>input_sequence_43122
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-----------------------------------------------------------------------------GCC
GGGAGTTCCAGCTTCGCGTCTTGGTCGGAGCTTAACTGCTCGAACAAGC--GCGCGATCCGGCGGCGCCGCCGGACCGTC
CGAGGAAATGCAGGCTCCACGGGCTCCAGTCCTCGTGCAAAACGAGAACTTGCCCATCTTCCGAGGTAATTAACCCGCCA
CCTGCCCACCTCGCCGAATCCGCGGCGAACTCTCTCCCTGCGCTGACCCGCTGCGCGTCCCTGCCGTTGTTTGGCCAGGC
GTTGATGGGAAGAAGGCCGGAGTGGCGCGCGGGCATGCGGCGAGGGCGGGGCGGAGAGCCCTGGGAGACCTCGGTAGAGC
CGGCAAAGCCCCGCCGGCCGGCGCCTCCAGGAAGGCCG---CAGCAGCAGCAGCAGCAGTGAGCGTGCAGGGGTCGAAGG
GCGTGGCGAAACCGAGCTCTCTGAGTGACGGGGACTGGGTGAAATGCTGCGAGTGGGCTAAGGGTGGCATTGAGACTGCG
AGTTTCACCGGGAATGATATGCAGAGACTGATGGCAGACGAGCGTGAAGAGCGTATGTTTTCTGTTTAACTGAACTTCTT
TAGCCACT-----------------------------------------------------------AT-AAAAAACAAG
TTTTTAGTGTTT-GTATGTGT--TAAATCTTTCCTATGTTTCAATTCCGGAACCAGGCATACGAAAGAAGGTGGAGAAGG
CAATGAGCACTTTGCAAGTCTCCATGGACAGTATTTATGACATCGATGAACCATCAAAGGTATGTCGTAACCTTTTGCCT
GATCCCAAATTACCCTCAAGTGTGATGAAACTTAGTTGTGCATCAAGATGATACACTACAATCGAGAGGAATAATATCAG
GCTGGAGTA------------AATTGGTGATAACAGTGAATGA---------------------------TTGAACTGTT
ATGATTGCTGATGGTTAGCATTTCTCAGTCACAAGCTAACTAATTTTCTGGTGGACAACTGGGTTATATACTTGGCTTTG
TGGAATTAGATTAGAATAAGTGTTAGATTATATATTAGTATGCTATTTATCCCCTTTAACTGCAGGCTCGTGACTGCTAT
AAGATGACTGAGTTAGTGAACAGCATGGTGTTACTGATGACTATGAGTTGAAATGTTTTCCCCATTGTTCTGTTGATGTC
ATGAGTATGCGTTGTG----TGCAATTAATTACCTCCAGTTGTTTAAATTCACTACTTCTGTATTTTAGATATCCATGGA
CGATCCAGATGATGAAACAACATTGGAGCTTGACCCTGAGATTCTTCCTCCAATGTCGCATTTAAGCTCAAGACTAGGTT
TGTCTCACTGCCTTCGTCCGCCCTCTTGCACGCTGTGTCACATGCATGTTTGTGGCAGTAAATTACACG-AATAATTCAC
TACTGTGTCACATGCCCTCCTTCCCACAAAAAA-----------------------------------------------
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---------------------------------------------------GTCTTCATAAACTTACTAAAAATTATCTA
CACGTGTCATTGCGTGGCAAAACCTTTTGTTGCAACTGGTCCAACAAACCTGTCGTTTTCATGCAGGTGAGCATGATGGC
AACTATCTCCTTCCTGATTTAGAATTTGAGTATGAAGCTTTCTCTGGTTGCAATTTCGAACTGAAGCTCAAGGATGGTTA
CGGAAATGATAGTTCTTCTAAATCAACAATATTACTCCGTTGAGGTTTCATCGT--------TCAGTGTACTGGTTATCT
TGTCAAACTGTTGTAGTATGTT-----TAGTTATACTGCAAGGTATATGTTGCTGGCATGCCCTATCTTATCTTGTCCAG
ATCTTATAGGCAGTCACATCATACATGCAGTTCATATGTGCCCCGTGTTGTTAGGCTCTTCTGGTTGTAGTAT-ATGTAA
CACTAATGGTAAATTAATAATTGTTGTCACT-------------------------------------------------
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>chr3B_1_TraesCS3B01G429100
TTAATGAACTTTTTCTAG-------------------ATTTCAATGAACCTTTTCTAGATTTCGACG-AACTTTT-----
--------------TT-------------------A----------------------AAATTTGATGAAGTTTTTCCCA
CTTTGATGAACTT--------------------TTT-TTCAAATTTGATGAACATTTTTCAAAGTTGCTGAATTTTTTAA
AAAATTTGAAC-AATTTTTTTGATATTGATGAACTATTTTTCAAAATTTATGAACTTTTTTGAAATTTGTGAACTTTTTT
AAAATCAATC--TTTTTTTAGTTCGTTAACCTTTTCAATGCGTGATTA-TTTTGAAATCTGTGAATTTTCGAATTTCGTC
CCGAAAAAATTACGTTTCTCAAAATCTGTGCGCAATAAATAGCGCGACTTTAATTATTCTTAATTCATGCGCGCTGAAAA
TATCCATGATTGATTGGTTGCACTAGTGGTTAGTGGACTGGAA-CATGTACTGGAGGTTGCGTGGTCGAATCCTCACGGG
AGCAACACTTTTTAGGGGA--TTTCTTTTGTGGTATAG--AAGGCGTGTCGTGGGCCGGCCCAGCAGGCGCGGCTGTGAG
CGCCAGCTTCCTGAACCGGCGCTTAAGGCGCCGGTTAGGAGCTCCTGAGAGGTATGTGGCTCGATTTGTTTTTTTTTTTA
GAAATCTGTCACTCGGGCCGCTGTGCTCGCGTGGTAAACGGGCCGCCGTGCCGGCCCGTGTAGCAGGGGGCCGTGCCTGG
GCCATATAGGGCAGCACGCATGCCGGCCTGTGCACTTAGCGTGCCTAACCGGGTCGTGCCGTGCCTGCCTGGCCCGTTTA
AACCAGGCCGGGCCGTGCCGTGCCGTGCCGGCCCATTTGGCCAGGTTTGTTCGCGTCA-ACCTGTTCCGTTCTCAGCCTC
CTTCCTTCCTTCCCCCTCCTTCCCCAGCGAGCCTGCCACAGTTTCACTCCACTTCCACGGTTTCCGCCGGGCGAGCCACC
GAAATCCAAGGTCGGGCTAGGGCTTTTGCGCAGCGCGCGCCAAGTCCTGCGATTTCCAGGGTTCT------ACCCCCGCC
GGGAGTTCCAGCTTCGCGTCTTGGTCGGAGCTTAACTGCTCGAACAAGC--GCGCGATCCGGCGGCGCCGCCGGACCGTC
CGAGGAAATGCAGGCTCCACGGGCTCCAGTCCTCGTGCAAAACGAGAACTTGCCCATCTTCCGAGGTAATTAACCCGCCA
CCTGCCCACCTCGCCGAATCCGCGGCGAACTCTCTCCCTGCGCTGACCCGCTGCGCGTCCCTGCCGTTGTTTGGCCAGGC
GTTGATGGGAAGAAGGCCGGAGTGGCGCGCGGGCATGCGGCGAGGGCGGGGCGGAGAGCCCTGGGAGACCTCGGTAGAGC
CGGCAAAGCCCCGCCGGCCGGCGCCTCCAGGAAGGCCG---CAGCAGCAGCAGCAGCAGTGAGCGTGCAGGGGTCGAAGG
GCGTGGCGAAACCGAGCTCTCTGAGTGACGGGGACTGGGTGAAATGCTGCGAGTGGGCTAAGGGTGGCATTGAGACTGCG
AGTTTCACCGGGAATGATATGCAGAGACTGATGGCAGACGAGCGTGAAGAGCGTATGTTTTCTGTTTAACTGAACTTCTT
TAGCCACT-----------------------------------------------------------AT-AAAAAACAAG
TTTTTAGTGTTT-GTATGTGT--TAAATCTTTCCTATGTTTCAATTCCGGAACCAGGCATACGAAAGAAGGTGGAGAAGG
CAATGAGCACTTTGCAAGTCTCCATGGACAGTATTTATGACATCGATGAACCATCAAAGGTATGTCGTAACCTTTTGCCT
GATCCCAAATTACCCTCAAGTGTGATGAAACTTAGTTGTGCATCAAGATGATACACTACAATCGAGAGGAATAATATCAG
GCTGGAGTA------------AATTGGTGATAACAGTGAATGA---------------------------TTGAACTGTT
ATGATTGCTGATGGTTAGCATTTCTCAGTCACAAGCTAACTAATTTTCTGGTGGACAACTGGGTTATATACTTGGCTTTG
TGGAATTAGATTAGAATAAGTGTTAGATTATATATTAGTATGCTATTTATCCCCTTTAACTGCAGGCTCGTGACTGCTAT
AAGATGACTGAGTTAGTGAACAGCATGGTGTTACTGATGACTATGAGTTGAAATGTTTTCCCCATTGTTCTGTTGATGTC
ATGAGTATGCGTTGTG----TGCAATTAATTACCTCCAGTTGTTTAAATTCACTACTTCTGTATTTTAGATATCCATGGA
CGATCCAGATGATGAAACAACATTGGAGCTTGACCCTGAGATTCTTCCTCCAATGTCGCATTTAAGCTCAAGACTAGGTT
TGTCTCACTGCCTTCGTCCGCCCTCTTGCACGCTGTGTCACATGCATGTTTGTGGCAGTAAATTACACG-AATAATTCAC
TACTGTGTCACATGCCCTCCTTCCCACAAAAAA-----------------------------------------------
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---------------------------------------------------GTCTTCATAAACTTACTAAAAATTATCTA
CACGTGTCATTGCGTGGCAAAACCTTTTGTTGCAACTGGTCCAACAAACCTGTCGTTTTCATGCAGGTGAGCATGATGGC
AACTATCTCCTTCCTGATTTAGAATTTGAGTATGAAGCTTTCTCTGGTTGCAATTTCGAACTGAAGCTCAAGGATGGTTA
CGGAAATGATAGTTCTTCTAAATCAACAATATTACTCCGTTGAGGTTTCATCGT--------TCAGTGTACTGGTTATCT
TGTCAAACTGTTGTAGTATGTT-----TAGTTATACTGCAAGGTATATGTTGCTGGCATGCCCTATCTTATCTTGTCCAG
ATCTTATAGGCAGTCACATCATACATGCAGTTCATATGTGCCCCGTGTTGTTAGGCTCTTCTGGTTGTAGTAT-ATGTAA
CACTAATGGTAAATTAATAATTGTTGTCACTTACTACTACCTCTGTATCATAATCAAATTGAACTGCAAAGACGTCTTAT
ATTATGGTACGGAGGGAGTATTTGCAAATCGTTTTTAGGCTCTCCTGGTTGTAACACTAATGGCAAATTAATGACTGTAT
TCATTCATTATTTGCGAATCTTTTGGCGTAGCCACTGAAAGTTGAAATCGTGATGTATAACCCCTGATCCCTGTCCATAT
TGAGCTTAAGTCCAATACGACTTA--------ACTTTTTTAAGACATAATGTAGGACAGGCCTGATTGGAGTAGAACTTT
GACCTCACCTTTTGTCATGTTAACTGAAGATACTTTATTCCCATGTTTTTATTTTCATTCAATTGTAGGCAGAAAATGAC
AATTT-GGTTTACGTCCGAGCAAATGTAGTGCTGTTGTAAGTTGCAACTCATGGTACATTGAACATTCCAATCTTCCTTT
TGCTTTCCTTAATACT-AGAAAGTAAGACTTAAAACCAACTAAAACCTAAACTAAAATGACAAGTTTAAAGCACAAAGGA
CAGAGTGAATAGCAGAATGTGCGAGTAGCATTGTCAGTTAATAATTGTGTATGAGCACAACACACTTCGGCAAATTCGTG
CTGGGCACTTCTCGCATCTTACTGGAAAAATGCAAGAACATATTTCAAGAG------------AAAACACTAACCATCTT
GGATGAGCTAGCAAGTAGTTTAGCAGATGTCTGAATGCTCACATGTGCAAATATTCCTTGTGGTACACAGTTAATATTTT
GTTTTCTCAGCCTAAGTTATCTTGTAGCTCCTGATCTAGAAATAGCTTACCTCTTATCAGTAATGGCAGTTCAAGAAACA
ACAACTGATCAAGTGTTGTACTGCTGTACTTATTTGCC-TTGGCTGTGGAGAAAATTTATGCATGCCCACTGAACCACCA
AGCAATGGAAAACTGGTCACAATCTTTCACTGGTGGAGGCTGGTGGAAGGGTATCATCCCTGCTGTTGTCGTTGCATTTG
CTGAGTCTAAGCTT
>chr7B_3
--AATGAACTTTTTCTAG-------------------ATTTCGATGAACCTTTTCTAGATTTCGAAG-AACTTTT-----
--------------TTCAAATTCGATTATTTTCTAA----------------------AAATTTGATGAAGTTTTTCCAA
TTTTGATGAACTT--------------------ATT-TTCAAATTTGATGAACATTTTTCAAATTCGTTGAACTTTTTTA
-AAATTTGAACACATTTTTTTGATATTGATGAACTATTTTACAAAATTGATGAAC--------------------TTTTT
AAAATCAATGA-TTGTTTTAGTTCGTTAACCTTTTCAATTCGTGATTT-TTTTGAAATCTGTGAATTTTCAAATTTCGTC
CCGAAAAAATTACGTTTCCCAAAATCTGTGCGCAATAAATAGCGCGACTTTAATTATTCTTAACTCATGCGCGCTGAAAA
TATACGTGATCGATTGGTTGCACTAGTGGTTAGTCGACTGGAA-CATGTACTGGAGGTCGCGTGGTCGAATCCTCACGGT
AGCAACACTTTTTAAGGGTATTTT-TTTTGTGGTATAGAAGC--CGTGTCGTGGGCCGGCCCAGCAGGGGCGGCTGTGAG
CGCCAGCTTCCTGAACCGGCGCTTAAGGCGCCGGTTAGGAGCTCC-----------------------------------
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>chr3B_4
ATGAAA-----------------------------------------------------------------TTTTTTCAA
ATTTGATGAACTTTTT-------------------CTAGATTTCGATGAACTTTTTCCAACTTCGATGAACTTTTTCCAA
CTTCGATGAACTT--------------------TTT-TTCAAATTCAATGAACATTTTTCAAATTCGTTGAACATTTTTT
GAAATTCGAACGAACTTTTTTGATATTGATGAACTATTTT-CAAAATGGATGAACTTTTCTGAAATTTGTGAACTTTGTT
AGAATCAATGA-TTTTTTTAGTTCGTTA-------CAATTCGTGATTTATTTTGAAATATGTGAACTTTCAAATTTGTTC
GCGAAAAAATTACGTTTGCCCAAATTTGTGCGCAATAAATAGCGCGAGTTTAATTATTCTTAACTCATTCACGCTAAATA
TATCCATGATCGATTGGTTGCCCTAGTGGTTAGGCGACTGGAA-CAGGTACTTTACGTCCCGTGGTCGAATCCTCTCGGG
AGCAATCCTTTTTACGGGA--TTT-TTTTGTGGTATAGATAAGGCGTGTCGTGGGCCGGCCCAGCAGGCGCGGCTGTGAG
CGCCAGCTTCCTGAACCGGCGCTTAAGGCGCCCGTTAGGAGCTCC-----------------------------------
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>chr4D_4
ATGAA-------------------------------------------CTTTTTCTGGATTTCGAGG-AACTTTTTTCAA
ATTTGATGAACTTTTT-------------------C----------------------AAATTTGATGAACTTTTTCCAA
CTTTGATGAAGTT--------------------TTT-GTCAAATTCGATGAACTTTATTCAAATTCATTGAACTTTTTTT
AAAATTCGAATGAACTTTTTTGATATCGATGAACTATTTTTCAAAATTGATGAT-TTTTTTTAAATTTGTGAACTTTTCT
AAAATCAATGA--TTTTTTAGTTCGTTAACCTTTTCAATTCGTGATTTATTTTGAAATCTGTGAACTTTCAAATTTCTTC
CAAAAAAAATTATGTTTTCCTAAATCTGTGCGCAATAAATAGCGCGCATTTAATTATTCTTAATTCATTCGCGCTGAAAA
TATCCATGATCAATTGTTTGCCCTAGTTGTTAGGTGACTGGAA-CAGGTACTGGACGTTGCGTGGTCGAATCCTCACAGG
AGCAACCCTTTTTAGGGGA--TCC-TTTTATGGTATAGTAAAGGCGTGTCGTGGGCCGGCCCAGCAGGCACGGCTGTGAG
CGCCAGCTTCCTGAACCGGCGCTTAAGGCGCCGGTTAGGAGCTCC-----------------------------------
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>chr2B_4
ATGAT------------------------TTTTTTCAAATTTGATGAACTTTTTCAAATCT--GATGAAACTTTT-----
--------------TT-------------------C----------------------AAATTTGATGAACCTTTTCCAA
CTTTGATGAACTTTTTTTCAAATTCGATGAACATTT---------------------TTCAAATTCGTTGAACTTTTTTT
TAAATTCGAACGAACTATTTTGATATTGATGAACTATTTTTCAAAACTGATGAACTTTTTTGAAATTTGTGAACTTTTTT
AAAATCAATGA--TTTTTTAGTTCGTTAACCTTTTCAATTCGTGATGTATTTTGAAATCTGTGAACTTTCAAATTTCTTC
CCAAAATTTTTTCGTTTTCCCAAATCTGTGCGCAATAAATAGCTCGACTTTAAATATTCTTAAAATGTTCGCGCTGAAAA
TATACATGATCAGTTGGTTGCCCTAGTGGTTAGGCGACTGGAA-CAGGTACTCGACGTTGCGTGATCGAATCCTCACGGG
AGCAACCCTTTTTAGGGGA--TTT-TTTTGTGGTATAGATAAGGCGTGTCGTGGGCCGGCCCAGCACGCGCGGCTGTGAG
CGCCAGCTTCCTGAACCGGCGGTTAAGGCGCCGGTTAGGAGCTCC-----------------------------------
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>chr5B_4
ATGAAC-----------------------TTTTTTCAATTTCGATGATTTTTTTCTAGATTTCGACG-AACTTTT-----
--------------GT-------------------C----------------------AAATTTGATGAACTTTTTCCAA
CTTCGATGAACTT--------------------TTT---------------------TTCAAATTCGTTGAACTTTTTTT
-AAATTCAAACTAACTTATTTTATATTGATGAACTATTTTTTAAAATTGATGAACTTTTTTGACATTTGTGAAGTTTTTT
AAAGCCAATGA-TTTTTTTAGTTCGTTAACCTTTTCAATTCGTGAT-TATTTTGAAACCTGTGAACTTTCAAATTTCTTC
CCGAAAAAATTACGTTTCCCCAAATCTGTGCACAATAAATAGCGCGACTTTAATTATTCTTAATTCATTCGCGCTAGGAA
TATCCATGATCGATTGGTTGCCCTAGTGGTTAGTCGACATGAAACATGTACTGGAGGTCGCGTGGTCGAATCCACACGCG
AGCAACAACTTTTAGGGGA--TTT-TTTTGTGGTATAGATAAGGCGTGTTGTGGGCCGGCCCAGCAGGCGTGGCTGTGAG
CGCCAGCTTCCAGAACCGGCGCTTAAGGCGCCGGTTAGGAGCTCC-----------------------------------
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>chr2B_10
TTTTT------------------------------CAAATTTGATGAACTTTTTCAAATCT--AATG-AACTTTT-----
--------------TT-------------------C----------------------AAATTTGATGAACCTTTTCCAA
CTTTGATGAACTT--------------------TTT-TT-AAATTTGATGAACATTTTTCAAATTTGTTGAACTTTTTTT
TAAATTCGAACGAACTATTTTGATATTGATGAACTATTTTTCAAAACTGATGAACTTTTTTGAAATTTGTGAACTTTTTT
AAAATCAATGA--TTTTTTAGTTCGTTAACCTTTTCAATTCGTGATGTATTCTGAAATCTGCGAACTTTCAAATTTCTTC
CCAAAAAAATTTCGTTTTCCCAAATCTGTGCGCAATAAATAGCTCGACTTTAATTATTCTTAATACGTTCGCGCTGAAAA
TATACATGATCAGTTGGTTGCCCTAGTGGTTAGGCGACTGGAA-CGGGTACTCGATGTTGCGTGATCGAATCCTCACGGG
ATCAACCCTTTTTAGGGGA--GTT-TTTTGTGGTATAGATAAGGCGTGTCGTGGGCCAGCCCAGCACGCGCGGCTGTGAG
CGCCAGCTTCCTGAACCGGCGCTTAAGGCGCCGGTTAGGAGCTCC-----------------------------------
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>chr1B_10
TTTTT------------------------------CAAATTTGATGAACTTTTTCAAATCT--GATG-AACTTTT-----
--------------TT-------------------C----------------------AAATTTGATGAACCTTTTCCAA
CTTTGATGAGCTT--------------------TTT-TTCAAATTTGATGAACAATTTTCAAATTCGTTGAACTTTTTTT
TAAATTCGAACGAACTATTTTGATATTGATGAACTATTTTTCAAAACTGATGAACTTTTTTGAAATTTGTGAACTTTTTT
AAAATCAATGA--TTTTTTAGTTCGTTAATCTTTTCAATTCGTGATGTATTTTGAAATCTGTGAACTTTCAAATTTCTTC
CCAAAAAAATTTCGTTTTCCCAAATCTGTGCACAACAAATAGCTCGACTTTAATTATTCTTAACATGTTCGCGCTGGAAA
TATACTTGATCAGTTGGTTGCCCTAGTGGTTAGGCGACTGGAA-CAGGTACTCGACGTTGCGTGATCGAATCCTCACGGG
AGCAACCCTTTTTAGGGGA--TTT-TTTTGTGGTATAGATAAGGAGTGTCGTGGGCCGGCCCAGCACGCGCGGCTGTGAG
CGCCAGCTTCCTGAACCGGCGCTTAAGGCGCCGGTTAGGAGCTCC-----------------------------------
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>chr4A_10
TTTTT------------------------------CAAATTTGATGAACGTTTTGAAATCT--GATG-AACTTTT-----
--------------CT-------------------C----------------------AAATTTGATGAACCTTTTCCAA
CTTTGATGAACTT--------------------TTT-TTCAAATTCGACGAACATTTTTCAAATTCGTTGAACTTTTTTA
AAAATTCAAACGAACTATTTTGATATTGATGGACTATTTTTCAAAACTGATGAACTTTTTTGAAATTTGTGAAATTTTTT
AAAATCAATGA--TTTTTTAGTTCGTTAACCTTTTCAATTCGTGACGTATTTTGAAATCTGTGAACTTTCAAATTTCTTC
CCAAAAAAATTTCGTTTTCCCAAATCTGGGCGCAATAAATAGCTCGACTTTAATTATTCTTAAGATCTTCGCGCTAAAAG
TATACATGATCAGTTGGTTGCCCTAGTTGTTAGGCGACTGGAA-CAGGTACTCGACGTTGCGTGATCGAATCCTCACGGG
AGCAACCCTTTTTAGGGAA--TTT-TTTTGTGGTATAGATAAGGCGTGTCGTGGGCCGGCCCAGCACGCCCGGCTGTCAG
CGCCAGCTTCCTGAACCGGCGCTTAAGGCGCCGGTTAGGAGCTCCCGA--------------------------------
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>chr5B_10
---------TTTTTCTAAATTCCATGAATTTTTTTCAAATTTGATGAACTTTTTCTAGAT--------------------
-------------------------------------------------------------TTCGATGAACTTTTGCCAA
CTTCGATGAACTT--------------------TTAATTCAAATTCAATGAACATTTTTCAAATTCGTTGAACTTGTTTT
GAAATTCGAACGAACTTTTTTTATATGGATGGACTA-TTTTCAAAATTGATGAACTTTTTTGAAATTTGTGAACTTTTTT
AGAATCAATTATTTTGTTTAGTTTGTTAACCTTTTCAATTCGTGATATTTTTTGAAATCTGTGAACATTCAAATTTCTTC
CCGAAAAAATTACGTTTGCCCAAATCTGTGCGCAATAAATACCGCGACTTTAATTATTCTTAACTCATTCGCGCTAATTA
TATCCATGATTGATTGGTTGCCCTAGTGGTTAGGCGACTGGAA-CAGGTACTTCACGTCCCGTGGTCGAATCCTCACGGC
AGCAACCCTTTTTGGGTT--TTTT-TTTTGTGGTATAGATAAGGCGTGTCGTGGGCCGGCCCAGCAGGCGCGGCTGTGAG
CGCCAGCTTCCTGAACCGGCGCTTAAGGCGCCCGTTAGGAGCTCC-----------------------------------
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>chr3A_789
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------------------CGTGCCGTGCCGGCCCAGTTGGCCAGGTTTGGGTTGGCGTCACCTGTTCCGTCCTCAGCCTC
CTC--------CCCCCTCCTTCCCCAGCGAGCCTGCCACTGTTCCACTCCACTTCCACGGATTCCGCCGGGCGAGCCTCC
GAAATCCAAGGTCGGGCTAGGGTTCTTGCGCAGCGCGCGCCAATTCCTGCGATTTCCAGGGTTCT------ACCCCCGCC
GGGAGTTCCAGCTTCGCATCTCGGTGGGAGTATAACTGCTCGAGCAAGCAAGCGCGATCCGGCGACGCCACCGGACCGTC
GGAGGAAATGCAGGCTCCGCGGGCTCCGGTCCTCGTGCAAAACGAGAACTTGCCCATCTTCCGAGGTAATTAACCCACCA
CCTGCCCACCTCGCCGGATCCACGGCCAACTCTCTCATTGTGCTGACCCGCTGCGCGTCCCTGCCGTTGTTTGGCCAGGC
GTTGATGGGAAGAAAGCCGGGGTGGCGCGCGGGCCTGCGGCCAGGGCGGGGCGGCGAGCCCTGGGAGACCTCGGTAGAGC
CGGCAAAGCTCCGCCGGCCGGCGCCGCCGGGAAGGCCGCACCAGCAGCAGCAGCAGCAGGGAGCGTGCAGGGGTCGAAGG
GCGTGGCGAAACCGAGCTCTCTGAGCGATGGGGACTGGATGAAATGCTGCGAGTGGGCTAAGGGTGGCATTGAGACTGCG
AGTTTCACCGGGAATGATATGCAGAGACTGATGGCCGACAAGCAAGAAGAGCGTATGCTTTCTGTTTAACTGAACTTCTT
TAGCCACTATTCTCTTATGATAGCTCTGTGGATTGCTCTGCCCTGTTCTTAAAGAAAATACAATGAAAT-AAAAAACAAG
TTTTTACTGTTTTGTGTGTGT--TAAATCCTTCCTATGTTTCGATTCCGGGACCAGGCATACGAAAGAAGGTGGAGAGGG
CAATGGGCTTTTTGCAAGTCTCCATGGACAGTATTTATGACATCGATGAACCATCGAAGGTATGTGGTAACTTTTTGCCT
GATCCCAAATTGCTCTCAAGTGTGATGAAATGTAGTTGTGCATCTAGATGATACACTAGAATGGAGTGGACTGATAATCA
CTAATAACCTGTAGTTGGAGTAAGTGGCGATAATAAGTTAATAATGAGCTAAGAAAATTATTAAAGCGATTTGAACTGTC
CTGGATGCTGATGGCTAACATTTCTCAGTCATAAGCTAACTATTTTTTTAGTGCACTACTATGTTATACACATGGCTTTA
TGGAATTAGATTAGAATAAGAGCCAGAGGTTATATCACTGTGCTAATTACTTCACCTACGA----CCTTGTGACTGCTAT
AAGATGGCTTACTTAGTGACTAGCACAGTGTTACTGATGACTATGATCTAAAATATTTCCCACCT-----TGTTCATGTC
ATGAGTAGGCGTCGCGTTTATGCAATTGATTACCTCGAATTGAA---------------TGTATCTTAGATATCCCTGGA
CGATCCAGATGATGAAACAACATTGGAGCTTGATCCTGAGTTCCTTCCTCCAACGGCGTACTTAAGCTCAAGACTAGGTT
TGTCTCACCGCCTTCGCCTTCCCTCTTGCCTAC-----------------TGTGGCAGTAAATTACATTAATTAATGGCT
TACTGTTAACCTAGTCCCTCTTTCCACAAGATAGATGCCCTAAGTTTTGTCTTTAGTCACACTTTTCTGAAGTCTGACCA
AGTTTATGCACAAAAATATCAGCCTTCTATACCAAATAAATATACTATGAATACATATTTCATGATGAATCTATTGATAT
TGATTTGGTATTGTAGTTGTTGATATTTTGTTCTATGAACTTGCTCAAACTTAAGAAAACTTATGGGGGCTGTTTTGAAT
CTGAATTTAGTTTCTGTGAAACCGGGGTCAGTTGCTTTTTGCTCCAAAAGGGAAAAAAAATCTTCTTCAAACTTTATCTG
TATGCTCCCCCCTCACCTCAGTGACCTGTTTTTGACTGATCAAATACTATTGTCTTCAGAAACATACCACAAATTATCTA
CATGTGTCGTTGCATGGCAAAATCTTTTGTTGTAACTGCTCCAACAAACCCGTTGTTTTCTTGCAGGTGAGCATGATGGC
AACTATCTCCTTTCTGATTTGGAATTTGAGCATGCCCCTTTTTTTGGTTGCAATTTTGACCTGAAGCTCAAGGATGACTA
CTGAAATGATAGTTTTTCTAGATCAACGGTATTACTCCGTTGAGGTTTCATCGTTCAGTGACTCAGTGTACTGGTTATAT
TGTCCAACTGTTGTAGTACAGTACATCTAGTTATACTGCAAGGTATCTGTTGTTGGTATGCCTTATCTTATGTTGTCCAG
ATTAGGCCGC------CATCATACTTGCAGTTCGTATGTGCCCCGTGTTGTTAGGCTGTCCTGGTTGTAGTATGATGTAA
CGCTAATAATAAATTAATAATTGTTATCACTTCC----------------------------------------------
------------------TATTTGCAAATGGTTGTTAGGCTGTCCTGGTTGTAACGCTAATAGCAAATTAAGAACTGTTG
TCACTCACTATTTGCAAATCTTCT-GCTTAGTCACTGAAAGTTGAAATCGTGCTGTATAATTCCTGATCACTGCTCATAT
TGAGCTGAAGACCAGTATGACTAACCTTTTTTAGTTTTTTGACACATAGTGTAGGACTCCCCTGGTTGGAATAGAACTTT
GGCCCCACCTTTCGTCAT-TTTACTGGAAATACTTTATTCC-ATGTCGTTCTTTTCATTCAGTTGTAGGCAGAAAATGAC
AATCTAGGTTTACGTCCAAGCAAATGTAGTGCTGTTGTAAGCTGGAACTCATGGTGCATTAAACATTTCAATTTTCCTTT
TGCTTTCCGTAATTGAAAGCAACTATGACTTAAAACTAACTAAACCT--AATAAAGTCATT-AGTTTAAAGCACAAAGGA
CAGAGTGAATAGCAGAATGTGTGAGTAGCATTGTCAAT--ATAATTGTGTATTAGCACAACACATTTTGGCAAATTCGTG
CTGAGCACTTCTCGCATCTTACTGGAAAAATGCAAGAACATATTTCAAGATGTCTGAGCTAGTAAAACACTAACCATCTT
GGATGAGCTAGCAAGCAGTTTAGCAGATGTCTGAATGCTCGCATGTGCAAATATTCCTTGTGGTACGCAGTTAATATTTT
GTTTTCTCAGCCTAAGTTATCTTGTAGCTCCTGATCTAGAAATAGCTTACCTCTTGTCAGTAATGGCAGTTCAAGAAACA
ACAACTGATCAAGTGTTGTACTGCTGTACTTATTTGGCTTTGGCTGTGGAGAAAATTTATGCATGCCCACTGAACCACCA
AGCAATGGAAAACTGGTCACAATGTTGCACTGATGGAGGCTGGTGGAAGGGTATCATCCCTGTTGTCGTCATTGCATTTG
CTGAGTCTAAGCTT
>chr3D_860
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----------TCCCCCTCCTTCCCCAGCGAGCCTTC-----TTCCACTCCACTTCCTCGGTTTCCTCCGGGCGAGCCTCC
AAAATCCAAGGTCGGGCTAGGGTTTTTGCGCAGCGCGCGCCAATTCCTGCGATTTCCAGGGTTCTAGTTCTACCCCCGCC
GGCAGTTCCAGCTTCGCATCTCGGTGGGAGTATAACTGCTCGAGCAAGCAAGCGCGATCCAGCGACGCCGCCGGACCGTC
CGAGGAAATGCAGGCTCCGCGGGCTCCAGTCCTCGTGCAAAACGAGAACTTGCCCATCTTCCGAGGTAATCAACCCACCT
CCTGTCCACCTCGCCGAATCCGCATCGAACTCTCTCCCTGCGCTGACCCGTTGCGCGTCCCTGCCGTTGTTTGGCCAGGC
GTTGATGGGAAGAAGGCCGGGGTGGCGCGCGGGCCTGCCGCGAGGGCGGGGCGGAGAGCCCTGGGAGACCTCGGCAGAGC
CGGCAAAGCTCCGCCGGCCGGCGCCGCCGGGAAGGCCGCCGCC---GCAGCAGCAGCAGTGAGCGTGCAGGGGTTGAAGG
GCGTTGCGAAACCGAGCTCTCTGAGCGACGGGGACTGGGTGAAATGCTGCGAGTGGGCTAAGGGTGGCATTGAGACTGCG
AGTTTCACCGGGAATGATATGCAGAGACTGATGGCCGATGAGCAAGAAGAGCGTATGTTTTCTGTTTAACTGAACTTCTT
TGGACACTATTTTCTTATGATAGCTCTGTGAATTGCTCTGCCCTGTTCTTGAAGAAAATGCAATGAAATAAAAAAACAAG
TTTTTACTGTTTTGTGTGTGTGTTAAATCCTTCCTATGTTTCGATTCCGGGACCAGGCATACGAAAGAAGGTGGAGAAGG
CAATGGCCACTTTGCAAGTCTCCATGAACAGTATTTATGACATCAATGTACCATCGAAGGTATGTGGTAACTTTTTGCCT
GATCCCAAATTGCTCTCTAGTGTGATGAAATGTAGTTGTGCATCTAGATGATACACTAGAATGGAGTGGACTGATAATCA
CTAATAACCTGTAGTTGGAGTAAGTGGTGATAATGAGTTAATAATGAGCTAAGAAAATTATTAAAGCGATTTGAACTGTT
CTGGATGCTGATGGCTAACATTTCTCGGTCATAAGCTAACTGTTTTTTTAGTGCACTACTATGTTATACACATGGCTTTA
TGGAATTAGATTAGAATAAGATCCAGAGGTTATATTAGTGTGCTAATTACTTCACCTACGA----GCTTGTGACTGCTAT
AAGATGGCTCAGTTAGTGAATAGCACAGTGTTACTGATGACTATGATCTAAAATATTTCCCACCT-----TGTTCATGTC
ATGAGTAGGCGTTGCGTTTATGCAATTGATTACCTCGAGTTGAA---------------TGTATCTTAGATATCCCTGGA
CGATCCAGATGATGAAACAACATTGGAGCTTGATCCTGAGTTCCTTCCTCCAACGGCGTACTTAAGCTCAAGACTAGGTT
TGTCTCACCGCTTTCGCCTTACC---------------------------------------------------------
--------------------------------------------------------------------------------
----TATGCACAAAAATATCAGCATTCTATACCAAATAAATATACTATGAATACATATTTCATGATGAATCTATTGATAT
TGATTTGGTATTGTAGTTATTGATATTTTGTTCTATGAACTTGCTCAAACTTAAGAAAACTTAGGGGGGCTGTTTTGAGT
CTGAATTTAGTTTCTGTGAAACCGGGGTCAGTTGCTTTTTGCTCCAAAAGGGAAAAAAATTCTTCTTCAAACTTTATCTG
TATGCTCCCCCCTCACCCCATTGACCTGTTTTTGACTGATCAAATACAATTGTCTTCAGAAACATACCACAAATTATCTA
CATGTGTCGTTGCATTGCAAAATCTTTTGTTGTAACTGCTCCAACAAACCCGCTGTTTTCTTGCAGGTGAGCATGATGGC
AACTATCTCCTTTCTGATTTGGAATTTGAGCATGACCCTTTTTCTGGTTGCAATTTTGACCTGAAGCTCAAGGATGACTA
CTGAAATGATAGTTTGTCTAGATCAACAGTATTACTCTGTTGAGGTTTCATCGTTCAGTGACTCAGTGTACTGGTTATAT
TGTCCAACTGTTGTAGTACAGTACATCTAGTTATACTGCAAGGTATCTGTTGTTGGTATGCCTTATCTTATGTTGTCCAG
ATTAGGCAGC------CATCATACTTGCAATCCGTATGTGCCCCGTGTTGTTAGGCTGTCCTGGTTGTATTATGATGTAA
CGCTAATGGTAAATTAATAATTGTTATCACTTCC----------------------------------------------
------------------TATTTACAAATGGTTGTTAGGCTGTCCTGGTTGTAGCGCTAATAGCAAATTAAGAACTGTTG
TCACTCACTATTTGCAAATCTTCT-GCTTAGTCACTGAAAGTTGAAATGGTGCTGTATAACTCCTGATCACTGTTCATAT
TGAGCTGAAGACCAGTATGACTAACCTTTTTTAGTTTTTTGACACATAGTGTAGGACTCCCCTGGTTGGAGTAGAACTTT
GACCCCACCTTTCGTCAT-TTTACTGGAAATACTTTATTCC-ATGTTGTTCTTTTCATTCAGTTGTAGGCAGAAAATGAC
AATCTAGGTTTACGTCCAAGCAAATGTAGTGCTGTTGTAAGCTGGAACTCATGGTGCATTAAACATTTCAATGTGCCTTT
TGCTTTCCTTAATTGAAAGTAAGTATGACTTACAACTAACTAAACCTAAAATAAAGTCATT-AGTGTAAAGCACAAAGGA
CAGAGTGAATAGCAGAATGTGTGAGCAGCATTGTCAGTTAATAATTGTGTATTAGCACAACACACTTCGGCAAATTCATG
CTGTGCACTTCTCGCACCTTACTGGACAAATGCAAGAACATATTTCAAGAG------------AAAACACTAACCATCTT
GGATGAGCTAGCAAGTAGTTTAGCAGATGTCTGAAATCTCGCATGTGCAAACATTCCTTGTGATACACAGTTAACATTTT
GTTTTCTCAGCCTGAGTTATCGTGTAGCTCCTGATCTAGAAATAGCTTACCTCTTATCAGAAATGGCAGTTCAGGAAACA
ACAACTGATCTAGTGTTGTACTGCTGTACTTATTTGCC-TTGGCTGTGGAGAAAATTTATGCATGCCCACTGAACCACCA
AGCAATGGAAAACTGGTCACAATCTTGCACTGATGGAGGCTGGTGGAAGGGTATCATCCCTGCTGTCGTCATTGCATTTG
CTGAGTCTAAGCTT
>SNPs
------------------------------------------S-------------------------------------
------------------------------------------------------------------------------S-
---------------------------------------------------------------S---S----S-----S-
------------------------------------------------S-------------------------------
---------S-----------------------------S-------S----------------------S---------
------------------S-------------------------------------------------------------
----------------------------------S---------------------------------------------
------------------------S-------------------------------------------------------
---------------------------------------------S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSS-----------------S-------------SSSSS-SSS------------S---------
--SSSSSSSS-----------------------------S---S---------------------------------S--
----------------------S--------------------S------------------------------------
-----------------S---S---S----SS-----------S--------------------S---------------
------------------S---------------------------------------------------------S---
--------------------------------------------------------------------------------
--------------------S-------------S---------------------------------------------
---------S---------------S--S---------------------------------------------------
-------------------------S------------------------------------------------------
-----------------------------------S-------SS-----------------------------------
--------------------------------------------------------------------------------
------S--------S-------------S------------S-------S-----------------------------
-----S-------------------------------------------------S---------S-----S--------
-----------S-S----------------SS------------S-------------S---S---S---S-S---SSSS
SSSSS-SSS--------------S---------S-SSSS-SS--------------------------------------
S--SS---------S--S-------------S----------S----S-S---S--S---SS------S--S-------S
--------------------S-SS---SSS---------S-----S---SSS-SSS--SSSSSSS---S-----------
------S--S----------S----SS-------------------SS-S----S---S--S-S-SSSSS----S-----
-------S------S------------S--------S-----SSSSSSSSSSSSSSSSS-----S----------S----
---------------------------------S------S-S----------S-S--S-S-------------------
--------S-------S-SS---------SSS-SSSSSSSSSSSSSSSSS-----------------SS--S----SSSS
------SSSS-SS-S--SS---S------S-S------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------S----S---S-S----------
--S-----S----S--------S---------S-----S-----------S--S------S-------------------
------------S-------S---------S----SS----S--------------S--S----------------SS--
-S------------S-----S-------S-------------------------------------------------S-
----S-------------SSS-------------------------S-----S---S-----S--------S--------
--SSSSS--SSSSSSS--------S--------S-----------------------S-S--------------------
-S-----------------------S------S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSS-----------S---S-------S-------------S-----S---------SS-----SS
---S---S-------S------S-S--S---S--------------------S--------S-------S----S-----
------S---S---S--S----S----------S------S-S-----S--------SSS----S---------------
----S-------S-----S--S----S-S------------S-----S--S----------S------------------
---S-------------S-----------------------S--S----------S----S------S----S-------
-------------SSS---S-----S----------S-------S-SS---SS--SSSSSSS------------------
---------------------S------------------------------S---------------------------
---S----------------------------------------------------------------------------
----------------------------------------S---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------S-----S---------------------------------S---S---------
--------------
>forward_934
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----------------------------------ATTTGGCCAGGTTTGTTCGC--------------------------
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>reverse_3247
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----------------------------------------------ATGTTGCTGGCATGCCCTAT--------------
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>forward_2499
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-------------------------------------------------------------------------------T
TGTCTCACTGCCTTCGTCC-------------------------------------------------------------
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>reverse_4387
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------------------------------------------------------------------TGTCGTTGCATTTG
CTGAGTC-------
