>input_sequence_43132
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--------------------ATGTCAGCGCTGTTTGCTTGGCTCTGGACATGGAATCCGGATCAGATTCCCCGAGCCTCA
GACTTCAATGTGATCCATCGTCCTGATATTGTTTGCCCACGGGACTCGTTGCCGGAGGGGGTGCCGGCGGAGGAGGGGAA
GGAAGGCCCCCACTTCCCGGTCCTCATCCACTTGGACGTCGTCAAGGATTACACGCCACTGCCACCATCCGCGAGCCCAG
CCGAGGAATGGCCTCGCACATACACACACAAGGGCTGGAGGATGGGTGTGAAGGATGGAGAGGGCAGAACCAGAGCTGCC
TCGACGGCCAGCCCCTACAACGCTGGCCGGCGCAGCGACGACGACCATGACGACGGATTCGGTGGTGGCCGCAGGAAGAG
GGGTAAGCGAGGAGGTGCGCGCAGAAGCTTCTGGCAGGGGGTGCGGGACCAGGCACAATGCAGGGATACTGCTGCCTATG
ATCCGGCTCCCCGTGGCCGGCGCCGCCATGTTGAGGGCATGGCTCCTTCCCAGGTCGCCATTTGTCTCCCGTTAGAGGTG
CGGACCCAGGCCCCGGCTGATTCCCAACGCCGGCAAAGCCCGACAGCACAAGACAGGGTGTATGTCACCCCATCGCTGCA
GGTGGTCCAGGGAGAGCGCGGCTCCGGTTCTAGGGAACAGGCCGACCAGCAGCAGCTCACAGATGAGGAGATCAATGACG
CAGAGCAGCCAAACCCTGACCAGCAGCAACGCTCGGATGAGGAGCTCAGTGACGCCCATAGTCTGCCTGCTTTGTCGGCT
GGACAGGTTTTGCCACCTCAGGAGCTCACGGACCGTGCACGGAGGCTCTTTGTCCTTGTGATGGAGAAGGAGGCTGGGGG
CATACAAGACTGGGGCCTTGCACCCACCCCTGGTGGTCTGATGCAGCTCTTCTCCCCACCCCGGCAGAAGCAGCTCGCCC
CTTGGGCCAGCAATGTGGTTACTGATGCAGCCTCCATTACCGCAGCGGGGGTGACCTCCTTCTTCCAGCAACGTACCAGC
TATGAGTTGCCTCCCATCCCGCCTTCTTTGGACGTTTGCAACCTCTCTGCATGGGATCTGCCTCCCCCAGGGCCGCCAGC
GATGGCCTGGGACCTGCCTATTTTTTCCCAGAATCCGTGCTGGCTACCAAGCTGGGCAGAGATGCCTATGACGAACCCAA
GCTGGGCCTCTGGACCTGAGGTGGTGTTTGGGCCAGGGATTCAGGCTTCACAGCAGGACCATCCCCCTCCTGGACTGGAC
TGCGCTGATAGACACAGGGATGCGGGATCATTTGGCCAACAATCCATCGAGGAGCAGCGAGCGAGACGAGCACTGGCGGA
GGCAAACCTCTCTGGTCCAGGCTTGGTTTCAGCGATCACGGCAAGGATGGCTGCCTTACACCTGGATGAGCAGAGGCAGT
TCATTGGAAAAATTGCTGCCCTCTTGTCCTCCTCCATCCTAGGCCCCCCTCCAGTTTCTGCTCCCTCACCTCGCAAGCTG
AAGAACCGCCTACTGGGGGTGGTCAGGGCCTCGCGGCAGAGTTCCAGGCTCCAGAGGATGAACTCCACCCTATCTTCTTC
AAGAAGGTCCCAAGCAACGATCAGCGTCAAGCTGGGTTTCATCGAACGCCCTGAAGATTTCAACGATGACACTCTACTGG
CGTACCTTCAGTTCTTCCGCGCGCCCATGCCACCAGAGAACGTCACCAAGCTGGCGGAGATCGCCGGCTTGACGTCCCCA
TCTCAGCTACAGCTTCCGGACGCCGAGCTGCAAGCGATCCTGGAGGAGCTCGCAGGCCAGGCTGCTTGA-----------
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>chr1B_1_TraesCS1B01G053300
TTGTTGTGCGTTGAAAAAAAAAATACACACTAATTAACACGTCGAGCGAGGAGAAAAGACAAGCTTGCAACATTGGCTTA
AGTAAGCATTAATTTCTACCTTGGTACCTGTAATATGGGTTTGTGGCCTTGTATACAAAAATGGAGGGAGTATATTTTTT
GGAGTGTGTTTTGTGAACAAAGTGCCTCTGATGTTTGTAGTGTTTGGAACTTCTGAAATAGATTCAAGTCATTTGAACTA
GCTAATAGCTAAGATTAATAACTAATACCTGAGATTTCACAGATTTCCTAGACTATACATATTTCTATTTGTTACATTTT
TTCCGTTATGTAAGCCAACTTAGCTTAGAGATCTATTTTCTCAGAATCACAAG-AATTTGTCCCCCGCCATATTTTCTTC
ATTTCTGTTTATCCACTACCACAGCTGAACCTAAGCAAACACACAGCATACATCAATCATGGTATAATTTTTTGAAAAAT
AACATAGCATGAAAAACGGAACGTAACTG------------------------------------GACTGAGATTGGCTA
GTATTCACACAAGATTTGCCCCTCTCTTTCTTCTCGAGCTATGTTTTAAATTTGAGGTTTTTAATCTTGTAACGTTTGCA
GAAATATGTATTTTCTACATCCATGATTTATTTTCCGGAATTTTTGAACACTTGTAAATAGTGCCCCA------------
-GATATGTTCTCGGCACCCGAAATACGCTCTCCAGAAAAAGATCATGATCCTTCTTTTTCCTTTACGACGGATTAGGGTC
CACCTCACGTCATTACAGCGAAGTGGAATTATGTGCAGTATTTACGAGGTGTCGACAGCCCCACGGGTTAACCGAAACAG
T-------AGTAATAATCCAAGGCGAAAACTAATTTTTTGCCCCACCAATGGATAAAGAAGGCCAGTGAGATTTGACAAA
CAG---AAATCACTGTCATACACAACCTGTTGCCGGTTGCCCTCACGAGTGATCCAAACTTGCTTTTTGAGAAAGAGTTA
AGTCACTTTCAGAGAGGAACATGTCAGCGCTGTTTGCTTGGCTCTGGACATGGAATCCGGATCAGATTCCCCGAGCCTCA
GACTTCAATGTGATCCATCGTCCTGATATTGTTTGCCCACGGGACTCGTTGCCGGAGGGGGTGCCGGCGGAGGAGGGGAA
GGAAGGCCCCCACTTCCCGGTCCTCATCCACTTGGACGTCGTCAAGGATTACACGCCACTGCCACCATCCGCGAGCCCAG
CCGAGGAATGGCCTCGCACATACACACACAAGGGCTGGAGGATGGGTGTGAAGGATGGAGAGGGCAGAACCAGAGCTGCC
TCGACGGCCAGCCCCTACAACGCTGGCCGGCGCAGCGACGACGACCATGACGACGGATTCGGTGGTGGCCGCAGGAAGAG
GGGTAAGCGAGGAGGTGCGCGCAGAAGCTTCTGGCAGGGGGTGCGGGACCAGGCACAATGCAGGGATACTGCTGCCTATG
ATCCGGCTCCCCGTGGCCGGCGCCGCCATGTTGAGGGCATGGCTCCTTCCCAGGTCGCCATTTGTCTCCCGTTAGAGGTG
CGGACCCAGGCCCCGGCTGATTCCCAACGCCGGCAAAGCCCGACAGCACAAGACAGGGTGTATGTCACCCCATCGCTGCA
GGTGGTCCAGGGAGAGCGCGGCTCCGGTTCTAGGGAACAGGCCGACCAGCAGCAGCTCACAGATGAGGAGATCAATGACG
CAGAGCAGCCAAACCCTGACCAGCAGCAACGCTCGGATGAGGAGCTCAGTGACGCCCATAGTCTGCCTGCTTTGTCGGCT
GGACAGGTTTTGCCACCTCAGGAGCTCACGGACCGTGCACGGAGGCTCTTTGTCCTTGTGATGGAGAAGGAGGCTGGGGG
CATACAAGACTGGGGCCTTGCACCCACCCCTGGTGGTCTGATGCAGCTCTTCTCCCCACCCCGGCAGAAGCAGCTCGCCC
CTTGGGCCAGCAATGTGGTTACTGATGCAGCCTCCATTACCGCAGCGGGGGTGACCTCCTTCTTCCAGCAACGTACCAGC
TATGAGTTGCCTCCCATCCCGCCTTCTTTGGACGTTTGCAACCTCTCTGCATGGGATCTGCCTCCCCCAGGGCCGCCAGC
GATGGCCTGGGACCTGCCTATTTTTTCCCAGAATCCGTGCTGGCTACCAAGCTGGGCAGAGATGCCTATGACGAACCCAA
GCTGGGCCTCTGGACCTGAGGTGGTGTTTGGGCCAGGGATTCAGGCTTCACAGCAGGACCATCCCCCTCCTGGACTGGAC
TGCGCTGATAGACACAGGGATGCGGGATCATTTGGCCAACAATCCATCGAGGAGCAGCGAGCGAGACGAGCACTGGCGGA
GGCAAACCTCTCTGGTCCAGGCTTGGTTTCAGCGATCACGGCAAGGATGGCTGCCTTACACCTGGATGAGCAGAGGCAGT
TCATTGGAAAAATTGCTGCCCTCTTGTCCTCCTCCATCCTAGGCCCCCCTCCAGTTTCTGCTCCCTCACCTCGCAAGCTG
AAGAACCGCCTACTGGGGGTGGTCAGGGCCTCGCGGCAGAGTTCCAGGCTCCAGAGGATGAACTCCACCCTATCTTCTTC
AAGAAGGTCCCAAGCAACGATCAGCGTCAAGCTGGGTTTCATCGAACGCCCTGAAGATTTCAACGATGACACTCTACTGG
CGTACCTTCAGTTCTTCCGCGCGCCCATGCCACCAGAGAACGTCACCAAGCTGGCGGAGATCGCCGGCTTGACGTCCCCA
TCTCAGCTACAGCTTCCGGACGCCGAGCTGCAAGCGATCCTGGAGGAGCTCGCAGGCCAGGCTGCTTGAACTTCCTTCGT
TTGACCATGCTTGCGCTGTCGCATCTTAGTTTCCAATGATTTGTTGTCCTCTGAACCTTAAGTTTACTGTTGGGTGCCGT
CGGGCTGCCATGTATCCTG-------------------------CTTGATCTTGTGGACCTTTGTGTTTTCTTATGATTA
GTTCTCTATCCATTGCTAGCTGGAATGTGCGGGGGTTGAATAATAGGGCGAGGCGGGCTGCGGTACGCGCCTTACTTGAT
CAGCTCTCTTGCTCGATCGTCTGTCTGCAGGAATCAAAGCTTGACCAGGCTGCTGATGCTGACATCACTGAAATAGCCGG
GCCTGTGTTTGATAAGCATGTCATGCTTCCAGCCGACGTCACTCGTGGTGGAGTGCTGCTCTGTTGGCGCTCGGACCGCT
TCTGTGTGTCTGCTGCCGATGTGCGCAGGTTCTCGATAACAGCCACGTTCACTCCAACTGGAGCCCAGGGACATACGGCG
TCTTGGACGCTAACCACGGTTTACGGCCCTCACGACTACGAGCGAAAGCAAGCTTTCTTGAATGAGCTTGCCGATATTCA
TAACACCGTGCAGTGGCCATGGTTAATTATTGGGGATTTCGATCTGATCATGGATCCAAGAGATAAAAATAACAACCGAG
TCTGTCGTCGATGGATGAACAAGTTTCGTTGAACTCTTAATAGATCAAGTCTCCATGAATTAGCCTTGATTGGCAGACGA
TACACGTGGAGTAATGAACAAGACCCCCCAACGCTAGTTAGACTAGACCGTGCATTCTGCAATGTTGATTGGGAGCTCAT
GTTCCCGGCTGCTAAACTGCTTCCACAAGCTTCGTCGATCTCGGACCACTGTCCGCTACTGCTCCGGAACGACGAGATAA
TCAAAACAAACAAAAGATTCAGATTTGAAGCATATTGGCAATATGTCCAGGGTTTTAAGGAGGTCGTCCAGCAATCCTGG
GCTCAGCCGGTCAGTGACAGATCTCCCATCACAAGTTTTAATACGAAGCTTTGG
>chr1D_151
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----------------------------------------------------------------------TATATTTTTT
GGGGTGTGTTT-GTGAACACAGTGCCTCTGATCTTTGTAGTGTTCGGAACTTCCAAAATAAATTCAAGTCATTCGAACTA
GCTAATAGCTAAGATTAATAACTAATATCTGAGATTTTACAGATTTCCTATACTATGCCTATTTCTATTTGTTACATCTT
TTCCGTTATGTAAGCCCACTTAGCTCAGAGGTCTATTTTCTCACAATCACAAGAAATTTGTCCCCCGCCATATTTTCTTC
CTTTCTGTTTATCCACTACCACAGCTGAACCTAAA-----------CATACATCTATCATGGCATAAAA-TTTGAAACAT
AACATAGCATGAAAAACGGAACGAATCCAGTGCTAACAAGGAAAAATAGGACAAAATCACTGCGTGATTGGGATTAGCTA
GTATTCACACAAGATTTT--CCTCTTTTTTTTCTCGAGCTATGTTTTAAATTGAGATTTGA-AATCTTGTAATGTTTGCA
GAAATATGTATTTTCTACATCCATGATT--TTTTTCGGAATTTTTGAACACATGTAAATAGTGCACCCCAAATACGCACC
CGATATGTTCTTGGCACCCCAAATACGCTCTCCAGGAAAGGATCATGATCCTTCTTTTTTCTTTATGGCGGCTTAGGGTC
CATCTCACCTCATTACAGCAAAGTGGAATTACGTGCAATGTTTACGAGGCGTCGATAACCCCACGGGTTAACCGAAACCG
TCTACCCAAGTAATAATCCAGGGCAAAAACTATTCTTTTGCCCCGCCAATGGATTAAGAAGGCAATCGAAATTTGACAAA
CAACACAAATCATTGTCATGAACAAGCTGTTGCTGTCATGAGTGACAAACTG---AAACTTGCTTTTCGAGAAAGAGTTC
AGTCACTGTCAGAGA-----------------------------------------------------------------
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>chr5B_993
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------------AGAGGAACAGGTCAGCGCTGTTTGCTTGGCTCTGGACATGGAATCCGGATCAGATTCCCCGAGCCTCA
GACTTCAATTTGATCCATCGTCCTGATATTGTTCGCCCACGGGACTCGTTGCCGGAGGGGGTGCCGGCGGAGGAGGGGAA
GGAAGGCCCCCACTTCCCGGTCCTCATCCACTTGGACGTCGTCAAGGATTACACGCCACTGCCACCATCCGCGAGCCCAA
CCGAGGAATGGCCTCGCACATACACACACAAGGGTTGGAGGATGGGTGTGAAGGATGGAGAGGGCAGAACCAGAGCCGCC
TCGACGGCCAGCCCCTACAACGCTGGCCGGCGCAGCGACGACGACCATGACGACGGATTCGGTGGTGGCCGCAGGAAGAG
GGGTAAGCGAGGAGGTGCGCGCAGAAGCTTCTGGCAGGGGGTGCGGGACCAGGCACAATGCAGGGATACTGCTGCCTATG
CTCCGGCTCCCCGTGGCCGGCGCCGCCATGTTGAGGGCATGGCTCCTTCCCAGGTCGCCATTTGTCTCCCGTTAGAGGTA
CGGCCCCAGGCCCCGGCTGATTCCCAACGCCGGCAAAGCCCGGCAGCACAAGACAAGGTGTATGTCACCCCATCGCTGCA
GGTGGTCCAGGGAGAGCGCGGCTCCGGTTCTAGGGAACAGGCCGACCACCAGCAGCTCACAGATGAGGAGATCAATGACG
CAGAGCAGCCAAACCCTGACCAGCAGCAACGCTCGGATGAGGAGCTCAGTGACGCCCATAGTCTGCCTGCTTTGTCGGCT
GGACAGGTTTTGCCACCTCAGGAGCTCATGGACCGTGCACGGAGGCTCTCTGTCCTTGTGATGGAGAAGGAGGCTGGGGG
CATGCAAGACTGGGGCCTTGCACCCACCCCTGGTGGTCTGATGCAGCTCTTCTCCCCACCCCGGCAGAAGCAGCTCGCCC
CTTGGGCCAGCAATGTGGTTACTGATGCAGCCTCCATTACCGCAGCGGGGGTGACATCCTTCTTCCAGCAACGTACCAGC
TATGAGTTGCCTCCCCTCCCGCCTTCTTTGGACGTTTGCAACCTCTCTGCATGGGATCTGCCTCCCCCAGGGACGCCAGC
GATGGCCTGGGACCTACCTGTTTTTTCCCAGAATCCGTGCTGGCTACCAAGCTGGGCAGAGATGCCTATGACGAACCCAA
GCTGGGCCTCTGGACCTGAGGTGGTGTTAGGGCCAGGGATTCAGGCTTCACAGCAGGACCATCCCCCTCCTGGACTAGAC
TGCGCTGATAGACACAGGGATGCAAGATCATTTGTCCAACAATCCATCGAGGAGTAGCGAGCGAGACGAGCACTGGCGGA
GGCAAACCTCTCTGGTCCAGGCTTGGTTTCAGCGATCACGGCAAGGGTGGCTGCCTTACACCTGGATGAGCAGAGGCAGT
TCATTGGAAAAATTGCTACCCTCTCGTCCTCCTCCATCCTAGGCCCCCCTCCAGTTTCTGCTCCCTCACCTCGCAAGCTA
AAGAACCGCCTACTGGGGGTGGTCAGGGCCTCGCGGCAGAGTTCCAGGCTCCAGAGGATGAACTCCACCCTATCTTCTTC
AAGAAGGTCCCAAGCAACGATCAGCGTCAAGCTAGGTTTCATCAAACGCCCTGAAGATTTCAACGATGACACTCTACTGG
CGTACCTTCAGTTCTTCCGCGCGCCCATGCCACCGGAGAACGTCACCAAGCTGGCGGAGATCGCCGGCCTGACGTCCCCA
TCTCAGCTACAGCTTCCGGACGTCGAGCTGCAAGCGATCCTGGAGGAGCTCGCAGGCCAGGCTGCTTGAACTTCCTTCGT
TTGACCATGCCTGCGCTGTCGCATCTTAGTTTCCAATGATTTGTTGTCCTTTGAACCTTAAGTTTACTGTTGGGCGCCGT
CGGGCTGCCATGTATCCTGTTTGCCTGGGTTTCACCCACCCAGGCTTGATCTTGTGCACCTTTGTGTTTTCTTATGATTA
GTTCTCTATCCATTGCTAGCTGGAATGTGCGGGGGTTGAATAATAGGGCGAGGCAGGCTGCGGTACGCGCCTTACTTGAT
CAGCTCTCTTGCTCGATCGTCTGTCTGCAGGAATCAAAGCTTGACCAGGCTGCTGATGCTGACATCACTGAAATAGCCGG
GCCTGTGTTTGATAAGCATGTCATGCTTCCAGCCGACGTCACTCGTGGTGGAGTGCTGCTCTGTTGGCGCTCGGACCACT
TCTGTGTGTCTGCTGCCGATGTGCGCAGGTTCTCGATAACAGCCACGTTCACTCCAACTGGAGCCCAGGGACATACGGCG
TCTTGGACGCTAACCACGGTTTACGACCCTCACGACTACGAGCGAAAGCAAGCTTTCTTGAATGAGCTTGCCGATATTCA
TAACACCGTGCAGCGGCCATGGTTAATTATTGGGGATTTCAATCTGATCATGGATCCAAGAGATAAAAATAACAACCGAG
TCTGTCGTCGATGGATGAACAAGTTTCGTCGAACTCTTAATAGATCAAGTCTCCATGAATTAGCCTTGATTGGCAGACGA
TACACGTGGAGTAATGAACAAGACCCACCAACGCTAGTTAGACTAGACCGTGCATTCTACAATGTTGATTGGGAGCTCAT
GTTCCCGGCTGCTAAACTGCTTCCACAAGCTTCGTTGATCTCGGACCACTGTCCACTACTGCTCCAGAACGACGAGATAA
TCAAAACAAACAAAAGATTCAGATTTGAAGCATATTGGCAATATGTCCAGGGGTTTAAGGAGGTCGTCCAGCAATCCTGG
GCTCGGCCGGTCAGAGACAGATCTCCCATCACAAGTTTTAATACGAAGCTTTGG
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------
--S--------S-------S------------S-----------S--------SS-----S------------S------
---------------------------S---------S------------S-----S-S------------------S--
----------------S--------S----S------------S------------------------------------
S---------------------------------SSSSSSSSSSSS--------S-------S----SSS-------S--
-----------------------S-S-SS--------------------------------------S--S----S----
-----------------SSS-----S---S----------------------SSSSS--SSS----------S-------
----------------------------SS----S----------------S------------S--S------------
-----------S-------S---------------S---S-------------------S-----S-S---S--------
--S-----S----------S-----------S-----S-S---------S-----S-S--------------------S-
--------------------S---S-------S-S---------S---------S--------S-SS--S----------
--S---------S------SS----S-------S-SSSSSSS-S--S-SSSSSSS------------S-----------S
-------S-------------S----------------------------------------------------------
---------S-----------------------S----------------------------------------------
-------------------------------------------------------------------------------S
----------------------------------S-----------------------------------------S---
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S------------------------------------------------------------------------------S
---S--------------------------------------S------------S------------------------
------------------------------------------------S-------------------------------
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----------------------------S--------------------S------------------------------
---S----------------------------------------------------------------------------
-------------------------------------------------------S------------------------
---------------S--------------------------------------------------------S-------
---------------S---S------------------------------------------------------------
----------------------------S-----------------------------------------------S---
-----------------------SS---------S-------------------S-------------------------
----------------------------------------------S---------------------------------
-----------------S------S------------------------------------------------------S
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---------------------------------S---------S------------------------------------
----------------------------------S---------------------------------S-----------
----------------------S---------------------------------------------------------
----------S---------------------------------------S-----------------------S-----
--------------------------------------------------------S-----------------------
------------------------------------------------------S-------------------------
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-----------------------------------------------------------------------------S--
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-------------------------S------------------------------------------------------
-------------S--------------------------S---------------------------------------
-----------------------------S--------------------------------------------------
--------------------------S-------------------------------S---------------------
-----------------------------------S------------------S----------S--------------
----------------------------------------------------S---------------------------
----S---------S---------------------------------------
>forward_998
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------------------TACACAACCTGTTGCCGGTT------------------------------------------
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>reverse_2755
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----------------------------------AGAGAACGTCACCAAGCTGG--------------------------
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>forward_2355
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---------------AGGGATGCGGGATCATTTGG---------------------------------------------
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>reverse_3845
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----AGCCGGTCAGTGACAGATCT------------------------------
