>input_sequence_43121
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-------------------------------------------ATGGCCGCGAGCGTCAAGCAAGTCCTTGGGTGGTTCC
CCGGCATCGACGCCATCGCCAGGATTAGGGATGCCTCCCTCTCCGCTGTCCCGG---GCTACGCCGGCGAGGACCGCATC
AGCGCCCTCCAAGACCACCTCCTCCGCGACATCGTGTCCCGCCTCCCCGTCAAGGACGCCGCCCGCACGGCCGCGCTCGC
CTCCCGCTGGCGCCACCTCTGGCGCTCCACGCCGCTCGTCATGTACGACGCCCACCTCCTCCCAGCCGGCGACCCCGCGC
GCGTCGCCGCCGTCGCCCGCATCCTCGCCGACCACCCGGGCCCCTTCCGCACCGTCAGCATCACCTGCTGCAATTTCGCG
TCGCACGAGCGTGAGCTCGCCGAGTGGCCGCGCCTCCTCGCCGCCAAGGGCGTCCAAGACCTCGTCCTCGTCAACAAGC-
--CCGCCGACGACG-AACGCC---------TCCCCG---TCGTCCCCGCCGACATCCTCCGCTGCGCCTCACTCCGGCGC
CTCTTCCTGGGATTCTGGAGGTTCCCGGACAACGGCTTCAGCCCACCCGGTGGAGG-------------CGCAGACGGA-
--TTTCCACACCTCCGGGAGCTCAGCTTGTTCGGCACCGACGACATGCTCGGCGGCGACCTCGAC--------CGCTTGC
TCGCTTCCAGCCCCGTTCTGGACACCCTCGCGCTCGTCCTCAGCCCAACCTGCGAGCGCGTCCACCTCCGCAGCCAAAGC
CTCAAGTGCGTGCTCCTCTGGGAGTGCTTCATGAAGGAGGTCCTCGTCATGGACTCCCCGCTCCTGGAGCGGCTCATTCT
GTGGAAAACCATTGATGGTGAAGACGACCCGGTGGCTG----------------TGAGGGTCAGCATTGCTGACGCGCCG
AAGCTGCGGGTGCTGGGTTACTTGGAGCCGAGAGTTCACCAGCTGCAGATTGGCGAGAATGTCATCAAGGTACTACCTTT
CA-----ATGCATCTCACTTTCAGTAATGGCATTCCATATTCCAATCTGTATCCACATTTTAAGATACTACTAGAAGGAG
CATGCCCTCTTCATTACGCGATGCACATAGCAAAACATTTCTCTCGGCGTGTCAAGTGATGCGTGAATCTTGTATGTGAT
CATTGTATCAACGGAATGAAGTATGATCTCTCTTTCTCTCTTGGTGCATTGCGTTGCAGCCTGATACAATGGTGAGCCCA
AGCACCGTGTTTCCAAGCGTCAAGACATTGGCCTTGAAGGTGAACTTTGGTGTCTTTGAGGAGGTCAAGATGCTGGCCAG
CGTCCTCAGATGCTTTCCCGAAGTTGACAGGCTGCACATCGAGGTGACTTCTTCATACCCTCCTGCACTGCACATTCCTT
CAGTCAGCTGTTCGGCATTCATATCATAGATTATCTGTCACCG-----AGGTGATTAAACTACTGTCCACTTTTACCA--
---TTTTGCAGTCTGTCATGGCCGATGAACCCACTGGAACACACTATACTGAGTTCTGGCAAGAGATCCGTCCTATCGAA
TGTGTGAAGTCGCACGTCAAGAAGGTGGTTATCCATGAATTCCGCGGAAAACAAAGCGAAAACGAATTCCTCGAGTTTGT
TAGCAGTAGTGCAGAGAAGCTGCGGTCTTTGCTTGTTGTGATTACCCGAGAAATGTTTGCTTCGGCATGGGATTTCTCAA
TTTCATTGCCAAATGAGGTGAATGAGGTGATTGTCAAAGCAGGGGCTCTGACGCGTGGAGCATGGGCCTGCGAGGACTGT
CAACTGGTGGTGGCGGGTCCTAAAGTGGTGGATGGTTGGAGCTTCCGCAGAGCGTCTGATCCCTCTGTAAAGGACCCTTT
CCGCTGA-------------------------------------------------------------------------
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-------
>chr3B_1_TraesCS3B01G147900
CCTTTAACACTTGATTTAAACATCAGCAGGCTATCATCGGCGAAAAGGAGATGGTTCACGACGGGCGTCGTGGTGCCACC
TTGATCCCTTCTAGCTGAGACGACGAGGAACTGGATTTCAGTAGGCACGAAAGGCTCTCTGCTGCGATTAAAAAGAGATG
TGGGGATATCGGATCTCCCTGCCGAATACCTCTGGATGGATAGAAAGTGTCTAGTCTCTCACCATTAAAAAGCACTGAGA
ACGAAACTGAACGCACCATGTTCATGACGAACTGTACCCAGGCTGGAGCGAAACCCAGCTTTATCATTATCGAGCTTTAG
GGCACAAAAACTGTTTACCTTGGCCTTGCTGTGTTTCATAAAGTGAAGACACTCATAAGCACTGATGATGTTATCTGTAA
TATGTCTTCCTGGCACAAAGAACATTCTTTTTTTTAATGACGGCAAGGACATCCCCCCNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNTTTGAGGGCTATTCCCATTCCATCTCGGTGGACCGGCAACGCATGCAGCTACATGGGCCGGTGGG
TAACCAGCTTTCCGAGATTTGGTAGGCCCAAGGTTTCTTACTCCTCCACCAGCGGAGCCAGCCAGCCACCACACCC---C
TCCCACTCCATTCCGGCCAAAACCCTCGCCTCCGGTCGCCGCCATGGCCGCGAGCGTCAAGCAAGTCCTTGGGTGGTTCC
CCGGCATCGACGCCATCGCCAGGATTAGGGATGCCTCCCTCTCCGCTGTCCCGG---GCTACGCCGGCGAGGACCGCATC
AGCGCCCTCCAAGACCACCTCCTCCGCGACATCGTGTCCCGCCTCCCCGTCAAGGACGCCGCCCGCACGGCCGCGCTCGC
CTCCCGCTGGCGCCACCTCTGGCGCTCCACGCCGCTCGTCATGTACGACGCCCACCTCCTCCCAGCCGGCGACCCCGCGC
GCGTCGCCGCCGTCGCCCGCATCCTCGCCGACCACCCGGGCCCCTTCCGCACCGTCAGCATCACCTGCTGCAATTTCGCG
TCGCACGAGCGTGAGCTCGCCGAGTGGCCGCGCCTCCTCGCCGCCAAGGGCGTCCAAGACCTCGTCCTCGTCAACAAGC-
--CCGCCGACGACG-AACGCC---------TCCCCG---TCGTCCCCGCCGACATCCTCCGCTGCGCCTCACTCCGGCGC
CTCTTCCTGGGATTCTGGAGGTTCCCGGACAACGGCTTCAGCCCACCCGGTGGAGG-------------CGCAGACGGA-
--TTTCCACACCTCCGGGAGCTCAGCTTGTTCGGCACCGACGACATGCTCGGCGGCGACCTCGAC--------CGCTTGC
TCGCTTCCAGCCCCGTTCTGGACACCCTCGCGCTCGTCCTCAGCCCAACCTGCGAGCGCGTCCACCTCCGCAGCCAAAGC
CTCAAGTGCGTGCTCCTCTGGGAGTGCTTCATGAAGGAGGTCCTCGTCATGGACTCCCCGCTCCTGGAGCGGCTCATTCT
GTGGAAAACCATTGATGGTGAAGACGACCCGGTGGCTG----------------TGAGGGTCAGCATTGCTGACGCGCCG
AAGCTGCGGGTGCTGGGTTACTTGGAGCCGAGAGTTCACCAGCTGCAGATTGGCGAGAATGTCATCAAGGTACTACCTTT
CA-----ATGCATCTCACTTTCAGTAATGGCATTCCATATTCCAATCTGTATCCACATTTTAAGATACTACTAGAAGGAG
CATGCCCTCTTCATTACGCGATGCACATAGCAAAACATTTCTCTCGGCGTGTCAAGTGATGCGTGAATCTTGTATGTGAT
CATTGTATCAACGGAATGAAGTATGATCTCTCTTTCTCTCTTGGTGCATTGCGTTGCAGCCTGATACAATGGTGAGCCCA
AGCACCGTGTTTCCAAGCGTCAAGACATTGGCCTTGAAGGTGAACTTTGGTGTCTTTGAGGAGGTCAAGATGCTGGCCAG
CGTCCTCAGATGCTTTCCCGAAGTTGACAGGCTGCACATCGAGGTGACTTCTTCATACCCTCCTGCACTGCACATTCCTT
CAGTCAGCTGTTCGGCATTCATATCATAGATTATCTGTCACCG-----AGGTGATTAAACTACTGTCCACTTTTACCA--
---TTTTGCAGTCTGTCATGGCCGATGAACCCACTGGAACACACTATACTGAGTTCTGGCAAGAGATCCGTCCTATCGAA
TGTGTGAAGTCGCACGTCAAGAAGGTGGTTATCCATGAATTCCGCGGAAAACAAAGCGAAAACGAATTCCTCGAGTTTGT
TAGCAGTAGTGCAGAGAAGCTGCGGTCTTTGCTTGTTGTGATTACCCGAGAAATGTTTGCTTCGGCATGGGATTTCTCAA
TTTCATTGCCAAATGAGGTGAATGAGGTGATTGTCAAAGCAGGGGCTCTGACGCGTGGAGCATGGGCCTGCGAGGACTGT
CAACTGGTGGTGGCGGGTCCTAAAGTGGTGGATGGTTGGAGCTTCCGCAGAGCGTCTGATCCCTCTGTAAAGGACCCTTT
CCGCTGATGCACTTGAAGAAGCAGAGCACTCCTTCAGGTACCATGAGCAGCTGCAAGTGTTCATGTTAGCTGAAACTGAT
GTTTGATTTGACATGTTATGCACTGTGTGTGATCAACATTGATCTGTCTTTGATGCTGATAGAAGTAAAAGACATGCAGT
TAGTTACATCTTGAGACTTTATATTGCTTTTACCATCCTAGTATCATTTTTCTTTGTAGTGCTCCTTTTTCTGTTTCATC
CAGCACTAGCTAGGCAGCATTCCATGGCTTGCAGATATCATATACGTGCCGACCACCTCTGCCAATTCAACCCAGAGTAT
ACAATGCTCTAGTCAGGTTGATGAATTAGCCCCTGGATCATGCTTAGGTCTGCTGGGCTGCTGGCTGAGTTTTAGTTTTC
TTGGTTGCTCCATGGGCTTGTAATACATGCCTTGACTATTTTCTCTAGTGTTTGGCAAGCAAAACTATCATGGATATGTC
TGTTCCAGCATATCCTCTGTGATCGGGAGGACTTGATCAGGGCTGGTTAGGGTAGGTACAAATCAAATTGGTTTGATGTG
CTGATGATGCTAGTGGCAAGCAAAACTATCATGGATATGTTTGTTCCAGCTTATCCTGTGTGATCGGGAGGACTTGATCA
GGGCTGGTTAGGGTAGGTACAAATCAAATTGGTTTGATGTGCTGATGATGCCAGTGATGAGCAATAGCAGCATATATTCG
CCTTAGAAAAGAATCTGCAGCAGTACATAACACGTGCCTTGACCTTGAGCTTGAGGGCCATATTCAGAAGTAGAAAA--C
AA-GTTGAGGAGATGCCTGTGACGATCATGTTTTCACTCAAGAAATTACACACATCAGTAGTGTTCAAGT----------
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---------------------------TTGAAATTCTACCGATGTTTTAAATAATTCAGTCAATTATTTTTGCCTCAATG
ATTGCTTCATGCCAACTCAGTGTACGGCCACGTCTTGTAAGCATCCTAATCCTCACCAGTATCTATATATGTGCCTGTCA
CCATCGT
>chr3D_831
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------------------------------CATTCCATCTCGGTGGACCGGCAACGCATGCAGCTACATGGGCCGGTGGG
CAACCAGCTTTCCGAGATTTGGTAGGCCCAAGGTTTCTTACTCCTCCACCAGCGGAGCCAGCCA-CCACCACACCC---C
TCCCACTCCATTCCGGCCAAAACCCTCGCCTCCGGTCGCCGCCATGGCCGCGAGCGTCGAGCAAGTCCTTGGGTGGTTCC
CCGGCATCGACGCCATCGCCAGGATTAGGGATGCCTCCCTCTCCGCTGTCCCGG---GCTACGCCAGCGAGGACCGCATC
AGCGCCCTCCAAGACCACCTCCTCCGCGACATCGTGTCCCGCCTCCCCGTCAAGGACGCCGCCCGCACGGCCGCGCTCGC
CTCCCGCTGGCGCCAGCTCTGGCGCTCCACGCCGCTCGTCATGTACGACGCCCACCTCCTCCCAGCCGGCGACCCCGCGC
GCGTCGCCGCCGTCGCCCGCATCCTCGCCGACCACCCGGGCCCCTTCCGCACCGTCAGCATCACCTGCTGCAATTTCGCG
TCGCACGAGCGTGAGCTCGCCGAGTGGCCGCGCCTCCTCGCCGCCAAGGGCGTCCAGGACCTCGTCCTCGTCAACAAGC-
--CCGCCGACGACG-AACGCC---------TCCCCG---ACGTCCCCGCCGACATCCTCCGCTGCGCCTCGCTCCGGCGC
CTCTTCCTGGGATTCTGGACGTTCCCGGACACCGGCGTCAGCCCACCCGGTGGAGG-------------CGCAGACGGA-
--TTTCCACACCTCCGGGAGCTCAGCTT--------------------------------------------------GC
TCGCCTCCAGCCCCGTTCTCGACACCCTCGCGCTCGTCCTCAGCCCAACCTGCGAGCGCGTCCACCTCCGCAGCCAAAGC
CTCAAGTGCGTGCTCCTCTGGGAGTGCTTCGTGAAGGAGGTCCTCGTCATGGACTCCCCGCTCCTGGAGCGGCTCATTAT
GTGGAAAACCATTGATGGTGAAGACGACCCGGTGGCTG----------------TGAGGGTCAGCATTGCTGACGCGCCG
AAGCTGCGGGTGCTGGGTTACTTGGAGCCGAGAGTTCACCAGCTGCAGATTGGTGAGAATGTCATCAAGGTACTACCTTT
CA-----ATGCATCTCACTTTCAGTAATGGCATTCCATATTCCAATCTGTATCCACATTTTGAAA---TACTAGAAGGAG
CATGGCCTCTTCATTATGCGATGCACATAGCAAAACATTTCTCTCGGTGTGTCAACTGATGTGTGAATCTTGTATTTGAT
CATTGTACCGACGTAATGAAGTATGATCTCTCTTTCTT--TTGGTGGATTGCATTGCAGCCTGATACAATGGTGAGCCCA
AGCACCGTGTTTCCAAGCGTCAAGACATTGGCCTTGAAGGTGAACTTTGGTGTCTTTGAGGAGGTCAAGATGCTGGCCTG
TGTCCTCAGATGCTTTCCCGAAGTTGACAGGCTGCACATCGAGGTGACTTCTTTGTACCCTCCTGTACTGCACATTCCTT
CAGTCAGCCGTTCGGCATTCATATCATAGATTATCTGTCACCG-----AGGTGATTAAACTACTGTCCACTTTTACCA--
---TTTTGCAGTCTGTCACGGCCAATGAACCCACTGAATTGCACCATGCTGAGTTCTGGCAAGAGGTCCATCCTATCGAA
TGTGTGAAGTCACACGTCAAGAAGGTGGTTATCCATGAATTCCGCGGAAAACAAAGCGAAAATGAATTCCTCGAGTTTGT
TAGCAGCAGTGCAGAGAAGCTGCGGTCTTTGCTTGTTGTGATTACCCAAGAAATGTTTGCGTCGGCATGGGATTTCTCAA
TTTCATTGCCAAATGAGGTGAATGAGGTGATTGTCAAAGCAGGGGCTCTAACGCGTGGAGCATGGGCCTGCGAGGACTGT
CAACTGGTGGTGGCGGGTCCTAAAGTGTTGGATGGTTGGAACTTCCGCAGAGCGTCTGATCCCTGTGTTAAGGACCCTTT
CCGCTGATGCACTTGAAGAAGCAGAGCACTCCTTCAGGTACCATGAGCAGCTGCAAGTGTTCAAGTTAGCTGAAACTGAT
GTTTAATTTGACATGTTATGCACTGTGTGTGATCAACATTGATCTGTCTTTGATGCTGATAGAAGTAAAAGACATGCAGT
TAGTTACATCTTGAGACTTTATATTGCTTTTACTATCCTAGTATCATTTTTCTTTGTAGCGCTCCTTTTTCTGTTTCATC
CAGCACTAGCTAGGCAGCATTCCATGGCTTGCGGATATCATATATGTGCCGACCACCTCTGCCAATTCAACCCAGAGTAT
ACAATACTCTAGCCAGTGTGATGAATTAGCCCCTGGATCATGCTT-----------------------------------
--------------------------------------------------------------------------------
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------------------------------GGTTTGATGTGCTGATGATGCTAGTGATGAGCAATAGCAGCATATATTCG
CCTCAGAAAAGAATCTGCAGCAGTACATAACACGTGCCTTGACCTTGAGCTTGAGGGCCATATTCAGAAGAAGAAAA--C
AAGGTTGAGGAGATGCCTTTGACGATCATGTTTTCACTCAATAAATTACACACATCAGTAGTGTTCAAGT----------
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---------------------------TTGTAATTCTACCGATGTTGTAAATAATTCAGTCAAATAGTTTTGCCTCAATG
ATTGCTTCATGTCAACTCAGTGTGCAGCCACGCCTTGTAAGCATCCTAATCCTCACCAGTATCTATGTATGTGCCTGTCA
CCATCGT
>chr3A_831
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------------------------------CACTCCATCTCGGTGGACCGGCCACGAATGCAGCTTCATGGGCCGCTGGG
CAACCAGCTTTCCGAGATTTGGTAGGCCCAAGGTTTCTTACTCCTCCACCAGC---------CA-CCTCCACACCGGAGC
TCCCCCTCCATTCCGGCCAAAACCCTCGCCTCCGGTCGCCGCCATGGCCGCGAGCGTCGAGCAAGTCCTTGGGTGGTTCC
CCGGCATCGAAGCCATCACCAGAATCAGGGTCGCCTCCCTCTCCGCCGTCCCGG---GCTACGCCGGCGAGGACCGCATC
AGCGCCCTCCAAGACCACCTCCTCCGCGACATCGTGTCCCGCCTCCCCGTCAAGGACGCCGCCCGCACGGCCGCGCTAGC
CTCCCGCTGGCGCCACCTCTGGCGCTCCACGCCGCTCGTCATGTACGACGCCCACCTCCTCCCGGCCGGCGACCCCGCGC
GCGTCGCCGCCGTCGCCCGCATCCTCGCCGACCACCCGGGCCCCTTCCGCACCATCAGCATCACCTGCTGCAATTTCGCG
TCGCACGAGCGCGAGCTCGCCGAGTGGCCGCGCCTCCTCGCCGCCAAGGGCGTCCAGGACCTCGTCCTCGTCAACAAGC-
--CCGCCGACGACG-AACGCC---------TCCCCG---TCGTCCCCGCCGACATCCTCCGCTGCGCCTCGCTCCGGCGC
CTCTTCATGGGGTTCTGGACGTTCCCGGACACCGGCGTCAGCCCACCCGGTGGAGG-------------CGCAGACGGA-
--TTTCCACACCTCCGGGAACTCACCTTGTTCGGCACCGACGACATGCTCGGCGGCGACCTCGAC--------CGCTTGC
TCGCTTCCAGCCCCGTTCTCGACACCCTCGCGCTCGTCCTCAGCCCAACCTGCGAGCGCGTCCACCTCCGCAGCCAAAGC
CTCAAGTGCGTGCTCCTCTGGGAGTACTTCCTGAAGGAGGTCCTCGTCATGGACGCCCCGCTCCTGGAGCGGCTCATTCT
GTGGAAAACCATTGATGGTGAGGACGAACCGGTGGCTG----------------TGAGGGTCAGCATTGCTGACGCGCCC
AAGCTGCGGGTGCTGGGTTACTTGGAGCCGAGAATTCACCAGCTGCAGATTGGCGAGAATGTCATCAAGGTACTACCTTT
CA-----ATGCATCTCACTTTCAGTAATGGCATTCCATATTCCAATCTGTATCCACATTTTAAGA---TAATAGAAGGAG
CATGGCCTCTTCATTATGCG-------------------------------------------TGAATCTTGTATGTGAT
CATTGTACCAACGGAATGAAGTATGATCTCTCTTTCTC--TTGGTGCATTGCATTGCAGCCTGATACAATGGTGAGCCCA
AGCACCGTGTTTCCAAGCGTCAAGACATTGGCCTTGAAGGTGAACTTTGGTGTCTTTGAGGAGGTCAAGATGCTGGCCAG
CGTCCTCAGATGCTTTCCTGAAGTTGACAGGCTGCACATCGAGGTGACTTCTTCGTATCCTCCTGCACTGCACATTCCTT
CAGTCAGCCGTTCAGCATTCATATAACAGATTATCTATCACTG-----AGGTGATTAAACTACTGTCCATTTTTACCA--
---TTTTGCAGTCTGTCACGGCCGATGAACCCACTGGAATGCACCATGCCGAGTTCTGGCAAGAGGTCCATCCTATCGAA
TGTGTGAAGTCACATGTCAAGAAGGTGGTTATCCATGAATTCCGCGGAAAACAAGGCGAAAACGAATTCCTCAAGTTTGT
TAGCAGCAGTGCAGAGAAGCTGCGGTCTTTGCTTGTTGTGATTACCCAAGAAATGTTTGCGTCGGCATGGGATTTCTCAA
TTTCATTGCCAAATGAGGTGAATGAGGTGATTGTCAAAGCAGGGGCTCTGACGCGTGGAGCATGGGCCTGCGAGGACTGT
CAACTGGTGGTGGCGGGTCCTAAAGTGGTGGATGGTTGGAACTTCCGCAGAGCGTTTGATCCCTGTGTTAAGGACCCTTT
CCGCTGATGCACTTGAAGAAGCAGAGCACTCCTTCAGGTACCATGAACAGCTGCAAGTGTTCAAGTTAGCTGAAACTGAT
GTTTAATTTGACATGTTATGCACTGTGTGTTATCAACATTGATCTGCCTTTGATGCTGATAGAAGTAAAAGACATGCAGT
TAGTTACATCTTGAGAATTTATATTGCTTTTACTATCCTAGTATCATTTTTCTTTGTAGTGCTCCTTTTTCTGTTTCATC
CAGCACTGGCTAGGCAGCATTCCATGGCTTGCAGATATCATATATGTGCCGATCACCTCTGCCAATTCAACCCAGAGTAT
ACAATGCTCTAGACAGGTTGATGAATTAGCCCCTGGATCATGGTTAGGTCCACTGTGCTGCTGGCTGAGTTTTAGTTTTC
TTGGTTGCTCCATAGGCTTGTAATACATGCCTTGACTATTTTCTCTAGTGTTTGGCAAGCAAAACTATCATGGAT-----
--------------------------------------------------------------------------------
--------------------------------------GTTTGTTTAAGCTTATTCTGTGTGATCAGGAGGACTTGATCG
GGGCTTGTTAGGGTAGGTACGAATC-AATTGGTTTGATGTGCTGATGATGCTAGCGATGAGCAGTAGCAGCATATATTCG
CCTCAGAAAAGAAGTTGCAGCAGTACATAACACTTGTCTAGACCTTGACCTTGAGGACCATTTTCTGAAGAAGAAAAAAC
AA-GTTGGGGAGATGCCTGTGACGGTCATATTTTCACTCAATAAATTACACACATCAGTACTGTCCAAATTTTTGTTGAA
CAATCACCGGGGGGTGGGGGGGAGGCCTGCGTTACATCAGAGAGTACAATGAGAGGAGAGGAATAGGTGCCAAGACATGG
CGGCGTCCCTACTAACAGGGTCTTTGAACCTAAAGATCGAAAGCATGAAATCAGAGATTACATTCTGTAAGGTATCTGCA
GCTGAGCGAGTCGCAGTAGTGTTCTAGTTTAAATTCTACCGATGTTGTAAATAGTTCAGTCAAATATTTTTGCCTCAATG
ATTGCTTCATGCCAACTCAGTGTGCAGCCACGCCTTCCAAGCATCCTAATCCTCACCAGTATCTGTGTATGTGCCTGTCA
CCATCGT
>chr3D_993
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-----------------------------------TCGCCGCCATGGCCGTGGTCGTCGTGGATGTCCTGCGCTGGTTCC
CCGGAGGCGAGGCCATCTTCAGGGCCAATGAAGCCTCGCTCTCCGCCGCCACCGGCCACTACGACGGCGAGGACCGCATC
AGCGCCCTCCACGACGACCTCCTCCGGGACATCGTGTCCCGCCTCCCCGCCAAGGACGCCGCCCGCACCGCCGCGCTCGC
CTCCCGCTGGCGCCATCTCTGGCGCTCCACGCCGCTCGTCTTCCACGACCTCCACCTCCTTCCGTCCAGCGACCCCTGGC
ACATCGCCGCCGTCGACCGCGTCCTCGCCGGCCACCCGGGCCCCTTCTCCACCGTCAGCATCTGCTACTGCAACTTCGGG
TGCCACGACCGCGAGCTCGCCGAGTGGCCGCGCCTCCTCGCCGCCAAGGGTGTCCGGGACCTCGTCCTCGTCAACATGC-
--ACGCCGACATCG-AACGCGTCCCCGCCATCCCCG---ATTTCCCCGCCGACGTCCTCCGATGCGCCTCGCTCCGCCGC
CTCTTCCTGGGGTTCTGGAAATTCCCCATCACCGGCATCGTCCCACCCGCC----GGCGTCGGCAGCGCCGCTGACGGG-
--TTCCCACACCTCCAGGAGCTCAGCTTGTTCGGCAGCGGCATGCCCAACAGCCGCGACCTCGAC--------CACCTGC
TCGCCCGCAGCCCCGTTCTCGACACCCTCGCCATCGTATTCAGCATGATGTTCGAGCGCGTCCACCTCCGCAGCCAGAGC
CTCAAGTGCGTGCTCCTCCGGCGTTGCTTAGTGGAGGAGGTCGCCGTCTTGAACTCCCCGCTCCTGGAGCGCCTCGTTAT
GTGGAAACTCGTCGTCAGTGAAGACGATTCGGTGGCTG----------------TGACGGTCAAGATTGCTGCTGCGCCC
AAGCTGCGGGTGCTCGGCTACCTAGAGCCAAGAATTCACCAGCTGCAGATTGGCGACAATGTCATCAAGGTACTACCTTC
AGTTCCCATGCATCTCACTTTCA---------------------------------------------------------
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>chr6B_996
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--------------------------------------CCGCCATGGCCGCCGGCGTCTGGAACGTCCTGGACTGGTTCC
CCGGAGGCGAGGCCATCCTCAGGGCCGAGAGCGCCTTCCTCTCCGCCAGCACCGCCGCGGGCGCCGGCGAGGACCGCATC
AGCGCCCTCCACGACCACCCCCTCAGGGACATCGTGTCCCGGCTCCCCGCCAGGGACGCCGCCCGCACCGCCGCGCTCGC
CTCCCGCTGGCGCCACCTCTGGCGCTCCACGCCGCTCGTCTTCCACGACCCCCACCTCCTCCCGTCCCGACAGCCCGAGC
TCGCCGCCGCCGTCGCCCGCGTCCTCGCCGCCCACCCGGGCCCCTTCGCCACCGTCAGCATCAGATGCTGCGACTTCCGG
CGCCAAAGCCTCGAGCTCGCCGAGTGCCCGCGTCTCCTCGCCGCCAAGGCCGTCCGGGACCTCGTCCTGGTCAACAACAT
GGCCGCCGACCTCG-ACCACC---------TCCCCG---ACGCGCCCGCCGGGGTCCTCAGCTGCGCCTCGCTCCGCCGC
CTCTTCCTGGGATACTTTCGGTTCCCTGACACCGGCGCCGGCAGAGAGGAGGGATT----------------------G-
--TTCCCGCACCTCCGGGAGCTCAGCTTGCTCGGCGTCCACATGCCCGACTGCGACAACCTCGAC--------CACCTGC
TCGCCCGCAGCCCCGTTCTGGACACCCTCGTCCTCGTCCTCAGCCGTATCTTCCACCACATTCACCTCTGCAGCCAGAGC
CTCAAATCAGCGCTCCTCTGGAGTTACTACGCGCAGGAGATCGCCGTCATGGACTGCCCGCTCCTGGTGCGATGTCTCAT
--------------TCGGTGAAGGTGATTC------GG----------------TGGCTGTGAAGATTGCTGCTGCGCCC
AAGCTGCGCGTGCTCGGCTACCTGGAGCCAAGAGTCCACCAGCTCAACATTGGCGGCAACCTCATCAAGGTACCGCCTTT
C-------------------------------------------------------------------------------
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>chr6A_1070
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--------------------------------GCCTCCCTCTCCCCCGCCGTCG---ACTACGACGGCGAGGACCGCATC
AGCGCCCTCCCCGACGACCTCCTCCGCAGCATCGTCTCACGCCTCCCCGTCAAGGACGCAGCCCGCACCGCCTCCCTCGC
CTCCCGCTGGCGCCACCTCTGGCGCTCCACCCCGCTCTCCCTCAACGACGCCGACCTGCC---------CCGAT------
------CCGTCGTCGCCCGCGCCCTTGCCGACCACCCGGGCCCCTTCCGCGCCATCCACATCACCCGCTGCCGGTTCGCG
TCCCACGAGCGCGAGATCGCAGAGTGGCCGCGCCTCTTCGCTGCCAATGGCATCCAGCACCTCGTCCTCGTCAACGAC--
----GCCAACCTCG-CCAGGTT-CCCCCCGACGCCGTGCGCCTCCCCGCAGACATCCTCCGCTGCGCCTCACTCCAGCGC
CTCTTCCTGGGTTTCTTCACGTTCCCGGACACCGCTG--GTCTCTCCCGCC----G-------------AGCCGACGTC-
--CTGCCCCGCCTCCAGGAACTCAGCATGTTCACGACCAGCAT---CAGCGACGAGGACCTCGAC--------TACATGC
TCGCTTGCAGCCCGGTTCTGGAGAAGCTCGCGTTCGTGCTCAGCTATACACCCGATTTCATCCATCTACGGAGCAGAAGC
CTCCGGTGCGTGCTCCTCTGGATCTTCATGGCAGACGAGGTTGCCGTGGTGGATGCCCCGCTCCTGGAGCGGCTCTTC--
--------------TTGCTGGAAGCGCCCCGTGGAGGACATGCTGAGAGTACTATGATGATCAAGATTGCTCATGCGCCC
AACCTGCAGGTGCTCGGCTTCTTGGAGCCAGGATTTCACCGGCTGCAGATCGGCGACAATGTCATTGAGGTA--------
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>chr6D_1070
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--------------------------------GCCTCCCTCTCCGCCGCCGTTG---ACTACGAGGGCGAGGACCGCATC
AGCGCCCTCCCCGACGACCTCCTCCGCAACATCGTCTCTCGCCTCCCCGTCAAGGACGCCGCCCGAACCGCCGCCATCGC
CTCTCAGTGGCGCCACCTCTGGCGCTCCACCCCGCTCGTCCTCAGCGACGTCGGCCTACTTCCCTCT-------------
--------GTGGTCGCCCGCGTCCTCGCAGACCACCCGGGCCCCTTCCAGGCCATCCACATCGCCCGTTGTAGGTTCGCG
TCCCACGAGCGTGAGCTCGCAGAGTGGCCGCGCCTCCTCGCCGCCAAGGGCATCCAGGACCTCGTCCTCGTCAACGAC--
----GTCATCGGCACCCAGTTC-ATCACCGACACCGTGCTCCTCCCAGCGGACATTTTCCGCTGCGCCTCACTCCAGCGC
CTCTTCCTGGGCTTCTTCAGGTTTCCGGACACCGCTG--GTCTCTCGCGCG----G-------------ACCCGACATC-
--CTGCCCCATCTTCGGGAGCTCAGCATGTTCACGACAGTCAT---CAACAACTGGGACCTCGAC--------TACATGC
TCGCTTGCTGCCCGGTCCTGGAGAAGCTCGCGTTCGTACTCAGCAATTCGCCCGATCTCATCCACCTCCGCAGCAAAAGC
CTCCAGTGTGTGCTCCTCTGGTTTTTCACGGCGGAGGAGGTCGCCGTGGTGGACGCCCCGCTCCTGAAGCGGCTCTTC--
--------------TTGG--------------------------------------------------------------
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-------
>chr7B_1089
--------------------------------------------------------------------------------
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---------------------------------------------------CGG---GGTACGACGGCGAGGACCGCATC
AGCGCCCTCCACGACGACCTCCTCCGTCACATCATCTCCCGCCTCCCCGTCACAGACGCCGCCCGCACCGCCTCTCTCGG
CCCCCGCTGGCGCCACCTGTGGCGCTCCACCCCTCTTGTCCTCGACGACGCCCACCTCCC---------CGAGCCCTCGC
GCGCCGCCTCCGTTCTCCGAGTCCTCGCCGACCACCCGGGCCCCTTCCGCGCCGTCCTCCTCACCGACTGCAGGCCCGCC
TCCCTGAACCGCGAGCTCGCCCACTGGCCGCGCCTCCTCGCCGCCAAGGGCACCCAGGAGCTCGCCCTCTTTAACAGGC-
--ACGTCTACCCGCA-------------------------CCTCCCCGCCGACATCCTCCGCTGCTCCTCGCTCCAGCGC
CTCTCACTGTCCTGGTGGAAGTTCCCCGTCGCC--------CTCTCCCGCA----G-------------CGCCGACGTCT
TTCTTCCCCACCTCCGGAAGCTCGACATGATAAGTATCAGCATGACCGAACAT---GACCTGGAT--------TACTTGC
TCGCTGCTAGCCCCGTCCTGCAGACCCTTACGCTGGCCC---GCAATTCGCCCAAGCGCGTCCATCTCCGCAGCCAAAGC
CTCCGGTGTGTGCTTCTTGGGCTGTCCACCATGGAGAAGTTCGCCGTGATGGACGCGCCACTCTTGGAGCGCCTCATCCT
TTTGGAGCCTTCTATTGCTGGGTGCGATCG------TG----------------TGAGGATCAAGATTGCTTGTGCACCC
AGCTTGCGAGTGCTCGGGTACCTGGAGCCAAGAGTTCACAAGCTGCAGATCGGTAACAATGTCATCGAGGTA--------
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>chr6B_1093
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----------------------------------------------------------CTACGACGGCGAGGACCGCATC
AGCGCCCTCCCCGACGACCTCCTCCGCAGCATCGTCTCACGCCTCCCCGTCAAGGACGCCGCCCGCACCGCCTCCCTCGC
CTCCCGCTGGCGCCACCTCTGGCGCTCCACCCCGCTCTCCCTCAACGACGCCGACCTGCC---------CCGAT------
------CCGTCGTTGCCCGCGTCCTTGCCGACCACCCGGGGCCCTTCCGCGCCATCCACATCACCCGCTGCCGGTTCGCG
TCCCACGAGCCTGAGATCGCAGAGTGGCCGCGCCTCTTCGCTGCCAATGGCATCCAGGACCTTGTCCTCGTCAACGAC--
----GCCGACCTCG-CCAGGTTCCCCCCCGACGCCGTGCGCCTCCCCGGGGACATCCTCCGCTGCGCCTCGCTCCAGCGC
CTCTTCCTGGGTTTCTTCACGTTCCCCGACACCGCTG--GTCTCTCCCGCC----G-------------AGCCGACGTC-
--CTGCCCCGCCTCCAGGAACTCAGCATGTTCACGACCAGCAT---CAGCGACGGGGACCTCGACTACATGGCTACATGC
TCGCTTGCAGCCCGGTTCTGGAGAAGCTCGCGTTCGTACTCACCTGTGCACCCGATTTCATCCACCTACGGAGCAGAAGC
CTCCGGTGCGTGCTCCTCTGGATTTTCATGGCAGACGAGGTTGCTGTGGTGGATGCCCCGCTCCTGGAGCGGCTCTTC--
--------------TTGCTGGAAGCGCCCCGTGCAGGAGGTGCTGAGAGTACTATGATGATCAAGATTGCTCATGCGCCC
AACCTGCAGGTGCTCGGCTTCTTGGAGCCAGGATTTCACCGGCTGCAGATCGGCGACAATGTCATTGAGGTA--------
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>chr3D_2114
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--------------------GTATGATTTCT-TTCCTT--TTGGTGCATCGCATTGCAGCCTGACACGAAGGTGAGCCCA
AGCACCATGGTTCCGAGTGTCAAGATTCTGGCCTTGAAGGTGAACTTTGGTGTCTTTGAGGAGGTCAGCATGCTGGCCAG
CTTCCTCAGATGCTTCCCCAACGTCGAAACGCTGCACATCGAGGTGACAACAATTTG-----------------TTCATT
CAGTCTCAA-TTTGGCATTCATATCGCCGTCAATTATATTTGGCTGTAAGGTGATTGAACTACTGTTGACTGCTATATAT
GACTTTTGCAGTCGGTCATAACCGATGAACCCACTGGAAGGCACCATGCCAGGTTCTGGCGAGAGCTCCGTCCTATCAAA
TGCCTGAAGTCGCATGTCAAGAAGATGATGATCCATGAGTTCCGTGGGGAGCAAAGCGAAATCAACTTCCTGAAGTTCGT
CGCCGGGAGTGCAGAGAAGCTGGGGACTTTGCTTCTGGCGATTACTGAAGAAATGTTTGCTTCGGC--------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------------------------------------
S---------------------------------------------------------------S---------------
----------------------------------------------------------S---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------S-----------------------
--------------------------------------------------------------------------------
-------------------------------S----S-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------SSS------------
----S-----------S------------------------------S-------S-----S------------------
-------S------------------------------SS------------S---------------------------
--------------------------------------------------------------------------------
------------------------------------------------------S-------------------------
--------S-----------------------------------------------------------------------
---------------------------------------SS---S--S-----------------S--------------
--------------------------------------------------------------------------------
------S----------------------------------------S--------------------------------
--------------------------------------------------------------------------------
----------------------------------------S-----------------------S---S-----------
---------------------------------------------------------------S----------------
----S---------------------------------------------------------------------------
---------------------------------S----------------------------------------------
--------------------------------------------S-----------------------------------
------------S-------------------------------------SS---S------------------------
-------------S-------------------------------------------------------------SSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------SS-------S----------S-------------S
-----S--------------S----S-------------------------S----------------------------
---S------------------------------------------------------------------S---------
-----------------------------------------S--------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------S----------------S----------------
-----------------------S-S------S---------------------------------S-------------
-------
>forward_357
--------------------------------------------------------------------------------
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-----------------CCTTGGCCTTGCTGTGTTTC-------------------------------------------
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>reverse_1417
--------------------------------------------------------------------------------
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--------------------------------------------------------AGACCTCGTCCTCGTCAACA----
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-------
>forward_455
--------------------------------------------------------------------------------
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-----------------------------------AATGACGGCAAGGACATCCC-------------------------
--------------------------------------------------------------------------------
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-------
>reverse_2128
--------------------------------------------------------------------------------
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-----------------------------------------------CGTGTCAAGTGATGCGTGAA-------------
--------------------------------------------------------------------------------
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-------
>forward_1552
--------------------------------------------------------------------------------
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------------TTCTGGAGGTTCCCGGACAA------------------------------------------------
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-------
>reverse_3386
--------------------------------------------------------------------------------
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-------------------------GGAGGACTTGATCAGGGCTG-----------------------------------
--------------------------------------------------------------------------------
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-------
