>input_sequence_43228
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------------------------ACCCGCTCCTCCTCCCAATGGACAATTTCAAGATCACTAGTTACGCCAATGCGCTG
GTGGAAAACACTAAGCTTGACTTCCAAAGCTTGTATCTGCACAGGATCAGGTCTGGGGATAAGAAAAACCAGTATGTGGT
GATAGATGGAGTTGGTGCTACTGACATTTGTCTCACAACCATCAACGACTGGGCAATATATGATGGTGCGGCCGTGGACG
CAAAGCTAGTTGCTCATGCAAAAGGCATGCATATGAATGCTGCCGCTGCTGACTGCTGCAATTTATTCATCATAGTGTTC
GAGCTTGACAGGTAACTTGTATGTGTTTTGTCTTGTAATGTGCTAGCATGTTATC-TTTT----TTAGTATCACATTTTC
TTGGTGTGTGCATCTG--ATATTTGTGAATCACATAGCTTCAAAGGATCCACGCTTGCAGTAATGGGAGCAACTACAGAG
GAACAAGGTGAATGGGCTATTGTTGGTGGGACTGGTCAGTTCGCTATGGCGCGTGGTGTCATCCAGAGGAAAATGCATCA
AAAATTAGCTGAT------GGACAAGGAGATGTGTTAGAGCTTACTATCGAGGCATTCTGCCGCAGGAAGGTGAGCGTTC
TATTCAATTTTTGTACAGATTTACTTGCAACTTCCACACTC-AGTCTTTAGATTTTAGATACATACATACATATTTTGCT
AATCCTTATAGCTGGATCACGCAAACCTACCGGTAGATCTACCAGTATTCCAAATTGTACA--T-TTTTTTGTTTCTGCT
GTTATTTCTACTATTATGAACAAGTTGGATGTGCATTTCTCAAAGGAAAGTA-TATTGCTGACAAAGTTTCACTACTTGC
AT----A--CAGGGGCAGCCGGAGCCTCCGGCCACCACTCCGCAGACTCCTACCAC---CCAGCCGATTCAGCCTCCTGT
TCAGCCGCCTCTTGCCACCACCCAGCCCATTCAGCCTCCTGTTCAGCCACCTCCTGCCCCCACGAAGCCGATTCAGCCTC
CTACCCCCACTCCCATAAAGAATGGACCATGGGGCGGAACAACGAGTGACACACTTCATCATTTCAACCCAAACATGTCT
AAAGGCCTAAAGAGTGTGACATTCATCTATTATCGGGCTGTTAATGGACTTCGTTTCAATTATACCGGCCAAGATGGCTA
TGAAGAATCCAGCGAACTTTTTGGTAATAACGGCCAGGGCCCCGACGCTAAAAGG---GTGAGTTTCGTTCACTATTTGT
TTCCTCATGCATTTGGTCAACAATATAGC-AGTTTCGTCCCCTTCTTGTCGTTGTTCGTTGAGTTGCCAAAATTATATCA
TCACTTACGTTTTTTT-CCTGTCCATTTGGCAGCAAACGGTTCATCTAGGCCCTAAGGAGTTTGTGACGGGGCTGTCAGG
AACATACCAACATGAAGGCAGATCAAATAATATTGCTATATATTCCCTTAAGCTGGTCACCAACCTCGGCAAAACTCATG
GACCTTTTGGAACTGCTAGCATAGGCACCGGTTTCAGCTTTTTGGTGCCTCCAAACAGCAGAATTGTGGGCTTCTTTGGG
GGATCTACCGGTTACGCCGTCAATTCAATTGGTGCCTACACGCTCGAAAATTCTGCTTAGCAAAGCATGATTTACTTGAT
GCAGCTGCAATTTTCGGTTGTAGCCATATCACGGTTAGGGTTTAAGCTAAGCCAGCGTTGCTTTATTTTTTTTCTTTTAC
ACAAATAATAAAGATTGTAAGGATCTACCTACCCTATGTATTCACAAGCAATTTATGGTTCTTGTACCTTTTTTTCCGAC
AATGAAACGCTGTTCTCCGC------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------
>chr3D_1_TraesCS3D01G516700
TTCATGAGCCAAAAGGAATGATAATGCAATATGCGGGCAGGGCCATTGGTGAATTTGATCAAGCATGCACATTTGCACAA
GGCACACACGAGTATGAACCTGAAACAATACTCCATGGATAGGCGATTGATAGGCTTGCGAAGACTCACCGGAGATCACT
TGGGTTAAAACATGACCATTTTCTCAACTTATCTCACGGCCCCATGAAGGAACAATCGTCTCGGTTTCCGTCGGTCATCA
TGCTTAACTCCCACGGAGTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCATACAAATTGCCGGCCA
TGCATAGAATCAAGCCATCGCACCATCCACCATGGTCCTCATCAAGGCGTAGACTTGACGGTGAATACTTTTAACGGAAG
TGTTTATGGAGTAACAGCACTTTGTCAAGATGTATTAGGCATCTTTTGCATCCATGTGAC----GTGCAATAATAGCTGT
ACTCATGTGCTGTTTGGCATGATGTAT------------TAGGTGTCTCGAGCATGATGGGCCTAGCTGTACATGTTCTG
TT----------ATCTCTACATCATTATGAAGATAAGCCATTATGTACTTA-----AAAAACAGATGAGTCGTTGGAGAG
ATAGCCAACCAACAAGCTGAGACTAAATGTAAAGACT--TGTGAAACTAATTGGAAGCAAGACTTGGTAGCGTTCTGTCG
ATGCTATAAA--------------T--------------CACACAAGGCAAAAGAGAAGCTCTACACTTGATAGGTATCC
TCAGTTGTCCTCA---CCCCCTCCACCCGCTCCTCCTCCCAATGGACAATTTCAAGATCACTAGTTACGCCAATGCGCTG
GTGGAAAACACTAAGCTTGACTTCCAAAGCTTGTATCTGCACAGGATCAGGTCTGGGGATAAGAAAAACCAGTATGTGGT
GATAGATGGAGTTGGTGCTACTGACATTTGTCTCACAACCATCAACGACTGGGCAATATATGATGGTGCGGCCGTGGACG
CAAAGCTAGTTGCTCATGCAAAAGGCATGCATATGAATGCTGCCGCTGCTGACTGCTGCAATTTATTCATCATAGTGTTC
GAGCTTGACAGGTAACTTGTATGTGTTTTGTCTTGTAATGTGCTAGCATGTTATC-TTTT----TTAGTATCACATTTTC
TTGGTGTGTGCATCTG--ATATTTGTGAATCACATAGCTTCAAAGGATCCACGCTTGCAGTAATGGGAGCAACTACAGAG
GAACAAGGTGAATGGGCTATTGTTGGTGGGACTGGTCAGTTCGCTATGGCGCGTGGTGTCATCCAGAGGAAAATGCATCA
AAAATTAGCTGAT------GGACAAGGAGATGTGTTAGAGCTTACTATCGAGGCATTCTGCCGCAGGAAGGTGAGCGTTC
TATTCAATTTTTGTACAGATTTACTTGCAACTTCCACACTC-AGTCTTTAGATTTTAGATACATACATACATATTTTGCT
AATCCTTATAGCTGGATCACGCAAACCTACCGGTAGATCTACCAGTATTCCAAATTGTACA--T-TTTTTTGTTTCTGCT
GTTATTTCTACTATTATGAACAAGTTGGATGTGCATTTCTCAAAGGAAAGTA-TATTGCTGACAAAGTTTCACTACTTGC
AT----A--CAGGGGCAGCCGGAGCCTCCGGCCACCACTCCGCAGACTCCTACCAC---CCAGCCGATTCAGCCTCCTGT
TCAGCCGCCTCTTGCCACCACCCAGCCCATTCAGCCTCCTGTTCAGCCACCTCCTGCCCCCACGAAGCCGATTCAGCCTC
CTACCCCCACTCCCATAAAGAATGGACCATGGGGCGGAACAACGAGTGACACACTTCATCATTTCAACCCAAACATGTCT
AAAGGCCTAAAGAGTGTGACATTCATCTATTATCGGGCTGTTAATGGACTTCGTTTCAATTATACCGGCCAAGATGGCTA
TGAAGAATCCAGCGAACTTTTTGGTAATAACGGCCAGGGCCCCGACGCTAAAAGG---GTGAGTTTCGTTCACTATTTGT
TTCCTCATGCATTTGGTCAACAATATAGC-AGTTTCGTCCCCTTCTTGTCGTTGTTCGTTGAGTTGCCAAAATTATATCA
TCACTTACGTTTTTTT-CCTGTCCATTTGGCAGCAAACGGTTCATCTAGGCCCTAAGGAGTTTGTGACGGGGCTGTCAGG
AACATACCAACATGAAGGCAGATCAAATAATATTGCTATATATTCCCTTAAGCTGGTCACCAACCTCGGCAAAACTCATG
GACCTTTTGGAACTGCTAGCATAGGCACCGGTTTCAGCTTTTTGGTGCCTCCAAACAGCAGAATTGTGGGCTTCTTTGGG
GGATCTACCGGTTACGCCGTCAATTCAATTGGTGCCTACACGCTCGAAAATTCTGCTTAGCAAAGCATGATTTACTTGAT
GCAGCTGCAATTTTCGGTTGTAGCCATATCACGGTTAGGGTTTAAGCTAAGCCAGCGTTGCTTTATTTTTTTTCTTTTAC
ACAAATAATAAAGATTGTAAGGATCTACCTACCCTATGTATTCACAAGCAATTTATGGTTCTTGTACCTTTTTTTCCGAC
AATGAAACGCTGTTCTCCGCCTTCACTTCGAAGCTCGCCAGTTCCATTGCATGTCAAGCTGGAATCAGTATAAAAGAAGA
GAAGACCTGATGAGATCCCATAGAGGACTTGCTTATTTATAGTTAGTCTCTTCAAGTTTCTTATAATTTACTGCAACCGA
ACTATTAGCATCTTGATGCGATCTCATCCTTCACATGTGAGATGATAGAGACAAAAAAATTGGTAACATGATGTGCTTAG
TCATGGTGCGCTGAAGCCCACTATTCAAAACTTTACTCATAATTGCTAAAATAATTTGGAGACAGCAATCATTAGGCCAA
AGGAGGCAACATATGTAGTGCAATATGTGAGGACGCGCGCTGTTGGGGATGCCTAGGAGGAAGAAGGAAAACACACGCAC
ACAAGAAGAATAACACACGTTTGGCACCACACAACTTGTGCCGTTTATTGTATTTCTTCTCACACAATGAACGGGATTAC
AGGCTTAAGTAGCCAAACTCACACGGGTAAGACGCAAGCACTACCTAGATTGCACACACGCACATATTCATGATCAAGCC
ACTACTAACGGCTTGATCCAGCACTAGCTAGCTGGCCACATAATTCGGACAACGTGTGATTGCATGCATCCTTATCTACC
TATATCTATATACTATACCCCTACTAATAAAGGGAGGTGATATTCTTGGTTTTGTCCTATCAAGTGCATTATTTTGCATA
TATATAGGACCCCTGACTTTCTCGTGCAATGCATCAAGTGAAAAAGAAATTGAATCAACATGTGGCGAGCGATGTCCGCA
CGTCACCCGCCTGGGCCAATATAGTCCAACAAGAATTCGTTTGCGACACAAGACCAGGTTGGCGTCGGTCGACCCACTCA
CCGCGCCTAAAAAAGACATGATGGGACATGATGGGACACAACAGAGGGAGGTCAGGGTGGAGGCATCAACCATGGCGCCT
CATGCCCCCATAGAGTCCACGACGACGATGCCATCCGACAAGATGATGATGACGGAAGAC
>chr3D_2
-TCATGAGCGGAAAGGAATGATAGTGCAATCTGCGGGGACGATCGTCGGTGAATTTGATCAAACATGCACAT--------
GGCACACATAAATACGAAACTGAAATAATAATTCATGGTTATGCGATTGATAGGCTTGCGAAGACTCACCCGCTCACCGG
AGATCCTGTGGGCG------------ACTTATCTCACCACCCTAAGAAGGAATAATCGTCTCTGTTTCCCTTGGGCGTCC
TGCTCAACTCGCATGGAGTTCAGGAATGAAGGGCCAGGGGGTAGCCGTGGTACATCCAGAAGGTGCTAAACCAAAGATAA
CCTTAATAAGACCATTT---------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------GTCCTCAGTAAGGCGTAGACATGACGGTGAATACTTTTAAAAGAAT
CATTCAAGGAGTAGCAGCACTCATGTGCTCTTA------------TTGCATCCATGCCAT----GTGC---AATAGCTGT
ACTCATGTGCTCTTTGGCATGATGTAT------------TAGTTATCTCGAGCATGAGCC-----TACT--CATGTGCTG
TTGCCATTGCCGATCTGTAGACCAGTATGAAGTCAGAATCATCGTCATTATATATTCTAAACAGAGAAGTCAATGGAGAG
ATAGCCAATCAACAAGCTGGGACTAATCGTAAAGACT--TGAAGCAAGACTTGGT------ACTTGGTAGCTTTCTATGG
ATGCTATAAA--------------TACCCCTCGCCAAATCAAACAAGGCAAAAGAAAAGCTGTCCTCTC-----------
-----------TCACCCCCCCACCACCACC-------ACCAATGGCCAATTTCAAGATCACTAGTTACGCCGGCGTACTG
GTGGAAAACAGCAAGCTTGACTTCCAAAGCTTGTATTTGCGCAGGATCATTTCTGGGGATAAGAAAAACCAGTATGTAGT
GATAGATGGATTTGGTACTACTGACCTTGGTCTCACAACCATCAACGACTGGGCAATATATGATGGTGTGGCCCCTGGCG
CAAAGCTAGTCGCTCGTGCAAAAGGCATGCGTATGAATG------CTGCTGGCTGGTGCAATTTATTCATCATAGTGTTC
GAGCTTGACAGGTAACTTGTATGTGTTTTGTCCTGTAATGTGCTAACATGTTACATTTTT----TTAGCATCACATTGTC
TTGGTACATGTATATG--ATATTTGTGAACCACATAGGTTCAAAGGATCCACGCTTGAGGTAATGGGAGCAACTACTGAT
GAACAAGGGGAATGGGCTATTGTTGGTGGGACTGGTGACTTCACTATGGCGCGTGGTGTCATCCAGAGAAAAATACATCA
AAAAGAAGCTGAT------GGA------GATGTATTAGAGCTTACTATCGATGCATTCTGCCGCATGAAGGTGAGTGCTT
CTA-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------------------
>chr3B_540
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------------------------------------------------------CTTCATACAAATTGCCGGC--
--CATAGAATCAAGCCATCGCACCATCCACCATGGTCCTCATTAAGGCGTAGACTTGACGGTGAATACTTTTAACGGAAG
TGTTTATGGAGTAACAGCACTTTGTCATGATGTATTAGGCATCTTTTGCATCCATGTGAC----GTGCAATAATAGCTGT
ACTCATGTGCTGTTTGGTATGATGTAT------------TAGGTGTGTCGAGCATGATGGGCCTAGCTGTACATGTTCTG
TT----------ATCTCTACATCATTATGAAGATAAGCCATTATGTACTTA-----AAAAACAGATGAGTCGTTGGAGAG
ATAGCCAACCAACAAGCTGAGACTAAATGTAAAGACT--TGTGAAACTAATTTGAACCAAGACTTGGTAGCGTTCTGTCG
ATGCTATAAA--------------T--------------CACACAAGGCAAAAGAGAAGCTCTACACTTGATAGGTATCC
TCAGTTGTCCTCA---CCCCCTCCACCCCCTCCTCCTCTCAATGGACAATTTCAAGATCACTAGTTACGCCAATGCGCTG
GTGGAAAACACTAAGCTTGACTTCCAAAGCTTGTATCTGCACAGGATCAGGTCTGGGGATAAGAAAAACCAGTATGTAGT
GATAGATGGAGTTGGTGCTACTGACATTTGTCTCACAACCATCAACGACTGGGCAATATATGATGGTGTGGCCGCGCATG
CAAAGCTAGTTGCTCATGCAAAAGGCATGCATATGAATGCTGCCGCTGCTGACTGCTGCAATTTATTCATCATAGTGTTC
GAGCTTGACAGGTAACTTGTATGTGTTTTGTCTTGTAATGTGCTAGCATGTTATC-TTTT----TTAGTATCACATTTTC
TTGGTGTGTGCATCTG--ATATTTGTGAATCACATAGCTTCAAAGGATCCACGCTTGCGGTAATGGGAGCAACTACTGAG
GAACAAGGTGAATGGGCTATTGTTGGTGGGACTGGTCAGTTCGCTATGGCGCGTGGTGTCATCCAGAGGAAAATGCATCA
AAAATTAGCTGATGGACAAGGA------GATGTATTAGAGCTTACTATCGAGGCATTCTGCCGCAGGAAGGTGAACTTTC
TATTCAATTTTTGTACAGATTTACTTGCAACTTCCACACTC-AGTCTTTAGATTTTAGATACATACATACGTATTTTGCT
AATCCTTATAGCTGGATCACGCAAACCTACCGGTAGATCTACCAGTATTCCAAATTGTACA--T-TTTTT-GGTTCTGCT
GTTATTTCTACTATTACGAACAAGTTGGATGTGCATTTCTCAAAGGAAAGAA-TATTGCTGACAAAGTTTCACTACTTGC
AT----A--CAGGGGCAGCCGGAGCCTCCGGCCACCACTCCGCAGACTCCTACCAC---CCAGCCGATTCAGCCTCCTGT
TCAGCCGCCTCCTGCCACCACCCAGCCCATTCAGCCTCCTGTTCAGCCACCTCCTGCCCCCACGAAGCCGATTCAGCCTC
CTACCCCCACTCCCATAAAGAATGGACCATGGGGCGGAACAACGAGTGACAAACTTCATCATTTCAACCCAAACATGTCT
GTAGGCCTAAAGAGTGTGACATTCATCTATTATCATGCTGTTAATGGACTTCGTTTCAATTATACCGGCAAAGATGGCTA
TGAAAACTCCAGCGAACTTTTTGGTAATAACGGCCATGGCCCCGACGCTAAAAGG---GTGAGTTTGGTTCACTATTTGT
TTTCTCATGCATTTGGTCAACAATAGATCGAGTTTCATACGCTTCATGTCGTTGTTCGTTGAGCTGCCAAAATTATAGCA
TCACTCACGTTTTTTCCCCTGTCCATTTGGCAGCAAACAGTTCACCTAGGCCCTAGGGAGTTTGTGACGGAGCTGTCAGG
AACACACCAACATGAAAGAAGATCAAATAATATTGCTATATATTCCCTTAAGCTGGTCACCAACCTCGGCAAAACTCATG
GACCTTTCGGAAGTGCCAACATAGGCGCCGCTTTCAGGTTTTCCGTGCCTCCAAACAGCAAAATTGTGGGCTTCTTTGGG
GGATCTACCGGTTACGCCGTGAATTCAATTGGTGCCTACACGCTCGAAAATTCTGCTTAGCAAAGCATGATT-ACTTGAT
GCAGCTGCAATTTTCGGTTGTAGCCATATCACGGTTAGGGTTTAACCTAAGCCAGCGTTGCTTTATTTGTTTTATTTTAC
ACAAATAATAAAGATTGTAAGGATCTACCTACCCTATGTATTCACAAGCAATTTATGGTTCTTCTACCTTTTTTT-CGAC
AATGAAACGCTGTTCTCCGCCTTCACTTCGAAGCTCGCCAGCTCCATGGCATGTCAAGCTGGAATCAGTATAAAAGAAGA
GAAGACCTGATGACATCCCATCGAGGACTTGCTTATTTATGAATAGTCTCTTCAAGGTCCTTCTAATTTACTACAACCCA
ACTATTAACATCTTGA----------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------------------
>chr7D_588
--------------------------------------------------------------------------------
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---------------------------CACTATGGTCCCCAGCAAGGCGTAGACTTGATGGTGAATACTTTTAACATAAG
TGTTCAAGGAGAAGCAGCACTCATGTGCTCTT---------------GCATTCATGTCACGTACGTGC---AATAGCTGT
ACTCATGTTCTCTTTGGCAGTTTGGCCTGATTTATTAGCTACGTATATCCAGCATGAGCCAACAGTACT--CATGTGTTG
TTGCA------GATCTCGAGATCATTATGATGATAGAAAAGTCGTCACTATGTATTAAAAACAGATGAGTGGTTGGAGAG
ATAGCCAATCAGCAAGCTGGGACTAAACTTGAAGACT--TGTGAGACTAATTTGAAGCAAGGCTTGGCAGCGTTCTATGG
ATGCTATAAA--------------TACCCCTATC--------------CAAGAGAAAAGCTCTACACTTCATAGGTATCC
TCAGTTGTTCTTCACCCCCAC----CCACC-------CCAAATGGCCAATTTCAAGGTCACTGGTTATGCCGGGGCAC--
-TGGAAAACACTAAGCTTGACTTCCAAAGCTTGTATTTGCATAGGATTAATTCTGGGGATAAGAAAAACCAGTATGTAGT
GATAGATGGATTTGGTACTACTGACCTTGGTCTCACAACCATCAACGACTGGGCAATATATGATGGTGTGGCCCCGGACG
CAAAGCTAGTCGCTCGTGCAAAAGGCATTCGTGTGAATG------CTGCTGACTGGTGCAATTTATTCATCATAGTGTTC
GAGCTTGACAGGTAACTTGTCTGTGTTTTGTCCTGTAATGTGCTAACATGTTACTCTTCTTTAGCTAGCATCACATTGTC
TTGGTACATGCATATG--ATATTTGTGAATCACACAGTTTTAAAGGATCCACGCTTTCTGTAATGGGAGCAACTGCTGAG
GAACAAGGTGAATGGGCTATTGTTGGTGGGACTGGCGACTTCGCTATGGCTCGTGGTGTCATCCAGAGAAAAATACATCA
AAAGGTAGCAGAT------GGA------GATGTATTAGAGCTTACTATCGATGCAGTCTGCCACAGGAAGGTGAGCGTTA
TATTCAATTTTGTATAGGTT-----------TTCCTCACTC-AAACTTTAGATTTTACATACG----CATACATTTTGCA
AA---TATC----GGATCACACAAACCTC--------TCTACCGGTATTCCAAATCGTACAATT-TTTTT-GTTTCTGCT
TTTATTTCTACTCTTACGAGCAAGTTGGATGTGCATTTCTCAAAGGAAAGAAACATTGCTGACAATGTTTCACTACTTGC
AT----ATACAGGGGCAGCCTTCAC---------CCACTCCGCAGCCTCCTGCCCCAAGCCAGCCGATTCAGCCTCCTGT
TCAGCCGCGTCCTGCCCCCAC-----------------------------------------------------------
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------------------------------------------------------------
>chr7B_814
--------------------------------------------------------------------------------
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----------------------------------------------ATTATGTATTAAAAACAGATGAGTGGTCGGAGAG
ATAGCCAATCAGCAAGCTGGGACTAAACGTGAAGACTTGTGTGAGACTAATTTGAAGCAAGGCTTGGCAGCGCTCTATGG
ATGCTATAAATAGGCCTCTTCAAGT--------------CACACAAGCCAAAAGAAAAGCTCTACACTCGATAGGTATCC
CCAGCTGTTCTCTCACAC-------------------CCCCATGGCCAATTTCAAGGTCACTAGTCATTCGGGCGCACTG
GTGGAAAACACTAAGCTTGACTTCCAAAGCTTGTATTTGCACAGGTTCATTTCTGGGGATAAGAAAAACCAGTATGTAGT
GATAGATGGATTTGGTAGTACTGACCTTGGTCTCACAACCATCAACAACTGGGCGATATATGATGGTGCGGCCTCGGATG
CAAAGCTAGTCGCTCATGCAAAAGGCATGCGTATGAACG------CTGCTGACTGGTGCAATTTATTCATCATAGTGTTC
GAGCTTGACAGGTAACTTGTGTGTGTTTTGTCCTGTAATGTGCTAACATGTT-CTTTCTC----CTACTATCACATTCTC
TTTGTAGAAGCATATGATATATTTGTGAATCACATAGGTTCAAAGGATCCACGCTTTCTGTGATGGGGACAACCACTGAG
GAACAAGGTGAATGGGCTATTGTTGGTGGGACAGGTGACTTCGCTATGGCGCGTGGTGTCATCCATAGAAAAATACATCA
AAAAGTAGCTGAT------GGA------GATGTATTAGAGCTTACTATCGATGCATTCTGCCACAGGAAGGTGAGCGTTA
TATTCAATTTTGTATAGGTT-----------TTCCACAGTCAAAACTTTAGATTTCACATACG----TATACATTTTGCA
AATCCTATC----GGATCACACAAGCCTC--------TCTACCGGTATTCCAAATCGAACAATTGTTTTT-GTTTCTTCT
TTTATTTCTACACTTACGAGCAAGTTGGATGTACATTTCTCGAAGGAGAGAAATATTGCTGACAATGTTTCACTACTTGC
ATTCATATACAGGGGCAGCCTTCAC---------CCACTCCGCAGCCTCCTGCCCCATGCCAGCCGATTCAGCCTCCTGT
TCAGCCGCGTCCTGCCCC--------------------------------------------------------------
-------CACTCCCATAAAATATGGACCATGGGGCGGAACTG---GTGAAAAACTTTACCAGTTCAACCCAAACATGTCT
GTACGCCTAAAGAGTATGACAGTCTTCCGTCATTATGCTGTTAATAGACTTACTTTCACTTATACCGGCCAAGATGGCCA
GGAACACACCAGCGAACTTTTTGGTAATAGCGTTCTTCGTGGCAACAAAGTTGACAATGTGAGTTTGGTTCACTATTCGT
TTCCTCATCCATTTGATCAATAATAT-----GTTTGGTCTTCTTCTTGTCCTTGTTCATTGAGATTCCAAAATTATAGCA
TCACTTATGGTTTGGTTT-TGTCCATTTGGCAGCAAACATTTCAGCTCGGCCCAACGGAGTTTCTGACAGGGCTGTCAGG
AACATACGGCCATGAATCCAGATCAAACAATATTGCTATGTATTCCCTTAAGCTGGTCACCAACCTCGGCAACACTCATG
GACCTTTCGGAACTCCTGCGATAGGCACCCCTTTCAGCTTTTCTGTGCCTCAGAACAACAGAATTGTGAGCTTCTTTGGG
GGATATACGGGTTACGCCATCAATTCAATTGGTATCTACACGCTCGACAATTCTGCTTAGCAAGCATGTTTT-ACTTGGT
GCAGCTACAATTTTCGACTGTAGCAATAAGACGGTTAGGGTTCTCCCTAAGCCAGCGTTGCTTTATTAGTTTTATTTTAC
ACTTATATTTAAGATGGTAAAGATCTGCCTACCCCATGC---CACAAGTAATTTATGGTTCCTGTACCTTTTTTT-C---
--------------------------------------------------------------------------------
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------------------------------------------------------------
>SNPs
S--------SS------------S------S------S-S-SS-S-S---------------S---------SSSSSSSS
--------SS-S--S---S------S----S-S-----S--S----------------------------S-SSSS-SSS
S-SSSSSSSSSSS-SSSSSSSSSSSS-----------SS---S-S-------S---------S------S-S--S-S--S
----S-----S--S-------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------SS
SS------------------------------------------------------------------------------
---------------------------S----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------S---------------------------------------------------
-----------------------------------------------------------------------------S--
--------------------------------------------------------------------------S-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------S-----------------S---
--------------------------------------------------------------------------------
----------------------SSSSSS-----S----------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------S---------
----------------S---------------------------------S-----------------------------
--------------------------------------------------------------------------------
-----------S--------------------------------------------------------------------
---------------------------------------------------S----------------------------
SS--------------------------------SS--------------------------------------------
----S-S-----------------------------S-----------------------------S-------------
---------------------------S------------S----------------------S-------------S--
--------------------------------------S-----S----------S------------------------
----------------S---------------------------------------------------------------
-------S----------S-----------S-----------SS------------------------------------
------------------------------------------------------------------------S-------
---------------------------------------------S----------------------S----S------
---------------------------------------------------------------------------S----
-----------------------------------------S-----S--------------------------------
-------------S-------S------------------SSS-------------S-S---S---------S-----S-
-------S--------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_164
--------------------------------------------------------------------------------
----------------------------------------------------------------CTCACCGGAGATCACT
TGGG----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------------------
>reverse_1517
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------------------------------------------------------------------AGAG
GAACAAGGTGAATGGGC---------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------------------
>forward_245
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------TTCCGTCGGTCATCA
TGCTT---------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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------------------------------------------------------------
>reverse_2195
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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----------------------------------GGGCTGTTAATGGACTTCGT--------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------
>forward_1499
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------TCAAAGGATCCACGCTTGCA---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------
>reverse_3403
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------ACCTAGATTGCACACACGCA------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------
