>input_sequence_43076
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------ATGGAGCCCAAGAGG
TCCTCGCCCCAGGCCCAGCCCCAGCCGCAGCCGCGCGCGGCGACTAAGGAGTCGCCTCCCCGCGCCGCCGCCGCCGCCGC
CGCCGTCGCCGACTCGCCGCTCAGCAGCCTGTTCCACCCGGCGCCGCACGGGGTACCCGTCTCTTTCCTCACGCCTTCTC
CCTGTTCGGTGTTATGTCTCTGTGTCTC-----------GGCCGGCGCCTGCGCTGCCGCCCGACGTGATCTCTCGCGGG
ATTGCGGCGGAGCAGACGCCGGAG---------------------------TAGATCGGATTCGTCTTGTTCTTAATCCT
TCCTCGTTCGCGCGATGATTTTAGTTTTCGTATATGAGCCGCCGTCTGTTGGACTGAATATGCGAGAATTTTGGTAGAC-
TTTTGATCTAGATACGCCCGTCTCTCCAAGTGGACACCGATTATCTTACAGTATCCCCGCCGTAATAAGCCTTATTAATT
T-GGGGATTCATGCTGCGATGTTTTGTTACGGGCGAAGGATTCATATTGTGATGTTGCCATC---TAATTTGGACGTTTC
CCGTTTTTGTCTTGTTTTCAAGGTAAACGGCAAAGAGCAGGACTTGTACGCCATTCTTTTCAAGGGGCAGAACGGCAATG
CTCAGGCCAGCATGACAGGTAGTTGCACAACTCCCTCCTCTCGTCT----------CGTCTCGTCTCATATTCTCCTTTT
TGCCATTCCGGTACTACG--TACTGTGGAAATGGAACGGAATAGTACGTCACACATCTATATCAATGAA------CTGTC
TTCTCTTTCAAGAAACAGCAGGTTACTTAGTGCCGAGGAAGCGTTGGAAAATTTCCAAACTCAAAAACATTTAATCCCTC
AAAAGAAAATCACAAAAGCACTTAAAGCATGTATAACTCTTGCCCGCATCAGTTGATCAGCAAAGCCCACCCACCTTTAC
TTTCTAAAGGAGA--AGAGATGAAATTTCACTGACCGATAAGTTTTGAAACTTTGGAGCTTTGATCTTTGGTTGTAATTT
TCATACTTGCACAAGGTTAAGTACAGCGTGTACATGTTGGCTATCTTCAATCAACCAGAAAATTCTATTTCTGTTCTAAA
AAAAAGAAATTTCTATTTCTTATTCTTGTCCCCACAAAA--AAAATCTTTGAGAAAGTGCAAAAGCCTTGCATCTTTATG
CATTATATAATTGAAGGAAAAAGTTATAGGCAAACCTACGAGTAGGTCAGTTTCAATCAGAACAAACGCCACGACCCTAA
GCGCTAAACTCTGCCGATAGTCATGTCAACACATTATTGGTTGTTTCTTTCATAAAGTAATATCGTCTTGGTGATCTATC
TTGCTTGGTTTGAATCACTGAGAAATGCAACGACAGAAAAATAACTAACATATTTATTTGTCTTACAGATGGTAAATCCC
AGTGGAGTCCTGCTAGGGGCCGCACAACATATACCAAGGATAACAAGTATGACTCGGTTGGTACATCGTCTTGTTTTGGT
TCTTCTGTGCACTATGGTGGCCGAGAATATTATGGCTGCTCTGCACCCAAGCAAGCTGCGGAATACAGTGATGTAAGAAA
TTGCTAAACAAAAAGCATAACTCATGCTTATAATTCATAAGTACTTTCACTTTTTTTTAATCAGCACTTTAGGCAACCAA
GGTTTTAAACACTTTT-TTGTTCATTTCAGTACAAGGTGGATAAGAAGGATCCTGTCGCAGATTCTCATGGCGATTGGTG
GCAAGGTATAGTGTTGTTGTATATTC---------------------------GGACATATGTTATGACTGAGTTATATG
GTTGACTGATGTATTTATTTATTTTGTTTCCAGGCTCGTTTTACTACTAA------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------
>chr3A_1_TraesCS3A01G364200
TAAGATCATAGAAATTTGAAGGTTTATTA---ATCCTATAGAGCCCCTTTCAACTTTATTTTGTATATATATATAAATAA
ATACCCAAATCTCCCTCAAAATATTCGCTTGCTCGTTCGGTGCAACCAACCTACCTTTTGTGCAAATCCAATTACATGGA
GATCCAGTGAATATGACATGACATGAATTCTGGATCTTCTCTATTTAATGT----------TTCCCGAATCCTCTGTCAA
GAGGATATTCTACATTTAATTTTAGATCTTCTCCATTCAGACGGTTCCATTTTCTTCCCGCAAATAAAAAGGAAAAAAAG
T----AATCCCCCGAACGCAGTTTGGTCTTTACACAGAACCCCCAACCCCCGTCAGTTTCGACGGAATTCCGTCTTGCGG
GCCCACGTGTCATCGACACACGACCCCCGTTAGTTTCGACGGAATCCCGTCTCGCGGGCCCACGTGTCATAGACACACGT
TCCGTCAGTCCAGCTACCCGTCAGCACTCC--GCGCCGTAAAGCCTCCCCCCTCTGTCGAGCTCGACCCGGTGTAGCACA
ACGAACGGAGACGTCCGGCGATGGA-TCTCTTCCGTCGCGCATCAGCGTCACGTCCTTTTCGCCGCCGCCCATCGTCCCC
TCCGACTGGTTGGCGGCACACCCACCCACGCTCGCCACCGCGGCGCGGCCGACGGCAACAGCTGAACCTGAACGGCGGCG
GGACGCGTTCACTACCGAGGGGCGGGGCATCTATCCGCCACAGTTTCGCGCGTAGGCCCCTCGAGATCCACGTAATGGCG
GCGCACACCCCCGCGGCCTGGGCCCTTTAAATGCGGGGGCACGCATGGAGGCCGGAGCAGGGCGCCACGAGT-----CGA
GTAGTTGAGCAGTAGCGCTTGCCTGGACTCCCCGTCTCCTCCTCCCTCCTCCCGCCGCCGCCTACGGCACAACCGCCCCG
TTCACGTGCCCTAATCCCCAGCGGCAGCTCCCCCTCCCCATCCGCCCGTCCGTCCGTCCCCCGAAATGGAGCCCAAGAGG
TCCTCGCCCCAGGCCCAGCCCCAGCCGCAGCCGCGCGCGGCGACTAAGGAGTCGCCTCCCCGCGCCGCCGCCGCCGCCGC
CGCCGTCGCCGACTCGCCGCTCAGCAGCCTGTTCCACCCGGCGCCGCACGGGGTACCCGTCTCTTTCCTCACGCCTTCTC
CCTGTTCGGTGTTATGTCTCTGTGTCTC-----------GGCCGGCGCCTGCGCTGCCGCCCGACGTGATCTCTCGCGGG
ATTGCGGCGGAGCAGACGCCGGAG---------------------------TAGATCGGATTCGTCTTGTTCTTAATCCT
TCCTCGTTCGCGCGATGATTTTAGTTTTCGTATATGAGCCGCCGTCTGTTGGACTGAATATGCGAGAATTTTGGTAGAC-
TTTTGATCTAGATACGCCCGTCTCTCCAAGTGGACACCGATTATCTTACAGTATCCCCGCCGTAATAAGCCTTATTAATT
T-GGGGATTCATGCTGCGATGTTTTGTTACGGGCGAAGGATTCATATTGTGATGTTGCCATC---TAATTTGGACGTTTC
CCGTTTTTGTCTTGTTTTCAAGGTAAACGGCAAAGAGCAGGACTTGTACGCCATTCTTTTCAAGGGGCAGAACGGCAATG
CTCAGGCCAGCATGACAGGTAGTTGCACAACTCCCTCCTCTCGTCT----------CGTCTCGTCTCATATTCTCCTTTT
TGCCATTCCGGTACTACG--TACTGTGGAAATGGAACGGAATAGTACGTCACACATCTATATCAATGAA------CTGTC
TTCTCTTTCAAGAAACAGCAGGTTACTTAGTGCCGAGGAAGCGTTGGAAAATTTCCAAACTCAAAAACATTTAATCCCTC
AAAAGAAAATCACAAAAGCACTTAAAGCATGTATAACTCTTGCCCGCATCAGTTGATCAGCAAAGCCCACCCACCTTTAC
TTTCTAAAGGAGA--AGAGATGAAATTTCACTGACCGATAAGTTTTGAAACTTTGGAGCTTTGATCTTTGGTTGTAATTT
TCATACTTGCACAAGGTTAAGTACAGCGTGTACATGTTGGCTATCTTCAATCAACCAGAAAATTCTATTTCTGTTCTAAA
AAAAAGAAATTTCTATTTCTTATTCTTGTCCCCACAAAA--AAAATCTTTGAGAAAGTGCAAAAGCCTTGCATCTTTATG
CATTATATAATTGAAGGAAAAAGTTATAGGCAAACCTACGAGTAGGTCAGTTTCAATCAGAACAAACGCCACGACCCTAA
GCGCTAAACTCTGCCGATAGTCATGTCAACACATTATTGGTTGTTTCTTTCATAAAGTAATATCGTCTTGGTGATCTATC
TTGCTTGGTTTGAATCACTGAGAAATGCAACGACAGAAAAATAACTAACATATTTATTTGTCTTACAGATGGTAAATCCC
AGTGGAGTCCTGCTAGGGGCCGCACAACATATACCAAGGATAACAAGTATGACTCGGTTGGTACATCGTCTTGTTTTGGT
TCTTCTGTGCACTATGGTGGCCGAGAATATTATGGCTGCTCTGCACCCAAGCAAGCTGCGGAATACAGTGATGTAAGAAA
TTGCTAAACAAAAAGCATAACTCATGCTTATAATTCATAAGTACTTTCACTTTTTTTTAATCAGCACTTTAGGCAACCAA
GGTTTTAAACACTTTT-TTGTTCATTTCAGTACAAGGTGGATAAGAAGGATCCTGTCGCAGATTCTCATGGCGATTGGTG
GCAAGGTATAGTGTTGTTGTATATTC---------------------------GGACATATGTTATGACTGAGTTATATG
GTTGACTGATGTATTTATTTATTTTGTTTCCAGGCTCGTTTTACTACTAAGCAAGAGCTTGGTGTCCTCTCCCTTTACGA
ACAAGGTAAAAACGACTAAACAAGGACCTTA----CTATTGGACATTGGTTACATTATTATGGTTTGGTCTTGCTCTCTG
CTTACGTGTGATATGCTATATATTATTCAGCTTACATAGGCAATCGATAATTTTCTGGAAAGCGATAGGGGGT-GTATGC
CCACCTGAGCAACTGATATCCACTTTTGCTCACTTCGCCTCTGCATCAGTTATCGTGTTCACAGATGCTGTTCTTTATCA
GAAAGCGAACATATTCTCGCATACTTTGTTTCAGAAGTCAGAATAGTTAATATGTACAGTAGTAAACTTTGAATTACTCA
AAGCTTAATATGGGATGGAATTTAGTTATTAGTGATATGAAATATTTCAC--TCTCACCTAATTTTTCGTGTGAAATTTG
CCCAAACC-----------------------------------CAAATTCTTCTCCCAGCTCTTCAGAGAGTATATTTCT
TCTCTTCCATTCCTATTTGTAATATCATCATATACGATGAAGAAATTTTGTTTATTCACCTGTGTTGCCAGTGTCAAGGC
TTTAACGTCAATGGCGAATTATTTTTCTCTAAGTAACTAGCTGTGGGGTTGGTGTACAGTACAATGATGTAGTTGTGGTT
GAGATAAGATAACAAAGGTCACCGGGAAGAAAAGTAATGTCCTGGGTAAAAACCGTAGTTAACGCCCTACTTTTTATGTC
TTAATCACTATCTTTAGGGAGTTTAGGGTCAAACAATTAGTTGCCTTAAATGTAGTCTGAGGACCTAGCGTTGTATCCAG
TTCACTTTGGTTGAGGAAGCAACAGCACAAGTATGCTCACCACTTGCGCGAATGTTCCATCAAGTTGTATTGCTTGCTAT
ACCATTACTTTCGTCTTTAGAAACAGAA---TTATTCCAAAAGAGGATACTGCTTAGGCCGTAGTGTAAATCACTCTTGA
GGATAGTCATATTTTTGTATTATCGTAGAAC-AGTACTGAATTTCTAAAAAAAGAC
>chr3B_2
-AAGATCATAGAAATTTGAAGGTTTATTA---ATCCTATAGAGCCCCTTTCCACTTTATTTTGTATATATATATATATAA
ACACCCAAATCTCCCTCAAAATATTCGTTTGTTCGTTCGGTGCAACCAACCTACCTTTTGTGCAAATCCAGCTACATGGA
GATCCACTGAATATGACATGGCATTAATTTTGGATCACTCATATTTAATGA----------TTTACGAATCCTCTATCAA
GAGGATATTCTACATTTAATTTTAGATCTTCTCCATTCAGAGGATTCCATTTTCTCCCCGAAAAAAAAAAAGAAAAAAAA
ACGAACGC----------CCTTTTGGTCTTTGCACAGAACCCCAACC---------------------------------
-------------------------CACGTTAGTTTCGACGGAATTCCGTCCCACGGGCCCACGTGTCATGGACATACGT
TCCGTCAGTCCAGCTTCCCGTCAGCACACTCAGCGCCGTAAAGCCTCCCCCCTCTGTCAAGCTCGACCCGGTGCAGTACA
ACGAACGGAGACGTCCGGCGATGGG-TCTCTTCCGTCGTGTATCAGCGTCACGTCCTTTTCGCCGCCGCCCGTCGTCTCC
TCCCTCCGACTGGCAGCACACCTACCCACGTTCGCCACCGCGGCCCGGCCGACGGCAACTGCTGAACCTGAACGGCGGCG
CGACGCGTTCACTACCGAGGGGCGG-GCATCTATCCGCCACAGTTTCGCGCGTAGGCCCCTCGAGATCCACGTAATGACG
GCCCACACCCCCCCGGCCCGGGTCCTTTAAATGC-GGGGCACGCATGGAGGCCGGAGCAGACCGCCACGAGT-----CGA
GTAGTTGAGCAGTAGCGCTTGCCTAGACTCCCCGTCTCCTCCTCCCTCCTCCCGCCGCCGCCTACGACACAACCGCCCCG
TTCACGTGCCCTAATCCTCAGCGGCAGCTCCTCCTC----TCCGTCCGTCCGTCCGTCCCCCGAAATGGAGCCCAAGAGG
TCCTCGCCCCAGGCGCAGCC------CCAGCCGCGCGCGGCGACTAAGAAGTCGCCTCCCCGCGCTGCCGCCGCCGACGC
CGCCATCGCCGACTCGCCGCTCAGCAGCCTGTTCCACCCGGCGCCGCACGGGGTACCCGTCTCTTTCCTCACGCCTTCTC
CCTGTTCGGTGTTATGTCTATGTCACTATGTGGTTCGGTGGCCGGCGTCCGTGCTGCCGCCCGACGTGATCTCTCGCGTG
ATTGCGGCGGGGCAGACGG----------------GCAGGCCCTTGATTGCTAGATCGGATTTGTCTTGTTATTGATCCT
TCCTCGTTCGCGCTATGATTTTAGTTTTCGTATGACG-CC-CCGTCTGTTGGAGTGAATATGCGAGAATTTTGGTAGAC-
TTTTGATCTAGATACGCCCGTCTCTCCAAGTGGATACCGATTATCTTAGAGTATCCCGT-TGTAATAAGCCTTATTAATT
TGGGGGATTCATGCTGTGATGTTTTCTTACGGGTGAAGGATGCATATTGTGATGTTGCCATC---TAATTTGGACGTTTC
CCCTTTTTGTTTTGTTTTCAAGGTAAACGGCAAAGAGCAGGACTTGTACGCCATTCTCTTCAAGGGGCAGAACGGCAATG
CTCAGGCTAGCATGACAGGTAGTTGCACAACTCTCTCCTCTCGTCT----------CGTCTCGTCTCATATTCTCCTTTT
TGCCATTCCGGTACTAGTACTACCGTGGAAATGGAACGGAATAGTACGTCACACATCTATATCAATGAA------CTGTT
TTCTCTTTCAAGAAATAGCAGGTTACTTAGTGCCGAGGAAGCGTTGGAAAATTTCCAAACTCAAAAACATTTAATCCCTC
GAAAGAAAATCACAAAAGCATTTAAAGCATGTATAACTCTTGTCTGCATCAGTTGATCAGCAAAGCCCACCTACCTTTAC
TTTCAAAAGGAGA--AGAGATATAATTTCACTGCCATATAAGTTTTGAAACTTTCGAGCCTTCATCTTTGGTTGCAATTT
TCATACTTGTACAAGCTCAAGTACAGCGTGTACATGTTGGCTATCTTCAACCAACC------------------------
----AGAAATTTCTATTTCTTATTCTTGTCCCCTCAAAA-AAAAATCTTTGAGAATGTGCAAAAGCCTTGCATCTTTATG
CATTATATAATTGAAGGAAAAAATT---GACAAGCCTACGAGTAGGCCAGTTTCAATCACAACAAACGCCACAACCCTAA
GCGCTAAACTCTGCTGTTAGTCATGTCAACACATTATGGGTTGTTTCTTTCGTAAAGTAATATCGTCTTGGTGATCTATC
TTGCTTGGTTTGAATCACTGAGAAATGCAACGACAGAAAAATGACCAACATATTGATTTGTCTTACAGATGGTAAATCCC
AGTGGAGTCCTGCTAGGGGCCGCACAACATATACCAAGGATATCAAGTATGACTCGGTTGGTACATCATCTTGTTTTGGT
TCTTCTGTGCACTATGGTGGCCGAGAATATTATGGCAGCTCTGCACCTAAGCAATCCGCGGAATACAGTGATGTAAGAAA
TTGCTAAACAAAAAGCATAACTCATGCTTATAGTTCACAAGTACTTTCACTTTTTTT-AATCAGCACTTTAGGCAACCAA
GGTTTTGAACGCTTTTGTTTTTCGTTTCAGTACAAGGTGGATAAGAAGGATCCTGTCGCAGATTCTCATGGCGATTGGTG
GCAAGGTATAATGTTGTTGTATATTTGGACATATGTTATTTTTGAAGCTGTTTGGACATATGTTATGATTGAGTTATATG
GTTGACTGATGTATTTATTTATTTTGTTACCAGGCTCGTTTTACTACTAAGCAAGAGCTTGGTGTCCTCTCCCTTTTCGA
ACAAGGTAAAAAC--------AAGGACCTTACTAGCTATTGGAAATTGGTTACATTATTATGGTTTGGTCTTGCTCTCTG
CTTACTTGTGATATGCTATACATTATTCAGCTTACATAGGCAATCGATAATTGTCTGGAAAGCGATAGGGGGGCGTATGC
CCACCTGAGCAACTGATATCCACTTTTGCTCACTTCGCCTCCGCATCAGTTATCGTGTTCACAGATGCTGATCTTTATCA
GAAAGCGAACATATTGTCGCATACTTTGTTTCAGAAGTCAGAATAGTTAATACATACAGTAGTAAACTTTGAATTACTCG
AAGCTTAATATGGGATAGAATTTAGTTACTAGTGATATGAAATATTTCACATTCTCACCTGTC----TGTGTGAAATTTG
CCCAAACCAAAATTCAAAAAAAAAAATTAAAATTGCCCAAACCCAAATTCTTCTCCCAGTTCTCTAGAGAGTATATTTCT
TCTCTTCCTTTCCTATTTATAATATCACCATATACGAAGAAC---TTTTATTTATTCACCCGTGTTGCCAGTGTCAAGGC
TTTAACGTCAATGGCAAATTATTTTTCTCTAAGTAACTAGCTGTGGGGTTGCTGTACAGTACAATGATGTAGTTGTGGTT
GAGATAAGATAACAAAGATCACTTGGAAGAATAGTAACGTCCTGGGTAAAAACCGTAGTTAACGCCCTACTTTTTATGTC
ATAATCACTACGTTTAGGGAGTTTAGGGTCAAACAATTAGTTGCCTTAAATGTAGTCTGAGGACCTAGCGTTGTATCCAG
TTCAGTTTGGGTGAGAAAGCAACAGCAGAAGTATGCTCACCACTTGTGGGGATGTTCCTTTAAGTTGTATTGCTTGCTAT
GCCATTACTTTCGT------------------------------------------------------------------
--------------------------------------------------------
>chr3D_4
---GATCGTAGAAATTTGAAGGTTTATTATTAATCCTATAGAGCCCCTTTTCACTTTATTTTGTGTATATAATATTCAAA
TCTCA---------CTCAAAATATTTGTTTGTTCGTTCAGTGCAACCAACCTGCC--TTGTGCAAATCCAATTACATAGA
GATCCAGTGAATATGACATGACATTAATTTTGGATCTTCTCCATTCAAGGATTCCATTTTCTTCCCGAATCCTCTGTTAA
GAGGATATTCTACATTTAATTTTAGATCTTCTCCATTCA-AGGATTCCATTTTCTTCCCGCAAAAAAAAACGAAAAAGAA
AAAAAAATCCCCCGAACGCCGTTTGGTTTTTGCACAGAACCCCAACT---------------------------------
-------------------------CCCGTTAGTTTCGACGGAATTCCGTCTCGCGGGCCCACGCGTCATCGACACA-GT
TCCGTCAGTCCAGCTTCCCGTCAGCACTTTCAGCGCCGTAAAGCCTCCCCCCTCGGTCGAGCTCGACCCGGTGCAGTACA
ACGAACGGAGACGTCCGGCGATGGGATCTCTTCCGTCGCGCATCAGCGTCACGTCCTTTTCGCCGCCGCCCGTCGTCCCC
TCCCTCCGACTGGCGGCACGCCCACCCACGTTCGCCACCGCGGCCCGGCCGACGGCAACAGCTGAACCTGAACGGCGGCG
CGACGCGTTCACTACCGAGGGGCGG-GCATCTATCCGCCACAGTTTCGCGCGTAGGCCCCTCGAGATCCACGTAATGGCG
GCCCACACCCCCGCGGCCCGGGCCCTTTAAATGC-GGGGCACGCATGGAGGCCGGGGCAGAGCGCCACGAGTCGGAACGA
GTAGTTGAGCAGTAGCGCTTGCCTGGACTCCCCGTCTCCTCCTCCCTCCTCCCGCCGCCGCCTACGACACAACCGCCGCG
TTCACGTGCCCTAATCCTCAGCGGCAGCTCCTCCTTTCCATCCGCCCGTCCGTCCGTCCCCCGAAATGGAGCCCAAGAGG
TCCTCGCCCCAGGCCCAGCC------GCAGCCGCGCGCGGCGACTAAGAAGTCGCCTCCCCGCGCCGCCGCCGCCGCCGA
CGCCGTCGCCGACTCGCCGCTCAGCAGCCTGTTCCACCCGGCACCGCACGGGGTACCCGTCTCTTCCCTCACGCCTTCTC
CCTGTTCGGTGTTATGTCTCCGTGGTTC-----------GGCCGGCGTCCGTGCTGCCGCCCGACGTGATCTCTCGCGTG
ATTGCGGCGGTGCAGACGGCTCTCCTCGCGCGCGAGCAGGGCGTCGATTGCTAGATCGGATTCCCCTTGTTTTTAATCCT
TCCTTGCTCGCGCGATGATTTTAGTTTTCTCGCGAGGCCC-CCGTCTGCTGGACTGAATATGCGAGAATTTTGGTAGACT
TTTTGATCTAGATACGCCCTTCTCTCCAAGTGGATACCGATTATCTT-GAGTATCCCGT-CGTAATAGGCCTTATTAATT
AGGGGGATTCATGCTGCGATGTTTTCTTACGGGCAAAGGATTCATATTGTGATGTTGCCATCTACTAATTTGGACGTTTC
CCGTTTTTGTCTTGTTTTCAAGGTAAACGGCAAAGAGCAGGACTTGTACGCCATTCTTTTCAAGGGGCAGAACGGCAATG
CTCAGGCCAGCATGACAGGTAGTTGCACAACTCCCTCCTCTCGTCTCGTCTCGTCTCGTCTCGTCTCATATTCTCCTTTT
TGCCATTCCGGTACTACG--TACTGTGGAAATGGAACGGAATAGTACGTCACACATCTATACCAATGAAGAAGAACTGTT
TTCTCTTTCAACAAACTGCAGGCTATTTAGTGCCGAGGAAGCGTTGGAAAATTTCCAAACTCAAAAACATTTAATCCCTC
AAAAGAAAATCTCAAAAGCATTTAAAGCATGTATAACTCTTGTCCGCTG-AGTTGACCAGCAAAGCCCACCTACCTTTAC
CTTCAAAAGGAGAAGAGAGATAAAATTTCACTGCCAGATAAGTTTTGAAACTTTGGAGCTTTCATCTTTGGTTGCAGTCT
TCATACTTGTACAAGGTGAAGTACAGCGTGAACATGTTAGCTATCTTCAACCAACT------------------------
----AGAAATTTTTATTTCTTATTCTTGTCCCCACAAAATAAAAATCTTTGAGAAAGTGCAAAAGCCTTGCATCTTTATG
CATTATATAATTGAAGGAAAAAGTTATAGACAAGCCTACGAGTAGGCCAGTTTCAATCAGAACAAAGGCCACAACCCTAA
GCGCTAAACTCTGCCGATAGTCATGTCCACACATTATGGGTTGTTTCTTTCGTAAAGTAATATCGTCTTGGTGATCTATC
TTGCTTGGTTTGAATCACTGAGAAATGCAACGACCGAAAAATAACTAACATATTGATTTGTCTTACAGATGGTAAATCCC
AGTGGAGTCCTGCTAGGGGCCGCACAACATATACCAAGGATAACAAGTATGACTCGGTTGGTACGTCGTCTTGTTTTGGT
TCTTCTGTGCACTATGGTGGCCGAGAATATTACGGCAGCTCTGCACCTAAGCAAGCCACGGAATACAGTGATGTAAGAAA
TCGCTAAACAAAAAGCTTAACTCATGCTTATAATTCATATGTACTTTCACTTT--TT-AATCAGCGCTTTAGGCAACCAA
GGTTTTGAACACCTTT-TTGTTCATTTCAGTACAAGGTGGATAAGAAGGATCCTGTCGCAGATTCTCATGGCGATTGGTG
GCAAGGTATAGTGTTGTATA------------------------------TTTGGGCATATATTATGACTGAGTTATATG
GTTGACTGATGTATTTATTTATTTTGTTGCCAGGCTCGTTTTACTACTAAGCAAGAGCTTGGTGTCCTCTCCCTTTTCGA
ACAAGGTAAAACG---------AGGACCTTA----CTATTGGACATTGGTTACATTATTATGGTTTGGTCTTGCTCTCTG
CTTACATGTGATATGCTATATATTATTCAGCTTACATAGGTAATCGATAATTTTCTGGAAAGCGATAGGGGGGCGTATGC
CCACCTGAGCAACTCATATCCACTTTTGCTCACTTCGCCTCTGCATCAGTTACCGTGTTCACAGATGCTGTTCTTTATCA
GAAAGCGAGCATATTCTCCCATACTTTGTTTCAGAAGTCAGAATAGTTAATACGTACAGTAGTAAACTTCGAATTACTCG
AAGCTTAATATGGGATGGAATTTAGTTATTAGTGATATCAAATATTTCACACTCTCACCTAATTTTTTGTGTGAAATTTG
CCCAAACC-----------------------------------CAAATTCTTCTCCCAGTTCTCCAGAGAGTATATTTCT
TCTC-TCCTTTCCTATTTATAATATCATCATATACGAAGAAGAAATTTTGTTTATTCACCCGTGTTGCCAGTGTCAAGGC
TTTAATGTCAATGGCGATTTTTTT---------TAACAAGCTGTGGGGTTGGTGTACAGTATAATGATGTAGTTGTGGTT
GAGATAAGATAACAAAGGTCACTGGGAAGAAAAGAAATGTCCTGGGTAAAAACCGTAGTTAACCCCCTACTTTTTATGTC
ATAATCACTATATTTAGGGACTTTAGGT--AAGCAATTAGTTGCCTTAAATGTAGTCCGAGGACTTT--GTTGTATCCAG
TTCAGTTTGGGTGAGAAAGCAACAGCAGAAGTATGCTCACCACTTGTGCGGATGTTCCTTTAAGTTGTATTGCTTGCAAT
ACCATTACTTTCGTCTTGAGAAACAGAATTATTACTCCAAAAGAGGATACGGCTCAGGCAGTAGTGTAAATCACTCTCGA
GGATCGTCATACTTTTGTATTATCATAAAACAAGTACTGAATTTCTAAAAAAGAC-
>SNPs
S--------------------------------------------------S-----------------------S----
-S-------------------------S---S------------------------------------------------
------------------------S----S--------------------S-----------------------------
-----------------------------------------S-S--------------------S-----S--------S
S------------------S-----------S-----------S-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSS--------------------S------------------------S---------
---------------S-------------S-------------------------------------------S--S---
------------------------S----------------------------------------------S--------
---SS-S-SS--------------------S-------------S-----------------------------------
S------------------------S------------------------------------------------------
--S---------------S---------------S-------------------------S-------------------
------------------------------------------------------------------S-------------
-----------------S-------------S----S-------------------------------------------
--------------------SSSSSS----------------------S-------------------------------
--------------------------------------------------------------------------------
------------------------S----------------------S-S-S--------------------------S-
----------S-------S-SSSS-----------------------------------------------S--------
---------------------------------SS-SS--S---------------------------------------
----------------------------------S-------------S--------SSS--------------------
-------------------------S------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------S
--------------------------------------------------------------------------------
--------------------S---------------------S----------------------------S--------
----S----------------S-----------S-S--------------------------S-----------S-----
---------S-------S--------------------------------S-----SSSSSSSSSSSSSSSSSSSSSSSS
SSSS----------------------------------------------------------------------------
-----------------------------S---S------------S-------------------------S-------
-------------------------------------S-------------S----------------------------
------------------------------------------------------S-------------------------
--------------------------------------------------------------------------------
------------------------------------S----------S--------S-----------------------
---------------------------------------------------------S----------------------
------S-------------------------------------------------------------------------
-------------------------S------------------------------------------------------
----------------------------S-----------------------------------------------S---
-------------SSSSSSSS-----------------------------------------------------------
-----S------------------------------------------------------------------S-------
--------------------------------------------------------------------------------
----------------------------------------------------S--------------------------S
-------------------------------------------------------------------S------------
-----------------------------------------------------------S---S----------------
--------S---------S------------------S----------------------S-------------------
--------------------------------------------------------------------------------
----------------------S---------------------------------------------------------
S----------S--------------------------------------------------------------------
----S-----S----S-----------S------------------S---S-------S-S-------------------
-----------------S----------------S---------------S---S----S-----------------S--
----S------S------------S--S------------------------SSSS
>forward_340
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
AAAGTAATCCCCCGAACGCA------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------
>reverse_1963
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------CCCGCATCAGTTGATCAGCA------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------
>forward_369
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------TTACACAGAACCCCCAACCC-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------
>reverse_2313
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------GACCCTAA
GCGCTAAACTCTG-------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------
>forward_496
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------ACGT
TCCGTCAGTCCAGCTA----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------
>reverse_2455
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------TATTTGTCTTACAGATGGTAAATCCC
A-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------
>forward_1992
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------TTGATCAGCAAAGCCCACCC--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------
>reverse_3113
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------TGTATGCC
CACCTGAGCAAC--------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------
