>input_sequence_43142
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--------------------------------------------------------------------------CCACTG
CCAAAAGTCAACCCCATCCCACGCCGGCCACCACCACGCGTCCTACCTAGCTCAGCT----CACTTCGTCAAACCTCTCC
AAGCTCAAATCCCTGGTCGCCGTTCATGTGCGGCCTGCTTCTGCGCATGGAGCACCTCAACGACTGGGACCTGCAGGCCG
TCGTCAGGAGCTGCGCCACCTTCTCCTCCTCCCACCACCCCCAGGAAGAGGACCGCGCCGGTCCTCCTCCGGGTCCCGCC
GCGGCGCCGCCGGCCGACACGCCGGTAAAGCGGGAGCCGCGCGACGTGGTCCGGCCCGCATCGGCGGCCAAGGACGCGTC
GTCGCTGTACGGCCTGGAGTACCTGGACTTGGATCACAAGCCCTTCCTGCTGTCGGCGCCGTCGTCGCAGTCGTGGGCGG
CGGTGGATGACCGCCACGAGATGATGATCTCTTTCCCCGCGGCGGCGTCCACGTCCGGCGTGCGGCCGCGGGTGCCGCCT
GGCCGGAAGCCCGGCATACGAAGCAGCACCCCGCGCCCGAAAAGAAGGTACGTAGTATA---TACCA--AGTTGATTTGT
GCACCCGGCCCGATCGCTTATGCAGCGCGATTTGGATCGGACAAGCTTGCAGCCTGCTGATTGTGATTTTGTTTGGTGGT
GGTGGTGGTGGTGGTGATGGTGAGCAGCAAGAAGAGCCAGCTGAAGAAGGTGGTGTGCGAGGTGCCGGTGGCCGACGGCG
GCGTCTCCTCCGACCTTTGGGCGTGGCGCAAGTACGGTCAAAAGCCCATCAAAGGCTCGCCTTATCCCCGGTAATTA---
ACTATAACCACCTCCACCGGCCCGTTTCCACGCGTTACTGTCGTCTCGTCGATGCACTAGCTA--CTCCGTGCATAGCCA
GATAGCCTTGAGTCCAGTCACTACCGCTTAGTCCAGTCACTACGGCTTAGTACCTTCTATTAATAGATTCGCAATAACTG
ATTTCTCATGCGATGAACATTTACACGGATTTCATCAAACATTTGGTCATTTGG----ATATACTCCTAATTACGAACAG
TATAGTA---GTAGTACATATGA-------CCTGATGCTTAGAACTTGCTAGTACTAGATTTTAGCCGCGCACCTTGCCA
ATTTGGCATCAAGTTTTGGCCAATCACACACCACCTCTACTTTTGCAGTAC-AACACGCATGCTCCGGAAGGTACTCAAG
TACTCCTCCGTACCAGTACCTATCTTAATTACTAGTAGTCGCTAA--------TCCTGGTCTGCATACTCCTAAACTTTG
TTAGCTTTGTGGTCACAGGGGATACTACAAGTGTAGCAGCATGAAGGGCTGCATGGCCCGGAAACTGGTGGAGCGCAGCC
CGGCCAAGCCCGGTGTGCTCGTCATCACCTACATGGCCGACCACTGCCACCCGGTGCCGACGCAGATCAACGCACTCGCC
GGCACCACCCGCCACAAGACCACCCCTGCGGACGGCCACGCGA---CGACG------------CCCAAAAGCCACGGCGA
CGCCCACGAGGCGGTGAGGTGCGAGGACGAAAGCAACGAGATGTCGTCGATGGCGGTGGACGGTACCACTGAGGAGGCGG
CGGGGGATGACGGCGGCGAGTTCTGGCCAACGGAGCTGGACCTGGACGAGTTGTTGGCGCCTGTGGATGGCGATCTGGAT
CATGTCTTCGACGAGGATGGCGCCCTGGGACGACGGCTCTCGCTATAGCTGGAGAGGAAATTTGTAGCTATAACCTATAG
CCACCACCGATTGACAACTTTTTTGCCCCTTTGTTCACCTATTTGCGAAGGAGGGGTCACGCAGCAGGCAAGAAGCCAT-
---ATGCGTTTGATGTGTG-------------------------------------------------------------
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>chr3B_1_TraesCS3B01G255400
TTCATGTGCTTTATAACCAAACATGTTTATTTTTTGAACGATTCCAACCCATTCATAACCACCCTTATAACCAAACGCAC
CCTTAGTTATCCATATCTTCCAATTGTCCATCGCTCTCGTGATGCAAAATTTGCGCGTGGGCGTCCGTCCCAAAAATTAA
TGGG-----GCGGAGCGGAGCGCGGCGCGTGCAGCCCGGGCCCC-GCGTGCGCGCACTAGGCAAGACCAGTACTCCTAGT
AGGCAACTAGAAAGAG----CAGCGCGCGGGCGCGGCGGCAACAGCGGTGGAGCGCGGCGAGCACGACCACCGGCTTCCC
GAGGGA-GGGCCGATCCCTCTCGCGTCCTTGTCGTGGCCAAAAGACTCTCCTCCACTCCACCGTCGCTTTGTCACTTATC
CCCGCGCCGATTGGAGCCC-ACGCGATA-CCCCGGACGGGTTCAGAGATCTGACGCATATGGCCGAGATTTTGTGCCACG
C------CTCTCTCTCTGCCCTTTGACATTTACACAAGGTCAGATCCAGAATAACCGACGCCTGACGC----AAGTGGCT
AGTCAAGCGCAGCCAATAATATAGGATCGGCATAAAGAGTCAAGCAAGCGC-AAAGTTAATTCGCGGCTTCCATATTCCC
CT-----GCGGCCCCTTTAATGACGCCAGAGAGTTCCATCCAAAGATTCCACCCTTTTCTTCTAGTCTAGCTTGCCCTCT
CTCCCTTTTGACATTTGGAGCAAAGTCAAAGAAAACAATAGGGAGGAGAAGCCAAGGCCCTTTTGACAAGTGCATAGAGC
CCCGAACAATGGAGAGCTTCCATATACAATGGGGAGTAGCTGATCATTTCAAATCCGGACGCGATCTTCTCTCTTATCCC
CTGCTGCTGCTGCTGCGAAGCGCGCGCCGTGCCCACCACTTGCCTTTGACTTTACAGGGATCGAGTCATCCTCCTCGTGC
CACTCCAG--TACGCGTCTCG---AGTATGTACAGGCGTACGCGTATATATTTGCGCTTCCCCGGACCGGCCTGCCACTG
CCAAAAGTCAACCCCATCCCACGCCGGCCACCACCACGCGTCCTACCTAGCTCAGCT----CACTTCGTCAAACCTCTCC
AAGCTCAAATCCCTGGTCGCCGTTCATGTGCGGCCTGCTTCTGCGCATGGAGCACCTCAACGACTGGGACCTGCAGGCCG
TCGTCAGGAGCTGCGCCACCTTCTCCTCCTCCCACCACCCCCAGGAAGAGGACCGCGCCGGTCCTCCTCCGGGTCCCGCC
GCGGCGCCGCCGGCCGACACGCCGGTAAAGCGGGAGCCGCGCGACGTGGTCCGGCCCGCATCGGCGGCCAAGGACGCGTC
GTCGCTGTACGGCCTGGAGTACCTGGACTTGGATCACAAGCCCTTCCTGCTGTCGGCGCCGTCGTCGCAGTCGTGGGCGG
CGGTGGATGACCGCCACGAGATGATGATCTCTTTCCCCGCGGCGGCGTCCACGTCCGGCGTGCGGCCGCGGGTGCCGCCT
GGCCGGAAGCCCGGCATACGAAGCAGCACCCCGCGCCCGAAAAGAAGGTACGTAGTATA---TACCA--AGTTGATTTGT
GCACCCGGCCCGATCGCTTATGCAGCGCGATTTGGATCGGACAAGCTTGCAGCCTGCTGATTGTGATTTTGTTTGGTGGT
GGTGGTGGTGGTGGTGATGGTGAGCAGCAAGAAGAGCCAGCTGAAGAAGGTGGTGTGCGAGGTGCCGGTGGCCGACGGCG
GCGTCTCCTCCGACCTTTGGGCGTGGCGCAAGTACGGTCAAAAGCCCATCAAAGGCTCGCCTTATCCCCGGTAATTA---
ACTATAACCACCTCCACCGGCCCGTTTCCACGCGTTACTGTCGTCTCGTCGATGCACTAGCTA--CTCCGTGCATAGCCA
GATAGCCTTGAGTCCAGTCACTACCGCTTAGTCCAGTCACTACGGCTTAGTACCTTCTATTAATAGATTCGCAATAACTG
ATTTCTCATGCGATGAACATTTACACGGATTTCATCAAACATTTGGTCATTTGG----ATATACTCCTAATTACGAACAG
TATAGTA---GTAGTACATATGA-------CCTGATGCTTAGAACTTGCTAGTACTAGATTTTAGCCGCGCACCTTGCCA
ATTTGGCATCAAGTTTTGGCCAATCACACACCACCTCTACTTTTGCAGTAC-AACACGCATGCTCCGGAAGGTACTCAAG
TACTCCTCCGTACCAGTACCTATCTTAATTACTAGTAGTCGCTAA--------TCCTGGTCTGCATACTCCTAAACTTTG
TTAGCTTTGTGGTCACAGGGGATACTACAAGTGTAGCAGCATGAAGGGCTGCATGGCCCGGAAACTGGTGGAGCGCAGCC
CGGCCAAGCCCGGTGTGCTCGTCATCACCTACATGGCCGACCACTGCCACCCGGTGCCGACGCAGATCAACGCACTCGCC
GGCACCACCCGCCACAAGACCACCCCTGCGGACGGCCACGCGA---CGACG------------CCCAAAAGCCACGGCGA
CGCCCACGAGGCGGTGAGGTGCGAGGACGAAAGCAACGAGATGTCGTCGATGGCGGTGGACGGTACCACTGAGGAGGCGG
CGGGGGATGACGGCGGCGAGTTCTGGCCAACGGAGCTGGACCTGGACGAGTTGTTGGCGCCTGTGGATGGCGATCTGGAT
CATGTCTTCGACGAGGATGGCGCCCTGGGACGACGGCTCTCGCTATAGCTGGAGAGGAAATTTGTAGCTATAACCTATAG
CCACCACCGATTGACAACTTTTTTGCCCCTTTGTTCACCTATTTGCGAAGGAGGGGTCACGCAGCAGGCAAGAAGCCAT-
---ATGCGTTTGATGTGTGTGTTTGTGCTTGACCCCTCTCAACAAAATTGAT-GAAGATTTCTTATGTAGCTCCAGTTAA
CGGCTGCCTACAAAATACTCCCTCTGTCTCATATATATGAACGTTTTTGACGTTAATGTAGTGTCAAAAACATTCTTATA
TTATGGGACAGAGGAAGTAGTATATACATGTAATTGTTGTTCATCAAAGCCTTGACCACACCGAGCCAACAAGAGCTTGG
CACCTGG-CGTTTGATGTGCGTGATCCCTCTCGGCGGTTGCCTACTAAGAGCAACTCTAGCAGACCTCGCATCTCGCCGG
CCCGTAAAACGCGTTTGCAGTTCGCGCAAAATCATTTTTGCGGGCCAACGCGGGCTGGCACAGATGCAGACC-TTCCAAA
CGGATCCGTAGAAAAGTATATTCGCGGAATATGCTTTTTTTATGTGTCGGCTTCTGCGGGTTCTGCTCGGGCACCACCGC
GACGACCCGCAAACAGAAAAACTACAAATCTCACATTTGACATAGGATTTGGCAAAC-AAGTTCAAATTCAAACGACATA
AACAGTTTGCGCGCAAATAAAAGCATAGTTCATTACGCAAAAGAGGGCATGCA-AA-GGTTTGTGCCCATGTCCGGCATC
ATCTTGGGGGTCGATCTTCACTCCGCGCCATGGAGTCCATATTGAAGTTCATCGGCGCCACCGAATCCACCTCCGTCGCT
TGTTCCAACTCCCGCGCCGAAATCATCCACATTGCCACCATATGGAGCAGAGAAAACATCGCCGGAACTGGAACACGGAC
CGGCCGAGGCGACCATTCTCCTCTTCAAGATCTCTCTCCTTGCCATATCATGCCATGTTTTGGTGAGGTCGTCCGTGTCA
TTGCGGTTCATTGACATGATCTTGTTCTCTTCGGCGAGCAACAATGACATCGATTTGTTTTCAGAGGCGCGTGCTTTTCT
CTCCTCAATGGCAGCTTTGCGGAGCCCCTCTTCCTTGAGCATTTGCCATTTTTCTTGCTTCTCGT
>chr3D_77
----------------------------------------------------------------------------GCAC
ACTTAGTTATCCATATCTTCCAATTGTCCATCGCTCTCGTGATGCAAAATTTGCGCGTGGGCGTCCGTCCCAAAAATTAA
TGGGGCCGAGCGGAGCGGAGCGCGGCGCGTGCAGCCCGGGCCCCCGCGTGCGCGCACTAGGCTAGACCAGTAAGTAGGCA
ACTACACTAGAGAGAG----CAGC------GCGCGGCGGCAACAGCGGTGGAGCGCGGCGAGCACGACCACCGGCTTCCC
GAGGGA-GGGCCGATCCCTCTCGCGTCCTTGTCGTGGCCAAAAGACCCTCCTCCACTCCACCGTCGCTTTGCCACTTATC
CCCGCGCCGATTGGAGCCCCACGCGATA-CCCCGGACGGGTTCAGAGATCTGACGCATATGGCCGAGATTTTGTGCCACG
GCTCTCTCTCTCTCTCTGCCCTTTGACATTTACACAAGGTCAGATCCAGAATAACCGACGCCTGACGCGCCCAAGTGGCT
GGTCAAGCGCAGCCAATAATATAGGATCGGCATAAAGAGTCAAGCAAGCGC-AAAGTTAATTCGCGGCTTCCATATTCCC
CT-----GCGGCCCCTTTAATGACGCCACAGAGTTCCATCCAAAGATTCCACCCTTTTTCT----TGTACTACCTCCTCT
CTCCCTTTTGACATTTGGAGCAAAGTCAAAGAAAACAATAGGGAGGAGAAGCCAAGGCCCTTTTGACAAGTGCGTAGCAT
AGAGCCCCGCCCCAGTATACA--ATACAATGCGGAGTGGCTGATCATTTCAAATCCGGACGCGATCTTCTCTCTTATCCC
CTGC----GCTGCTGCGAAGCGCGCGCCGTGCCCACCACTTGCCTTTGACTTTACAGGGATCGAGTCATCCTCCTCGTGC
CACTCCAGGGTACGCGTCTGGAGTAGTATGTACAGGCGTACGCGTATATATTTGCGCTTCCCCGGACCGGCCTGCCAGTG
CCAAAAGTCAACCCCATCCCGCGCCGGCCACCACCACGCGTCCGTCCTACCT-AGCT----CACTTCGTCAAAGCTCTCC
AAGCTCAAATCCCTGGTCGCCGTTCATGTGCGGCCTGCTTCTGCGCATGGAGCACCTCAACGACTGGGACCTGCAGGCCG
TCGTCAGGAGCTGCGCCACCTT---CTCCTCCCGCCACCCCC------AGGACCGCGCCGGTCCTCCTCCGGGGACCGCC
GCGGCGCCGGTGGCGGAGACGACGGTCAAGCGGGAGCCGCGCGACGTGGCCCGGCCAGCAGCGGCGGCCAAGGACGCGTC
GTCGCTGTACGGCCTGGAGTACCTGGACTTGGATCACAAGCCCTTCTTGCTGTCGGCGCCGTCGTCGCAGTCGTGGGCGG
CGGTGGATGACCGCCACGAGATGATGATCTCTTTCCCCGCGGCGGCGTCCACGTCCGGCGTGCGGCCGCGGGTGCCGCCT
GGCCGGAAGCCCGGCATACGAAGCAGCACCCCACGCCCGAAAAGAAGGTACGTATATGCTCCTACCA--AGTTGATTTGT
GCACCCGGCCCGATCGCTTATGCAGCGCGATTTGGATCGGAGAAGCTTGCAGCCTGCTGATTGTGATTTTGTTTGGTGGT
GG---------TGGTGATGGTGAGCAGCAAGAAGAGCCAGCTGAAGAAGGTGGTGTGCGAGGTGCCGGTGGCCGACGGCG
GCGTCTCCTCCGACCTTTGGGCATGGCGAAAGTACGGTCAAAAGCCCATCAAAGGCTCGCCTTATCCCCGGTAATTAACT
ACTATAACCACTTCCACCGGCCCGTTTCCACGCGTTACTGTCGTCTCGTCGATGCACTAGCTA--CCCGGTGCAC-----
---AGCCTCGAGTCCAGTCACTACCGCT--------------------ACTACTTTCTGTTAATACATTCGCAATAACTG
ATTTCTCATACGATGAAGATTTACACTGATTTCATCAAACCTTTGGTCATTTGG----ATATACTCCTAATTACGAACAG
TATAGTA---GTAGTACATATGAGATATGACCTGGTGCTTAGAACTTGCTAGGAGTAGATTTTAGCCGCGCACCTTGCCA
ATTTGGCATCAAGTTTTGGCCAACCACACACCACATGTACTTTTGCAGTAC-AACACGCATGCTCCGGAAGGCACTCAAG
TACTCCTCCGTACCAGTACCTGTCTTAATTACTAGTAGTAGAAGCACCGCTAGTCCTGGTCTGCATACTCCTAAACTTTG
TTAGCTTTGTGGTGACAGGGGATACTACAAGTGTAGCAGCATGAAGGGGTGCATGGCCCGGAAACTGGTGGAGCGCAGCC
CGGCCAAGCCCGGTGTGCTCGTCATCACCTACATGGCCGACCACTGCCACCCGGTGCCGACGCAGATCAACGCGCTCGCC
GGCACCACCCGCCACAAGACCACCCCTGCCGAGGGCCACGCGC---CGACGACCACGACGTCGCCCAAGAGCCACGGCGA
TGCCCACGAGGCGGTGAGGTGCGACGACGAAAGCAACGAGACGTCGTCCATGGCTGTGGACGGCGCCACTGAGGACGCGG
CGGGGGATGACGGCGGCGAGTTCTGGCCGACGGAGCTGGACCTGGACGAGTTGTTGGCGCCCGTGGATGGCGATCTGGAT
CATGTCTTCGACGAGGACGACGCCCTGGGACGACGGCTCTCGCTATAGCTGGAGAGGAAATTTGTAGCTATAACCTATAG
GCACCACCGATTGACAACTTTTTTGCCCCTTTGTTCACCTATTTGCGAAGGAGGGGTCACGCAGCAGGCAAGAAGCCATG
TATATGCGTTTGATGTGTGT-TTTGTGCTTGATCCCTCTCAACAAAAT-GAT-GAAGATTTCTTATGTAGCTCCAGTCAA
CGGCTGCCTACTAACTACTAGTACAATAGTATTGAGTCTTG---------------------------------------
----------------------TATACATGTAATTATAGTTCATCAAAGCCTTGACCACACCGAGCCAACAAGTGCTTGG
CACCTGGTCGTTGGATGTGCGTGATACCTCTCGGCGGTTGCCT-------------------------------------
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>chr3A_77
----------------------------------------------------------------------------GCAC
ACTTAGTTATCCATATCTTCCAATTGTTCGTCGCTCTCGTGATGCAAAATTTGCGCGTGGGCGTCCGCCCCAAAAACTAA
TGGG-----GCCGAGCGGAGCGCGGCGCGTGCAGCCCGGGCCCCCGCGTGCGCGCACTAGGCTAGACCAGT-AGTAGGCA
ACTACACTAGAGAGAGAGAGCAGC------GCGCGGCAGCAACAGCGGTGGAGCGCGGCGAGCACGACCACCGGCTTCCC
GAGGGCCGGGCCGATCCCTCTCGCGTCCTTGTCGTGGCCAAAAGACCCTCCTCCACTCCACCGTCGCTTTGCCACTTATC
CCCGCGCCGATTGGAGCCCCACGCGATACCCCCGGACGGGTTCAGAGATCTGACGCATATGGCCGAGATTTTGTGCCACG
CCTCTCC--CTCTCTCTGCCCTTTGACATTTACACAAGGTCAGATCCAGAATAACCGACGCCTGACGCGCCCAAGTGGCT
GGTCAAGCGCAGCCAATAATATAGGATGGGCATAAAGAGTCAAGCAAGCTTTAAAGTTAATTCGCGGCTTCCATATTCCC
CTCCCCTGCGGCCCCTTTAATGACGCCACAGAGTTCCATCCAAAGATTCCACCCTTTTTCT----TCTAGCTTGCCCTCT
CTCCCTTTTGACATTTGGAGCAAAGTCAAAGAAAACAATAGGGAGGAGAAGCCAAGGCCCTATTGACAAGTGCATAGCAT
AGAGCCCCGCCCCAGTATACA--ATACAATGCCGAGTGGCTGATCATTTCAAATCCGGACGCGATCTTCTCCCTTATCCC
---------CTGCTGCGAAGCGCGCGCCGTGCCCACCACTTGCCTTTGACTTTACAGGGATCGAGTCATCCCCCTCGTGC
CACTCCAGAGTACGCGTCTGG---AGTATGTACAGGCGTACGCGTATATATTTGCGCTTCCCCGGACCGGCCTGCCAGTG
CCAAAAGTCAACCCCATCCCGCCCCGGCCACCACCACGCGTCCGTCCTACCT-AGCTAGCTCACTTCGTCAAACCTCTCC
AAGCTCAAATCCCCGGTCGCCGTTCATGTGCGGCCTGCTTCTGCGCATGGAGCACCTCAACGACTGGGACCTGCAGGCCG
TAGTCAGGAGCTGCGCCACCTTCTCCTCCTCCCGCCACCCCC------AGGACCGCGCCGGTCCTCCTCCGGGCACCGCC
GCGGCGCCGGTGCCGGAGACGCCGGTCAAGCGGGAGCCGCGCGACGTGGTCCGGCCCG------------------CGTC
GTCGCCGTACGGCCTCGAGTACCTGGACCTGGATCACAAGCCCTTCCTGCTGTCGGCGCCGTCGTCGCAGTCGTGGGCGG
CGGTGGACGACCGCCACGAGATGATGATCTCTTTCCCCGCGGCGGCGTCCACGTCCGGCGTGCGCCCGCGGGTGCCGCCT
GGCCGGAAGCCCGGCATGCGAAGCAGCACCCCACGCCCGAAAAGAAGGTACGTACTACTATATACCTATAGTTGATTTGT
GCACCCGGCCCGATCGCTTATGCAGCGCGATTTGGATCGGAGAAGCTTGCAGCCTGCTGATTGTGATTTTGTTTGGTGGT
GGTGATGGTGGCGGC------GAGCAGCAAGAAGAGCCAGCTGAAGAAGGTGGTGTGCGAGGTGCCGGTGGCCGACGGCG
GCGTCTCCTCCGACCTTTGGGCATGGCGAAAGTACGGTCAAAAGCCCATCAAGGGCTCGCCTTATCCCCGGTAATTAACT
ACTACAACCACTTCCACCGGCCCGTTTCCATGCGTTACTGTCGTCTCGTCGATGCACTAGCTCCCCCCCGTGCAC-----
---AGCCTTGAGACCAGTCACTACCGCT--------------------AGTACCTTCTGTTAATAGATTCGCAATAACTG
ATTTCTCACACGATGAACATTTACACGGATTTCATCAAACCTTTGGTCATTTGGATATATATACTCCTAATTACAAACAG
TATAGTACTGGTAGTACATATGA-------CCTGGTGCTTAGAACTTGCTAGGAGTAGATTTTAGCCGCGCATCTTGC-A
ATTTGGCATAAG--TTTTGGCCACTACACGTCACATGTACTTTTGCAGTACAAACACGCATGCTCCGGAAGGTACTCAAG
TACTCCTCCGTACCAGTACCTATCTTAATTACT---------------------------------ACTCCTAACCTTTG
TTAGCTTTGTGGTCACAGGGGATACTACAAGTGTAGCAGCATGAAGGGGTGCATGGCCCGGAAACTGGTGGAGCGCAGCC
CGGCCAAGCCCGGTGTGCTCGTCATCACCTACATGGCCGACCACTGCCACCCGGTGCCGACGCAGATCAACGCGCTCGCC
GGCACCACCCGCCACAAGACCACCCCTGCCGACGGCCACGCAGGGACGACGACCACGACGTCGCCCAAGAGCCACGGCGA
TGCCCACGAGGCGGTGAGGTGCGACGACGAAAGCAACGAGACGTCGTCCATGGCGGTGGACGGTGCCACTGAGGACGCGG
CGGGGGATGACGGCGGCGAGTTCTGGCCGACGGAGCTGGACCTGGACGAGTTGTTGGCGCCCGTGGATGGCGATCTGGAT
CATGTCTTCGACGAGGACGACGCCCTGGGACGACGGCTCTCGCTATAGCTGGAGAGGAAATTTGTAGCTATAACCTATAG
GCACCACCGATTGACAACTTTTTTGCCCCTGTGTTCACATATTTGCGAAGGAGGGGTCACGCAGCAGGCAAGAAGCCATG
TATATGCGTTTGATGTGTGT-TTTGTGCTTGATCCCTCTCAACAAAATTGATGGAAGATTTCTGATGTAGCTCCAGT---
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>chr1D_3065
GTTGC---------------------------------------------------------------------------
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-------------------------------------------TCTTAGAGCAACTCTAACCGACCCTGCATCCCGCCGG
CCCCTAAAACGAATTTGCAGTTCGCGCAAAATCACTTCTGCGGGCCAGCATAGGCTCGCACATATGCAGACC-CCCCAAA
CGGATCCGTAAAAAAGTATATTCGCGGAATATGCTTTTTT-ACGGGTCGGCTA-TGCGGGTTCTGCTCGGGCACCAGCGC
GACAACCCGCAAACAGAAAAACTGCAAATCTCGCATTTGACATAGGGTTTCACAAGC-AAGTTCAAATTCAAACGACATA
AACAGTTTGCGCGCAAATAAAAGCGAAGTTCATTACGCAAAAGAGGGCATGCA-AA-GGTTTGCGCCCATGTCCGGCATC
ATCTTGGGGGCCGATCTTCACTCCGCGCCATGGAGTCCATCTTGAAGTTCATCGGCGCCACCGAATCCACCTCCGTCGCT
TGTTCCAACTCCCGCACCGAAATCATCCACATTGCCACCATATGGAGCAGAGAAAACATCACCGGAACTGAAACACGGAC
CGGCCGAGGCGACCATTCTCCTCTTCAAGATCTCTCTCCTTGCCATATCATGCCATGTTTTGGTGACATCGTCCATGTCA
TTGCGGCTCATTGACATGATCTTGTTCTCTTCGGCGAGCAACAATGACATCGATTTGTTTTCTGAGGCGCGTGCTTTTCT
CTCCGCAATGGCAGGTTTGCGGAGCCCCTCTTCCTTGAGAATTTGCCATTTTTCTTGCTTTTC--
>chr6D_3070
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-----------------------------------------CTTCTAAGAGCAACTCTAGCAGACCCCGCAAAACGCCGG
CCCGCAAAACGCGTTTGCAGTTCGCGCAAAACCGCTTTTGCGGGTCGGCGCGGGCTGGCACAGATGCAGACC-CC-CAAA
CGGATCCGT-AAAAAGTATATTCGCGGAATATGCTTTTTT-ACGGGTCGGCTT-TGCGGGTTCTGCTCGGGCACCAGCGC
AATGACCCGCAAACAGAAAAACTGCAAATCTGAAATTTGTCATAGGGTTTCACAAAC-AAGTTCAAATTC-AATGACATA
AACAGTTTGCGCGCAAATAAAAGCGAAGTTCATTACGCAAAAGAGGGCATGCA-AA-GGTTTGCGCCCATGTCCGGCATC
ATCTTGGGGGTCGATCTTCACTCCGCGCCATGGAGTCCATCTTGAAGTTCATCGGTGCCACCGTAGCCATCTTCGTCGCT
TGTTCCAACTCCCGCACCGAAATCATCCACATTGCCACCATATGGAGCAGAGAAAACATCACCGGAACTGGCACACGGAC
CGGCCGAGGCGACCATTCTCCTCTTCAAGATCTCTCTCCCTGCCATATCATGCCATGTTTTGGTGACGTCGTCCATGTCA
TTGCGGTTCATTGACATGATCTTGTTCTCTTCGGCGAGCAACAATGACATCGATTTGTTTTCAGAGGCGCGTGCTTTTCT
CTCCTCAATGGCAGCTTTGCGCAGCCCCTCTTCCTTGAGCATTTGCCATTTTTCTTGCTTCTC--
>chr3B_3072
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-------------------------------------------ACTAAGAGGAACTCTAGCAGACCCCGCATCCCGCCGA
CCCGCAAAACTCATTTGCAGTTCGCGCAAAACCACTTTTGCGGGCCGGCGCGGGCTGGCACAGATGTAGACC-CCCCAAA
CGGATCCGTAAAAAAGTATATTCGCGGAATATGCTTTTTT-ACGGGTCGGCTTCTGCGGGTTCTGCTCGGGCACCACCGC
GAAGACTTGCAAACAGAAAAACTGCAAATCTCGCATTTGACATAGGGTTTGGCAAA--AAGTTCAAATTCAAACGACATA
AACAGTTTGGGCACAAATAAAAGCAAAGTTCATTACGCAAAATAGGGCATGCA-AAAGGTTTGTGCCCATGTCCAGCATC
ATTTTGGGGGTCGGTCTTCACTTCGCGCCATGGAGTCCATATTGAAGTTCATAGGCGCCACCGAATCCACCTCCGTCGCT
TGTTCCAACTCCCGCACCGAAATCATACACATTACCACCATATGGAGTAGAGAAAACATCACCGGAACTGGAACACGGAC
CGACCGAGGCTACCATTCTTCTCTTCAAGATCTCTCTCCTTGCCATATCATGCCATGTTTTGGTGAGGTCGTCCATGTCA
TTGCGGTTCATTGACATGATCTTGTTCTCTTCGGCGAGTAACAATGACATCGATTTGTTTTCGGAGGCGCGTGCTTTTCT
CTCCTCAATGGCAGCTTTGCGGAGCCCCTCTTCCTTGAGCATTTGCCATTTTTCTTGCTTCTC--
>chr4B_3072
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-------------------------------------------ACTTAGAGCAACTCTAGCGGACCCCGCATCCCGCTGG
CCTGCAAAACGCATTTGCAGTTCGCGCAAAACCACTTTTGCGGGCCGGCGCGGGCTGGCACAGATGCAGACC-CCTCAAA
CGGATCCGTCAAAAAGTATATTCGCGAAATATGATTTTTT-ACGGGTCGGCTTCTGCGGGTTCTGCTCGGGCACCACCGC
GACAACCCGCAAACATAAAAACTGTAAATCTCGCATTTGACATAGAGTTTGGCAAAC-AAGTTCAAATTCAAACGACATA
AACAATTTGCGCGCAAAAAAAAGCAAAGTTCATTACGCAAAAGAGGGCATGCA-AA-GGTTTGCGCCCATGGCCGGCATC
ATCTTGGGGTTCGATCTTCACTTCGCGCCATGGAGTCCATATTGAAGTTCATTGGCGCCACCGAATCCACCTCCATCGCT
TGTTCCAACTCCCGCACCGAGATCATCCACATTGCCACCATATGGAGCAGAGAAAACATCACCGGAACTGGAACACGGAC
CGACCGAAGCGACCATTCTCCTCTTCAAGATCTCTCTCCTTGCCATATCATGCCATGTTTTGGTGAGGTCGTCCATGTCA
TTGCTGTTCATTGACATGATCTTGTTCTCTTCGGCGAGCAACAATGACATCAATTTGTTTTCAGAGGCGCGTGCTTTTCT
CTCCTCAATGGCAGCTTTGCGGAGCCCCTCTTCCTTGAGCATTTGCCATTTTTCTTGCTTCTCGT
>chr6B_3073
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--------------------------------------------CTAAGAGCAACTCTAGCAGACCCTGCATCCCACTGG
CCCGCAAAACTCGTTTGCAGTTCGCGCAAAACCACTTTTGCGGGCCAGTGCGGGCTGGCACAGATGCAGACC-CCCCAAA
CGGATCCGTAAAAAAGTATGTTCGCGGAATATGCTTTTTT-ATGTGTCGGCTTCTGCGGGTTCTGCTCGGGCACCACCGC
GAAGACCCGCAAACAGAAAAACTGCAAATCTCACATTTGACATAGGGTTTGGCAAAT-AAGTTCAAATTCAAATGACATA
AACAGTTTGCGCGCAAATAAAAGCGAAGTTCATTACGCAAAAAAGGGCATGCAAAA-GGTTTGCGCCCATGTCCGGCATC
ATCTTGGGGGTCGATCTTCACTGCGCGCCATGGAGTCCATATTGAAGTTCATCGGCACCACCAAATCCACCTCCGTCGCT
TGTTCCAACTCGCGCACCGAAATCATCCACATTACCACCGTATGGAGCAGAGAAAACATCACCGGAACTGGAATACGGAC
CGGCTGAGGCTACCATTCTCCTCTTCAAGATCTCTCTCCTTGCCATATCATGCCATGTTTTGGTGAGGTTGTCCATGTCA
TTGCGGTTCATTGACATGATCTTGTTCTCTTCGGCAAGCAACAATGGCATCGATTTGTTTTCGGAGGCGCGTGCTTTTCT
GTCCTCAATGGCAGCTTTGCGGAGCCCCTCTTCCTTGAGCATTTACCATTTTTCTTGCTTTTC--
>chr4D_3073
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--------------------------------------------CTAAGAGAAACTCTAGCAGACCCCGCAAAACGCCGG
CCCGCAAAACGCGTTTGCAATTCGCGCAAAACCGCTTTTGCGGGCCGGCGCGGGCTCGCACAGATGCAGACC-CCCCAAA
CGGATCCGTAAAAAAGTATATTCGCAGAATATGCTTTTTT-ACGGGTCGGCTA-TGCGGGTTCTGCTCGGGCACCAGCGC
AACGACTCGCAAACAGAAAAACTGCAAATCTGGAATTTGACATAGGGTTTCACAAAC-AAGTTCAAATTCAAATGACATA
AACAGTTTGCGCGCAAATAAAAGCGAAGTTCATTACGCAAAAGAGGGCATGCA-AA-GGTTTGCGCCCATGTCCGGCATC
ATCTTGGGGGTCGATCTTCACTCCGCGCCATGGAGTCCATCTTGAAGTTCATCGGCGCCACCGTAGCCACCTCCGTCGCT
TGTTCCAACTCCCGCACCGAAATCATCCACATTGCCACCATATGGAGCAGAGAAAACATCACCGGAACTGGAACACGGAC
CGGCCGAGGCGACCATTCTCCTCTTCAAGATCTCTCTCCTTGCCATATCAGGCCATGTTTTGGTGACGTCGTCCATGTCA
TTGCGGTTCATTGACATGATCTTGTTCTCTTCGGCGAGCAACAATGACATCGATTTGTTTTTAGAGGCGCGTGCTTTTCT
CTCCTCAATGGCAGCTTTGCGGAGCCCCTCTTCCTTGAGCATTTGCCATTTTTCTTGCTTCTC--
>chr3B_3076
--------------------------------------------------------------------------------
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-----------------------------------------------AGAGCAACTCTAGCAGACCCCGCATCCCGCCGG
CCCGCAAAACTCGTTTGCAGTTCGCGCAAAACCACTTTTGTGGGCCGGCGCGGGCTGGCACAGATGCAGACC-CCCCAAA
CGGATCCGTAAAAAAGTATATTCGCGGAATATGCTTTTTT-ACGGGTCGGCTTCTGCGGGTTCTGCTCGGGCACCACCAC
GAAGACCCGCAAACAGAAAAACTGCAAATCTCGCATTTGACATAGGGTTTGGC-AAA-AAGTTCAAATTCAAACGACATA
AACAGTTTGCGCGCAAATAAAAGCGAAGTTCATTACGCAAAAGAGGGCATGCAAAA-GGTTTGCGCCCATGTCCGGCATC
ATCTTGGAGGTCGATCTTCACTCCGCGCCATGGAGTCCATATTGAAGTTCATCGGCGCCACCGAATCCACCTTCGTCGCT
TGTTCCAACTCCCGCACCGAAATCATCCACATTGCCACCATATGGAGCAGAGAAAACATCACCAGAACTGGAACACGGAC
CGGCCGAGGCTACCATTCTCCTCTTCAAGATCTCTCTCCTTGCCATATCATGCCATGTTTTGGTGAGGTCGTCCATGTCA
TTGCGGTTCATTGACATGATCTTGTTCTCTTCGGCAAGCAACAATGACATCGATTTGTTTTCAGAGGCGTGTGCTTTTCT
CTCCTCAATGGCAGCTTTGCGGAGCCCCTCTTCCTTGAGCATTTGCCATTTTTCTTGCTTCTC--
>chr1D_3076
--------------------------------------------------------------------------------
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-----------------------------------------------AGAGCAACTCTAGCAGACCCCGCATTCCGCCGG
CCCACAAAACGCATTTGCAGTTCGCGCAAAACCGCTTTTGCGAACCGACACGGGCTGGCACAGATGCAGACCCCCCCAAA
CGGACCCGTAAAAAATTATATTCGCGGAATATGACTTTTT-ACGGGTCGGCTA-TGCGGGTTCTGCTCGGGCACCAGCGC
GACGACCCGCGAAAAGAAAAACTACAAATCTCGCATTTGACATAGGGTTTCACAAAC-AAGTTCAAATTCAAACGACATA
AACAGTTTGCGCGCAAATAAAAGCGAAGTTCATTACGCAAAAGAGGGCATGCAAA--GGTTTGCGCCCATGTCCGGCATC
ATCTTGGGGGTCGATCTTCACTCCGCGCCATGGAGTCCATCTTGAAGTTCATCGGCGCCACCGAATCCACCTCCGTCGCT
TGTTCCAGCTCCCGCACCGAAATCATCCACATTGCCACCATATGGAGCAGAGAAAACATCACCGGAACTGGAACACGGAC
AGGCCGAGGCGACCATTCTTCTCTTCAAGATCTCTCTCCTTGCCATATCATGCCATGTTTTGGTGACGTCGTCCATGTCA
TTGCGGTTCATTGACATGATCTTGTTCTCTTCGGCGAGCAACAATGACATCGATTTGTTTTCAAAGGCGCGTGCTTTTAT
CTCCTCAATGGCAGCTTTGCGGAGCCCCTCTTCCTTGAGCATTTGCCATTTTTCTTGCTTCTC--
>chr2B_3093
CCTGC---------------------------------------------------------------------------
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----------------------------------------------------------------------ATCCCGCCAG
CCCGCAAAACGCGTTTGCAGTTTGCGCAAAACCACTTTTGCGGGCCGACGCGGGCTGGCACAGATGCAAACC-GCCCAAA
CGGATCTGTAAAAAAGTATATTTACGGAATATGTTTTTTT-ACGGGTCGGCTTCTGCGGGTTCTTCTCGGGCTCCACCGC
GACGACCCGCAAACAGAAAAACTGCAAATCTCGCATTTGACATAGGGTTTGGC-AAACAAGTTCAAATTCAAACGACATA
AACAATTTGCGCGCAAATAAAAGCAAAGTTCATTACGCAAAAGAGGGCATGCAAA--GGTTTGCGCCCATGTTCGGAATC
ATCTTGGGGGTCCATCTTCACTCCGCGCCATGGAGTCCATATTGAAGTTCATCGGCGCCACCGAATCCACATCCGTTGCT
TGTTCCAACTCCCGCACCGAAATCATCCACATTGCCACCATATGGAGCAGAGAAAACATCACCGGAACTGGAACACGGAC
CAGCCGAGGCGACCATTCTCCTCTTCAAGATCTCTCTCCTTGCCATATCATGCCATGTTTTGGTGAGGTCGTCCATGTCA
TTGCGGTTCATTAACATGATCTTGTTCTCCTCGGCGAGTAACAATGACATCAATTTGTTTTCAGAGGCGCGTGCTTTTCT
CTCCTCAATGGCAGCTTTGTGGAGCCCCTCTTCCTTGAGCATTTGCCATTTTTCTTGCTTCTC--
>SNPs
S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----
S-------------------------------------------------------------------------------
--------------------------------------------------------------S---------SSSSSSSS
-SSSS------S------------SSSSSS--------------------------------------------------
----------------------------------------------S------------------------S--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
S-------------------------------------------------------------------------------
----------------------------S-----------------------------SS-SSSS---------------
-----------------------------------------------------------------------------SSS
SSS-SS-SSSSSSSSSS-S-SSS--------S-----S------------------------------------------
----SSSS------------------------------------------------------------------------
-------------------S---------------------------------------------------------S--
--------------------S----------------------SS----S--S---------------------------
--------------------------------------------------------------------------------
---------------------------------S--------SSSSSS-------------------------SS-----
---------SS---S--S--------S---------------------------------S-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------S---------------------S--SS---------------------
-----------------------------------------S--------------------------------------
----S---------------------------------------------------------------------------
----------------------S-----S---------------------------------------------------
-----------S------------------------------------------------------S-------SSSSSS
SSS-------------------------SSSSSSSSSSSSSSSSSSSS----------S---------------------
---------S------------------------------S---------------------------------------
----------------------------------S-----------------S-S-------------------------
-----------------------S----------S-S-------------------------------------------
---------------------------------------S-SSSS-----------------------------------
------------------------------------------------S-------------------------------
-------------------------------------------------------------------------S------
-----------------------------S------------S-------------------------S-----------
S-----------------------S----------------S------S---------------S----------S----
----------------------------S--------------------------------S------------------
-----------------S-S------------------------------------------------------------
S-------------------------------------------------------------------------------
--------------------S-----------S--------------------------------------------S--
-----------S--S----SSSS-SS-SSS--SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSS-------------S-S-----------------------------------S------
------------S------------S----------------------------------------S------S------
----------------------------------S--------------------------------------SS-----
----------S-----------------------------S---------------------------------------
----------------------------------------------S---------------------------------
-------------------------S------------------------------------------------------
--------------------------------------------------------------------------------
---------------S--------------------------------------------S-------------------
--------------------------------------------------------------------------S-----
--------------------------------------------------------------------------------
-----------------------------------------------------------------
>forward_819
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------------------------------------C
CCCGAACAATGGAGAGCTT-------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------------------------
>reverse_1907
--------------------------------------------------------------------------------
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------------------------------------------------------------------TCCGTGCATAGCCA
GATAGC--------------------------------------------------------------------------
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-----------------------------------------------------------------
>forward_888
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------TCTCTCTTATCCC
CTGCTGCT------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------------------------
>reverse_2702
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------------------TGTGGATGGCGATCTGGAT
C-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------------------------------------------------------------
>forward_2369
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------AGTGTAGCAGCATGAAGGGC-------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------
>reverse_3321
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------TATGTGTCGGCTTCTGCGG---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------
