>input_sequence_43362
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-----------------------------ATGGACATCCAAGGTAAAATACGGTCCTCAAATACAGTAGTATTTTCAGTC
TAATCAGATCAAGCATATATACGTACGTCCTGTGCGAAAACAACTTGACATGAAATGACACTATTAACATTACGTGATGG
ATGATCTTTTCTTAAGCTTGAAATGTCAACAGTTTGGTTGGGTCAAAGAAATAAACGTAATA---AGAAACAAGCCTGTT
CGTAATATCAATGTCAGAGTCAGAACATCAGAACGACTATGGTTGAATTGATTAACAAGCCTGCTCATGTATAAGAACCG
TCTGAATTATGTATTGTAGTGAATTTGAATGGTACGCAAAAGAAGTGACCGGACGTGCTGAAACACTTATGCATGACCTG
AAAGCACGTGATGATGGAACGCGCGCGAGACCGGACGTTTCATGGACGACTTGCATGAAAGCACATGAGATGCATGTGCC
TATTGACGGAGCTAACCAGGCACACATGAGCAAGCAGAGTGAACGTTTGTACGATCGAAGTGAAAAATAATAAAAGTT--
----------------------------------------AAATCGGTCGTAACTACACCA--TATGTCGTTGATAACTA
CTCCTTAAGTTCCTAAATATAAGTCTTTCTAGAGTTTTCAAATAGACGATTACATACGGATGTATATCGACATATTTTAG
AGTGTAAATTAACTCATTTTGCTCTGTATGTAGACACTTGTTGAAATATCGGAGGGAGTAAATGCTAACGTTATTGCATG
ATTTTTGCTTGAAGGGCGAAGGTTTCGCTTCGGAACCATCGAAGGCCAAAGCGTCGTCATGGTCATGACTGGACTGAGCA
TGGTAAGTCCGTACATACTACAGCATTATA-TTTGTGTAGCAGTGTATCTTACAAATACTCAGAAGTTAACGTACTGTTG
CACCACGGAATGGAATCAATGAATGCAGCTCAACGCTGGTCTGACCACCCAGATGCTGTTGAGCCTGTTCCGGGTGAAGG
GCATTGTCCACTGGGGCATCGCTGGCAACGCCAACGAGGACCTCCAGATCGGCGACGTCACCATCCCCGAATACTGGGCC
CACGTCTCCCTCTGGAACTGGCAGGTAGTACACATTTGGTATTAAAAAACGTGCACATGTCATGGTCTTCCAGGATTTTG
ATTTGTGGTGCTAACAAAAATTTGTGGCTTTGGACGCCCAGCGGTTCGGCGACGGCAAGGATAACGAGCTACCGCTGGAG
GCCGCCGGCGACTACACCCGGGAGTACGGCTTCCTCAACTTCTCCGACTACACCGTGGGGCAGAGCAACCCGGAGCTATC
CGCGAACCATCTCAACAGCATCTGGTACCAGCCGGAAGAGATCTTCCCGGCGTCCGGCGAGCCGGAGGAGCGGCAGCACG
CGTTCTGGGTGCCCGCCAGCAAGCGGTACTACGCGCTGGCGAAGAAGCTGGAGGGCATGGAGCTGCCGGCGTGCGTGAAC
GCGACGACGTGCCTGCCCCGCGCGCCGCGGGTGACCCGGGTCAGCAAGGGCTGCAGCGCCAACGTGTTCCTGGACAACGC
CGAGTACCGCCAGTTCCTCCGCAAGCAGTTCGGGTGCACGCCTGTGGAGATGGAGAGCGCCGCCGTGGCCCTCGTAGCGC
ACACGCAGGGGGTGCCGTTCCTCACCATCCGCTCGCTCTCCGACCTGGCCGGGGGAGGCTCCGCGCTTGGGAACGAGGCC
AGCACCTTCATCGACATCGCCGCCAAGAACGCCGTCGAAGTCATGCTCAAGTTCGTGCCGCTGCTCGGGAAGGGCGGCGA
CGAGATGGACGACGGCGCGGCCGCGGACATGTGA----------------------------------------------
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>chr3D_1_TraesCS3D01G162500
GGGACCTTTTCACGAATGTTTAGACACTTCTTAGAAAGATTTTTTCTAACAGAGTATAGACCCTACCCCTATGAGGGTCT
TCGAGAGACTGAGCCGGCATATCATATTGAGATTTACGAAGTCACCATAGGCACCTCGTCCTA-----------------
-----------------------------AAATAAATTCAGAAATAATGCGAGCACCAGGACTTGAACCCTGGTGGGCT-
GGGATACCACCATCCCTCTAACCATCCAACTACAGGTTGGTTCGCCACTTCTTAGAAACATTGATGCCTAATCAAGCACT
CTTTCAT---AAAACAAAGCACCAATGCTATTCCGTGTAGCAAAAAAAAAACCCGACTCATTTTGCTGAGCGTTTATCCA
ATCACTTGAACTGTACATGGTCTAAAATGCTCTATGAGAGATTTTATATGATGCGAGTTGTGTTAATATAAGTTGTAGTT
ATTATACGCGGATGGTATACACCTCCGATGCATGGTCCCTTGACCACGAACAGCATCTCTACGCGATCGATCTCCACCAA
CTTAATTT--GGATCTGCATTCTTTTGGGATTTGTTAGTTGACATTATTAGTACCAGCTAGCTATAGAT---ATACGTGA
AAAATTGTGCACC-CATCGTTCGGATCCCGTTC----ATTTGATGTACTCCGTAGCCACTCCCCCCCACAGCTCCAACCC
TAGCTACCTAGCTTGCTATATATAGGTGCACCAGCTCTGCACAGGTACGCTCACACTCCAATCAGCCCCAGCACAC----
----AGTCTCGTGGTATAGAGAAACGGAGCTTGGGAAGCTAGCTAGCTCGACCATGGGTGGTGTTCGGCAGCAGCTCATG
GCCGCCGTCCTCGTGGCGGTGGCGCTGATGGCCACGGCGGCGGAGGGGTACATCACTCAGAAGACGTGGGGCGCCATCCG
CCGGGCGAACCGCGCCGGGCCGTTCGTCGGCCTCGTCGTGCCCAACACATACGAGATGGTCCCTGTGCTCGAGT-GCCCA
GCTTCGTGGCCAGCAAGAGCGTCCCTAACATGGACATCCAAGGTAAAATACGGTCCTCAAATACAGTAGTATTTTCAGTC
TAATCAGATCAAGCATATATACGTACGTCCTGTGCGAAAACAACTTGACATGAAATGACACTATTAACATTACGTGATGG
ATGATCTTTTCTTAAGCTTGAAATGTCAACAGTTTGGTTGGGTCAAAGAAATAAACGTAATA---AGAAACAAGCCTGTT
CGTAATATCAATGTCAGAGTCAGAACATCAGAACGACTATGGTTGAATTGATTAACAAGCCTGCTCATGTATAAGAACCG
TCTGAATTATGTATTGTAGTGAATTTGAATGGTACGCAAAAGAAGTGACCGGACGTGCTGAAACACTTATGCATGACCTG
AAAGCACGTGATGATGGAACGCGCGCGAGACCGGACGTTTCATGGACGACTTGCATGAAAGCACATGAGATGCATGTGCC
TATTGACGGAGCTAACCAGGCACACATGAGCAAGCAGAGTGAACGTTTGTACGATCGAAGTGAAAAATAATAAAAGTT--
----------------------------------------AAATCGGTCGTAACTACACCA--TATGTCGTTGATAACTA
CTCCTTAAGTTCCTAAATATAAGTCTTTCTAGAGTTTTCAAATAGACGATTACATACGGATGTATATCGACATATTTTAG
AGTGTAAATTAACTCATTTTGCTCTGTATGTAGACACTTGTTGAAATATCGGAGGGAGTAAATGCTAACGTTATTGCATG
ATTTTTGCTTGAAGGGCGAAGGTTTCGCTTCGGAACCATCGAAGGCCAAAGCGTCGTCATGGTCATGACTGGACTGAGCA
TGGTAAGTCCGTACATACTACAGCATTATA-TTTGTGTAGCAGTGTATCTTACAAATACTCAGAAGTTAACGTACTGTTG
CACCACGGAATGGAATCAATGAATGCAGCTCAACGCTGGTCTGACCACCCAGATGCTGTTGAGCCTGTTCCGGGTGAAGG
GCATTGTCCACTGGGGCATCGCTGGCAACGCCAACGAGGACCTCCAGATCGGCGACGTCACCATCCCCGAATACTGGGCC
CACGTCTCCCTCTGGAACTGGCAGGTAGTACACATTTGGTATTAAAAAACGTGCACATGTCATGGTCTTCCAGGATTTTG
ATTTGTGGTGCTAACAAAAATTTGTGGCTTTGGACGCCCAGCGGTTCGGCGACGGCAAGGATAACGAGCTACCGCTGGAG
GCCGCCGGCGACTACACCCGGGAGTACGGCTTCCTCAACTTCTCCGACTACACCGTGGGGCAGAGCAACCCGGAGCTATC
CGCGAACCATCTCAACAGCATCTGGTACCAGCCGGAAGAGATCTTCCCGGCGTCCGGCGAGCCGGAGGAGCGGCAGCACG
CGTTCTGGGTGCCCGCCAGCAAGCGGTACTACGCGCTGGCGAAGAAGCTGGAGGGCATGGAGCTGCCGGCGTGCGTGAAC
GCGACGACGTGCCTGCCCCGCGCGCCGCGGGTGACCCGGGTCAGCAAGGGCTGCAGCGCCAACGTGTTCCTGGACAACGC
CGAGTACCGCCAGTTCCTCCGCAAGCAGTTCGGGTGCACGCCTGTGGAGATGGAGAGCGCCGCCGTGGCCCTCGTAGCGC
ACACGCAGGGGGTGCCGTTCCTCACCATCCGCTCGCTCTCCGACCTGGCCGGGGGAGGCTCCGCGCTTGGGAACGAGGCC
AGCACCTTCATCGACATCGCCGCCAAGAACGCCGTCGAAGTCATGCTCAAGTTCGTGCCGCTGCTCGGGAAGGGCGGCGA
CGAGATGGACGACGGCGCGGCCGCGGACATGTGAGCCAGTAGCCACTTGCCCATGCATGAATAATCGGACGCCCGTGCGT
GGCGTACCGTTGTTTCGCTTTCCTTTTTC---TTTTTCCTTGCACCGCGCGATCTGTAAGGCTTGCGACTTTGCGAGCCC
TAGATCAAAAAATCACAGTTGGCGAGCCCA---------CGAGTTGCAGAGATGAATAATAATAAATCAAATAATCGGCC
GTAATGCCGTTTGTCCGGATTCCCAAT-----------------------------------------------------
TGTGCTTACATCTACGTGATGCTAGTACAATGTTAGTACTCTCACCGTTTCTTTTCACTTGGCATACTAGATGATACCCC
GCGCTGCTACGGGAATTTGAAGCACCGTGTAGGAAAAGGATAATGAAGAGA-----------------------------
--------------------------------------------------------------------------------
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------------------------------------------------------------AAATGGTAAATAATTTAAAG
AGATATAAATATATGTTTATTTGAACAATTGATAATATGATATGAAATGTCCAAACATTACAATACCGT-----------
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--------------AAAGTGTCTTTATATTTGCTTTTATTAGAATGCATCCCCCTTTGTGGAGAAAGATATGCATTGCTA
ACGTGGTTTTTTTAGGAAGCTAACATGAAAAATGCATGGAACATAAACTTTGATGATAATTCCACTGAAAACATGCTCAA
ATCCGATCAGAAGCCCAATATTCACATAAACAAAGCCCAACCATGGCCCAACACAAAGGCCTAATCCCCTAGCTCGAGGC
CCCACAAATAGCGCGCTACAGCAAAATAGCGGCGACCTCAAAATATGCTATTAGCGTGCTATATCGCGCTATAGCGTGTT
ATTAGCGAGACATTGTACACCGATATATTTAGCGAGGCAATTCTCAATACGCTATAGCGTGCTATTAGCGACGCTATAGC
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------G
CGCTATTTTTTTTCAATGGTTATCAGTG----------------------------------------------------
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-------------------------------------------------------------------------------A
TAGAACATACCACTAAACAAATCAATCAGTGACAGAAAATACGCCCTTCAAAAGCATAAG--------------------
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-----CAAAAAAAAATACAACTCCAGTAGAATTACTTTCGTACATCTGCAGAAAGATACCAATTGCTAAAAAATGAAACA
GAGCGTGC------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------
>chr3B_1
GGGACCTTTTAATAAATGCTTAGACACTTCTTAGAAACAC-TTTTTTAGCATAGTACAGACCCTACCCTTAGAGCA-TCT
TCGAGAGACTGAGCCGGCATATCATCTTAAGATTTGCGAAGTCACCGTAGGCACCTCGTCGTCGACGGGAACGTCTCCTC
CCACTGAAAGTACATCGTCGGAAATTTTGAAATAAATTCAGGAATAATGCGAGCACCAGGTCTTGAACCTTGGTGGGCTG
GGAATATCATTATCCCTCTAATCATTCAACTACAGGTTGGTTCGCCACTTCTTAGAAACATTGATGCCTAATCAAGCACT
CTTTCATCATAAAATAAAGCACCAATGCTATTCCGTGTAGCAAAAAAAAAAG-CGACTCGTTTTGCTGAGCGTTTATCCA
ACCACTTGAACTGTACATGGTCTAAAATGCTCTATGAGAGATTTTATATGATGCGAGTTGTGTTAATATAAGTTGTAGTT
ATTATACGGGGATGGCATACACGTCCGATGCATGGTCCCTTGACCAC-AACAGCATCTCTAAGCGATCGATCTCCACCAA
CTTAATTTCGGGATCTGCAAATTTTTGGGATTTGTTAGTTGACATTTTTAGTACCAGCTAGCTATAGATAATATACGTGA
AAAATTGTGCACCGCATAGTTCGGATCCCGTTG----ATTTGATGTACTCCGTAGCCACTCC-CCCCACAGCTCCAACCC
TAGCTACCTAACTTGCTATATATACGTGCACCAGCTCTACACAGGGACGCTCAGACTCCAACCACAGGCACAGCACACAA
AACAAGTCTCGTGGTATAGAGAAACGGAGCTAAGGAAGCTAGCCAGCTCGACCATGGGTGGTGTTCGGCAGCAGCTCATG
GCCGCCGTCCTCGTGGCGGTGGCGCTGATGGCCACGGCGGCGGAGGGGTACATCACTCAGAAGACGTGGGGCGCCATCCG
CCGGGCGAACCGCGCCGGGCCGTTCGTCGGCCTCGTCGTGCCCAACACATACGAGATGGTCCCCGTGCTCGAGTCGCCCA
GCTTCGTGGCCAGCAAGAGCATCCCTAACATGGACATCCAAGGTAAAGATGCT-CTACTCAAATGGTACC---TTCAGTC
TAATCAGATCAAGCATGG-----------------------------------AATGACACTGTTGGTATTACGTGATGG
ATGATCTTTTCTTAAGCTTGAAATGTCAAAGTTTGG--TGGGTCAAAGAAATAAACGTAATACTAAGAAACAAGCCTGTT
CGTAATATCACTGTCAGAGTCAGAACA-CAGAACGATTATGCTTGAATTGATTAACAAGCCTGCTCATGTATAAGAACCG
TCTGAATTATGTACTGTAGTGAATTTGAATGGTACGCAAAAGAAGTGACCGGACGTGCTGAAACACTTATGCATGACCTG
AAAGCACATGATGATGGAACGCGCGGGAGACCGGACGTTTCATGGACGACTTGCATGAAAGCACATGAAATGCATGTGCC
TATTGACGGAGCTAACCAGGCACACATGAGCAAGCAGAGTGAACGTTTGTACGATCGAAGTGAAAAATAATACGTAA---
----------------------------------AAGTTAAAATCGGTCGTAACTACACCGTGTATGTCGTTGATAATTA
AATACTACAG----------------------------------------------------------------------
-----------------------------------------------------------------TAACATTATTGCATG
ATTTTTGCTTGAAGGGCGAAGGTTTCGCTTCGGAACCATCGAAGGCCAAAGCGTCGTCATGGTCATGACTGGACTGAGCA
TGGTAAGTCCGTACATACTACAGCATTATATTTTGTGTAGCAGTGTGTCTTACAAATACTCAGAACTTAACGTACTGTTT
GCACACCATGG------AATGGATGCAGCTCAACGCTGGTCTGACCACCCAGATGCTGCTGAGCCTGTTCCGGGTGAAGG
GCATCGTCCACTGGGGCATCGCTGGCAACGCCAACGAGGACCTCCAGATCGGCGACGTCACCATCCCCGAATACTGGGCC
CACGTCTCCCTCTGGAACTGGCAGGTAGTACAGATTTGGTATTAGAAAACGTGAACATGTCATGGTCGTCCAGGATTTTG
ATTTGTGGTGCTAACAAAATTTTGTGGA-TTGGGCGGCCAGCGGTTCGGCGACGGCAAGGATAACGAGCTGTCACTGGAG
GCCGCCGGCGACTACACCCGGGAGTACGGCTTCCTCAACTTCTCCGACTACACCGTGGGGCAGAGCAACCCGGCGCTATC
AGCCAACCAGCTCAACAGCATCTGGTACCAGCCGGAGGAGATCTTCCCCAAGTCCGGCGAGCCGGAGGAGCGGCAGCACG
CGTTCTGGGTGCCCGCCAGCAAGCGGTACTACGAGCTGGCGAAGAAGCTGGAGGGCATGGAGCTGCCGGCGTGCGTGAAC
GCGACGACGTGCCTGCCCCGCGCGCCGCGGGTCACCCGGGTCAGCAAGGGCTGCAGCGCCAACGTGTTCCTGGACAACGC
CGAGTACCGCCAGTTCCTCCGCAAGCAGTTCGGGTGCACCCCCGTGGAGATGGAGAGCGCCGCCGTGGCCCTCGTGGCGC
ACACGCAGGGGGTGCCGTTCCTCACCATCCGCTCGCTCTCCGACCTGGCCGGGGGAGGCTCCGCGCTCGGGAACGAGGCC
AGCACCTTCCTCGACATCGCCGCGCAGAACGCCGTCACCGTCATGCTCAAGTTCGTGCCGCTGCTCGGCAAGAGCGGCAG
CGAGATGGACGACGGCGCGGCCGCTGACATGTGAGCCAGTAGCCACTTGTCCATGCATGAATAATCGGGTGCCCGTGCGT
GGTGTA---TTGTCTCTCTTTCCCTTTTTCCTTTTTTTCTTGGGCCGCGCTATCGGTAAGGCTTGCGAGCCCTAGCTC--
---------AAATCCCAGTTGGTGAGCCCA---------CGAGTTGCAGAGATGAATA--AATAAATCAAATAATCCGTC
GTAATGCCGTTTGTCCGGATTCGCAATTGTGTGTAATTTAATCAGACGCACTCAATTGAATCACGCCACTGATGTACGTA
TGTGCTTACATCTACGTGATGCTAGTACAATGTTAGTACTCTCACCGTTTCTTTGAACTTGGCATATTAGTTTTGTCTTG
AGTTAAAAAAATAAGTCCATATTCATAAAAAAAATCAACATTCATAATATCAAATCAATATTATTAGATACATCATGAAA
TATATTCTTATACTATATTTATTTCGTATTGTAAATTTTGATTTTTTTAATGTAATTTTGATAGAAAAAAACAAAGTTTG
ACTTATGACAGAATTAACATGCAAAGAAAAGGACACGGAGGGAGGAGTAGAAACCTCCACAGTTCTCGAAGAATGGTCAA
GCACGAGTCCCAAAGTATATACTCCCTACGTTTTTAAATATAAGTCTTTTTAGACATTTCAAATGGAATACGACATACAA
ATGTATATAGATATGTTTTAGAGTGTAGATTCACTCATTTTGCTCTGTATGTAGTCATTTGTTGGAATATCTAGAAAGAC
ATATATTTGAGAACGGGCGAAGTATGTTATAAACACTGCGTATGGTGTATGGTGTATCAACCACTCGGAAATGGGCATGC
CTACCATAAAGAGAGAGGTTCCATCATCATGCCCATTTGTTGGTCCGTTTAAAATGAAAGGACCGCTCGTGTTTTCTGAA
ACAAGTGCATGCCGCCTCCGGTATTGCTCATTCTCGACAACATCAAACTCGAAGCAAAACTATGGGTCACAGCATGAGCA
AAGAAGCTTACCATACCGGGAGAGTAATCCCTTTGTAGCGTCGAGCATGTAATAGCAACTCAACTCTCTTTTTATTTAAC
TTCTCGCAAAAAAAAAACTCTCTTTTTATTTAAGTGGTAATATCACCGCGAGTCATAGAATTTGCGCTCGATGTTCTGTT
TGATGCTAAAACTTTGAAAATACGAATTTGTGGTCATTCAACTTGCGTTCTAGTG----------------------CAA
ATACGGTCACTTCGCCCGTATTCAAATGAATCATGCGCTTCTGTGGCATGCCAGCATGTCTACGACCTATTGTCAGTGAC
TGGAACAGATCGGGCAACGTGTTTTTTTTTTGCAGAAGCACTGGTCATTCTATATTTAATTAAGCAAAAGCTGATCAATA
ACATGTTTGGGTTCCACTTGTCAGCATAAGGCGGTCAGAGAAATGAGAATAAAAAAAGTGCGCAAGGATTCAAACTCCTA
AGCTCATATACACGCATGCGCTAGCCAACCACTGCACCAACTACAGATTCATGCCTATAGAGATATACACTTGGTTATAT
ATTTGACGTAGGTTTTTTCTAGATTCCATTTTTTCCCGGGTCCTGCAGAAAATCATTTTTCGAAAAATATAGCCTTTTTG
CGCCAATTTTTTTCAAATGAAATCCAAATAAAAGATCACGTCAAAATGTATAATGTTCAACCCATAAAAATGTATGAAAC
TTTTCTACGAGCAAGATTATTTTAATTCCCTTTTCTTCTCGAAGGGACCGGAAAATTCGGGTTTCAAACTATCTTGGCAA
TTCCAGTTTTTTCGCCCAAAATTTTGAAACAAATTTTGAATTCAAATATTTTCAATGTCTAAATATATTTATTTTAGCAA
ACAATTTAAGTAAGTGCTTCCTATTACAGTGCTCCGCTCGACTACTCTCTTATAGAAGATTGCAAGTTCAATTCATTGTT
GCAGCACCAAGACCATTTTTTCTAAATGAGCATGAACAACTTATAAATATATAGTATTTCACAATACAGGAATAGAACCA
TAGACCCTACCACTAAGCTAACTGCGTGGTTCTGATATTGTATGCGGACGAAAGATATTATCTTTGACATAGTTTCTATC
ATTTAAATTCAAAAAAATTGGGCGATCACAAACTTTCAGGGGGACCACCAAAATTTTAGGTGACCGACTGGTTATCCGAA
TTTCGGTCCGGCAAAAAAAAAAAACTGAATACGAGTAGTTGTCGTGGCCAAAATATAAAATTCAGTGTTTCTCTATACAG
AGATAGTACTTGGTGTAATGGTTAGCGCCTGCTGTTCCAATCCTGAGGTTGAGATGAGAGGTCGATTCTATTTGCACCCT
TTTTTTTCTGCAAAATTATCTGTACGCCCGATGGTTAACCCGTTGTTAATATCTCACTGACTAGTGTCCTACCCCTAAAT
TACCCTGGTAGACATGTGGGCCTGGACAAACTTCAGTGTAAATAAATAAACAAATTTTAGTTGTATATTTCAGCGTCAAC
TAGCACTAATGGGACCGGTGTACGTTTGAGTGTTTAATTTGCAGGTCGTGGGTTCAAACCCCACCTGCCTAACCCCCTTT
TTTCGTTACATTTGATATCTTTTGTGCATAGTTAAATAAATTGCGAGGGTGTTTTCTGCAAAAAAAATGTGCAAGGGTCA
CCCAACGTCTTGTGCACTCCCAACCACTGACAAGTGGACCTTCGCCAGCCTGCACGCCATGTGGGCATGCCATACGGCTG
GGTACGAGAGGAAGTACCGTATTTGCACAAGAATGCAAGTTGGATGATCGTAAATCCGTATTTTCGAAGTTTTAGCACCA
AACTAAACATCAATCGTAAGTTTTATGACTACCGATGATATTACCTCTTTATTTAATGGATGAGGCAAGTCTTTTACTTC
CATTTCAAAAAAAAAAACAGCGCATACTTTTTGTAATCACAACATGCTTCGATCACCATCCACTTGCTCTCCGACTTGGC
CGGGTGAGGCTCCGCGCTCGGGAACGAGGCCAACACCTTCCTCGACATCGCCGCGCAGAACGCCGTCACCGTCATGCTCA
AGTTCGTGCCGCTGCTCGGCAAGAGCGGCAGCGAGATGGACGATGGCGCGGCCGCGGACATGTGAGCCAGCAGCCACTTG
TCCATGCATGAATAATCAGATGCCCGTGCGTGCTGTATCGT
>chr3A_139
TCCTGAAAT-----------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------AATCCAGGAATAATGCAAGCATCAGGACTTAAACCCTGATGGACCG
GGGATACCACTGTTCCTCTAACCATCCAATCATAAGTGGGTTCACCACTTCTTAGAAACATTGATGCCTAATCAAACACT
CTTT---CATAAAATAAAGCACTAAGGCTATTCCGTCTAGCAAAAAAAAAAA-TGACTCATTTTGCTGAGCGCTTATCCA
ACCACTTGAACTGTACATGGTCTAAAATGCTCTATGAGAGATTTTATACGATGCGAGTTGTGTTAATATAAGTTGTGGTT
ATTATACGCAGATGGCATACACCTCCGATGCATGGTTCCTTGACCAC-AACAGCATCTCTAAGCGATCGATCTCCACCAA
CTTAATCTCGGGATCTGCAATTTTTTGGCATTTGTTAGTTGACATTTTTAGTACCAGCCAGCTATAGAT---ATACGTGA
AAAATTGTGCAACGCATCGTTCGGATCCCGTTCATTAATTTGATGTACTCCGTAGCCACTCC-CCCCACAGCTCCAACCC
TAGGTACCCAACTTGCTATATATACGCGCACCAGCTCTACACAGGGACGCTCAGACTCCAACCACAGGCACAGCACACAA
AACAAGTCTTGTGGTATAGAGAAACGGAGCTAGGGAAGCTAGCTAGCTCGACCATGGGTGGTGTTCGGCAGCAGCTCATG
GCCGCCGTCCTCGTGGCGGTGGCGCTGATGGCCACGGCGGCGGAGGGGTACATCACTCAGAAGACATGGGGCGCCATCCG
CCGGGCGAACCGCGCCGGGCCGTTCGTCGGCCTCGTCGTGCCCAACACATACGAGAT-----------------------
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>chr3A_939
--------------------------------------------------------------------------------
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----------------------------------------------ACATACGAGATGGTCCCCGTGCTCGAGTCGCCCA
GCTTCGTGGCCAGCAAGAGCATCCCTAACATGGACATCCAAGGTAAAGATGCTCCTACTCAAATGGTACA---TTCAGTC
TAATCAGATCAAGCGTGTATACGGGCGCCATGTGCGGAAATAACTTGACATGAAAGGGCACTATTAACATTACGTGATGG
ATGATCTTTCCGTAAGCTTGAAATGTCAACACTTTGGTTGGGTCAAAGAAATAAACGTAATA---TGAAACAAGCCTGTT
CGTAATATCAT------------AACATCAGAACGAATATGGTTGAATTGATTAACAAGCCTGCTCATATATGAGAACCG
TCTGAATTATGTACTGTAGTGAATTTGAATGGTAGACGAAAGAAGTGACCGGACGTGCTGAAACACTTACGCATGACCTG
AAAGCACATGATGATGGAACGCGGGTGAGACCGGGCGTTTCATGGAGGACTTGCATGAAAGCACATGAGATGCATGTGCC
TATTGACGGAGCTAACCAGGCACACATGAGCAAGCAGAGTGAACGTTTGTACGATCGAAGTGAAAAATAATACTTCCATC
TAAACGCTCTTACATTTCTTTACAGAGGAAATAGAAGTTAAAATCGGTCGTAACTACACCA--TATGTCGTTGATAATTA
AAAAAAGATAAT--------------------------------------------------------------------
----------------------------------------------------------TAAATACTAACATTATCGCATG
ATTTTTGCTTGAAGGGCGAAGGTTTCGCTTCGGAACCATCGAAGGCCAAAGCGTCGTCATCGTCATGACTGGACTGAGCA
TGGTAAGACCGTACATACTACAGCATTATATTTTGTGTAGCAGTGTATCTTACAAATACTCAGAACTTAACGAACTGTTG
CACCATGGAATGGAATCAATGACTGCAGCTCAACGCTGGTCTGACCACCCAGATGCTGCTGAGCCTGTTCCGGGTGAAGG
GCATCGTCCACTGGGGCATCGCTGGCAACGCCAACGAGGACCTCCAGATCGGCGACGTCACCATCCCCGAATACTGGGCC
CACGTTTCCCTCTGGAACTGGCAGGTAGTACAAATTTGGTATTAGAAAACGTGAACATGTCATGGTCGTCCAGGATTTTG
ATTTGTGGTGCTACCAAAATTTTGTCGA-TTGGGCGGCCAGCGGTTCGGCGACGGCAAGGATAACGAGCTACCGCTGGAG
GCCGCCGGCGACTACACCCGGGAGTACGGCTTCCTCAACTTCTCCGACTACACCGTGGGGCAGAGCAACCCGGCGCTATC
CGCCAACCAGCTCAACAGCATCTGGTACCAGCCGGAGGAGATCTTCCCCAAGTCCGGCGAGCCCGAGGAGCGGCAGCACG
CGTTCTGGGTGCCCGCCAGCAAGCGGTACTACGCGCTGGCGGCGAAACTGGAGGGCATGGAGCTGCCGGCGTGCGTGAAC
GCGACGACGTGCCTGCCCCGCGCGCCGCGGGTCACCCGGGTCAGCAAGGGCTGCAGCGCCAACGTGTTCCTGGACAACGC
CGAGTACCGCCAGTTCCTCCGCAAGCAGTTCGAGTGCACCCCCGTGGAGATGGAGAGCGCCGCCGTGGCCCTCGTGGCGC
ACACGCAGGGGGTGCCGTTCCTCACCATCCGCTCGCTCTCCTACCTGGCCGGGGGAGGCTCCGCGCTCGGGAACGAGGCC
AGCACCTTCATCGACATCGCCGCCAAGAACGCCGTCGAAGTCATGCTCAAGTTCGTGCCGCTGCTCGGGAAGGGCGGCGA
CGAGATGGAGGACGGCGCGGCCGCGGACATGTGAGCCAGCAGCCGCTTGTCCATGCATGAATAATCGGATGCCCGTGCGT
GGTGTA---TCGTCTCGCTTTCCCTTTTTCCTTTTTTTCTTGCGCCGCGCTATCGATAAGGCCTGCGAGCCCTAGCTC--
---------AA----CAGTTGGTGAGCCCACGACCACGACGAGTTGCAGAGATGAATA--AATAAATCAAATAGTCGGCC
-TAATGCCGTTTGTCCGGATTCCCAATAGTGTGCAATTTAACCAAACGCACTCAATTGAATCACGCCACCGATGTACGTA
TGTGCTTACATCTACGTGATGC-AGTACAATGTTAGTACTCTCACCGTTTCTTTTCACTTGGCA----------------
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>SNPs
----------S-SS----S------------------S-SS----S--S--S----S-----------S--SSSSSS---
-------------------------S--S------S----------S-------------S-S-----------------
-----------------------------------------S--------------------------------------
----------S---------------------------------------------------------------------
--------------S------------------------------------SS---------------------------
-S------------------------------------------------------------------------------
---------------S-------------------------------S-------------S------------------
-------------------S-S------------------------S---------------------------------
--------------------------------------------------------------S-----------------
----------S-------------S-------------S------S-------S-------S--SSSS--SSS-------
-------------------------------S------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------S----------------
--------------------S--------------------------SSSSSSS-SS-SS-S-SS---SSSSS-------
----------------S------SS--S-S------S---S---------------------------------------
-------------------------------S------------------------------------------------
----------S-------------------------S-------------------------------------------
-------------S------------------------------------------------------------------
-------S-----------------S------------------------------------------------------
------------------------------------------------------------------------SSSSSS--
-----------------------------------------------------------------------------S--
SSSSS---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S-----S----------
--------------------------------------------------------------------------------
-----------------------------------------------------------------S--------------
----------------------------------------------------------S---------------------
----S---------------------------------------------------------------------------
--------------------------------S-----------S--------S-------------S------------
-------------------S-------SS----S--S-------------------------------------------
-------------------------------------------------------------------------S------
---S-----S--------------------------S-----------SSS-----------------------------
--------------------------------------------------------------------------------
--------------------------------S-----------------------------------------------
---------------------------------------S--S--------------------------------S----
-------------------------------------------------------------------S------------
--------------------------------------------------------------------------------
-------------------------------------------------S-------------------S----------
--S---SSS----S---------S----S--------S-----S------S---S-------------SSSSSS-SS-SS
SSSSSSSSS-----S-------S-----------------------------------SS--------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------S---S-SSSS-SSS
SSSSSSSS-SSSS-S-SSSS-SSSSSSSSS-SS-SS-SS--SSSS--S-SS-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------S-S-SS-SS--S-S
-SS----S-S--------SSSS-SSS-SS-SSSSSS--SS-SSSSSS-S-SS-SS----SSSSSSSSSS-----------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------------S-S-----S-----SSS-SSSSSSSSSSS-SSSSSS-S-S-SSSSSSSSSSSSSSSS-SSS-S
SSS--S-SSSSS-SS---SS--SS-SSSSSSSSS---SS---S-SSSS-S-SS--SSSSSSSSSSSSSSSSSSSSSS---
--S--S---SSSSS--SS------S--S--SS-S--S-SS-SS----SSSS--SS-S-S-SSSSS--SS-S-SSS-S-S-
SSS-SS-SSSSS-SSSSSSS-SSSSS-SSSS--SSSSS--SSSSSSSS-S-SSSSS-SS-SS-S-SSSSSS-SSSSSS-S
-SSS-SSS-SSS-SSSSSSSSS-SSSSSSSSSS-SSSS-SSSS-S-SS-SSSS-S-SSSSSSS-SSSSSSSSSSSSSSSS
--------------------------------------------------------------------------------
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---S-S----------SS-SS---SSSS----------------------------------------------------
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----S-S---------S-S--SSSSSSS--SSSSSS-SSSSSSS-SSS-S----SSSSSS--------------------
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---------------S---S-S-SSSSSSSS-SSSS-SSSS----SSSSS--SSSSS-S-S-S-SSSSSSSSSSSSSSSS
SS-SSSSS------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------
>forward_143
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-------------------------------------------ACCATAGGCACCTCGTCCTA-----------------
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-----------------------------------------
>reverse_1145
--------------------------------------------------------------------------------
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------------------------ACGTCCTGTGCGAAAACAAC------------------------------------
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-----------------------------------------
>forward_786
--------------------------------------------------------------------------------
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----------------------------------------------ACGCTCACACTCCAATCAGC--------------
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>reverse_2394
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-------------------------------------------------------------------------AGCTATC
CGCGAACCATCTC-------------------------------------------------------------------
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>forward_2228
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------------------------------------------------ACGTGCACATGTCATGGTCT------------
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>reverse_4044
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-------------------------------------------ATGCATCCCCCTTTGTGGAG-----------------
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-----------------------------------------
