>input_sequence_43269
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----------------------------------------------------GTATATACGATCCGGTCCATTACCCCGC
GCGAGGGCGCCCGAGAGAGCGGCGATCCGAGGGGGGCGGTGGTCTGGTCC------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------GTGGATGGTCGTCGT
CGTCGTCGTTTGGCCGGACCGTGTCGATGGAGTTCTGGCCCGAGTTCTTGGCGAGCAGCGGCGGGCATGAGTTCGTGGCG
GGGGGCGTCGGCGGCATGGCCGGCGTGCTGGCGGGCCACCCACTGGACACGCTCCGCATCCGCCTGCAGCAGCCGCCGCG
GCCCGTGAGCCCCGGGATCACCGCCGCGCGGGTGGTGCGCCCGCCCTCCGCCGTCGCGCTACTGCGCGGCATCCTCCGCG
CCGAGGGCCCCTCCGCGCTCTACCGCGGCATGGCCGCGCCCCTCGCCTCCGTCGCCTTCCAGGTGAGCCAGACAGTTTTA
GGAACGTAAAATGTTTCACGCAATTA----GGCCGGCCGGCGTGTGGAGTCCATGAGATCGTGAGTTCTTTGGCCACGTC
TTCCTTTTTCCAATTATAAAGTTTGCTTTAGGTATCGTTTTCGCGAAGAAAGTTTGTTCAAACAGA---------TACAC
GACACGAAAATCTATGACACGACTAAGTAAATGAGTTAGCCATTG-----------------------------TAGGAC
GGCGTCACTTTACAAAAAAAA---AAAAGATCA-------------TTGCTTGTCGCATTTGAACT--------------
------------------------TGTATCGTTGCGTCGCGCTCATTCCGGTGGTTCACATGGCGTGGCGGCCTTTCTGG
TCTGTGAAGTTGTGGTCGACAATAAATGCTGTAACGTACGACGATGAACACGTTTCATGTTTGCTCGTGA--TTAGGCTT
GCGTCGCAACGTACGATGCTGCATAACAATTTTTTTTTCGGGAAGATGCTGCCTAACATTGGCCATTTGGCCAA------
---------------------------TGACATTTGCAAGCCTGCACTTGAACACATA----------------------
--------------------------------------------------------------------------------
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-------------------------ACAGTGCCTGTG-CTGTATTTGCGGTAGAAAACTAGAAATCATGTCAGAAACTGA
GTTCAAAATTTTATGTCGCAGAATGCAATGGTCTTCCAAGTCTACGCGATCCTCTCGCGGTCGCTGGATCGACGGATGTC
CACCTCCGAGCCCCCCTCCTACACAAGCGTGGCACTCGCCGGCGTGGGCACGGGAGCGCTGCAGACGCTGATCCTGTCCC
CCGTGGAGCTCGTCAAGATCAGGCTGCAGCTGGAGGCGGCGGGGCGGAAGCGCCAGGGGCCGGTGGACATGGCCCGGGAC
ATCATGCGGAGGGAGGGCCTGCGCGGCATATACCGCGGGCTCACGGTCACCGCGCTCCGGGACGCGCCGTCGCACGGCGT
CTACTTCTGGACGTACGAGTACGCGCGGGAGCGGCTGCACCCGGGCTGCCGGAGCACGGGGCAGGAGAGCCTCGCCACCA
TGCTCGTGTCCGGCGGCCTCGCGGGCGTCGCCAGCTGGGTCTGCTGCTACCCGCTGGACGTGGTGAAGTCGAGGCTGCAG
GCGCAGACGCAGACGCACCCGCCCTCGCCGAGGTACCGCGGCGTCGTCGACTGCTTCCGGAAGAGCGTGAGGGAGGAGGG
GCTCCCGGTGCTGTGGCGCGGCCTCGGCACGGCCGTGGCGCGGGCTTTCGTCGTCAACGGCGCCATCTTCTCGGCCTACG
AGCTGGCCCTGCGCTTCTTGGTGCGCAACAACGGCCGCCAGACGCTGGTGATGGAGGAGATGAAGTGCCATGATCACTGA
TGCCAATGTGAATCCATCCGTTTGCAGCAATGGAGTTGCCCACAGCGGCATGCGCACGTCCGCGGGGTTGTACATAGGCT
AGTAATCCATGGGACTGGGAATCCGTCATGGAGATCATACCATTTACA--------------------------------
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------------------------------------------------------------------
>chr3A_1_TraesCS3A01G149900
AACCCAAGACCCTTCTTTGTTATTTAATGTTGTTCAATACTATCAACAAAATGCAAACATGAAGTACTCCCTCCG-TTCC
ATAATTTTTTGTTGTGC-TTTAGTTCGAATCATGGAACGAAGGGAGTAGAATGAAACAAAAAGCAGGCTACATTCTAAAT
GGGCGTGCTACACTGGCACGTCATGGGGCAAATACGACG-----GTT-----CTGCCCCATACGCAAGCCTCGGCAAATA
CTCCACTCCACTTCCAGGCAGAATTGACAAATTTGACCTTGAAGTGAAAGTATTTCACAAACTAAATTATTTTTGAAAAT
ATTTCACATCACTTTTTGTGCAGCTCCCAACAGTAAGGCGCTGCACTCTACTGTGCAACTCCTTACAGTTAGGCGCTGCA
CAGTGTAGTGCAGCTCCTTACAGCTAGGCGTTGCACAGTATGGCGCATGTGGGTTAGGCGCTGCACGATAAGAGTGTAAC
GCTTTGCTGTTGGGCGCTGCACATTAGAGGTCAGCTGGATGAAATACTTTCAAACATAGTTTAGTTTGTGAAATAGTTTC
GTCCTGAAGTCAAATTTATGTTTTTTGCCCCACTTCCACTACACTAGGCAAAGCATAGCAGAGCAGAGCAGCAACGTATT
CAGGTTGGGACGGACGCTCGGGAACAGAGCGCTTGTCCGTTTCCATGGCGCTCACTCCCCGTGCCCACAAATACCGCCAC
CCGCCATCCCTCTCCCAGTACGTGTCCTCACTTCTCTTCTCGCTCTTCTTCTTCTCCTCCTCCTCCCGCCGTGCCATTGC
CGCCCGTGCCCTACCAATCCACCCACGCGGAAAGCGTTCGCTTCCTCCACCGCCGCACGCGCCGCTCGTCAGGCCGGCCG
TCCGTTTTCCTCGGTTCCTCCCCTGCTCTCCGAAGAGTCCGTGCGGATAGAGAGTCCTTTTCCGCATTTGGAATCGGCAC
CAAAAGGGAAGCGGGAGATCCGGGTGCTTTTCTTGGCCGGCCGATCCTGCCGGTATATACGATCCGGTCCATTACCCCGC
GCGAGGGCGCCCGAGAGAGCGGCGATCCGAGGGGGGCGGTGGTCTGGTCC------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------GTGGATGGTCGTCGT
CGTCGTCGTTTGGCCGGACCGTGTCGATGGAGTTCTGGCCCGAGTTCTTGGCGAGCAGCGGCGGGCATGAGTTCGTGGCG
GGGGGCGTCGGCGGCATGGCCGGCGTGCTGGCGGGCCACCCACTGGACACGCTCCGCATCCGCCTGCAGCAGCCGCCGCG
GCCCGTGAGCCCCGGGATCACCGCCGCGCGGGTGGTGCGCCCGCCCTCCGCCGTCGCGCTACTGCGCGGCATCCTCCGCG
CCGAGGGCCCCTCCGCGCTCTACCGCGGCATGGCCGCGCCCCTCGCCTCCGTCGCCTTCCAGGTGAGCCAGACAGTTTTA
GGAACGTAAAATGTTTCACGCAATTA----GGCCGGCCGGCGTGTGGAGTCCATGAGATCGTGAGTTCTTTGGCCACGTC
TTCCTTTTTCCAATTATAAAGTTTGCTTTAGGTATCGTTTTCGCGAAGAAAGTTTGTTCAAACAGA---------TACAC
GACACGAAAATCTATGACACGACTAAGTAAATGAGTTAGCCATTG-----------------------------TAGGAC
GGCGTCACTTTACAAAAAAAA---AAAAGATCA-------------TTGCTTGTCGCATTTGAACT--------------
------------------------TGTATCGTTGCGTCGCGCTCATTCCGGTGGTTCACATGGCGTGGCGGCCTTTCTGG
TCTGTGAAGTTGTGGTCGACAATAAATGCTGTAACGTACGACGATGAACACGTTTCATGTTTGCTCGTGA--TTAGGCTT
GCGTCGCAACGTACGATGCTGCATAACAATTTTTTTTTCGGGAAGATGCTGCCTAACATTGGCCATTTGGCCAA------
---------------------------TGACATTTGCAAGCCTGCACTTGAACACATA----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------ACAGTGCCTGTG-CTGTATTTGCGGTAGAAAACTAGAAATCATGTCAGAAACTGA
GTTCAAAATTTTATGTCGCAGAATGCAATGGTCTTCCAAGTCTACGCGATCCTCTCGCGGTCGCTGGATCGACGGATGTC
CACCTCCGAGCCCCCCTCCTACACAAGCGTGGCACTCGCCGGCGTGGGCACGGGAGCGCTGCAGACGCTGATCCTGTCCC
CCGTGGAGCTCGTCAAGATCAGGCTGCAGCTGGAGGCGGCGGGGCGGAAGCGCCAGGGGCCGGTGGACATGGCCCGGGAC
ATCATGCGGAGGGAGGGCCTGCGCGGCATATACCGCGGGCTCACGGTCACCGCGCTCCGGGACGCGCCGTCGCACGGCGT
CTACTTCTGGACGTACGAGTACGCGCGGGAGCGGCTGCACCCGGGCTGCCGGAGCACGGGGCAGGAGAGCCTCGCCACCA
TGCTCGTGTCCGGCGGCCTCGCGGGCGTCGCCAGCTGGGTCTGCTGCTACCCGCTGGACGTGGTGAAGTCGAGGCTGCAG
GCGCAGACGCAGACGCACCCGCCCTCGCCGAGGTACCGCGGCGTCGTCGACTGCTTCCGGAAGAGCGTGAGGGAGGAGGG
GCTCCCGGTGCTGTGGCGCGGCCTCGGCACGGCCGTGGCGCGGGCTTTCGTCGTCAACGGCGCCATCTTCTCGGCCTACG
AGCTGGCCCTGCGCTTCTTGGTGCGCAACAACGGCCGCCAGACGCTGGTGATGGAGGAGATGAAGTGCCATGATCACTGA
TGCCAATGTGAATCCATCCGTTTGCAGCAATGGAGTTGCCCACAGCGGCATGCGCACGTCCGCGGGGTTGTACATAGGCT
AGTAATCCATGGGACTGGGAATCCGTCATGGAGATCATACCATTTACAACAAAGGTGTGGTTTTCAGAGCGTAGTAGCAG
--TTAGTTGCTTCAGAATTCACAGAACTTGGCACTATAGATGTGCTTGTTGACGACGACGATCAATTCTCCAATGTCTGG
GGAGATGCTATTACATGTATAGTAGTACAAGAAAATCAATCAATGAAGATCATGAGTCAATGACCAGGTGTGGGACCAAT
GAACTGCGATCAGAATTCTTGTCTGACGGGAGATAATGTC----------------------------------------
------TGCATGCTTTGCTCACGTTGCATGGATGGCTCCAGAGTCGTGAATTCCCTTGTAAACACGAGCGCGACAGTGCA
AGTGATGCATGGAAATGCAGATTTTTGCTGGTAGCTCTCAGTGGCAAGTTTTCACAGCAAGAGGGCAAAAACGGACTAGC
TTTC--TACGGAGCACTTGTGGACGATACAGAATTGCCATTTGTGTGGAATCCTGCGCCACTACTTGCGGTAGATTCCGT
GCGTTTACCACAGCCAGACAGGTGTAGATTCCGATTCCAGATGGGTTCACGCTGATTTGAGTTTGAGGTCCCGGTCTCCC
GGATCCCTG----GGAGAGGAGAACCCCGGGTATAGAACGACGCAGTTAAGTAAAACACTC-------------------
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-------------------AAAAGTTGTGTGGAGAGGAAGAGACA--GGGACAGAGAAGGAGAAAGGGGAATTCAGACTT
TAGTA--------------------------------------------TTTCGTTCACTGTTGAAACACCCGACACCAC
TGGGTCATATAGCGCGTGTGTGCCTCCTCCTGCTACGGCGACCTGCAAATTTGCTCCGGGATATATCCGCGGACAGAGGA
TCAGTTCGTGGACGCTGATTTCAAACACTCTTTTAACAAACCGAATGAAATTCATGCAAACACAACAGATATCATACTAA
CCGAACAAAACGTTTATATTTTAGACATATCTTTATTTTTACCTAATAATAAAGCAAATTGGGTTTCTTTCGTCCGTCAT
GACATTTTTCAGAAAAGTCTCTCTATTTCAGAGAATTTAACCTGGAGTCCTGTTTTAAGTTAAAAC
>chr3D_25
TAATGTTGC------------------------TCAATACTATCAACAAAATGCAAACATGAAGTACTCCCTCCGCTTCC
ATAATTTTTTGTTGTGCCTTTAGTTCGAATTATGGAGCGAAGGGACTAGGG---AACAAAAAGCAGGCTACATTCTAAAT
GGGCGTGATACACTGGCACGTCATGGGGCAAATACGACG-----GCCTGCGCCTGCCCCATACGCAAGCCTCGGCAAATA
CTCCACTCCGCTTC------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------CACTACACTAGGCTAGCAA-AGCAGAGC-----AGCAACGTATT
CAGGTTGGGACGGACGCTCGGGAACAGAGCGCTTGTCCGTTTCCTTCGCGCTCACTCCCCGTGCCCACAAATACCGCCAC
CCGCCATCTCTCTCCCAGTACATGTCCTCACTTCTCTTCTCGCTCTTCT------CCTCCTCCTCCCGCGGTGCCATTGC
CGCCCGTGCCCTACCAACCCACCCACGCGGAAAGCATTCGCTTCACCCACCGCCGCACGCGCCGCGCGTCAGGCCGGCCG
TCCGTGTTCCTCGGCTCCGCCCCTGCTCTCCAACGAGTCCGTGCGGATAGAGAGCCCTTTTCCGCTTTTGGAATCGGCAC
CAAAAGGGAAGCGGGAGATCCGGGTGCTTTTCTTGGCCGGCCGATCCTGCTGGTATATACGATCCGGTCCATTCCCCCGC
GCGAGGGCGCCCGAGAGAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGGATGGTCGTCGT
CGTCGTCGTTTGGCCGGACCGTGTCGATGGAGTTCTGGCCCGAGTTCTTGGCGAGCAGCGGCGGGCATGAGTTCGTGGCG
GGAGGCGTCGGCGGCATGGCCGGCGTGCTGGCGGGCCACCCGCTGGACACGCTCCGCATCCGCCTGCAGCAGCCGCCGCG
GCCCGTGAGCCCCGGGATCACCGTCGCGCGGGTGGCGCGCCCGCCTTCCGCCGTCGCGCTGCTGCGCGGCATCCTCCGCG
CCGAGGGCCCCGGCGCGCTCTACCGCGGCATGGGCGCGCCACTCGCCTCCGTCGCCTTCCAGGTGAGCCAGCCAGGTTTA
GGAACGTAAAATGTTTCACGCAATCA----GGCCGCCCGGCGTGTGGAGTCCATGAGATCGTGAGTTCTTTGGTCACGTC
TTCCTTTTTCCAAAAGTTTGCAAA--------TATCGTTTTCGAGAAGAAAGT--GTTCAAACAGATGGTACTACTACAC
GACATGAACATCTATGACACGACTAAGTAAATGAGCTAGTT-TTTTTAGGATAGTAAATGAGCTAGCTATCATATAGGAC
GGCGTCACTTTACGTGCTACTACGAAAAGATCATTTGTTTCTCCTCTTGCTTGGCGCATTTGAAGTCTTGTAGTTTTGCA
TCCTCCGCCTTTGCTTCCTTTCCCTGTATCGTTGCGTCGCGCTCATTCCGGTGGTTCACATGGCGTGGCGGCCTTTCTGG
TCTGTGAAGTTGTGCTCGACAATAAATGCTGTAAAGTACGATGATGCACATGTTTCATGTTTGCTCGTGAGATTAGGCTT
GCGTCGGAACGTACT------------------------------ATGCTGCCTAACATTGGCCATTTGGCCAA------
---------------------------CGACATTTGCAAGTCTGCACTCCG-----TA----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------ACAGTGCGTGTG-CTGTATTTGCAGTAGA---------ATCATGTCAGAAACTGA
GCTCAGAATTTTATGTCGCAGAATGCAATGGTCTTCCAAGTCTACGCGATCCTCTCGCGGTCGCTGGATCGACGGATGTC
CACCTCCGAGCCGCCCTCCTACACAAGCGTGGCACTCGCCGGCGTGGGCACCGGGGCGCTGCAGACGCTGATCCTGTCCC
CCGTGGAGCTCGTCAAGATCAGGCTGCAGCTGGAGGCGGCGGGGCGGAAGCGCCAGGGGCCGGTGGACATGGTCCGGGAC
ATCATGCGGAGGGAGGGCCTGCGCGGCATATACCGCGGGCTCACGGTCACCGCGCTCCGGGACGCGCCGTCGCACGGCGT
CTACTTCTGGACGTACGAGTACGCGCGGGAGCGGCTGCACCCGGGCTGCCGGAGCACGGGGCAAGAGAGCCTCGCGACCA
TGCTCGTGTCCGGCGGCCTAGCCGGGGTCGCCAGCTGGGTCTGCTGCTACCCGCTGGACGTGGTGAAGTCGCGGCTGCAG
GCGCAGACGCAGACGCACCCGCCGTCGCCGAGGTACCGCGGCGTCGTCGACTGCTTCCGGAAGAGCGTGAGGGAGGAGGG
GCTCCCGGTGCTGTGGCGCGGCCTCGGCACGGCCGTGGCGCGGGCGTTCGTCGTCAACGGCGCCATCTTCTCGGCCTACG
AGCTGGCCCTGCGATTCTTGGTGCGCAACAACGGTCGCCAGACGCTGGTAATGGAGGAGATGAAGTGCCATGATCACTGA
TGCGAATGCGATTCCATCCGTTCGCAGCAATGGAGTTGCCCGCAGCGGCATGCGCACGTCCGCGGGGTTGTACATAGGAT
TATAATCCATGGGACTGGGAATCGGTCGTGGAGATCATACCATTTGC-----AGGTGTGGTTTTCAGAGCGTAGTAGCAG
--TTAGTTGCTTCAGAATTCACAGAAATTGGCACTATAGGTGTGCTTGTTGACGACGACGATCAATTCTCCAATGTCTGG
GGAGAAGCTATTACATGTATAGTACAA----GAA---AATCAATGGAGATCATGAGTCAATGACCAGGTGTGGGACCAAT
GAACTGCGATCAGAATTCTTGTCTGACGGGAGATTGTGTTCTCAGCCATGGG----------------------------
ATCCCATGTATGCTTTGCTCACGTTGCGTGGATGGCTCCAGAGTCATGAATTCCCTCGTAAGCACGAGCGCGACGGTGCA
AGTGATGCATGGAAATGCAGATTTTTCCTGGTAGCTCTCAGTGGCAAGTTTTCACAGGAAGAGGGCAAAAACGGATTAGC
TTTC--TACGGAGCACTTGTGGACGATACAGAATTGCCATTTCTGTGGAATCCTGCGCCACTACTTGCGGTAGATACCGT
GTGTTTACCACAGCCAAACAGGTGT-GATTCCAATTCCAGATGGGATCACGCTGATTTGATGTTGAGGTCCCCGTCTCCC
GGATCCCTTCCTAGGAGAGGGGAGCCCCACGTATAGAACGACGCAGTTAAGTAAAACACTCAGGGCGTGTTTGGTTAGTT
TCTCCACCGGCCTGACTAGGAGAGCAAAAATGAGCCAGGAGCAGGGCATGGATAAGAAAAAACAGGGTCAAAAAGTAGAT
GACTAGTTGATTGGTTGCCTGCATTAGGGGTTTTGTCATCGGGATGCAATTTTCACCCGGCATTTGGTTGCATACATGCA
TATGATTAGGAGTTAACAACAAAGCTTAACACCCACCAGGTTTGGCATCTCATTTCGTCGAACACGTTGAGCGCGCCGGA
GGTTCCTCTGCCCATCATGTCCACCGCCAGCTCCCGGCGACCATGGGCACGCTCGCCACCTGGACTCGTCCACGCACGGC
ACCGTGGCCGCGCCCGGCTCGTGGCCGTGGACGCGCCCAGCTCCGGCGGCAGCCGCCCCGTGATGTTGTTCTGCAGCAGC
CTGAAGCCCCGTACACTTCAGAGTTCATAGAGCACACAAGCAAGCAAGAAGACTAAGAAGTAGCAGCCTGAAGCCCCGTG
CACTTCAGAGTTCAGAGAACACACAAGTAAGCAAGAAGACCAAGAAGCAGCAGCCGCGCCGGACGCTCGCCCATGAGCTC
CAGCCGCTCCAGGTCGCGGTGTCGTGCTTTCCCTAATCATTTGATGGATGTGGAGGAGTGTGCGAGAGAATTGGGTAGAT
CATGGCCAGGTCGCGGTGCCACATGAGCGTGGAGGAGTCCACGGGCTCCAGCCGCTCCAGGTCGCGGTGCTCGTCCACGA
GTGCACGCGTCGGTCCGGCTTCAGCTTCAGCGTCAGCAGGAGGTGCGCGCGCACCAGCTCCGACCGCGTTGTCCGCTGTT
TCGCCCGGGACCCCCGTCCGGGCCGCCCGCTGGAGCTCCGACAGGCCGGCCTGCTTGAGCGCTGCGGCCGTCGCAGTGAG
GCGGTCCCCGCAGACGGATCCGGTGAGGGCGAGTTCGGCGGAGGTCCGGCGATGGGATGCCCGCGCTTGCGCCGGCAGCG
GGCGGCGGGAAGCGCGACCGGGGCGGCGAGCGAAGTAGGCGAGGGTGTGCTCAGAGATGAGGTGCTCAGAGAGGAGAGGG
ATTAGGGAAGGTTAGGGAGGTGATTATCTGTCAACACGTACGAGCCGAGCCACCCAGGTACGCTCGAGAGCATCGCTCGG
GCCTGGCTCACAAGAAACTGCTGATTCGGACGTTTCCAGTGAGCCAGGCCCAGAGGTGCTTTAAGAACCGTGCTATGCAG
GCCCAACAGTATATGCGTGCAATCAAACAGCCCATCTCCATAAAGATGCTGCATCGCGCGGGCTTGGTTGGGCTCGATGT
GGCAACCAAACTCGCCCTCAAAAGTTGTGTGGAGAGGAAGGAGAT--------------------GGGGAATTCATACTT
CAGTA--------------------------------------------TTTCATTTACTGTTAAAACACCCGACACCAC
TGGGTCATATAGCGCGTGTGTGCCTCCTCCT-------------------------------------------------
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------------------------------------------------------------------
>chr3B_153
CTAAT---------------------------------------------------------------------------
-------------------------------------------------------------------------------T
GGGCGTGATACACTGGCACGTCATGGGGCAAATACGACGGTTCGGCCTGCGCCCGCCCCATACGCAAGCCTCGGCAAATA
CTCCACTCCACTTC------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
------------------------------------CACTGCACTAGGCAAGCAA-AGCAGAGCAGAGCAGCAACGTATT
CAGGTTGGGACGGACGCTCGGGAACAGAGTGCTTGTCCGTTTCCTTCGCGCTCACTCCCCGTGCCCACAAATACCGCCAC
CCGCCATCCCTCTCCCACTACATGTCCTCACTTCTCTTCCCGCTCTTCT------TCTCCTCCTCCCGCCGTGCCATTGC
CGCCCGTGCCCTACCAATTCACCCACGCGGAAAG--TTCCCTTCATCCACCGCCGCACACGCCGCGCGTCAGGCCGGCCG
TCCGTGTTCCTCGGTTCCGCCCCTGCTCTCCAACGAGTCCGTGCGGATAGAGAGTCCTTTTCCGCTTTTGGAATCGGCAC
CAAAAGGGAAGCGGGAGATCCGGGTGCTTTTCTTGGCCGGCCGATCCTGCCTGTATATACGATCGGGTCCATTCCCCCGC
GCGAGGGCGCCCGAGGGAGCGGCGATTCGAGGGGGGCGGTGGTCTGGTCC------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------GTGGATGGTCGTCAT
CGTCGTCGTTTGGCCGGACCGTGTCGATGGAGTTCTGGCCCGAGTTCTTGGCGAGCAGCGGCGGGCATGAGTTCGTGGCG
GGAGGCGTTGGCGGCATGGCCGGCGTGCTGGCGGGCCACCCGCTGGACACGCTCCGCATCCGCCTGCAGCAGCCGCCGCG
GCCCGTGAGCCCCGGGATCACCGCCGCGCGGGTGACGCGCCCGCCCTCCGCCGTCGCGCTGCTGCGCGGCATCCTCCGCG
CCGAGGGCCCCTCCGCGCTCTACCGCGGCATGGGCGCGCCCCTCGCCTCCGTCGCCTTCCAGGTGAGCCAGCCAGTTTTA
GGAACGTAAAACGTTTCACGCAATTAGGCCGGCCGGCCGGCGTGTGGAGTCCATGAGATCGTGAATTCTTTGGTCACGTC
TTCCTTTTTCCAAAAGTTTGCAAA--------TATCGTTTTCGAGAAGAAAGT--GTTCAAATAGATGGTACTACTACAC
GACGTGAACATCTATGACACGACTAAGTAAATGAGCTAGTTCTTTTTAGGATAGTAGATGAGCTAGCTATCATATAGGAC
GGCGTCACTTTGCGTG-TACTACGAAAAGATCATTTGTTTCTCCTCTTGCTTGGCGCATTTGAAGTCTTGTAGTTTTGCA
TCCTCCGCCTTTGCTTCCTTTACGTGTATCGTTGCGTCGCGCTCATTCCGGTGGTTCACATGGTGTGGCGGCT-------
-------------------------------TAGCGTACGGCCATGCACATGTTTCATGTTTACTCGTGA--TTAGGCCT
GTGTCGGAACGTACT------------------------------ATGCTGCCTAACACTGGCCATTTGGCCAACGGCAT
TTGTAAGTCTTCCGCAAAAAAAAAAAACGACATTTGCAAGTCTGCACTTGAACACACCGTAAGGCTGCGCTTGGAACGTC
GTTTCCCACCCGATTCCGCCTGTAAAATATGCGCATGTAAACAAAATGGGTGGATGGGTGGACCACGTGATTGGAACGTC
GTTTTAGGGGTGTAATTATTACGATGGTTTCTCCAAATCCACCGGTATTAGGCTGGTATGTGATACACGTCTCAGCCCAT
CCGATTTGTAAATACAACTGGCGGGGGTATTCTGTTGGAGACCGGTAAATTACAGGCGTAGAGATTTGCAGGCGTAAGAA
AAATCCGGCAATCCAATCGGGGCCTACAGTGCCCGTGCCTGTATTTGCAGTAGA---------ATCATGACAGAAACTGA
GCCGAAAATTTTATGTCGCAGAATGCAATGGTCTTCCAAGTGTACGCAATCCTCTCGCGGTCGCTGGATCGACGGATGTC
CACCTCCGAGCCTCCCTCCTACACAAGCGTGGCACTCGCCGGCGTGGGCACCGGGGCACTGCAGACGCTGATCCTGTCCC
CCGTGGAGCTCGTCAAGATCAGGCTGCAGCTGGAGGCGGCGGGGCGGAAGCGCCAGGGGCCGGTGGACATGGCCCGGGAC
ATCATGCGGAGGGAGGGCCTGCGCGGCATATACCGCGGGCTCACGGTCACCGCGCTCCGGGACGCGCCGTCGCACGGCGT
CTACTTCTGGACGTACGAGTACGCGCGGGAGCGGCTGCACCCGGGCTGCCGCCGCACAGGGCAAGAGAGCCTCGCCACGA
TGCTCGTGTCCGGTGGCCTCGCGGGGGTCGCCAGCTGGGTCTGCTGCTACCCGCTGGACGTGGTGAAGTCGCGGCTGCAG
GCGCAGACGCAGACGCACCCGCCGTCGCCGAGGTACCGCGGCGTCGTCGACTGCTTCCGGAAGAGCGTGAGGGAGGAGGG
GCTCCCGGTGCTGTGGCGCGGCCTCGGCACGGCCGTGGCGCGGGCGTTCGTCGTCAACGGCGCCATCTTCTCGGCCTACG
AGCTGGCCCTGCGCTTCTTGGTGCGCAACAACGGCCGCCAGACGCTGGTAATGGAGGAGATGAAGTGCCATGATCACTGA
TGCGAGTGCGAATCCATCCGTTTGCAGCAATGGAGTTGCCCGCAGCGGCATGCGCACGTCCGCGGGGCTGTACATAGGCT
AGTAATCCATGGGACTGGGAATCGGTCGTGGAGATCATACCATTTACAAC-AAGGTGTGGTTTTCAGAGCTTAGTAAAGT
TATTAGTAGCTTCAGAATTCACAGAAATTGGCGCTATAGGTGTGCTTGTTGACGACGACGATCAATTCTCCAATGTCTGG
GGAGATGCTATTACATGTATATATAGTACAGGAA---AATCAATGAAGACCATCAGTCAATGACCAGGTGTGGGACCAGT
GAACTGCGATCGCAATTCTTGTCTGACGGGAGATAATGTTCTGATACCAGCGTACCTGTTCTACTTGCTCAGCTAAGGGA
ATCCCATGTATGCTTTGCTCACGTTGCGTGGATGGCTCCAGACTCATGAATTCCGTCGTAAACACGAGCGCGACAGTGCA
AGTGATGCATGGAAATGCAGATTTTTCCTGGTAGCTCTCAGTGGCAAGTTTTCACAGGAAGAGGGCAAAAACGGATTAGC
TTTCTATACGGAGCACTTGTGGACGATACAGAATTGCCATTTCTGTGGAATCCTGCGCCACTACTTGCGGTAGATTCCGT
GCGTTTACCAGAGCCAAACAGGTGTAGATTCCGATTCCAGATGGGATCACGCTGATTTGA------GGTCCCGGTCTCCC
TGGTCCCTG----GGAGAGGAGAACCCCAGGTATAGAACGACGCAGTTAAGTAAAACACTCG------------------
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--------------------AAAGTTGTGCGGAGAGGAAGGAGACAGGGAACAGAGAAGGAGAAAGGGGAATTCAGACTT
CAGTATTTCGTTTTTTTTTTGTTTTTTTTTTTGCGGGTAGACTTCAGTATTTCGTTCACTGTTGAAACACCCGACACCAC
TGGGTCATACGGCGAGTGTGTGGCT-------------------------------------------------------
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------------------------------------------------------------------
>SNPs
S-SSSSS-SSSSSSSSSSSSSSSSSSSSSSSSS-----------------------------------------------
------------------------------S-----S--------S---SSSSS--------------------------
-------S-------------------------------------SS---------------------------------
--------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------SSS-S------------------------
--------------------------------------------S-S---------------------------------
---------------------S---------------------------SSSSSS-------------------------
-----------------------------------S--------S--------------------S--------------
-----S------------S------------S-S-------------------------------S--------------
-------------------------------------------------------------------------S------
--------------------------S-----------------------------------------------------
--------------------------------------------------------------------------------
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--S--------------------------------------S--------------------------------------
-----------------------------------S------------------------S-------------------
---------------------------------S-------------------------------------S--------
-------------------------------------------------------------------------S------
-------------SSS-SSSSSSSSSSSSSSS-----------S---------SS-------------------------
----S---S--------------------------S---SSS--S-----------------------------------
-------------SSSSS-SS--------------------------------S----------S---------------
--------------------------------------------------------------------------------
--------------S-------------------------------S---S-----------------------------
------S-------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------------------------
---------------------------S------------S---------------------------------------
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------------------------------------------------S-----SSSSSSSSS-----------------
-S------------------------------------------------------------------------------
------------S--------------------------------------S--S-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------S----------------
-------------------------S---------------------------------------------S--------
-----------------------S--------------------------------------------------------
---------------------------------------------S----------------------------------
-------------------------------------------------S------------------------------
---S----S--------------------------------S--------------------------------------
-----------------------S---S----------------------S-----------------------------
--------------------------S------------S----------------------------------------
------------------------SS-SS--S--SSS-------------------------------------------
---------------------------------------S----------------------------------------
--------S------------------S-----------------S----------S-----------------------
--------------------------S------------------------------S-----------------S----
------------------------------------------S-------------------------------------
----------------S----------------------------S--------------SS------------------
----------------------------S---------------------------------------------------
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----------------------------------------SSSSS----S------------------------------
S-------------------------------------------------------------------------------
-------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_402
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--------------------------------------------------------------TTACAGTTAGGCGCTGCA
CA------------------------------------------------------------------------------
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>reverse_2115
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------TTTTCGGGAAGATGCTGCCT--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------
>forward_899
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------G
TCCGTTTTCCTCGGTTCCT-------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------
>reverse_2119
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------CGGGAAGATGCTGCCTAACA----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------
>forward_1855
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------AGGAC
GGCGTCACTTTACAA-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------
>reverse_5599
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------GA
TCAGTTCGTGGACGCTGA--------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------
