>input_sequence_43109
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---------------------AGT--------------------------------------------------------
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------------------------------------------------------------TCCGTTCACCCAGT------
-CCCAGTGCACCCAAGCAAATATCTCCCCAACCCCAAGCATACAAGCCGGAGCAGATTAGGCATCCAGACCGCGGTAAGA
ATCATCACCGCCGCGCACCCCGTACCAAGTTCTCGTGGC------------------------------ACCACCTCTGA
ATCTCACACCCCCGGAAGAGTAGAAGCAGACCAGAAGAGAAGAGGCGCGCGCG---CGCAGGAGGCTCTGAATGGCGCTT
CGCTGCTCCCTGCCCGCGACCTGTTCGACGTTTTGCCTCACACGAGCAGAGCACCCTAGTTCGCGTGCTCCCCCCGCGCG
CCTCGTCGTCAGCTTCGGCTCTTGCCCGGGACCCAGGCCGAGCCTGGGACCCGTGCTTGCCGCGCGCCCCTGGGCACTGC
GTGCGAGCGACCCCAAGGCCGGCCGGCTGGTGATCGGCGGCGGGCCGCGCAACGCCGACGCCGACTCCGACTCTGAAGAC
GAGGACGAAGGCCCCGTGCGGATGACGGACCAGGAGCGAAGGACGCTGCGGAGGAAGATACGGGAGATGATGGACCGGAT
GCCGGAGACGCAGGAGCTGACTGACCCGGAGGAGAAGAAGGCCAAGATGAGGGAGCTGCTGACCAAATACCAGCTGGTTG
TCGAGGAGGAGGACCCGGAGTGGCCCGAGGACGCCCAGGACGGCATGGGCTTCGGCCTCGACCAGTTCTTCGACAAGATC
ACCATCAAGCCTGAGAAGAGGGATGACGCCGACGACGATGATGCTATGGATGACGGCAAGAAGGAGGTGGTCTGGGAAGA
TGACAACTACATCAAGCCTGTCAGGGATGTCAAGACAAAGGATTGGGACGACACCGTGTTCACGGACTTCGGCCCGTTGA
TTGTGCTCGTGCATAACCGGTACAAGAGGTATGGTTCCGT-AGTTCTTGCAAAATGGTTGGTGCCATTTCATGTTTCAAG
TATCCTTTTCATATATGCTACTCCTACATCTGAGTGGTTCTCCCAAGTCTTGCAAAATGGTCGGTTACATTTCATGTTTC
AAGTATCCTTTTGGCCATATAGTAGCTTTATGA-----------------------------------------------
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------------------AACTTACAGGACGTGATGTATTACTTTGGTAAATCACCACAAATGTTCCTTGTGCAGACCT-
CAGGACAATGAGATGGCAAGAACTGAGCTCGTAAAGGCAATCGAGACGTTTTGGGAACACGATATGCCTTCACCAAGGGT
ACTACATACTTGTTCATGACTTTCTTCTGTAAATATAAATTCGGCGCTTCAGAGAG-------------TCACATTCTGA
ACTTCCAACCGTTGTTGTTCACCCGCAGTGTGTTGCGGTCGACGCCTGCGCGGAGCCAGACCTCGTGGCAGCTCTGAAGG
TGTCCGGTTTCCCTGAGTTGCTCTTCACCAATGCAGGGAAGATACTGCACCGAGAGAAAGGTATGCCTTGT---------
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CCGTTATTTACAC------GAATTCTCCTTCAAGACAGCTCTCATTCGATCATCAGGTTTGCTGATCCAAGATTCACTTG
TACTAATAGCTGTCCGGTCGGCCGAGGTGTTGGCGAGGATGATAGCCTTCTTCTACTACAAGGCGGCGAGACCACCTTGC
TTGAGCGAATCAGACGGCCAGGGGCAAGAGAAGGTCCCTCTGATGTCGTGATAGGAAGGATGGTTCGTGCTCGTACTAGT
AGTATTTTGCATCAGTGTAACTTTGCAGTTTACATAG------TACATCAAGAGTAGAGTTACTGCTACAAGGAATCCGA
ATTCTCGCCTGTGGCAATGCCTAACAGTTTGTGTATGATTCTATTCCTCATGCTGAATACACATGTGGCCACGTCCATCC
TTATGCTC------------------------------------------------------------------------
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>chr1B_1_TraesCS1B01G270800
CTTTCCAGAGACAGATGAGGTAGGCCAAGGACTGCTGGAGTCAGCGATGAGCCCATGGGTTGCAGCAGGCTCCAGTTTTG
CTGATTCAGTTTTGACAGAAGGTA---GAGGTCTTCAGCAAATAAGAAGAACCCAAGTTCTTCAGCCCGAGTTGTAACA-
--TCATTCTTTGCTCCCCTCCCAACGATTTATCATTCTTTCTTTCGCCACTGTACGGGTTTTGGCACCCTTATGTTAAAT
TCGGATTATGTATCATCACCAAAGCAGAACATAGGAGATACAAATTTCAAGAACCAAGACACTTCGTTCCAAACCGTACA
AGT-------------------------------------------------TCTGCTGACATGTTAATTCTTTGGATGC
TGCGGATGAATT--TATAGAAAAAAAAATAGCAGAGAAGTAGAAACCCAAGTG-TTGTTTCCGGCTGCCGTGTAATGCTT
CAATTGTTTTTTTAGGGGGGCTGCCGTGTAATGCTTCAATTGTTCTTTTAGGGGGATTTGTTCCATTTTCGTAATGTGTT
ACAGCTAACGATATCCGCCTTGTATGACCAAATTGTTTAGGGGGA-------GTATAGGGGTTCACAGTTTCGAAGGCCG
AATTTCGAATCTCTGCTCTTCCACTGCAGCTTGGTGTTTTTATTTGGTCATCCAAGGGACACTA-AGTCACACCTGACTG
ACAATTCCATTT-GCAAGGATGGACATCTTCAGGATCTCTGATATAAATGATTTTTTTTCTTGCCATTTTTGTGATTGAC
AAAAATAATTACAGTTGATCTTCCCTGATAACATTCG---ATATGTAGCTAAAATCACGACAAGAATTATGGAACATAAG
GGGTACATGGGTTCTTTTTCAAACATCTGAAATGCTCA------------------------------------------
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----------------------------AAATACAAATGAATTCTTTGAAACCAAGTCAAGTTTTCCCCACCCAGCAAAA
CCAGGTAAGGGGTAATTGGTAAACAGCTACTCCCTCCGTTTCATAATGTAAGACGTTTTTTTTTAACAGTAGGACCGGCC
GCCCCA-TCACGGTTCACTTCAGT--------------------------------------------------------
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------------------------------------------------------------TCCGTTCACCCAGT------
-CCCAGTGCACCCAAGCAAATATCTCCCCAACCCCAAGCATACAAGCCGGAGCAGATTAGGCATCCAGACCGCGGTAAGA
ATCATCACCGCCGCGCACCCCGTACCAAGTTCTCGTGGC------------------------------ACCACCTCTGA
ATCTCACACCCCCGGAAGAGTAGAAGCAGACCAGAAGAGAAGAGGCGCGCGCG---CGCAGGAGGCTCTGAATGGCGCTT
CGCTGCTCCCTGCCCGCGACCTGTTCGACGTTTTGCCTCACACGAGCAGAGCACCCTAGTTCGCGTGCTCCCCCCGCGCG
CCTCGTCGTCAGCTTCGGCTCTTGCCCGGGACCCAGGCCGAGCCTGGGACCCGTGCTTGCCGCGCGCCCCTGGGCACTGC
GTGCGAGCGACCCCAAGGCCGGCCGGCTGGTGATCGGCGGCGGGCCGCGCAACGCCGACGCCGACTCCGACTCTGAAGAC
GAGGACGAAGGCCCCGTGCGGATGACGGACCAGGAGCGAAGGACGCTGCGGAGGAAGATACGGGAGATGATGGACCGGAT
GCCGGAGACGCAGGAGCTGACTGACCCGGAGGAGAAGAAGGCCAAGATGAGGGAGCTGCTGACCAAATACCAGCTGGTTG
TCGAGGAGGAGGACCCGGAGTGGCCCGAGGACGCCCAGGACGGCATGGGCTTCGGCCTCGACCAGTTCTTCGACAAGATC
ACCATCAAGCCTGAGAAGAGGGATGACGCCGACGACGATGATGCTATGGATGACGGCAAGAAGGAGGTGGTCTGGGAAGA
TGACAACTACATCAAGCCTGTCAGGGATGTCAAGACAAAGGATTGGGACGACACCGTGTTCACGGACTTCGGCCCGTTGA
TTGTGCTCGTGCATAACCGGTACAAGAGGTATGGTTCCGT-AGTTCTTGCAAAATGGTTGGTGCCATTTCATGTTTCAAG
TATCCTTTTCATATATGCTACTCCTACATCTGAGTGGTTCTCCCAAGTCTTGCAAAATGGTCGGTTACATTTCATGTTTC
AAGTATCCTTTTGGCCATATAGTAGCTTTATGA-----------------------------------------------
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------------------AACTTACAGGACGTGATGTATTACTTTGGTAAATCACCACAAATGTTCCTTGTGCAGACCT-
CAGGACAATGAGATGGCAAGAACTGAGCTCGTAAAGGCAATCGAGACGTTTTGGGAACACGATATGCCTTCACCAAGGGT
ACTACATACTTGTTCATGACTTTCTTCTGTAAATATAAATTCGGCGCTTCAGAGAG-------------TCACATTCTGA
ACTTCCAACCGTTGTTGTTCACCCGCAGTGTGTTGCGGTCGACGCCTGCGCGGAGCCAGACCTCGTGGCAGCTCTGAAGG
TGTCCGGTTTCCCTGAGTTGCTCTTCACCAATGCAGGGAAGATACTGCACCGAGAGAAAGGTATGCCTTGT---------
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CCGTTATTTACAC------GAATTCTCCTTCAAGACAGCTCTCATTCGATCATCAGGTTTGCTGATCCAAGATTCACTTG
TACTAATAGCTGTCCGGTCGGCCGAGGTGTTGGCGAGGATGATAGCCTTCTTCTACTACAAGGCGGCGAGACCACCTTGC
TTGAGCGAATCAGACGGCCAGGGGCAAGAGAAGGTCCCTCTGATGTCGTGATAGGAAGGATGGTTCGTGCTCGTACTAGT
AGTATTTTGCATCAGTGTAACTTTGCAGTTTACATAG------TACATCAAGAGTAGAGTTACTGCTACAAGGAATCCGA
ATTCTCGCCTGTGGCAATGCCTAACAGTTTGTGTATGATTCTATTCCTCATGCTGAATACACATGTGGCCACGTCCATCC
TTATGCTCAGCATGTAAGTGAGCTGCCGGCAAAATTGATTATACTCTCTACTAAGATTTAGCAATGTTCTTCCGCTCCGT
TCCGGCGCAAGTTTCTTCTAGAGCACATCCCAAACATGCAAGCCA-----------------------------------
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-----------------------------------------------ATTTCAGAAAAAAAAAGGGTGC-----------
--------------------AACCATTTCAATTTGGCTGGC---------------------CGGGCCGGGTTCTCTTCA
GGCCCAGAATGAAATATGGACCGCCGCACGAGCCCAAGAGCCCGAAGAAAATTCCTCGCGAGAAGAGTAGTAACTCTATG
AAATTTCTCAAAGAGAAAAAATCACTGTATGTCACTAAACTTGAGCCGGTTGACAGTTTGGTACCACTACTTCAAGATAC
CCTAACTACGGTCCACGTACTTGCTCACACGGTTCACTTTGGTCTATATGTACGTTTTCGTGTACGTATTTGCTGACTTG
GCCGAGTCAGCGGCCGCCAGCTCGCTTTAACCGCCACCTGGTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNAACGGCATGACCTGGTCGGCCGCTCGCTCTCCTCTTCCTCTCCTCCCAACCCTAGCCCAACTCCCGTCCCCG
CTGCTGCAGCCATTGCCGACGTCTACGCCCTCCGCCGCCGCAACCATTGCCGACGCCCTCCTCCGCCGCCTCCGTCCCCG
CCGTCATGTCGTCTTCCAGCTC
>chr1D_1
CTTTCCAGAGACAGATGAGGTAGGCCAAGGACTGCTGGAGTCACCCATGAGCCCATCGGTTTCAGCGGGCTCCAGTTTGG
CTGATTCAGTTTTGACGGAAGGAAGAGGAGGTCTTCAGCAAATAAGAAGAACCCAAGTTCTTCAGCCTGAGTTGTAACAC
CATCATTCTTTGCTTCCCTCCCAACTATTTATCATTCTTTCTTCCGCCACTGCATGGGTTTTGGCACCCTTATGTTAAAT
TCAGATTATGTATCATCACGAAAGCAGAACATAGGAGATATGAGTTTCAAGAACCAAGACACTTCGTTCCATACTGTACA
AGTAAAAAAGTAGAAGAGGGGCCGAGTTTCGAAAAAAAA-AACTGTACAAGTTCTGCTGACATGTTAATTTTTTGGATGC
TGCGGATGAATTTATAAAAAAAAAATATTAGCAGAGAAGGGGAAACCCTAGTGTTTGTTTCTGGCTGTCGTGTAATGCTT
CAATTGTTTTTTC------------------------------------AGGGGGATTTGTTCCATTTTCGTAATGTGTT
ACAGCTAACGATATCCGCCTTGGATGACCAAATTGTTTAGGGGGACTGGGGAGTATATGGGTTCACAGTTTCGAAGGCCG
AATTTGGAATCTCTCCTGAC-----GCAGCTTGGTGTTTTAATTTGATCATCAAGG----------GTCACACCTGACTG
ACAATCCCATTTTGCAAGGATGGACATCTTCAGTATCTCTGATATAAATGATTTTTAA--TTGCCATTTTTGTGATTGAC
AAA--TAATTACAGGTGATCTTCCCCCATAACATCCG---ATATGTAACTAAAACCACGACAAGAATTATGGAACGGAAG
AAGTACATGAGTTCTTTTTCGAACATCTGAAATGCTCGACCAAATTGTTTAGGGGGACTGGGGAGTATATGGGTTCACAG
TTTCGAAGGCCGAATTTGGAATCTCTCCTGACGCAGCTTGGTGTTTTAATTTGATCATCAAGGGTCACACCTGACTGACA
ATCCCATTTTGCAAGGATGGACATCTTCAGTATCTCTGATATAAACGATTTTTAATTGCCATTTTTGTGATTGACAAATA
ATTACAGGTGATCTTCCCCTGTAACATCCGATGTGTAACTAAAACTACGACAAGAATTATGGAACGGAAGAAGTACATGA
GTTCTTTTTCGAACATTTGAAATGCTCGAAATAAAAATGAATTTTTAGGAACAAAGTCAAGCCCCAGTAATACCC-----
--------------------TTTTCTGTAAATAAAAGCGTATCGCAGCGGC-----------------GTGGGACCGGCC
GCCTCTCTCAGGGTTCACTTCGGGTGTGTTTGGTTGAAGAACCAACTGTCATGGAATGGAATGGTTCCATTCCAGAGGAA
CGGGCCCATTCCATTCATGTGTTTGGTAGTAGTAAAAGGGAGGAACGGGTTGGTTCCGTTCCGGTGTTTGGTTGGAAGCA
CGGAATGAAAAATGAAATGACATAAAATTCAAAATTTCAGTAGCATTTCGTTTGTATTTTCAAGAAAGACAGCACAACAA
TATATATTGACAAGCCGAAGATATAAATGACAGCACATATAACACAGTTTTCAACAAGGTGCATGTGTAGTTCACATACG
AAATTCCCAAAAGCAACCAAAGTACAATAGAGTCATACATGTCCAGTGCACATACTTCAGCCACACACGTTAAGTTCACA
TATGAAATCTCCAAAAGCCCGTAGGTGATTCGATCTCTTTCATGCATCGGCCCATAGGTAATCCGTGGTCTTTTTTTCCT
TATTATAGCCCGAACAATGACCACCATTGCAGCTAGTGCAACAAAAACAACAGCTCCCCTAACCATCTTTTTTCTTTTGT
TCATCTTCTTGACCATCTACAAGTGATGCATACAATAAAAAGTATCCAATGATGCTTACATCAACATATATATTGCAAAG
ATACACTGGACATCATGTATTTTGGTACAGATTAGGAAAAGAGACCACTGATTTTAACAACATAAAGCAACAAAAGTGAA
TCAAGAACAACCATGAGTCATCACAATAATCTCTCCATCTCTGTGTATCACTCTCGGCTGGGCATATCCATGAGCAGCAG
GAGCATATACAAGGGGAATGAATTGAGGTTTGTACCTTGAGATTGGGTTGTTCTGCTGGGCCTCTGGTACCGCTCTCAGC
CCGCCGGAAGCCGCCGCCCCGCTGCTATTCCTCTGCAAGCCACAAAACCCGTAGATCCAGATCGAGCCCCCCTGGTCTTT
CTGCAAATCGTGAGAGGAAAGAGAGGAGTCAGCGGGCAGAGAGGAAAGAAAGGAGGTGGCCGGCGGGGAAGGGATGGATT
GGCCGGCGGGGAAGGGAGGAATCGGCCGGCGCGGCTCAGATCATGGAGGGGGAGAGAGGAGGGGGAGGCGGCGCACCTGG
GAGTGAGAGGCGATAGGGCTGCGAGAGTGCGAGAGGGCGAGCGGTTCCGCGTGGTCCGGCCGTTTTCGAGGTCTCACCTC
GTTCCGCATCTGGGCCGAATATTCGGTCCGCGGGAACGAGTTGGTGGCGTCCCATATGTCCAACTGAACACGAGAACGAG
GCTTGGGAACGGGTCGGACCCATGCCATTCCAGTCCATGACCCCAACCAAACACATCCGATCCGTTCACTCGTCCGGTTC
GCCCAGTGCACCCAAGCAAATATCT------CCCCAAGCATACAAGCCGGAGCAGATTAGGCACAC----------AAGA
ATCATCACTGCCGCGAATCCCGTACCAAATTCATAAGCCAGTTCCCGCGGCATCGGCAGCGAGCCAGCGACCACCTCCGA
ATCTC-CACCCCAGGAAGAGTAGAAGCAGGCCAGAAGAGAAGGCGCGCGCGCGCAGGAGGCCAC-----GAATGGCGCTT
CGCTGTTCCCTGCCCGCGACCTGTTCGATGTTTTGCCCCAAACGGCCAGAGCACCCCAGTTGGCACGCGCTCCCTCCGCG
CTTCGTCGTCAGCTTCGGCTCTTGCCCGCGGTCCAGGCCGAGCCTGGGACCCGTGCTCGCCGCCCGCGCCTGGGCACTGC
GTGCGAGCGACCCCAAGGCTGGCCGGCTGGTGATCGGCGGCGGGCCGCGCAGCGCCGACCCCGACTCCGACTCCGAAGAC
GACGACGAAGGCCCCGTGCGGATGACGGACCAGGAGCGGAGGACGCTGCGGAGGAAGATACGGGAGATGATGGACCGGAT
GCCGGAGACGCGGGAGCTGACTGACCCGGAGGAGAAGAAGGCCAAGATGAGGGAGCTGCTGACCAAGTACGAGCTGGTTG
TCGAGGAGGAGGACCCGGAGTGGCCCGAGGACGCCCAGGACGGTATGGGCTTCGGCCTGGACCAGTTCTTCGACAAGATC
ACCATCAAGCCTGAGAAGAGGGATGACGCCGACGACGATGATGGGGTGGATGATGGCAAGAAGGAGGTGGTCTGGGAGGA
TGACAACTACATCAAGCCGGTCAGGGATGTCAAGACAAAGGATTGGGACGACACCGTGTTCACGGACTTCGGCCCGTTGA
TTGTGCTCGTGCATAACCGGTACAAGAGGTATGGTTCCGTCAGTTCTTGCAAAGTGGTTGGTGCCATTTCATGTTTCAGT
TATCCTTTTCATATATGCTAT---TACATCTGAATGGTTCTGTCAATTCTTGCAAAATGGTTTGTTAACTTTCATGTTTG
AAGTATCCTTTTGGCCATATAGTAGCTTTATGA-----------------------------------------------
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------------------AACTTACAGGGCGTGATGTATTACTTTGGTAAATCACCACAAATGTTCCTTGTGCAGACTT-
CAGGACAACGAGATGGCAAGAACTGAGCTCGTAAAGGCAATCGAGACGTTTTGGGAACACGATCTGCCTTCACCAAGAGT
ACTGCACACTTCTTAATGGCATTCTTCTGTAAATATAAATCCGTCGCAGTCGGCGCCTCAGTGAATCACTCACGTTCTGA
CCTCTG-ACCATTCTTGTTCACCCGCAGTGTGTTGCGGTCGATGCCTGCGCGGAGCCAGACCTCGTGGCCGCTCTGAAGG
TGTCCGGTTTCCCTGAGTTGCTCTTCACCAACGCAGGGAAGATACTGCACCGAGAGAAAGGTATACCTTGT---------
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CCGTTCTGTAGATGTAGATGAATACTCCTCCAATGTAACTCTCGTCCGGTCATCAGTTTTCCTGATCTGTAA-TCCCTTG
TTCTGATAGCTGTCCGGTCGGCCGAGGTGTTGGCGAGGATGATAGCCTTCTTTTACTACAAGGCCGCGAGACCACCTTGC
TTGAGCGAAACAGACGGCCAGGGGCAAGAGAAGGTCCCTCTGATGTCGTGAAAGGAAGGGTGGTTCGTGCTAGTAC---T
AGTATCTTGCCTCAGTATAACTTTCTAGTAT---------------ATCAAGAGTAGAGTTACTGTCACAAGGAACCTTA
ATTCTCACGTGTAACAATGCCTAACAGTCTGTGTATGATTCTGTTCGGCATGCTGGATAGCCATGTGATCACATCCCTCC
TTATGTTTAGCATGTAAG--------------------------------------------------------------
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>chr1A_1
CTTTCTAGAGACAAATGAGGTAGGCCGAGGACTGCTGGAGTCACCCATGAGCCCATCGGTTGCGGCGGGCTCCAGTTTGG
CTGATTTAGTTTTGACAGAAGGAAGAGGAGGTCTTCAGCAAATAAGAAGAACCCAAGTTCTTCACCCTGAGTTGTAACAC
CATCATTCTTTGCTCCCCTCCCGACTATTTATCATTCTTTCTTTCGCCAGTGTACGGGTTTTGGCACCCTTATGTTAAAT
TCAGATTATGTATCATCACGAAAGCAGAACATAGGAGATATGAATTTCAAGAAGCAAGACACTTCGTTCCAAACTGTACA
AGTAAAAAAACAGAAGAGGGGCCGAGTTTCGGAAAAAAAGAACTGTACAAGTTCTGCTGACATGTTAATTCTTTGGATGC
TGTGGATGAATTTATAGAAAAAAAA-ATTAGCAGAGAAGGGGAAACCCAAGTGTTTGTTTCTGGCTGCCGGGTAATGCTT
CAATTGTTTTTTTAGGGGGG------------------------------------TTTGTTCCATTTTCGTAATGTGTT
ACAGCTAACGGTATCGGCCTTGGATGACCAAATTGTTTAGGGGGT-------GTATACGGGTTCACAGTCTCGAATTCCG
AATTTGGAATCTCTGCTCTTCCACTGAAGCTTGGTGTTTTTGTTTGGTCATCCAAGGGACACTCCAGTCACACCTGACTG
ACAATCCCATTC-GCAAGGATGGACATCTTCAGGATCTCTGATATAAATGATTTTTTTTCTTGCCATTTTTGTGATAGAC
AAAAATAATTACA---GATCTCCCCCCATAACATTCTGATATATGTAACTAAAACCGCAACAAGAATTATGGAACGGAGG
GAGTACGTGAGTTATTTTTCAAACGTCTGAATTGCTCGAAATGCAAATGATTTTTTAGATG-------------------
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-----------------------------AATACAAATGAATTTTTTGGAACCAAGTCAAGTCCCC--------------
CCAGGCGAGGGTTAATTGGTTTTTCCGTAAATAAAAGCGTATTGCAGCGGC-----------------GTGGGGCCGGCC
GCCCCTCTCACGGTTCACTTCAGT--------------------------------------------------------
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------------------------------------------------------------TCCGTTCACTCGTCCGCT--
--------CACCCAAGCAAATATCT------CCCCAAGCATACGTGCCGGAGCAGATTGGGCATC------------AGA
ATCATCACTGCCGCGAATCCCGTACCAAATTCA-AAGCCAGTTCTCGCGGCATCGGCAGCGAGCCAGCAACCGCCTCCGA
ACCTC-CACCCGAGGAAGAGTAGAAGCAGGCCAGAAGAGAAGGCGCGCGCGCGCAGCGCAGGAGGCTCGGAATGGCGCTC
CGCTGCTCCCTGCCCGCGACCTGTTCGACGTTTTGCCTCACACGAGCAGAGCACCCCAGTTCGCGTGCTCTCCCCGCGCG
CCTCGTCGTCAGCTTCGGCTCTTGCCCGCGATCCAGGCCGAGCCTGGGACCCGTGCTCGCCGCGCGCCCCTGGGCACTGC
GTGCGAGCGACCCCAAGGCCGGGCGGCTGGTGATCGGCGGCGGGCCGCGCAGCGCCGACGCGGACACCGATTCTGACGAT
GACGACGACGGCCCCGTGCGGATGACGGACCAGGAGCGGAGGACGCTGCGGAGGAAGATACGGGAGATGATGGACCGGAT
GCCGGAGACGCAGGAGCTGACCGACCCGGAGGAGAAGAAGGCCAAGATGAGGGAGCTGCTGACCAAGTACCAGCTGGTTG
TCGAGGAGGAGGACCCGGAGTGGCCTGAGGACGCCCAGGACGGCATGGGCTTCGGCCTCGACCAGTTCTTCGACAAGATC
ACCATCAAGCCTGAGAAGAGGGATGACGCCGACGACGATGATGCGGTGGATGACGGCAAGAAGGAGGTGGTCTGGGAGGA
TGACAACTACATCAAGCCGGTCAGGGATGTCAGGACAAAGGATTGGGATGACACCGTGTTCACGGACTTCGGCCCGTTGA
TTGTGCTCGTGCATAACCGGTACAAGAGGTATGGTTCCGTCAGTTCTTGCAAAATGGTTGGTGCCATTTCATGTTTCAAG
TATCCTTTTCATATATGCTACTCCTACATCTGAATGTTTCTGTCAATTCTTGCAAAATTGTTGATGCCATTTCATGTTCC
AAGTATCCTTTTGGCCATATAGTAGCTTCATATGAAACTTGTGTTGGGCGTAATAAACCGCGGCGTCGCTCCTGGCGCGG
CTGGTGCGTGTATGGGCGCGCACCGGACGTGTCGGGCGCGTCGGGTCCGCGATGTGTGGGTGCGTAGGTGTGCGTGTGTG
CGTGCGTGAGCCAGCGCGTGTGTGCGCGGGGCCACGCCGGGCTGTTAGCGAGCGATCAGGAGGGGTAGATCGCGTCGGGC
GCGCTGGGAGGCCGTGGCGATCGCGTTCGGGCGCGGTGCATGGACGCGGCCAGAGCGCGGAGGACGTGGGGGAGTGGGTG
AGCGAGTGGGTGCAGGGCGAGGCCGTGCCGGCCGGTGCTCGCGGGTATAAAACCCTGGTTCCCCTCTGTAGCTAGTAGAC
ATGATCGAGTTCGTGCTTGAGGAAAGGAAAAAGCGTACGTGCGCTGGAAAAATTCCCGTGTCCACTGTTCTCTGAACTTC
TCTGAATCCCTTCTTCTTCGGTGAGCTCGAGCGACGGCGACAGAGAGAGCGAGGAGGAGCGCCGCGAGGGACTGGCGGTT
CCAACAATTGGCATCAGAGCCAGTTTCAGCTCAGGGCGCGCCGGCGACGTCGATCGTCCCGTACGCCGGCGGAGCGGGCG
GATCGCTACCGCAGTCAGTGCCACTGCTCACCGGCGACAACTACACGGCGTGGTCGATCAAGGTCGAGGCGAATCTCGAC
GCGGCCGGGCTGTGGGAGGCGGTGGTCGTGCCGGAGGACGCGGCGGCGGCCGTGATCGCGAAAAAGGACAAGCCGGCACG
GGCGTATCTGCTTGGCGCGCTCGCAGAGGACCTGCTGCTGCAGGTGGCGGCGAAGAGGACTGCCGCGGAGGTGTGGGCTG
CTCTGAAGGCGCGGTTCGTTGGCGCGGACCGCGTGCGGGCGGCGCGGCTGGGCACCTTGCGCGTGGAGTTCGAGCTCCTG
CGCATGGCGAGCGGCGACACGCTGGACGAGTTCGCCGGCAAGCTCGGTGGCATGGCGGCTCGCTACGCGGCGCTCGGCTT
GACGCTGGAGGACGCCGCGTTGGTGAAGAAGCTGCTCGACTCCGTGCCGGACCGCTTGTACGCGGCGGTGGCCGGGATCG
AGCAGTTTTGCGACGTGTCGACAATGCCGTTCGAGGAAGCACTCGGGCGGCTGAAGGCGTTCGACGAACGGCTCCGATGG
CGTGGACAGGCAGGCGGCGAGCGGGCGGACGGTGAGCAGCTCATGCTCAGCGCGGCACAGTTGCGGGCGCGCGAGCGGCG
CCGGGGCGGTGCACGCGGAGAGGACGACGACGACGGCGCGGCCAGCACAGCATCAGGCGGAGGGAACAACCGTCGCGGGA
AGTGCTACAAGTGCGGCAAGCGGGGTCACTTCAAGCGTGACTGCCCGCAGTGGAAGAAGGCGCCGGCGCCGGAGCGTGCA
CTGCTGGTCGACGGCGACGTCGAGGACGGCGGGCTGCTCTGAGCCGCGGCTTAGGGCGCGAGTGTTGGGCGTAATAAACC
GCGGCGTCGCTCCTGGCGCGGCTGGTGCGTGTATGGGCGCGCACCGGACGTGTCGGGCGCGTCGGGTCCGCGATGTGTGG
GTGCGTAGGTGTGCGTGTGTGCGTGCGTGAGCCAGCGCATGTGTGCGCGGGGCCACGCCGGGCTGTTAGCGAGCGATCAG
GAGGGGTAGATCGCGTCGGGCGCGCTGGGAGGCCGTGGCGATCGCGTTCGGGCGCGGTGCGTGGACGCGGCCAGAGCGCG
GAGGACGTGGGGGAGTGGGTGAGCGAGTGGGTGCAGGGCGAGGCCGTGCAGGCCGGTGCTCGCGGGTATAAAACCCTGGT
TCCCCTCTGTAGCTAGTAGACATGATCGAGTTCGTGCTCGAGGAAAGGAAAAAGCGTACGTGCGCTGGAAAAATTCCCGT
GTCCACTGTCTTCTCTGAATCCCTTCTTCTTCGGTGAGCTCGAGCAACGGCGACAGAGAGAGCGAGGAGGAGCGCCGCGA
GGGACTGGCGGTTCCAACAACTTGCAGGGCGTGCTGTATTACTTTGGTAAATCACGATAAATGTTCCTTGTTGCAGACCA
CAGGACAATGAGATGGCAAGAACTGAGCTCGTAAAGGCCATCGAGACGTTTTGGGAACACGATCTGCCTTCACCAAGAGT
AGTACATACTTCTTCATGGCATTCTTCTGTAAATATAAATCCGCCGCAGTCGGCGCTTCAGAG------TCACATTCTGA
ACTTCCAACTGTTCTTGGTCACCCGCAGTGTGTTGCAGTCGACGCCTGCGCGGAGCCAGACCTCGTGGCCGCTCTGAAGG
TGTCCGGTTTCCCTGAGTTGCTCTTCACCAATGCAGGGAAGATACTGCACCGAGAGAAAGGTATGCCTTGTGGACGCGGA
GTTTCTGCACCCGAGCTCAAATGAGCTCGGGTGAACAGTAAAATCAAAACTAAATCAATTTTTTTTTAAAAATAATCCAA
TTTTTTTTGGGAGAAACATTGACAAAAGTTCTAAGTGCTTGCAAAAATTCACCATGAAATCACATTTTTAGAAGGTGTGG
CAAAAAAACAAAATCAGTACTCTGAAAAAGCTACTTTCAAAAGCATTTTGGAGCACTGAATTTGTTTTTTTTTGCCACGC
TTTACAGGAATGTGATTTCATGATGAATTTTTGCAAGCACTTAGACCTTTTGTCAATGTTTCTCCCAAAAATAATTGGAA
TTTTTTGATTTTTTTTTTGATTTTACTGTTCACCGAGCTCAAATGAGCTCGGGAGCAGAAAGGCACTTTCGATGCCTTGT
CCGTTATTTACAC------AAATTCTCCTTCAAGACAGCTCTCATTCGGTCATCAGGTTTACTGATCCAAGA-TCACTTG
TTCTAATAGCTGTCCGGTCGGCCGAGGTGCTGGCGAGGATGATAGCCTTCTTCTACTACAAGGCGGTGAGACCACCTTGC
TTGAGCGAATCAGACGGCCAGGGGCAAGAGAAGGTCCCTCTGATGTCGTGAAAGGAAGGGTGGTTCGTGCTGGTAC---T
AGTATTTTGCATCAGTGTAACTTTGGATTACATAGTAGTACTATACATCAGGAGTAGAGTTACTGCTACAAGGAACCTTA
ATTCTCACGTGTGACAATGCCTAACAGTTTGTGTATGATTCTGTTCCTCATGCTGGATAGCCATGTGACCACATCCCTCC
TTGTGTTCAGCATGTAAGATTACCCT-------------------------TAAGATTCAGCAACGTTCTTCCGCTCCCT
TCCGGCGCAAATTTCTTCTAGAGCACAGCCCAAACATGCAAAAGTCATTTATGAGGAATGCTCTTTCATTTGTCGTAATT
TTATTTCTGTTAGCTTTCGTCATCACCCTAGGGAAGCCAATATGACGGCAAATTTGTTAGCTACGAAGTTGGAGCCCTCG
AGAACTCTTGTTTGGCAGAACGAGGCCTTTTGCTCTTTATTCGATGTATTATCAAACGATGTAGCCCTATTTTCACATAA
AATATAAACTACCATGATAGCATTTCCCTAAAAAAACATGCAAAGCCATTTCAAAAAAAAATAATTAGGGTGCAAACCAT
GACAATTTGTTTTTTTAGAAAACCATTTAAATTTGGCTGGCACTGTGCGAATAAATCATAACCGGGCCGGGTTCTCCTCG
GGCCCAGAGCGAAACACGGGCCGCCGCACGAGCCCAAGAGCCCGAAGAAAATTTCTCGCGAGAAGAGTAGTAACTCTACG
AAAT----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------
>SNPs
-------------------------------------------S-S----------S---------S-----------S-
----------------------S--------------------------------------------S------------
-------------------------S------------------------------------------------------
--S----------------S--------------------SS--------------------------------S-----
--------------------------------------------------------------------------------
----------------S-S------S-S-----------SS--------------------S------------------
--------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------------------
----------------------S----------------------------------S----------------------
-----S---------------------------------------------------------S----------------
-----S--------------------------------------------------------------------------
--------------S----------SS--------------------S------S--------------------SS---
-S-------S---------------------------S------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------S----S-------------SSS-SSS-SS-SSSSSSS
-----SS----S--------SSSSSSS--SSSSSSSSSS-SSSSS-SSSSSSSSSSSSSSSSSSSSSS--S---------
-----S--------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------------------------------------------------------------S-SSS------
-------------------------SSSSSS-----------------------------------SSSSSSSSSS----
--------S------S-S----------S---SSSS-S---------------------------------------S--
-----S------S----------------S------------SS------------------------S-----------
--------------------------------------------------------S-------------S---------
----------------------------S--S-------------------------S----------------------
---------------------------------------------------S----------------------------
--S-----------------------------------S-----------------------------------------
------------------------------------------------------------------S-------------
--------------------------------------------------------------------------------
--------------------------------------------SS-------------------------------S--
------------------S-------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------S-------SS---S--------------S------------------
--------------------------------------------------------------------------------
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----------------------------S---------------------------------------------------
---------------------------------------------------------------S-------------S--
-----------S------S-S-------------------S--S---SSSS-SSSS------------------------
-------------S-------------------------------------------------------S----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------S-----------S-----------S-------
-S------------------------------------------------------------------------------
---------------------------------------------------S-------S-----------S----SSS-
-------------------------S---S--S-SSS--------------------------------------S-SS-
------S-S----S----------------------------S------------S---SS------S----S---S---
-----S------------SSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSS-------S-----S-------------S-
----------S----------------S-------------SSSS-----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------S-------S-SSSS-S-----------
----------------------------S-----------------------------------------------S--S
--------SS----S-S--S---------------------------------S------------------------S-
----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSS
>forward_1278
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------AAGTTTTCCCCACCCAGCAA--
--------------------------------------------------------------------------------
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----------------------
>reverse_6980
--------------------------------------------------------------------------------
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-------------------GAGCTGCCGGCAAAATTGAT-----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------
