCCGCCGGTTCAATGCGTCATGGACCACGTGCGTAATGTGTAGCGTGTCGTGATCTGGCCCGGCGTGATCCTGC
CACCCCTTGCTTTCACACCGGGAAGTCTGTCTCCTGCTCCCATATTGTATTTTATTTTTCTGGAGAAGGACATCGTGTTT
TATATTACTTTGGGAGCTGGATTTGTTTCCTCGTGACGTGGCTACTGAATCA-----TACGTACATAACAGCTGGCGGGA
ATATCTTTGGAAGTTCGCTGTGTAGATTT-GCTTCAACGACAAAAGCTGGAAGAAACAACAAGAAA-AAAAAAGA-----
------------------
>SNPs
---------------------------------S-------SS-------------------------S-S----S--S-
----------------S----S----S---------S--------------S----S-----S----S------------
----S---------S-------S--------------------------S----------SSSSSSSSSSSSSSSS---S
----------------S--S-S--------S------------------------------------S-----S------
----S---------S-----------SS-----------------------SS----------S-----S----------
------S---SSS-------------S---------S-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------S---------
-S-----------------------------------------------------S------------------------
-----------S------S---S-S-------------------------------------------------------
---------------------------SS--------------------S-------------------S----------
-----------------------------S----S---------S---------S-SS--SS-S----------------
----------------------------S----S---------------------------------S-S-------S--
-S---S----------------S-S-------S--S-----SS----------S------SSSSSSSSS---------S-
S------------S-------------S--------------------------------S--S---------S------
-----S--------------------------------------------------------------------------
-----------------S------------------------------------------------------S-------
-----------------------------------------S--------------------------------------
--------------------------------------------------------------------------------
---------------------------S----------------------------------------------------
------------------S-------------------------------------------------------------
--------------------------------------------------------------------------------
---------------S--------------------------------------------------------------S-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------S-----S--------------------------S-----------------S----
--------------------S------------------------------------------S----------------
-----------------------------------------S--------------------------------------
------------------------------------------------------------------S-------------
-------------------------------------------------------S------------------------
--------------------------------------------------------------------------------
----------------------S---------------------------------------------------------
--------------------------------------------------S-----S-----S-----------------
-----------------------------------------------------------------S--------------
---S----------------------------------------------------------------------------
---------------------------------------------------------------------S-S----S---
--------------S-----------S--------------------------S---------S----------------
------------------------------S-------------S---------------------------------S-
------------S-----------------S--S----------------------------------------------
----S-S------------------------S-------S------------------------------SS--------
---S---S--------------S---------------------------------------------------------
----S-S--------------------------------S-----------------------SSSSSSS----------
--------------------SSS--------------------------------------------------S------
--------------------------------------------------------------------------------
------------------------------------------------------------------S---S---------
-S-----------------S----SS---------------------------S-----------------------S--
---S---------S--S----S-----S---S------------------------------------------------
-----------------------------------------------S--------------------------------
--------------------------------------------------------------------------------
---SSSS-----------------------------------S---------SSSSS-----------------------
---------------------------------------------------------SS---S---S-------------
------------SSSSSS
>forward_230
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------AAACAGGAGCGGACGAAGAC----------
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>reverse_2387
--------------------------------------------------------------------------------
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------------------------------------------------------------------GCTGGAGGAGATCA
CGAGC---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------
>forward_427
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------CCGCTGAGTTAGGGAACACA-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------
>reverse_2456
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------------------------------------------------------TGACGACTTCCGCAGGATG------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------
>forward_1201
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------CAGTGGTACTGGAGGGCCT
A-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------
>reverse_2786
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------TGTGCAGATGAAGTT
CGTGG---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------
>forward_2156
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------CGCGAGGAGGTCAAGGTTATT----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------
>reverse_3667
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------CGCAGGGGTGGGAA
ACTAAA--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------
