>input_sequence_43039
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-----------------------------ATGGAGGGCGCCCCGAGGGCAAACACGCGGCGCCGCCGGCTGGTCGAGAGG
GGATCAGATCGCCTGGCCTTCATCACCGGCCAGACGCGCGACCTCCCCCCCGACCCCTACCCT------GGTAACCGCCG
CCACAGGGGTCCGATTTCTAGTTTTGGGGT-GTATCCAGATCGACTACCTGTTGCGTTCACGTCAGATTGATTGGGCTAG
ATTGTAGCCGTGTTTAGGAATTGACCATCGAATTCAGTTTCGGGGGATTTTTCCCGGTTTATGCGTTGTAGGGCTATTCG
ATTAGTTGCTAGATTTAGAATATCTGGTGCCAGGTACAAATCATGGATTGCAGG---TTTCCTACCGCGGAATC----TT
ACGTTTCTGGATCATGCACCGTGCGAATTTCGTAATTT--AGAGTGTTGGAAGCGGAGATTATGTTGGATGCATACCCTT
G---TTCTTCTTTAGATATTTTCTCTGCCTAATAGGACGCGAATTTGTGTTGGTATATGGCCAAACCATTCATGGGGAGC
TTCTACCTGAAGTATTGATGGTTCTTTCGGGGAATTGGTTAGAAAACTTCA-------CATCACTGTATTTTGGCGATTA
TTAAGGTGCGTTGGTACATACTATCGCTTAAACCATCTCATGAGCACTGCTCATGAGAACCTTCTCCCCAAACAAGGAAG
TATTGAGCATCGTTGCATCAGCTCATTGAGCACGTCTCCATGACTCTTCTTAGAAGAGTTGCGATTAAGAGATTCCTCTA
TGTTGCATCTTAATCAGATAATCCTTAATCAGTTATCAAACTGCCCTTTCCTATGTTTTTGCTAGTTTTATGAGCAACTC
TTTGGGTCTTC------------TATCACAATGTTGTCTTCGACCCACTAGATTGCTTTCTGGTCCATAATTCTCCCTGC
CTGTCCCTTGTAGCCTCGCAATGAGCACACGATTACTTTCTTACGGACTCCTTGCGTTCTTATTTCGTACCTTATTAGTT
GATGCCAGTTGAACCATTTGAATGCTCTTTGCCTTATTGCATACAAATCTGCCTAAATGTTAAAACATACCCTATGGCTT
CTTAACCACCATGTGATCAAAGTAGTTGCCATCTTGCAGATTCACCGGTTGCCGAGCCCCGTCTACAACCCAAGCATAAG
AGCCACAGTAGCGAAGGCGACCTACTCCACAAATTCAACGCAAGCAGCGCAGTTTCTGAGATCCAGCCAGTATATGAGCC
GCCGTTGCTGCGGAGCCGTGATGAT---GAAACCCTCAACAAGAGGACTTATGATTATGGAGCAGCAACTGTGCAGCCTA
AGAGGGACATGGAAATGAGACCCAG------------------------------------------------ATCTGTG
CCTCCGAGGGACATGGGATCTGTGCCTCCGAGGGACATGGAAATGAGACCCAGATCCGTGCCCCCAAGCCAGCCTAACCA
AGCAGACGACTCATCTTGGTCTCTGGAAACTCTGAAGCAACTCGTGGATTTCACGCCGCAGGAGATCACCCAGGCCATCT
CAGCCACAGAGCTCAACCGCTGCTTAGCATCCATTCTCATCGCCTTCATTGTGGTTCTTTCGAACTGGGGGCTGGACGTT
GGTGGCACCATCAGCAGAGTACTGGTTTGCACAAGGCCGCTCCTGTTCCTCATCATAACGAACGTAACCATCGTCATGTC
GTTGCTGATGGAGAACAGGGACCCCAATGCGAGGGGCAGACAGGCCGGCATCAGCCTTGGTTCTGATGGCTTAGGGCTGA
TGCTGGAGCTCGGGATGCTGCTACAGAAGGCGTCTGAAGCTATGCTGATGGACTTCAGCATTTGCGCTGTCATCATGATC
TGTTTTCTTTGA--------------------------------------------------------------------
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>chr3A_1_TraesCS3A01G375600
GCCGCCATCATCCACCGCTTCATTGCGCCCTGCACTGTCAACCGACACCACCTTTCGGGGCCGCTGCCCAACATACCACC
GCTCACTCTCAAGCTACAACGCTGCATGACCCGGCCGCCCGTAACCCACGCTGCACAGGATGATCGCCCGCAGACCAGGG
CCGCCGCACCACTCCGGGGTCCTCTTATTCGTTTGAATATGTGTTTTCCATTC-TCTGTTCACCTGG--GTGATTGGACT
TTGCACAAGTGCTGATCCATCGACAGATTAGCTGCACGGCCGCACCCGACGATCCGGCGTCCTTCTGAAGTCTTAACGCG
ACCGGGGAGCCGGGCATA--------------------------------------------------------------
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-------------TAACTCGGGCCAGTTGAGGCGTACAGGCGCATAAATGGGCACTGGCTCGCTTGGCAGGCACGACTCG
AGCACCACTGATCCGGCGGCCAAAATGCGTCGTATGGCCAGTTTTAATGAGGCACGGAGATAAGTCAATGAACCATATAT
GGCTCATACTCTGCACCCGCGGCATGTGACGGCCTTTACG----------------------------------------
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-------------------CCCCGCCGGAATCTTTTAATTCGAGATTTATATGCGCGAGCGAACCCGGAGAAAGAA-AAA
-AAGAGGTGGCGTGCAACGCACA---------------------------------------------------------
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---CCGACGACAGGGCTGCACCTGTACGGAAAATGCAGAGGCATGCGGTTTGGACTTCTGGATGATCACTTTTTTTTTGG
ATACAAGTGTGGGCGATCACGTTTTTCTTTTAGGTGCAAAAAATTGA---------------------------------
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---------------------------------------------------------GTCTGGACGTTCACGTGCTCTGA
TGTGCTTCACGATTCCCGTGGTCCATCTGAGCGATGGTAGGCCCAATAGAGTTGGGCTCA----------------CTAT
GGGCTAAGGTGGGCCGATTTAAGGG---TCTTTTCTGGCCAGGGGACGCGTATACCGATTAATTTCCGCTTCGAGGAAAA
GAGGTTGGAATTCGGAAAAGAAAAAGGAGAGGCGACGGGGTGGAGCAGCA-GGGGGAGAGAAAGTAGTGGCCTGGGCGTG
CTCCGCTCGCGCGACGAGGGAGGGAGGCGATGGAGGGCGCCCCGAGGGCAAACACGCGGCGCCGCCGGCTGGTCGAGAGG
GGATCAGATCGCCTGGCCTTCATCACCGGCCAGACGCGCGACCTCCCCCCCGACCCCTACCCT------GGTAACCGCCG
CCACAGGGGTCCGATTTCTAGTTTTGGGGT-GTATCCAGATCGACTACCTGTTGCGTTCACGTCAGATTGATTGGGCTAG
ATTGTAGCCGTGTTTAGGAATTGACCATCGAATTCAGTTTCGGGGGATTTTTCCCGGTTTATGCGTTGTAGGGCTATTCG
ATTAGTTGCTAGATTTAGAATATCTGGTGCCAGGTACAAATCATGGATTGCAGG---TTTCCTACCGCGGAATC----TT
ACGTTTCTGGATCATGCACCGTGCGAATTTCGTAATTT--AGAGTGTTGGAAGCGGAGATTATGTTGGATGCATACCCTT
G---TTCTTCTTTAGATATTTTCTCTGCCTAATAGGACGCGAATTTGTGTTGGTATATGGCCAAACCATTCATGGGGAGC
TTCTACCTGAAGTATTGATGGTTCTTTCGGGGAATTGGTTAGAAAACTTCA-------CATCACTGTATTTTGGCGATTA
TTAAGGTGCGTTGGTACATACTATCGCTTAAACCATCTCATGAGCACTGCTCATGAGAACCTTCTCCCCAAACAAGGAAG
TATTGAGCATCGTTGCATCAGCTCATTGAGCACGTCTCCATGACTCTTCTTAGAAGAGTTGCGATTAAGAGATTCCTCTA
TGTTGCATCTTAATCAGATAATCCTTAATCAGTTATCAAACTGCCCTTTCCTATGTTTTTGCTAGTTTTATGAGCAACTC
TTTGGGTCTTC------------TATCACAATGTTGTCTTCGACCCACTAGATTGCTTTCTGGTCCATAATTCTCCCTGC
CTGTCCCTTGTAGCCTCGCAATGAGCACACGATTACTTTCTTACGGACTCCTTGCGTTCTTATTTCGTACCTTATTAGTT
GATGCCAGTTGAACCATTTGAATGCTCTTTGCCTTATTGCATACAAATCTGCCTAAATGTTAAAACATACCCTATGGCTT
CTTAACCACCATGTGATCAAAGTAGTTGCCATCTTGCAGATTCACCGGTTGCCGAGCCCCGTCTACAACCCAAGCATAAG
AGCCACAGTAGCGAAGGCGACCTACTCCACAAATTCAACGCAAGCAGCGCAGTTTCTGAGATCCAGCCAGTATATGAGCC
GCCGTTGCTGCGGAGCCGTGATGAT---GAAACCCTCAACAAGAGGACTTATGATTATGGAGCAGCAACTGTGCAGCCTA
AGAGGGACATGGAAATGAGACCCAG------------------------------------------------ATCTGTG
CCTCCGAGGGACATGGGATCTGTGCCTCCGAGGGACATGGAAATGAGACCCAGATCCGTGCCCCCAAGCCAGCCTAACCA
AGCAGACGACTCATCTTGGTCTCTGGAAACTCTGAAGCAACTCGTGGATTTCACGCCGCAGGAGATCACCCAGGCCATCT
CAGCCACAGAGCTCAACCGCTGCTTAGCATCCATTCTCATCGCCTTCATTGTGGTTCTTTCGAACTGGGGGCTGGACGTT
GGTGGCACCATCAGCAGAGTACTGGTTTGCACAAGGCCGCTCCTGTTCCTCATCATAACGAACGTAACCATCGTCATGTC
GTTGCTGATGGAGAACAGGGACCCCAATGCGAGGGGCAGACAGGCCGGCATCAGCCTTGGTTCTGATGGCTTAGGGCTGA
TGCTGGAGCTCGGGATGCTGCTACAGAAGGCGTCTGAAGCTATGCTGATGGACTTCAGCATTTGCGCTGTCATCATGATC
TGTTTTCTTTGATTCTGAACACCCTGGTCATGTTTTCTTGGATTCTGAAGAGAATTTAGATAGTTTGCGGAAGCGCATGT
AGAATTTCTTTTTTCTTTTGTTGCTATATCGTACTCTTATGTCTATTTATCTGATCTTGTAACATCGTCTCTGGCTGGAT
TTTGATTTACTTTTGTACCACTGTTTCGTTTGTATATACGCTTATACAGTTCACTGGGACCGAGTTCATCCAGGATT---
------------------CCAGGCCTAGTATCTTCCAAGAGATTTT--TACTTGCGTAATACTCCCTCCATTTTTATTTA
CTCTGCATATAAACATTTATT----------------------------------------ATAACAAATCTATATGATG
TGAAAGTACATTCAATAATGAAATGAATTTAATGGTATTGATTTTTATTGTATATATATTAATATTTTTCTTTATAAACT
TTGTCGAAATTTACAAATGTTGACTTTGACCAAAACTAATACGCGGACTAAATAAGAATGGAGGGAGTATTGTTCTGTGT
GTATTTATACACTTGTAATGTTGTACTATTCGTTGTTGTATGGGGGATCCATCACTAATGTGTGGATTATCAGTTTATCG
GCCAGAAAACATTCTAAACATTTCTTCTGAGAAATTCTTTTCTTGCTATGATACTCTGATGTCTATTTATTGGATCTTGT
AACAACCTCGGAATTTTGATTTACT---GTACTATTGTTTCGTGTCTACATACAGTTCACTGGGACCTTTTCGCGCCTTT
TTTTCGTATCTTTATACAACTGTACACAAGTCTTGCACGTGTATGTAGACCGTCAATTTAACTTATATAAAATATATTGT
TTAGCATAAAAATTCTATCATTAGAAAATAGAATATCTAATGTCTTTAATGATATTTTTTTTGCAATGTATGCATCTTAT
TAAGTTGATCAAATTAACGACCTAGGTATATGTGCAAGACTTGTAAACTGAGATAAAGAGAGTATTATTTTTAAGCATGT
CTCTCTTTTGTGCAGTAGTAATAATAACAATAATAATA
>chr3D_183
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----------------------TCTTCTTCGTTTGAATATGTGTTTTCTCCCATTCTGTTTACCTGTGTGTGATTGGACT
TTGCACAAGTGCTGATCCATCGATGGATTAGCTGGACGGTCGCAACCGACGATCCGGCGTCCCTCTAAAC------CGCG
ACCGGGGAACCGGCCATATAACTTGGGGCTATTTTTTTAAATAATACATTTTTTTAATTAATTTTCATAAATATTACGCT
GGATAAAAAAATTCAAAAATAATACACCGTCGGCCCGTTGTAGGCCGACTGGGCCTAGTTGGCCCACAGCAGACCGATTG
GACTCCAGTCGGCCTACAGTTGGCCGAGTGGCCCCTATCGGCCCACTGTGCGCTGATTGGGTCCTGTCGGCCAGCTGTAG
GCCGACTGGAGCTAATTGGCTCGCTGTGGGCTAATTGTTTTTGCAAAAAAAGTAGGCATAAAAAATATATGTTTAAAAAA
ATATTAATTATGTAATTCAAAAATGTTAAACGTGTATAAAAAAATGTTCCTGATGTATACAAAAAATGTACAATATATAT
GCAAAAAAGTTGACATAAAAAATATGTTTTAAAAAGTGTTAAGCATGTATTTAAAAATTGTTAAATGTGTGTATAAAACA
TGTTCCTTATTTATACAAAAAATATAGAATGTGTATGAAAAAAAAGTTGACACCAAAAAAATATGTTTGAAAAAAAATGT
TAATCATGTATTTGAAAAAATGTTCCTTATCTATACAAAAAATATAGAATGTGTATGAAAAAAGTTGACACCAAAAAATA
TGTTTGAAAAAAATGTTAATCATGTATTTGAAAAAATGTTTAACGAGTACACAAAAATGTTTCATGTATTGGAATGAAAG
GTTAAACTTGTATAAAAAAATGTTTCAGCTCCGGATCCGGTATGGGAGCATCACGGACCTAAGTATGATTGGTTGCTCTT
TTTGTATGGAACTGGAACATTTTTTTCAAACTTATTTTTTTGGTCTCAACTTTTTTTCATACACATTCTATATTTTTTTG
AATAGATAAGAAACATTTTTTATACACACATTTAACAATTTTTAATCATGTATTTGAAAAAATGTCAACTTTTCAAACGT
ATTTTTTGGTGTCAACTTTTTTCATACACATTCTATATTTTTTGTATAAATAAGGAACATTTTTTATACACACATTTAAC
AACTTTAAATACATGCTTAACACTTTTTAAAACATATTTTTTATGTCAAATTTTTTGCATATATATTGTACATTTTTTGT
ATACATCAGGAACATTTTTTTATACACGTTTAACATTTTTTAATTACATAATTAACATTTTTTAAACATATTTTTTATGC
CTACTTTTTTTTGCAAAAATAATTAGCCCACAGCGAGCTAATTAGCTCCAGTCGGCCCACAGTGGGCCGACAGGACCCAA
TCAGCCCACAGTGGGCCGACAGGGGCCCCGACTGGAGTCCAATCGCCCTGCTGTGGGCCGACTAGGCCCAGTCGGCCTGC
ACCGGGCCGACGGTGTATTATTTTTGAAAAAAATTTACCCAGCATAATATTTATGAAAATTAATTAAAAATGTATTATTT
AAAAAAAATTAGCTAACTCGGGCCAATGGAGGCGTACAGGCGCGTAAATGGGCACTGGCTCGCTTGGCAGGCACGACTCG
AGCACCACTAATCAAGAGGCCAAAATGCGTCGTATGGCCAGTTTTAATGAGGCACAGAGATAAGTCAATGAACCATATAT
GGCTCGTGCTCTGCACCCGCGGCATGTGACGGATCCGCCTTGCCTGCTCCCTTCTCATGCTTCCATCTGTGCTTTCACTT
CATCCTACGGTTGTCTTTTTTTTTTTCCTTTGTAATCTAATCATCTCCCCTCCTGATTTTAAGAGGGTGGGACCGGACGT
TATTTTGTTCCAATCAAATCAAGCCACGTATGCGGGAGCACGGATGGGCACACGCCCGACGAGCAGGCTAGTCTCGTCCG
CATGTCACGGCCTTTACGCCCCCGCCAGAATCTTTTAATTCGAGATTTAT--GCGCGAGCCAACCGGAAGAAGAAAGAAA
-AAGAGGTGGCGTGCAATGCACACCGACGACAGGGAAAAAAATTATATGAGACCAGGTCTCACGGTTAGCAGGTGAGACC
CGCCCTGATGGATGACACGTGGCATTCACAAATCTCAAAGCATCTAATCTCTCCCCCCTGATTTCAAGTGGGGATGGGGT
GGATGCTTTATGATTTGTGAATGCCATGTGTCATCCATCAGGACGGGTCTCACGTGAGACCTGGTCTCATAGAATTCTTT
TCCCCGACGACAGGGCTGCACCTGTACGGAAAATGCAGAGAAGAATTGGCCACCAGTA------------------TTTT
TTGAGAACTTTCGCTTCAAGGAAAAGAATTGGCCACC-------------------------------------------
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----------AGTAAATTGGCTACAGTCTACGAGCAGAGACATTCGGTGGTTTGGACGTCTGGACGATCACGTGCTCTG-
--TGCTTTACGATTCGCACAACGAACCCTCTGGGCTTAGGCCTGTACTCGGGCCGGTTAAGGTCAAACCACTATGGCTAT
GGGCTAAGGTGGGCCGGTTTAAGGTTTGTTTTTTTCAGCCAGGAGAAGAGTATATCGACGATTTTTCCCTTA-AGGAAAA
GAGGTTGGAATTCGGAAAAGAAA--GGAGAGGCGAGGGGGTGGAGCAGCA-GGG--AGAGAAAGTAGTGGCCTGCGCGTG
CACGCA-CGCGCGACGAGGGAGGGAGGCGATGGAGGGCGCCCCGAGGGCAAACACGCGGCGCCGGCGGCTGGTCGAGAGG
GGATCAGATCGCCTGGCCTTCATCACCGGCCAGACGCGCGACCTCCCCCCCGACCCCGACCCCTACCCAGGTAACCGCCG
CCGCAGGGGACCGATTTCCAGTTTCGGGGTAATATCCAGATCGCCTGCCTGCTGCGTTCACGCCAGATTGATTGGGCTAG
ATTGTAGCCGTGTCTAGGAATTGACCATTGAATTCAGTTTCGGGGGATTTTTCCCGGTTTATGCGTTGTAGGGCTATTCG
ATTAGTTGCTAGATTTAGAATATCTGGTGCCAGGCACAGATTATGGATTTTGCAGGTTTTCCTGCCGCGGAATCAATCTT
AGGTTTCTGGATCACGCACCATGGGAGTTTCGTAATTT--AGAGTGTTGGAAGCGGAGATTATGCTGGATGCGTAGCCTT
GTGCTTCTTCTTCAGATATTTTCCCTGCCTGATAGGACGCGAATGTGTGTTGGTATATGGCCAAGCCATTCATGGGGAGC
TTCTACCTGAAGTATTGATGCTTCTTTCGGGGAATTGGTTAGAAAAATTCACCGTATGCATCACTGCATTTTGGCGATTA
TTAAGGTGTGTTGGTACA---TATGGCTTAAACCAT-------------CTCATGAGAACCTTCTCCCCAGACCAGGAGG
TATTGAGCATCGTTGCATCAGCTCATTGAGCACGTCTCTGTGACTCTTCTTAGAAGAGTTGCGATTAAGAGATTCCTCTA
TGGTGCATCTTAATCAGACAATCGTTAATCAGCTATCAAAGTGCCCTTTCCTATGTTTTTGCTAGTTTTATGAGCAACTC
TTTGGGTCTTCCTGTCTTATATCTATCACGATGTCGTCTTCGACCCACTAGATTGCTTTCTGGTCCATAATTCTCCCTGT
CTGTCCCTTGTAGCCTCGCAATGAGCACACGAT-----GCTTACGGACTCCTTGCGTTCTTATTTCGTACCTTATTAGTT
GATGCCAGTTGAACCATTTGAATGCTCTTTGCCTTATTGCATACAAATCTGCGTAAATGTTAAAGCATACCCTATGCCTT
CTTAAACACTATGTGATCAAAGTAGTTGCCATCTTGCAGATTCACCGGTTGCTGAGCCCCGTCTACAACCCAAGCATAAA
AGCCACAGTAGCGAAGGCGACCTACTCCACAAATTCAACGTAAGCAGTGCAGTTCCTGAGATCCAGCCAGTATATGAGCC
GCCGTTGCTGCGGAGCCGTGATGATGATGAAACCCTCAACAAGAGGACTTATGATTATGGAGCAGCAAGTGTGCAGCCTA
AGAGGGACATGGAAATGAGACCAAGATCTGTGCCTCCGAGGGACATGGGATCTATGCCTCCGAGGGACATGGGATCT---
---------------------GTGCCTCCGAGGGACATGGAAACAAGACCCAGATCTGTGCCCCCAAGCCAGCCTAACCA
AGCAGACGACTCGTCTTGGTCTCTGGATACTCTGAAGCAACTCGTGGATTTCACGCCGCAGGAGATCACCCAGGCCATCT
CAGCCACAGAGCTCAACCGCTGCTTAGCATCCATTCTCATCGCCTTCATTGTGGTTGTTTCTAACTGGGGGCTGGACGTT
GGTGGCACCATCACCAGAGTATTGGTTTGCACGAGGCCGCTCCTGTTCCTCATCATAACGAACGTAACCATCGTCATGTC
GTTGCTGATGGAGAACAGGGACCCCAATGCGAGGGGCAGACAGGCCGGCATCAGCCTTGGTTCTGATGGCTTAGGGCTGA
TGCTGGAGCTCGGGATGCTGCTACAGAAGGCGTCTGAAGCTATGCTGATGGACTTCAGCATTTGCGCTGTCATCATGATC
TGTTTTCTTTGATTCTGAACACCCTGGTCATGTTTTCTTGGATTCTGAAGAGAATTTAGATAGTTCGCGGAAGCGCATGT
AGAATTTCTT-TTTCTTTTGTTGCTATATCGTACTCTTATGTCTATTTATCCGATCTTGTAACACCGTCTCTGGCTCGAT
TTTGATTTACTTCTGTACCACTGTTTCGTTTGTATATACGCTTATACAGCTTGCTGGGACCGAGTTCAACCAGGTACTAT
CTTCTTTTTTCCGGGGAACCGGGTCTACTATCTTCCAAGAGATTTTATTACTTGCGTAATAG------------------
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----------------------------------------------------------------------TGTTCTGTGT
GTATTTATACGCTTAC---ACAGTTGTATTTGTTGCTGTATGGGGGGTCCATCACTAATGTGTGGATTATCAGTTTATCG
CCCAGAAAAC-TTCTAAACAGTTCTTCTGAGAATTTCTTTTTTTGCTATGGTACT-------------------------
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>chr3B_263
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-------------------------GATTATCTGCAGGGCCGCACCC--CGATCCGGCGTCCATCTGAAGTCTAAACCGC
GACAGGGAACCGGCCATA--------------------------------------------------------------
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-------------TAACTCGGGCCAGTTGAGGCGTACAGGCGCATAAATGGGCACGGGCTCGCTTGGCAGGCACGACTCG
AGCACCACTAATCA---GGCGAAAATGCGTCGTATGGCCAGTTTTAATGAGGCACAGAGATAAGTCAATGAACCATATAT
AGCTGGTGCACTGCACCCGCGGCATGTGACGGCCTTTACG----------------------------------------
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-------------------CCCCGCCAGAATCTTTTAATTCGAGATTTAT--GCGCGAGCGAACTGGGAGAAACAA-AAG
GAAGAGGTGGCGTGATATGCACACCGACGTCAGGG---------------------------------------------
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---------------CTGCACCTGTACGGGAAATGCAGAGAAGAATTGGCCACCAGTATTTTTTTAAGAATTTATGTTTT
TTTAGAACTTCGGCTTCAAGGAAACGAATTGGCCACCAATAAGAGCATCTACACCCGGGCGTCCCAAACCCGCCTCGTAT
ACCCGGGCGAGCCGCCCGGTCACTGCCGGGTTGCAAAATTTTGATCCAGACGAACGCCTCAAACGGCCCAGGCTGACCGG
CACCCCTCATATCCAGCCCAAATATGGGGCGGATATGGCGCGCCTGGGCGTGACTGGGCATGCCCGCTACATCAGACCCG
ACCCACCTGGCCCACCAGACCCCACACATATTCCTCTCCATTCGCTCGCCGGACCAAACCCTAGCCACTTCACTGCACTC
CCTTCCACCATCCAAACTCGTCTCCGACATGGCGGGCAATGGATCCGAGTTCTTCACCTTCAGATCCATCGACTCCGAGC
TCATCCCTCGCGGCCCCCGAGGAGGAGATGGTCGTCCGACTTGTGCTCCATCGCGCTCGGAAGGAGGCCCGTGCACGACA
GTGCTCGGGCTCCTTCCGTCGGGAATCCATTACGTCCGCCCAAATGGCGCATGGATCCGACGCTAGGCCAGCCGTAGCTG
CCTCGCCGAAGGCGGGGCGGTCCGTCTGGCGTCCGAACGCGGTGGCGGACACAGAACCCTCTCCTTTAGCGCGTTGAGCA
TTGGGACGCACCATGGGCCTCGTCCGACAAGAACATGGCACGTCGGGCAGGCACCGAGTCACATTCTTCGGCTCCCAGTA
TGGCGTATCAGTCCGAACGCCGCAACCGCATCGTGGTGGACGTCGACGGCTTGTCCTAGGACGGATCCGTCATCGATTTG
ACGTCCACCGGCACCTTTCGCATTTCGGGCTCCGACGAGAAAGAGTAGGGCATGAGAGATGGCGACGCCTTGAGTCTCGT
GAGCCGGCTCGTGTCCAGCCCTATTCTACCTTGCCGACGATCGGACAAAAACTCCGAGGACGCGCAGCAGGCCGCCTGAC
ATGGCGACGGCGGAGCCAGACGGCGGGGAGCGAAACTGGATGAAGCTCCGCTCGAAGATTGTTGTGTTGCATCAAATAAT
ATGTTTTTAAGTTTTTTAATTTAAGATATCCGGATGTGAAATGCATTTTTTAAAACGTGATCGGTCGCTGTCTGTGGAAG
CGTCCAGACAAGTAAATTGGCTACAGTCTACGAGAAGAGACATTCGGTGGTTTGGACGTGTGGACGATCACGTGCTCTG-
--TGCTTTACGATTCGCGCAACGAACAGTCTGGGC-TAGGCCTGTACTGGGGCCGG----------------ATGGCTAT
GGGCTAAAGTGGGCCGGTTTCAGTT---TTTTTTCCAGCCAGGAGAAGAGTATATCGAAGAATTT---------------
------GGAATTCGGAAAAGAAA--GGAGAGGCGAGGGGGTGGAGCAGTCTGGG--AGAGAAAGTAGTGGCCTGCGCGTG
CACGCA-CGCGCGACGAGGGAGGGAGGCGATGGAGGGCGCCCCGAGGGCAAACACGCGGCGCCGGCGGCTGGTCGAGAGG
GGATCAGATCGCCTGGCCTTCATCACCGGCCAGACGCGCGACCTCCCCCCCGACCCCGACCCCTACCCAGGTAACCACCG
CCGCAGGGGTCCGATTTCTAGCTTTGGGGT-ATATCCAGATCGCCTACCTGTTGCCTTGACGCCAGATTGATTGGGCTAG
ATTGTAACTGTGTTTAGGAATTGACCACGGAATTCAGTTTCGGTGGATTTTTCCCGGTTTATGCGTTGTAGGGCTATTCG
ATTAGTTGTTGGATTTAGAATCTCTGGTGCCAGGTACAAGTCATGGATTGCAGG---TTTCCTACCGCGGAATC----TT
AGGTTTCTAGATCACGCGTCATGAGAATTTCTTAATTTGGAGAGTGTTGGAAGCGGAGATTATGTTGGATGCATAGCCTT
G---TTCTTCTTCAGATTTTTTCCCTGCCTGATAGGACGCTAATTTGTGTTGGTACATGGCCAAACCATTCGTCAGGGGC
TTCTACCTGAAGTACTGATGGGTCTTTCAGGGAATAGACTTGCAAAATTCAC----------------------------
--------------------------CTTAAGCCAT-------------CTCATGAGAACCTTCTCCCCAGACCAGGAAG
TATTGTGCATCGTTGCATCAGCTCATTGAGCACGTCTCTATGACTCTTCTTAGAAGAGTTGCGATTAAGAGATTCCTCTA
TGTTGCAGCGTAATCAAATAATCATTAATCAGTTATCAAACTGCCCTTTCCTATGTTTT-GCTTGTTTTATGAGCAACTC
TTTGGGTCTTCCTGTCTTACATCTATCACAATGTCGTCTTCGACCCACTAGATTGCTTTCTGGTCCATAATTCTCCCTGT
CTGTCCCTTGTAGCCTCGCAATGAGCACAGGATTAATTGCTTACGGACTCCTTGCGTTTCA------TACCTTATTAGTT
GATGCCAGTTGAACCATTTGAATGCTCTTTGCCTTGTTGCATACAAATCTGCGTAAATGTTAAAGCATACCCTATGGCTT
CTTAAACACTATGTGATCAAAGTAGTTGCCATCTTGCAGATTCACCGGTTGCTGAGCCCCGTCTACAACCCAAGCATAAA
AGCCACAGTAGCGAAGGTGACCTACTCCACAAATTCAACGCAAGCAGTGCAGCTTCTGAGATCCAGCCAGTATATGAGCC
ACCATTGCTGCGGAGCCG---TGATGATGAAACCCTCAACAAGAGGACTTATGATTATGGAGCAGCAAGTGTGCAGCCTA
AGAGGGACATGGAAATGAGACCCAA------------------------------------------------ATCC---
---------------------GTGCCTCCGAGGGACATGGACACGAGACCCAGATCCGCGCCCCCAAGCCAGCCTAACCA
AGCAGACTACTCATCTTGGTCTCTGGAAACTCTGAAGCAACTCGTGGATTTCACGCCGCAGGAGATCACCCAAGCCATCT
CAGCCACAGAGCTCAACCGCTGCTTAGCATCCATTCTCATCGCCTTCATTGTGGTTGTTTCTAACTGGGGGCTGGACGTC
GGTGGCACCATCACCAGAGTATTGGTTTGCACGAGGCCGCTCCTGTTCCTCATCATAACGAACGTAACCATCGTCATGTC
ATTGCTGATGGAGAACAGGGACCCCAATGCGAGGGGCAGACAGGCCGGCATCAGCCTTGGTTCTGATGGCTTAGGGCTGA
TGCTGGAGCTCGGGATGCTGCTACAGAAGGCGTCTGAAGCTATGCTGATGGACTTCAGCATTTGCGCTGTCATCATGATC
TGTTTTCTTTGATTCTGAACACCCTGGTCATGTTTTCTTGGATTCTGAAGAGAATTTAGATAGTTCGCGGAAGCGCATGT
AGAATTTCTT-TTTCTTTTGTTGCTATATCGTACTCTTATGTCTATTTATCCGATCTTGTAACATCGTCTCTGGCTCGAT
TTTGATTTACTTCTGTACCACTTTTTCGTTTGTATATACGCTTATACAGTTCACTGGGACCAAGTTCATCCAGG------
-----------------------CCTACTATCTTCCAGAGATATTT--TACTTGCGTAATACTCCCACCGTTTTTATTTA
CTTGCATATTGAAATCAAACTTTGTAAAGTCTGACTAAGTTTATATAAAGAAACATTTACCATAACAAATCTATATGTTG
TGAAAATACATTCAATAATGC-----ATTTAATTGTATTGATTTTTTAATTGTATATGTTAATATTTTTGTTTATGAACT
TTGTCAAAATTTACAAAGCTTGACTTTGACGAAAGCTAATACGCGAACTGAATAAAAATGGAGGAAGTACTGTTCTGTGC
GTATTTATATGCTTATTATACAATTGTATTTGTTGCTGTATGGGGGATCCATCACTAATGTGTGGATTATCAGTTTATCG
CCCAGAAAACATTCTAAACATTTCTTCTGAGAATTTCTTTTCTTGCTATGGTACTCTGATGTCTATTTATTCGATCTTGT
AACATCCTCTGAATTTTGATTTACTTCTGTACTACTGTTTCGTGTGTATATA----------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSS----S---------------------SSSSS-------S-----S-------------
-----------------------SS-------------------------------------S----------S------
--------S----S------------------------------------------------------------------
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---------S---SS-S--------------------------------------S------------------------
-----S-S------------------------------------------------------------------------
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--------------------------S-----------------------SS-------------S-------S------
-----------------S--------------------------------------------------------------
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----------------------------------------SSSSSSS-SSSSSSSS-S-SSS-SSSSSSS---S-S--SS
S-SSS-SSS-S---SSSS-S-SSSSSSS--SSSSSS---S--SSSS----------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------S------------S
SS-----S-------S--SSSSSS-S-SSSSS-SSSSSS-S-SSS-SS-S-SSS--S-S---------------------
----------------S-------S----S-----SS------S--S-S-----S---SS-----S-S---SS-------
-----------------------SS----------S------------------SS------------------S-----
-S-SSSS---------------------------------------------------------S---------------
---------------------------------------------------------S----S-----------------
--S----------------------------S-----------S------------------S-----------------
----------------------------S---------------------------------------------------
--------------------------------------------------------------------------------
-S------------S-----S--S---------------------------------------------------S----
------------S----------S------S-------------------------------------------------
----------------------------------------------S-------------------S-------------
--------S---------SSS---S-----------SSSSSSSSSSSSS---------------------S--S------
--------------------------------------S-----------------------------------------
-----------------------S--------------------------------------------------------
----------------------------------S--------------------------------------------S
-----------------------------------S--S-----------------------------------------
----------------------------------------------------S-----------S---------------
-----S---S------------------------------------------S--------------------------S
-----------------------------------------------S--------------------------------
--------------------------------------------------------------------S-----------
-----------------------------------------------------------------------------SSS
SSSSSSSSSSSSSSSSSSSSS----------------------S------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------S----S------------------
-------------S-------S----------S-----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------S--------------
----------S----------------------------------------S------------------------S---
------------S-------------------------------------------------------------SSS---
--------------------S------S--------------------------------------S--S----------
--SSSSSSS-S--SSSSS-S---------------------------------------------------------S--
-----S--------------SSSSSS-------S------------SSSS-S-----S-----------S-----S----
-----S-----------SS-----------S---S----------S---S-----S--------S----S----------
----------S---S-S--SSS--SS----S----S--------------------------------------------
S--------------------------------S----------------S--------------------S--------
----S----S------------------------S----------S--S---SSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_106
--------------------------------------------------------------------------------
------TCTCAAGCTACAACGCTGCA------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------
>reverse_4204
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------ACTACCTGTTGCGTTCACGT-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------
>forward_3865
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----AAGGTGGGCCGATTTAAGGG-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------
>reverse_5445
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----CGAGGGACATGGGATCTGTG--------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------
>forward_4223
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------ACTACCTGTTGCGTTCACGT-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------
>reverse_5446
--------------------------------------------------------------------------------
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-----GAGGGACATGGGATCTGTGC-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------
>forward_5443
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------TGAGACCCAGATCTGTG
CCT-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------
>reverse_6703
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------GGACCTTTTCGCGCCTTT
TT------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------
