>input_sequence_43246
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-----------------------------------------------------------------ATGGTTGCAGGTGGT
GCCACTCACAAGAGACCTCCTGCTGATGACATAATGATGCACCAAGAGGAGCCTGCAAACACGGATGCAAAAAATGATCA
TCACATTGCCATCTATTTCATCGACTCACCCCAACAAACAGACGACAGATTGATCCTGAGCGACAAGACCAATGGCCAGG
AGGATTACTCATTTCAGCACCACCTGCAAACACCAAGCTCGCCGCCCTGCTACTCCACCGACCACATGCTCCGC------
GCTGACCAAAGACACTACAACAGCAACAATGGCTCCCCTT----------------------------------------
--------------------------------------CTTCTTCCCAGCAGCAGCAGCAGCATGAGCGCTCTTCTTCCC
AGCAGCAGCAGCAGCA---------TGAGCGCTCTTCTAACCCACCAAGAAGAAGACAGTCGA---GAAGGCGACGCTTG
GCGGCGGCGGTGCCGTTCGTGAGGAAGATCAAGTGGGGACCATTGTGGGATAAGTCCAAGGAGTGGATCAAGAACCCCAT
GAACATGGCCCTCTTCGTGTGGATCGTCGCCGTGGGCATCTCCGGCGCCATCCTCTTCATGGTCATGACCGGGATGCTCA
ACGCCGTGCTGCGGACCAAGTCGCAGAAGGACACGTGGTTCGAGGTCAACAACCAGATACTGAACGCATTGTTTACCTTG
ATGTGCCTGTACAACCACCCCAGGAGGTTCTACCACCTGGCGCTGCTGTGCCGGTGGAGGGCCGGCGACATGGCCGCGCT
CCGGGAGGTCTACTGCAAGGGCGGCACCGTCAAGCCCAACGAGAGGAGGCACATGATGGTTGTGGTCTTGCTGCTCCACC
TCAACTGCTTGGCGCAGTACGCGCTGTGCGGCCTCAACCTCGGCCTCTCCAGGAACCGGCGGCCTCCCGTGGGGGTCGGC
CTCACCGTGACGGTTGCGATATGCGCCCCGGCCGTTGCCAGCATGTACAACAACCTCAGCCCCCTGGGGAAAGACTACGA
GGTCCAGGCCGCCGACGACGAGGAGCAGGAGTCTTCTTCTTCGGGCTCGCGGCAGCGGCTCCAGCACAAGACCGTCGAGA
GGAGGTACTCCTT-------CTCCCCTTCTCCGCCGCAGCGACAAGGACTAGAAATGGGCGCTGCCGGTGCCGTCGTCGT
TGAGGTGGGAGAA---GAAGAAGAAGGCACCGTGGCAGTGGCGGCGCCTGAGTGGTCGGGCGGGCTGGTGTG--------
-----GGACCTGTGGGAGGACATCTCGCTGGCGTACCTGTCGCTGTTCTGCAGCTGCTGCGTGTTCGGGTGGAACGCCGG
GCGTCTGGGGTTCGGCAATGCGTACGTGCACGCGGCGACTTTCATCCTGCTGTGCC--------TGGCGC--------CC
TTCTTCATCTTCACCCTGGCGGCCATCAACATCGACGACGAGGCGGCC-----AGGCTCGCGCTCAGCCTCGGCGGCACC
CTGCTGTGCGTCTTAGGGCTGCTGTACGGTGGGTTCTGGAGGATCCAGATGCGCCGCAGGTTCGGGCTTCCCGGCAGCGG
GTTTTGCTGTGGCAGGCCGGACGTGACGGACTGCTTCCAGTGGCTGTGCTGCTGCCCCTGCGCCCTCGCCCAGGAGGTCA
GGACCGCCGACGCCTACGACATTGTGCACCACAGGATGGTGTCTCGCCGTCAAAGCCAAAGCCGCCGCGGAGATGACGCC
GGCGAAGAAGAAGC---------CAGCAGCTCCCGGGTGCAGATGCAGCAGCCACTGAGGTTTGCAGGTGTTTTCGCTTC
AGATCATGGTGGGGTGACCAACACCAACAGCAATTCAGATACCAGTAACACGAGTACAACACCCCCTGCGCTGCCTGTTG
GCATACAGAGACAGTAA---------------------------------------------------------------
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------------------
>chr3B_1_TraesCS3B01G602800
GCGTGCTTGGTGGCCAAATCAACGAAATATCTGCCGGCCCAACCTTTGTTT------CTTCTTCTTGTTGTTGTTTCATT
CA-------------------TCGGTTGCTTCTATTGAGCTGCTGCTGCTTTACTTTCTTCAGCAGCTCATTCCTTGT--
----TTCTCCTCAAAAGAAAAAGAAAAATCAAATCTCTCCATC-------------CCTTAATCCTATCGAGCAAGAATT
CAACTCCATCCATTCTCCTCCTCCTCCTCACTTGTCATCTCAAAGAGGATCTCTCTCTCCCTCTCTCTCTATCTCTCTCT
-------ATCAAAAGAGGAGAGGGCAATCCAACCATCTGTCCGTCTCTCTGACTATGAGTTAGCTGCCGCACGCACGCAC
GCACGCACGATTAGTAG-------------------TAACAAGGTATGTACGTACTATCGTCTAAATCATTAATTT----
------GATTCATATCTGCTGCCT-----TTAATTTCTTCTAGCTTCCTTTGGAAACTTGCTACAGTAGTACTAGTATGT
AC-----------TCATTGATTTATGG------------TCTAACAGTATATATATGAATCATTTCATTTGCCCCACTAC
TTAATATCGATCCATCCATCATATGCAATTCATTCTAAACAAGGGGCCTTT---------CCTTCCTTTCTTTTTCTAAC
AATATA------TATAAGCTACAACTAGGCTATCTGCAACAGACTTTAAAACTCAAGTAGCTACCTTGCAAAACAAGACT
TGCTAGTGTGCCGGCACCCAATTTTGCTTCAGACTCAACTTCTCTTGGACTACTATCATCTTTTTGGCTCAGTTTTG---
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--------TTTCATAACCTTTTTTTTTTCCAGCAAAT---------CTAACCAAATGGGAG------------------C
TACAAGTGGA----TTATTATCATCTTTTTGGCTCTGTCCAGTCCTCCTTATGTGAACATCTAGCTCTTCAAAAAAGAAG
CAACATTATATTATACTTACCTGGTAGTTCAATCAAAGGGGGAAAGAAGTTGGCTTCGATCGGTTGCGATACTGCTATTT
CAGAGTATAT----------------ATATCCATCCTCCAAGCCTGTCCGTC----CGTCGAAACATGGTTGCAGGTGGT
GCCACTCACAAGAGACCTCCTGCTGATGACATAATGATGCACCAAGAGGAGCCTGCAAACACGGATGCAAAAAATGATCA
TCACATTGCCATCTATTTCATCGACTCACCCCAACAAACAGACGACAGATTGATCCTGAGCGACAAGACCAATGGCCAGG
AGGATTACTCATTTCAGCACCACCTGCAAACACCAAGCTCGCCGCCCTGCTACTCCACCGACCACATGCTCCGC------
GCTGACCAAAGACACTACAACAGCAACAATGGCTCCCCTT----------------------------------------
--------------------------------------CTTCTTCCCAGCAGCAGCAGCAGCATGAGCGCTCTTCTTCCC
AGCAGCAGCAGCAGCA---------TGAGCGCTCTTCTAACCCACCAAGAAGAAGACAGTCGA---GAAGGCGACGCTTG
GCGGCGGCGGTGCCGTTCGTGAGGAAGATCAAGTGGGGACCATTGTGGGATAAGTCCAAGGAGTGGATCAAGAACCCCAT
GAACATGGCCCTCTTCGTGTGGATCGTCGCCGTGGGCATCTCCGGCGCCATCCTCTTCATGGTCATGACCGGGATGCTCA
ACGCCGTGCTGCGGACCAAGTCGCAGAAGGACACGTGGTTCGAGGTCAACAACCAGATACTGAACGCATTGTTTACCTTG
ATGTGCCTGTACAACCACCCCAGGAGGTTCTACCACCTGGCGCTGCTGTGCCGGTGGAGGGCCGGCGACATGGCCGCGCT
CCGGGAGGTCTACTGCAAGGGCGGCACCGTCAAGCCCAACGAGAGGAGGCACATGATGGTTGTGGTCTTGCTGCTCCACC
TCAACTGCTTGGCGCAGTACGCGCTGTGCGGCCTCAACCTCGGCCTCTCCAGGAACCGGCGGCCTCCCGTGGGGGTCGGC
CTCACCGTGACGGTTGCGATATGCGCCCCGGCCGTTGCCAGCATGTACAACAACCTCAGCCCCCTGGGGAAAGACTACGA
GGTCCAGGCCGCCGACGACGAGGAGCAGGAGTCTTCTTCTTCGGGCTCGCGGCAGCGGCTCCAGCACAAGACCGTCGAGA
GGAGGTACTCCTT-------CTCCCCTTCTCCGCCGCAGCGACAAGGACTAGAAATGGGCGCTGCCGGTGCCGTCGTCGT
TGAGGTGGGAGAA---GAAGAAGAAGGCACCGTGGCAGTGGCGGCGCCTGAGTGGTCGGGCGGGCTGGTGTG--------
-----GGACCTGTGGGAGGACATCTCGCTGGCGTACCTGTCGCTGTTCTGCAGCTGCTGCGTGTTCGGGTGGAACGCCGG
GCGTCTGGGGTTCGGCAATGCGTACGTGCACGCGGCGACTTTCATCCTGCTGTGCC--------TGGCGC--------CC
TTCTTCATCTTCACCCTGGCGGCCATCAACATCGACGACGAGGCGGCC-----AGGCTCGCGCTCAGCCTCGGCGGCACC
CTGCTGTGCGTCTTAGGGCTGCTGTACGGTGGGTTCTGGAGGATCCAGATGCGCCGCAGGTTCGGGCTTCCCGGCAGCGG
GTTTTGCTGTGGCAGGCCGGACGTGACGGACTGCTTCCAGTGGCTGTGCTGCTGCCCCTGCGCCCTCGCCCAGGAGGTCA
GGACCGCCGACGCCTACGACATTGTGCACCACAGGATGGTGTCTCGCCGTCAAAGCCAAAGCCGCCGCGGAGATGACGCC
GGCGAAGAAGAAGC---------CAGCAGCTCCCGGGTGCAGATGCAGCAGCCACTGAGGTTTGCAGGTGTTTTCGCTTC
AGATCATGGTGGGGTGACCAACACCAACAGCAATTCAGATACCAGTAACACGAGTACAACACCCCCTGCGCTGCCTGTTG
GCATACAGAGACAGTAAGTAAGAATAAGATGTATGCATGGTTAGATGAGTAGCTAGGCTTAGCTACTGTAGATGTTTTTC
ACAGCAAGCAATCCATTGTAA----GTACATAGCAGAAGGAGGATACAAGGCAACTATGCTAGACATAGCAGAGTATATA
TACCCTGTCATATA-----TAGTATTCTGTC------------------TTTTCCCTGCTGAATTTTGAGAAATGATGAG
AATTTACTTCTTCTTAGAGCATCTCCAACAGCCGCGCTATAGCGCCGCGCGCAAAAAACCTTTTAGCGCGCGCGCTGCGG
CTGGTTTTGCGCGCCCGCCTGCGCTGGCTCCAGCAGCCGCGCTGAAATGCAGCGCGCGCGACTCGCCGGGCATTTTGCAT
ATATGGATATTTTGGACAAAAATAAACATGTTGTCAGCACACATGGAAATGAAGTTTGTTAGCAGAGCATCAGAAAAGGC
CATTTTGCTAGGCAAACCTGA--AGATACCAGGGCAGACAGAGTTTTGTTA-----------GTAAAAAATAATTACCTA
GGTAAGGTAAGGT-------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------AAAAAAAAATAGCGCCCACCGTGGGGCTCAAACCCACGACCACAAGGTTAAGAGCCTTGCGCTCTA
CCAACTGAGCTAGACGGGCTTGCTGTTTGAGTCAGTGGTTCCACTAGCC-CTAGACCAATTTTCTCTTTGAACTCCCAGA
GACCAAAAGAAGAAGAGAGAACCTGCAGAAAATGAGGACAAAAAAAAAACAGAGATTATGATGGATCAGCAGCACAGTGC
TTGAAAGAAATGAAATGAAATGAAAGCCATGATGGCATCTTTAGAATATGTAATTAATCAACATGTAGTATGAGAAGGCT
CTGTCATGTCACCGAAAGGATTCAAATCAAAGAAGAAAGACAAGTGATG------------CTCAGACTCAGCCAGGACC
ATGGCTGGACTGGTTA----------------------------------------------------------------
---TCCCCGACAAATAAAACCTCAAGCATTTTATACATGATAGTGATCAGATTTTCTACTAGCTTGTTCCTGTTTGTTGC
GCCTCAAGTGGACACCTT
>chr3D_12
-----------GGCCAAATCAACAAAATATCCGCCGGCCCAACCTTTGTTTCTTCTTCTTCTTCTTCTTCTTGTTCCATT
CATTCATCAGTTTGCTCCTCATCGGTTGGTTCTATTGAGTTGCTGCTGCTTTACTTTCTTCCCCTGCACCATCTATCTTC
AAGCTTGTCCTCAATCAAATC----AAATCAAATCAA---ATC-------------TCTTAATCCTATCTAGCAAGAATT
CAACTCCATCCATCCA--TCCTCCTCCTCACTTGTCATCTC--------TCTCTCTCTCTCTCAATCAAAAGAGGAGAGC
AGAGCAGAGC---AGAGCAGAGGGCAATCCAACCATCTGTCCGTCTCTCTGACTCTGAGTTAGCCGC----CGCACGCAC
GCACGCACGATTAGTAGGCCTCCTAGGAGGGCTAGCTAATAACAAAGGTATGTACCGTCGTCTAAATCATTGATTTGATT
TGATTGGATTCATATCTGCTGCCT-----TTAATTTGTTCTAGCTTCCTTTGCAAACTTGCTACAAC---AATAGTATGT
AG-----------TGATTGATTGATGCGTGCGCCAGTGCTCTAAGAGTATATATGAATGAA---TCATTTCCCCCTCTAC
TTAATATCGATCGATCCATCATATGCACTTCATTCTAAAGAAGGGGCCTTTTCCTTTCCTTTTTT---TTTTCTTTTAAG
AATATA---TAGTATAAGCTAGACCTGGGCTATCTGCAACAA--------------------------------------
-------------------------GCTAAAAACTCAACTTCTTTTTTCTTTCCGATTTAACTTTCAATCATATAGTCCC
ATTCTTCTTTCATTCAGACTCTTGTACAAATTAAA--------------------------GCCTCGACTTACTTTTTCT
CCTTCTTAAGTTACGACGATATATTAGATTGTTGCTTTGTACTTGCAC-----CATCCAACATTATTGGTATTACTTAGT
GGTGGCAATTTCAAAACCTTTCTCTTTAATTTGTGTGCAGCAAATCCTAACCAAATGGGAAGATCAAGCACCCTAGCTAC
TACAAGTGGATTATTTATCAGCATCTTTTTGGCTTCGTCCAGTCC---TTATCTGAACATCTAGCTCTACGAAAAAGAAG
CAACATTATACTTACTG---------GTTCAATCAGAGGGGGGAAAAAGTTATCTTCA----GTTGC-------------
--------------ACCTGTTATTTCATATATATCCTCCAAGTCTGTCCGTCCGTGCGTCGAAATATGGTTGCAGGTGGT
GGCACTCAAAAGAGACCTGCTGATGACATA------ATGCACCAAGAGGAGCCTGCAAACACGGATGCAAAAAATGATC-
--ACATTGCCATCTATTTCATCGACTCACCTCAACAAACAGAAAGAGG---GGTTCTGGGTGACAAAACAAATGGCCAA-
--GATTACTCCTTCCAGCAACACCTGGAAACACCGAGCTCACCACCCTGCTACTCCACGGACCACATGCTCGGC------
GCTGACCAAAGATACTACAACAGCAACAATGGCTCCCCTT----------------------------------------
--------------------------------------CTTCTTCTTCTTCT------------------TCTTCTTCTT
CGCAGCAGCAGCAGCA---------TGAACGCTCTTCTCACTCACCAAGAAGAAGGCAGTCCA---CAAGGCGACGCTTG
GCAGCGGCGGTGCCGTTCGTGAGGAAGATCGACTGGGGGTCCCTCTGGGGCAAGTCCAAGGAGTGGATCAAGAACCCCAT
GAACATGGCCCTCTTCGTGTGGATCGTCGCCGTGGGCATCTCAGGCGCCATCCTCTTCATGGTGATGACCGGGATGCTCA
ACGCCGTGCTGCGGACCAAGTCGCAGAAGGACACATGGTTCGAGGTCAACAACCAGATCCTCAACGCGCTCTTCACCCTT
ATGTGCCTCTACAACCACCCCAGGAGGTTCTACCACCTGGCGCTGCTGTGCCGGTGGAGAGCCACCGACATGGCCGCGCT
CCGGGAGGTCTACTGCAAGGGCGGCACCGTCAAGCCCAACGAGAGGAGGCACATGATGGTTGTGGTCTTGCTGCTCCACC
TCAACTGCTTGGCGCAGTACGCGCTCTGCGGCCTCAACCTTGGGCTCCCCAGGAGCCGCCGGCCTCCGGTGGGCGTCGGC
CTCACCGTGTCAGTCGCCATCTGCGCGCCCGCGGTCGCCAGCATGTACAACAACCTCAGCCCCCTGGGGAAAGACTACGA
GGTCCAGGCCGCCGATGACGAGGAGCAGGAGTCTTCTTCTTTGGGCTCGCGGCAGCGGCTCCAGCACAAGACCGTCGAGA
GGAGGTACTCCTT-------CTCCCCCTCTCCGCCGCAGCGACAAGGA---GAAATGGGAGCTGTTGTCATCGCCGTCGC
TGCC------GAAGAAGATGGTAT---------------G---TCGCCGGAGTGGTCTGGTGGGCTGGTGGC--------
-----GGACCTGTGGGAGGACATCTCGCTGGCGTACCTGTCCCTGTTCTGCAGCTGCTGCGTGTTCGGGTGGAACGCCGG
GCGTCTGGGGTTCGGCAACGCGTACGTGCATGCGGCCACCTTCATCCTGCTGTGCC--------TGGCGC--------CC
TTCTTCATCTTCACCCTGGCAGCCATCAACATCGACAACGAGGCGGCC-----AGGCTGGCGCTCAGCCTCGGCGGCACC
CTGCTCTGCGTCCTGGGCCTGCTGTACGGCGGGTTCTGGAGGATCCAGATGCGCCGGAGGTTCGGGCTCCCTGGTAACGG
CTTTTGCTGCGGCAGGCCTGACGTGACGGACTGCTTCCAGTGGCTGTGCTGCTGCCCCTGCGCCCTCGCCCAGGAGGTCA
GAACCGCCGACGCCTACGACATTGTGCACCACAGGATGGTGTGTCGCCGCGACAGCC---GCCGACCTGGAGACGGCGAC
GACCATGAAGAAGAAGGTGCCAGCAGCAGCTCCCGGGTCCAGATGCAGCAGCCACTGAGGTTTGCAGGTGTTTTTGCTTC
AGATACGAGT---------------------------------------ACGAGTACAATACCACCTGCTGTGCCTGTTG
GCATACAGAAACAGTAAG------TATGATGGATGTATGGTTAGATGAGTAGGCTTAACTGTGGC---TAGATCTTTTTC
ACAACAAGCAATCCATTGTAAGTACGTACATAGCAGAAGGAGGATACAAG-CAACTATGCTATTAAT---AGAGTATATA
TACCCTGTCAATATACTAGTAGTATTCTGTTGTACTAGTTATGATCCATTTTTCCCTGCTGAATTTTGAGAAATGAAAAT
TTAAATTTACCCTCCTTTTTTTTTTTGCATTGCTGTACATGTCAAGA---------------------------------
--------------------------------------------------------------------------------
-----------------------------------AGCACACATGGTTATGCAGTTTGTTAGCAGAACATGAGAAAAGGG
TATTTTGTTAGGCAACAGCCAACAGATACCAGGGCAGAGTTTGGTTAGCAGGCACAGTAAAGGTTAAAACAAATTACTGA
AGTAAATAGGCCCGCCATGGCAGTTCTGACACTCTCTTTTCCCTTCTGAATTTTGAGAAATGAAAAATCACCTAATTATT
TTGCATATGTCAAGAAATCAGCTCACATGGAAATGCAGTTTGTTTGGCAACAGATAACAGGGCATAGTTCTGTTAGCAGG
CACAGTAAAAGTAAAAGAAAAATTACCGCCCA---------------CCACGACCACAAGGTTAAGAGCCTTGCGCTCTA
CCAACTGAGCTAGACGGGCTTGCTTACTGGGTGAGTGATTCCACAGCCCACTAGACCAACTTCCTTTATGAACTCACAGG
CACCAAAAGG---AGAGAGCACCTGCAGGAAATGAAGGGAAAAGAAGAT--GAGATGATGATGGATCAGCAGCACATTGC
TTCAATA-----AAATGAAATGAAAGCCATGACGGCATCTTTAGAATATGTAATATGAGAAAGCT---------------
------TGTCACCAAAAGGATTCAAAC-----AAGAAAGAGAAGTGATGCTCAGGCTCAGGCTCAGACTCAGCCAGGACC
ATGGAATGGAATCTACTAGAGGAACACCCTTGACCGGTAGAGGTCCAAGACAGAAAAAATTATGCCCCCAGCTGGTTATC
CGGTCCCCGACAAATAAAACCTCAAGCATTTTATACATGATGATGATCAGATTTTCTACTAGCTTCTTCCTGTTTGTTGC
GTCTCAA-----------
>chr3A_12
-----------GGCCAAATCAACAAAATATCCGCCGGCCCAATCTTTGTTTCTTCTGCTTCTTCTTCTTCTTGTTCCATT
CAT----CAGTTGGCTCCTCATCGGTTGGTTCTCTTGA---GCTGCTGCTTTACTTTCTTCCTCTGCACTATCTTG----
AAGCTTCTCCTCAATCAAATC----AAATCAAATCAA---ATCAAATCTCTCCATATCTTAATCCTATCTAGCAAGAATT
CAACT----CCATCCA--TCCTCCTCCTCACTTGTCATCTC--------TCTCTCTCTCA--CAATCAAAAGAAAAAGAA
AAAGACAATCAAAAGAGGAGAGGGCAATCCAACCATCTGTCCGTCTCTCGGACTCTGAGTTAGCCGC----CGCACGCAC
GTACGATTAG-TAGTAGGCCTCCTAGGAGGGCTAGCTAACAAGGTATGTATGTACCATCGTCTAAATGATTGATTTGATT
----------CACATCTGCTGCCTTTTAATTAATTTCCTCTAGCTTCCTTTGGAAACTTGCTACACTAGTATGTACTGAC
TGCTTTGATTGATTGCTTGATTGATGCATATATGAGCG----------------------------ATTTCCCCCTCTAC
TTAATATCGATCGATCCATCATATGCAATTCATTCTAAACAAGGGGCCTTTTCCTTTCCTCTTTTTTCTTTTCTTTTAAG
AATATATACTAGTATAAGCTAGACCTGGGCTATCTGCAACAA--------------------------------------
-------------------------GCTAAAA-CTCAACTTCTTTTTTCTTTCCGATTTAACTTTCAATCATATAGTCCC
ATTCTTCTTTCATTCAGACTCTTGTACAAATTAAAAGGGGCATATCCTTGTGCAACTAGATGCCTGGACTTACTTTTTC-
-----------TACGACGATATATTAGATTGTTGCTTTGTACTGTACTTGCAGCATCCAACATTATTGGTATTACTTAGT
GGTGGCAATTTCATAACCTTTCTCTTTAATTTGTGTGCAGCAAATCCTAACCAAATGGGAAGATCAAGCACCCTAGCTAC
TGCAAGTGGATTATTTATCAGCATCTTTTTGGCTTCGTCCAGTCT---TTATCTGAACATCTAGCTCTACGAAAAAGAAG
CAACATTATACTTACTG---------GTTCAATCAGAGGGTGAAAAAAGTTATCTTCA----GTTGCGATACTGCAAACA
GAGCATCATACGGCACCTGTTATTTCATATATATCCTCCAAGTCTGCCCGTCCGTCTGTCGAAACATGGTTGCAGGTGGT
GGCACTCACAAGAGGCCTGCTGCTGACATA------ATGCACCAAGAGGAGCCTGCAAACACAGATGCAAAAAATGATCA
TCACATAGCCATCTATTTCATCGACTCACCCCAACAAACTCAAAGACA---AGTCCTGGGTGACAAGACCAATGGCCAGG
AGGATTACTCCTTTCAGCACCACCTGCAAACACCAAGCTCGCCGCCCTGCTACTCCACCGACCACATGCTCCGCGCTGCT
GCTGACCAAAGACACTACAATACCAACAATGGCTCCCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC
TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT------------------TCTTCTTCTT
CGCAGCAGCAGCAGCAGCAGCAGCATGAACACTCTTCCCGCCCACCACGAAGAAGACAGTCCAGAACAAGGCGACGCTTG
GCGGCAGCGGTGCCGTTCGTGAGGAAGATCAAGTGGGGACCACTGTGGGATAAGTCCAAGGAGTGGATCAAGAACCCCAT
GAACATGGCCCTCTTCGTGTGGATCGTCGCCGTCGGCGTCTCTGGCGCCATCCTCTTCATGGTGATGACCGGGATGCTCA
ACGCCGTCCTGCGGACCAAGTCGCACAAGGACACGTGGTTCGAGGTCAACAACCAGATATTGAATGCATTGTTCACCCTC
ATGTGCCTCTACAACCATCCCAGAAGGTTCTACCACCTGGCGCTGCTGTGCCGGTGGCGGGCCGGCGACATGGCCGCGCT
CCGGGAGGTCTACTGCAAGGGCGGCACCGTCAAGCCCAACGAGAGGAGGCACATGATGGTTGTGATCCTGCTGCTCCACC
TCAACTGCTTGGCGCAGTACGCGCTCTGCGGCCTCAACCTTGGGCTCTCCAGGACCCGCCGGCCTCCCGTGGGCGTCGGC
CTCACCGTGTCAGTCGCCATCTGCGCGCCCGCCGTCGCCAGCATGTACAACAACCTCAGCCCCCTGGGCAAAGACTACGA
GGTCCAGGCCGCCGACGACGAGGAGCAGGAGTCTTCTTCTTCGGGCTCGCGGCAGCGGCTCCAGCACAAGACCGTGGAGA
GGAGGTACTCCTT-------CTCCCCCTCTCCGCCGCAGCGACAAGGACTAGAAATGGCCGCTGTTGTCGTCGCCGTCGG
CGCG------GAAGAAGATGGTAT---------------GTTATCGCCGGAGTGGTCCGGCGGGCTGGTGGC--------
-----GGACCTGTGGGAGGACATCTCGCTGGCGTACCTGTCCCTGTTCTGCAGCTGCTGCGTGTTCGGGTGGAACGCGGG
GCGTCTGGGGTTCGGCAACGCGTACGTGCACGCGGCGACCTTCATCCTGCTGTGCC--------TGGCGC--------CC
TTCTTCATCTTCACCCTGGCGGCCATCAACATCGACAACGAGGCGGCC-----AGGCTGGCGCTCAGCCTTGGCGGCACC
CTGCTCTGCGTCCTTGGCCTGCTGTACGGCGGGTTCTGGAGGATCCAGATGCGCCGGAGGTTTGGGCTCCCCGGCAGTGG
GTTCTGTTGCGGCAGGCCGGACGTGACGGACTGCTTCCAGTGGCTCTTCTGCTGCCCCTGCTCCCTCGCCCAGGAGGTCA
GGACCGCCGACGCCTACGACATTGTGCAGCACAGGATGGTGTCTCGCC------------GCCGACCCGGAGACGGCGAC
GACCAAGAAGAAGA---TGCCAGCAGTAGCTCCCGGGTCCAGATGCAGCAGCCACTGAGGTTTGCAGGCGTTTTCGCTTC
AGAT---GGTGGGGTGACCAACACCAACACCA------------------------------------------------
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>chr2D_1704
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----------------------------------------------------------------GCGACATGCCCGCGCT
CCGGGAGACGTACTGCAAGGGCGTCACCGTCAAGCCCCGCGAGAGGAAGCACATGGCGATCGTCGTCCTGCTGCTCCAC-
--AACTGCTTCGCGCAGTACGCGCTGTGCCGCCTCAACCTCGTGCTCACCATGAGCCGGCGGCCTCCGGTGGCCGTCGCC
CTCACCGCGTCGGTCGCCATCTGCGTGCCGGCCGTCGCAAGCCTGTATAAGAACCTCAGCACCCTCGGCATAGACCACGA
GGCCCAGGCCACGGCCGACGAGGAG------------TCTTCTGGTTC---GCAGCAGCTCCAGCAGAAGACCGTCGAGA
AGAGGTACTCCTCTCCTCCGCAGGGAGAAAGAGAATGAGAA----------------GGAGCCGCCGCCGTCGTGGTCTT
CGAGGAGGAAGAA---GATGCCAC---------------GGCGGCGCCAGAGTGGGCTGGCGGGCTGCTGGAGCCTGGAG
CAGCTGGACCTGTAGGAGGACATCTCGCTGGCGTACCTGTCGGTGTTCTGCTGCTGCTGCGTGTTGGGGTGGAACGCCGG
GCGGCTGGGCTTCGGCAACACGCATGTGCACGCGGCCACCTTCATCCTCCTGTGCACGGCGGGATGGCGC--------CC
TTCTTCATCCTCACCCTGGCGGCCATCAACATCGATGACGAGGCGGCGCGGTGAGGCTCGCGCTCAG-------------
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------------------
>chr2A_1832
CTC-----------------------------------------------------------------------------
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------------------------------------ACCTCGTGCTCACCAGGAGCCGGCGGCCTCCGGTGGCCGTCGCC
CTCACCGTGTCAGTCGCCATCTGCGCGCCGGCCGTCGCTAGCCTCTATAACAACCTCAGGAGCCTCGGCATAGACCACGA
GACCCAGGCCACGGCCGACGAGGAG---------TCTTCTTCTGGTTC---GCAGCAGCTCCAGCAGGAGACCGTCGAGA
TGAGGTACTCCTT-------CAGGGAGAGAGAGAATGAGAA----------------GGAGCCGCCGCCGTCGTGGTCTT
CGAGGAGGAAGAAGAAGATGCCAC---------------GGCAGCGCCAGAGTGGGCGGGCGGGCAGCTGG-------AG
CAGCTGTACCTGTGGGAGGACATCTCGCTGGCGTACCTATCGGTGTTCTGCTGCTGCTGCGTGTTGGGGTGGAACGCCGG
GCGGCTGGGCTTCGGCAACACGCATGTGCACGCGGCCACCTTCATCCTCCTGTGCA--------CGGCGGGATGGCGTCC
TTCTTCATCCTCACCCTGGCGGCCATCAACATCGATGACGAGGCGGCGCGGTGAGGCTCGCGCTCAG-------------
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------------------
>SNPs
SSSSSSSSSSS------------S-------S----------------------------------S--S-----S----
----------------------------S----------S---------------------SS-S--S-SS--S--S---
--------------SSS--SSSSSS----------SSSSS----------------S------------S----------
-------------S-SSS-----------------------SSSSSSSS----------S---SS--SSS-SSSSSSSSS
------------------------------------------------------S---------S--SSSS---------
--------------------------------------------------S----S---------------S--------
-----------------------------------------------------------------S-----S--------
-S------------S-------S---S-----------------S---------SSSSSSSSSS------S----S----
------------S------------------------------------------------S--SS-S-S--S--S---S
---------------------S-S--S--------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSS---SS-S-----------S--SSSS-S-SSSSS-SSS---SSS---SS-SSS---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------S-S---SSSSSSSSSS-----------------------S-------------------
------------------S-S-------------SS---------SSS----S---------------S-S---------
----------S-SSSSSSSSSSSSSS---------S---------S-----SS----SSSSS-------------S-SSS
S--SS-SSSS--------------------SS----------S-------------------------------------
-S----------------S-------SSSSSSSSSS--------------------------------------------
------------------------------------------SSSSS-SSS-S-----S-S-------------------
----------S---------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSS--------SS
S---------------------------S---------S----------------------S----S-------------
------------------------------------------S-------------------------------------
------------------------------------------S--------------------S----------------
-------------------------------------------------------------------------S---S-S
--------S-----------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------S----------S------------------S------
---------S----S--S--S-----S--------S--------------------------------------------
--------------------------------------------------------------------------------
--------------------------S----------------------------------------SS-S---------
-----S--S---------S-SSSSSSSSSSSSSSSSSSS---------S---------------------SS--------
--------------------------------------------------------------------------------
------------------S--------------------S----------------------------------------
--------------------------------------------------------------------------------
-----S------S-S--S-----------S--------------------------S-----------S-----------
---------S----------------------------------------------------------------------
-------------------------------------------------SS-S----SSS----S-S------S-S--S-
-S-S---------S------------------------S-----------------------------------------
----SSS----------------------S--SSSSSSSSSSSSSSSSS----------S---S-----SS---------
---------S--------SSSSSS--S----S---S----------------SSSSSSS-SSSSSSSS-----S------
---S----------------------------------------------S-----------SSS--SSS----------
----------SSSS----------------S---------------------------------------------SS-S
SSSSSSS-S-SSSSSSSSSSS-S-SSSSSSSS-SSSSS--SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------SS---S--------------S---S--------S
S------S-------SSSSS------------------SSSS-S--S-SSS-------------S----SS------SS-
S----SSSSSSSS-------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------S-----S--S------SSSSSSSSSSSSSSS---------------------------------
------------------------SSS--S--S----S------SSS------------S--S--S-S-------S---S
S--------SSSS------S--------S------S-SS----S--S-SSS-----S-------------------S---
--S--SSSSSSS--------------------S---------------------SSSSS--SSSSSSSSSSSSSSSSSSS
SSSSSS-------S------------SSSSSS--------S---------------------------------------
----SSS-SSSSS-SS----------------------------------------------------------------
-----------------------------------------SS----------------------S--------------
-S-----SSSSSSSSSSS
>forward_708
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------CAAGGGGCCTTTCCTTCCTT------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------
>reverse_2760
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------TTTCATCCTGCTGTGCCTGG---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------
>forward_1732
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------CCCCTTCTTCTTCCCAGCAG----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------
>reverse_3247
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------AACACGAGTACAACACCCCC--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------
>forward_2595
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------AGAAGAAGAAGGCACCGTGG---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------
>reverse_4315
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------AAGGCT
CTGTCATGTCACCG------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------
