>input_sequence_43016
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-------------------------------------------------------ATGGCGTCGCCGGCCGCGGCCGCCT
CCAGCCACC---------TCCACCTCCTCCTCATCGCGCTTCTCTTCCTCCCGTTCGCCGCGGCCGCCGCGCCGCACAGG
CACCGCGTCCCGTCCCGCCACCTCGCCTCGCTCAACGCGTCGGCGCCACCAACCACCTTCTTCGAGGTGGACCGCCCGAT
CCGCCCGCCGCTCGGCAGCGTCGGGCCCTGCTCCGCGCTGCTCCTGTCCCACTCCTTCGGCGAGACCTACGGCCGCCCCC
CGGTCACCGCCGCCTACGCGCCGCCCGAGTGCCTCGCCGCCGCGCGCGCCAGGGGCGCGTCGCTCG---CACTCGCGGTG
CTCGAGTGGACCGCCGACTGCCGCGGCCGCCAGTTCGACCGCATCTTCGGCGTCTGGCTCTCGGGCGCCGAGATCCTCCG
CAGCTGCACCGCCGAGCCGCGCGCCACCGGCATTGTCTGGTCCGTCTCCCGCGACGTCACCAGGTACGCGGCCCTCCTCG
CGGAGCCCGGCGAGG------TCGCGGTGTACCTTGGCAATCTCGTCGACAAGACCTACACGGGCGTCTACCACGTCAAC
CTCACGCTCCACCTCTACTTCCGCCCTGCGCCGCCGCCGCTC------A---CGCAG---CACGCCGATCTGATTGTGCC
CATCTCGAGAAGCTTGCCTCTGAACGACGGACCGTGGTTCGCCGTCCAGAATGCCACCGACGTGCAGTCCAAGAGCCTCT
CCATTCCATCGAACACCTACCGGGCGGTCCTTGAGGTGTTCGTTTCGTTCCACTCCAGCGATGAGTTCTGGTACACGAAC
CCTCCCAACGAGTACATTGAGGCCAACAATTTGTCCAGCGTTCCTGGCAATGGTGCTTTTCGGGAGGTTATTGTTAAAGT
CGATGACCATGTGGTCGGTGCTGTTTGGCCGTTCACTGTCATCTACACCGGCGGCGTCAACCCGCTTCTCTGGCGGCCAA
TCACCGGCATTGGCTCATTCAATCTACCTACCTATGACATTGATATCACGCCATTCTTGGGCAAGCTCCTGGACGGCAAG
GAGCACGATTTTGGGTTTGCTGTCACCAATGCATTGGATGTGTGGTACATTGATGCCAATTTACATCTGTGGCTGGATCA
CAAGAGCAAGAAAACAGTCGGGAGCTTGATCGGCTATGATGCACCCGCATTGGCACTGAATTTGGACTCTGGGTTCAGTG
GGCTGGATGGTAAGTTCGTCACGGGCGCAAGCCGGCATGTCTCCGCGACCGGGTCGGTGAAATCATCATACGGGGAGGTG
ACCACAACTTTCTACCAGAGATTCAGCTATGTTAACAGCAATGTGTATACCAACAATGGCACTGTCCAAGTGGTGAACCA
AACGATTGATGCAAAGTCTGGTGTTTTTGTCAAGGATACTTCTGCTGTTCTTCT---CTCGGAGGAAGTTCACAAGGTGT
TTCCGCTGTATGTCTACACTGGAACATCAGACCAGGTGGGCGACGAGTACTCACTGATTTCACTTGTCAAATTGGGCATC
AACGAGAAGAGTGTCTTAGGTGGGAAGTTGGGGTTCTCGTACCGCTCTCTGCGGAATGCACAGTCAGCACGCGGCACTAT
GAAGGTGAAGAAGAATTTGGTGGTTAGTGGACTGGGGAAGACACATCAGGTGTACAAATATGTGGGTACTGATGGATGCT
ACTTCAGGGATGTGAGCAGTAAGAATTACACTATAATTTCTGACAACTCTGGTGATTCTTGCTCAAAGGGATCGCCATCT
AGTGGTGTCAAATTCTCCTCCAATAAAAATCAACCAGCTAGGAAAAGGTTGCTGAAACTGTAA-----------------
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>chr3D_1_TraesCS3D01G150900
GTTTTAATCCTCGCAGGTGTGCACTCAGATGGATGGAGTGCACTATTAATGGTCATGCACACGTTGTAACTTTGTCTAAA
GAATTTCGGTGAAAAGCTTTTCTATGATGGAGTTGCCACAATAGTTTAGACTACCCATAGTGGGAGTAACATAGGTAGTA
ACATTACATATATCTGGATAAAATAGATGATGTGGCAAGCAATAAATGAAGAAAAAGAGGCATGTGGTAACATAGATAGT
TACTACTAGTATGAGTAACATCACACATATCAAGGCAAGATGAGTCTATAGCCTAACAAATGAAGTGTTGCATGTTACCA
CACATATGTTACTCCCCACTATAGAGGTAGTAACATAGAGTAGTAACACATGTTACTACTCTATGTACTACTCTATGTTA
CTACCCATTATGGCTACCTTATGTCTCTTCGTGATTCTTATATTACTCATGTTGATCGTAGCCAAAATAAAATTAGTGAT
AGCATAGCCAAATTTACTCGTGTAGGAGGCAGAACCATGACTTGAATTGGTTCGGGTCCTTAGGATGCTATGGAGCTAGC
TACGATTGATTGTATGAACTGCCTCAGTTGAGTAATACATTATTTCACTCGGAAAAAAAAGTCTTAGAAGTGCACTGCAA
TTACTTGCGT---TTGTCGCAGATCCGGATCCGGACGGAGTAGGCTCGTCATCCGCACGTG-------CACACACGGGAG
CATCCAGAATCCAGATCCAGATGCAG---CAGGCTCACGTTTCCACGCTGGACACGCGCACGCAACACATAAT-ATTGTA
ACTTACACGACTCATCAAACATAAAAATCCACACGAAACCCCTTGGTTAGGCCCGCCTCCGACCCAAATCTCCTAGATTA
CGGCGTAATAACGACGACAACAACCTCTCTTATTATACGCCATCTTTCACCTCGTTTAAACCCCCAGGTTTACTTGCCCG
GCTCCACTGCCACCG-CCCCGCATCTCGTGCTCCCCGCCCTCCAGCCCAGCAGCCATGGCGTCGCCGGCCGCGGCCGCCT
CCAGCCACC---------TCCACCTCCTCCTCATCGCGCTTCTCTTCCTCCCGTTCGCCGCGGCCGCCGCGCCGCACAGG
CACCGCGTCCCGTCCCGCCACCTCGCCTCGCTCAACGCGTCGGCGCCACCAACCACCTTCTTCGAGGTGGACCGCCCGAT
CCGCCCGCCGCTCGGCAGCGTCGGGCCCTGCTCCGCGCTGCTCCTGTCCCACTCCTTCGGCGAGACCTACGGCCGCCCCC
CGGTCACCGCCGCCTACGCGCCGCCCGAGTGCCTCGCCGCCGCGCGCGCCAGGGGCGCGTCGCTCG---CACTCGCGGTG
CTCGAGTGGACCGCCGACTGCCGCGGCCGCCAGTTCGACCGCATCTTCGGCGTCTGGCTCTCGGGCGCCGAGATCCTCCG
CAGCTGCACCGCCGAGCCGCGCGCCACCGGCATTGTCTGGTCCGTCTCCCGCGACGTCACCAGGTACGCGGCCCTCCTCG
CGGAGCCCGGCGAGG------TCGCGGTGTACCTTGGCAATCTCGTCGACAAGACCTACACGGGCGTCTACCACGTCAAC
CTCACGCTCCACCTCTACTTCCGCCCTGCGCCGCCGCCGCTC------A---CGCAG---CACGCCGATCTGATTGTGCC
CATCTCGAGAAGCTTGCCTCTGAACGACGGACCGTGGTTCGCCGTCCAGAATGCCACCGACGTGCAGTCCAAGAGCCTCT
CCATTCCATCGAACACCTACCGGGCGGTCCTTGAGGTGTTCGTTTCGTTCCACTCCAGCGATGAGTTCTGGTACACGAAC
CCTCCCAACGAGTACATTGAGGCCAACAATTTGTCCAGCGTTCCTGGCAATGGTGCTTTTCGGGAGGTTATTGTTAAAGT
CGATGACCATGTGGTCGGTGCTGTTTGGCCGTTCACTGTCATCTACACCGGCGGCGTCAACCCGCTTCTCTGGCGGCCAA
TCACCGGCATTGGCTCATTCAATCTACCTACCTATGACATTGATATCACGCCATTCTTGGGCAAGCTCCTGGACGGCAAG
GAGCACGATTTTGGGTTTGCTGTCACCAATGCATTGGATGTGTGGTACATTGATGCCAATTTACATCTGTGGCTGGATCA
CAAGAGCAAGAAAACAGTCGGGAGCTTGATCGGCTATGATGCACCCGCATTGGCACTGAATTTGGACTCTGGGTTCAGTG
GGCTGGATGGTAAGTTCGTCACGGGCGCAAGCCGGCATGTCTCCGCGACCGGGTCGGTGAAATCATCATACGGGGAGGTG
ACCACAACTTTCTACCAGAGATTCAGCTATGTTAACAGCAATGTGTATACCAACAATGGCACTGTCCAAGTGGTGAACCA
AACGATTGATGCAAAGTCTGGTGTTTTTGTCAAGGATACTTCTGCTGTTCTTCT---CTCGGAGGAAGTTCACAAGGTGT
TTCCGCTGTATGTCTACACTGGAACATCAGACCAGGTGGGCGACGAGTACTCACTGATTTCACTTGTCAAATTGGGCATC
AACGAGAAGAGTGTCTTAGGTGGGAAGTTGGGGTTCTCGTACCGCTCTCTGCGGAATGCACAGTCAGCACGCGGCACTAT
GAAGGTGAAGAAGAATTTGGTGGTTAGTGGACTGGGGAAGACACATCAGGTGTACAAATATGTGGGTACTGATGGATGCT
ACTTCAGGGATGTGAGCAGTAAGAATTACACTATAATTTCTGACAACTCTGGTGATTCTTGCTCAAAGGGATCGCCATCT
AGTGGTGTCAAATTCTCCTCCAATAAAAATCAACCAGCTAGGAAAAGGTTGCTGAAACTGTAACTTGGAATTAAGGTGGG
CAACTGAATTATCTATCGTTCAGTTTACTTACTTTGTCTCTTCACTCGAGATTTGTTAGGTTAGATTATCGTTCATGTAC
TAGGTAAGAATATATGTTTGGAATTATCTCTACAAGCATCCCACTTTGTAAGTCTTCTAGTAGAAGACAACTTTCTCTTC
TGGAATGTATATAAATCAATAAAAGTGGCGCTTGGGTTTCAAAATATTCCAAGTAGGAG---------------------
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----------------------------------------------------TAGACGCAATCAAAT-------------
------------------ATTTCTCAACTTGTTAGACGGAGAAGTATAAAGAGACTGGTTTCCTTTTTCCCTGCTC----
-----------------------AAGATATGCAATGGGGTTGCTGGCACATGATTGATGTTTT---TTTTACGGATGAGT
TAAAGACAATAT-GCCAACTCCGTCTTTTGGGTTCTCTACTTCTTTGTCTGAATAATGTGCTTCCTGTTG----AAAAAA
TAGCGCAATTTAAATGGCCAGCTTTTTTGCTTTTGACAGAAAATTGTTCCACAAAAACAGGACAGAATCCGAAAATTTTC
ATTAAGAA------------------------------------------------------------------------
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--------------------------------------------------------------------------AAATTG
AAACCATAAATTTGTATTGTCGA-GTGTCTAAATAACCACCTGCACT---------------------TAAAATTGATTT
GTTTACTCAGCACTTCTCTAACCACCTAGCATCGTAGTTGGCTCTAATAGAGCATGATTGGTTTGGTGCCATAAATTGCC
ATGTCATAATTTGGTAAATGTTAAATATTGGCT-AGTGATTGGTTGGTTATTATTTTCCATTTTGGCCAAGCTCACAAAA
GTTGCCAAGATAAGTTACCGAATGAGTTAAATACATCATGAGTGCCTAAACTTGTTCGTTGCGGTCAATTTAGTGCCTAA
ACTTGTAAAATACATAAAAGTGATGCTACAACTTGTCGCAAGGTGCATATACGGTGCCTCCGTCTGTATGTCCGTATGCC
ACCGTATTTGCTCTCGCTGTGGTGTGACAGCTGGCGGCTGGCCCACAGATCAGTGGGTGAGCGTTGCCTGCGCTGGGTGA
AATGCGTACGA
>chr3A_635
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--------------------------------------------------------------------------CTGCAA
TTACTTGCAAAAATTGCCGCAAATCCGGATCCGGACGCAGTAGGCTCATCATCACCAGCACGTGCACACACACAGCGGAG
CATCCAGAATCCAGACCCAGATGAAGTACTAGGTTCACGTTTCCACGCTGGACACGCGCACGCAACACATAATTATTGTA
ACTTACGCGACTCATCAAACATAAAAATCCACACCAAACCCCTTGGCG-GGCCCGCCTCGTACCCAAATCGCCTAGATTA
CGGCGTAACA---ACGACAACAACCTCTTCTATTATACGCGACCTTTCACCTCGATTAAACCCCCAGGTTTACTTGTCCG
GCTCCACTCCCACCGCCCCCGCATCTCGTGCTCCCCGCTCTCCAGCC---CAGCCATGGCGTCGCCGGCCGCGGCCGCCT
CCGGCCACCGCCGCCGCCTCCTCCTCCTCCTCATCGCGCTTCTCCTCCTCCCGTTCGCCGCGGCCGCCGCGCCGCACAGG
CACCGCGTCCCGTCCCGCCACCTCGCCTCGCTCAACGCGTCGGCGCCGCCGACCACCTTCTTCGAGGTGGACCGCCCGAT
CCGCCCGCCGCTCGGCAGCGCCGGGCCCTGCTCCGCGCTGCTCCTCTCCCACTCCTTCGGCGAGACCTACGGCAGGCCCC
CGGTCACCGCCGCCTACGCGCCGCCCGAGTGCCTCGCCGCCGCGCGCGCCCGGGGCGCCTCGCTCG---CGCTCGCCGTG
CTCGAGTGGGCCGCCGACTGCCGCGGCCGCCAGTTCGACCGCATCTTCGGCGTCTGGCTCTCCGGCGCCGAGCTCCTCCG
CAGCTGCACCGCCGAGCCGCGCGCCACCGGCATCGTCTGGTCCGTCTCCCGCGACGTCACCAGGTACGCGGCCCTTCTCA
ATGAGCCCGGCGAGG------TCGCGGTGTACCTTGGCAACCTCGTCGACAAGACCTACACGGGCGTCTACCACGTCAAC
CTCACGCTCCACCTCTACTTCCACCCTGCGCCGCCGCCGCTC------A---CGCAG---CACGCCGATCTGATCGTGCC
CATCTCGAGAAGCTTGCCTCTGAACGACGGGCAGTGGTTCGCCGTCCAGAACGCCACCGACGTGCAGTCCAAGAGCCTCT
CCATTCCGTCGAACACCTACCGGGCGGTCCTTGAGGTATCCGTTTCCTTCCACTCCAGCGATGAGTTCTGGTACACGAAC
CCTCCCAATGAGTACATTCAGGCCAACAATTTGTCCAGCGTTTCTGGCAATGGTGCGTTTCGGGAGGTTATTGTTAAAGT
AGATGACCATATCGTCGGTGCTGTTTGGCCGTTCACTGTCATCTACACCGGCGGCATCAACCCACTTCTCTGGCGGCCAA
TCACCGGCATTGGCTCATTCAATCTGCCTACCTATGACATTGATATCACGCCATTCTTGGGCAAGCTCCTGGACGGCAAG
GAGCATAATTTTGGGTTTGCTGTCACCAATGCATTGGATGTGTGGTACATCGATGCCAATTTACATCTGTGGCTGGATCA
CAAGAGCAAGAAAACAGTCGGGAGCTTGATCAGCTATGATGCACCGGCACTGGCACTGAATTTGGACTATGGGTTCAGTG
GGCTGGATGGTAAGTTCGTCACGGGCGCAAGCCGGCATGTCTCCGCAACCGGGTCGGTGAAATCATCATACGGGGAGGTG
ACCACAACTTTCTACCAGAGATTTAGCTATGTTAACAGCAATGTATATAGGAGCAATGGCACTGTGCAAGTGGTGAACCA
AACGATTGATGCAAAGTCTGGTGTTTTTGTCAAGGATACTTCTGCTGTTCTTCT---CTCAGAGGAGGTTCACAAGGTGT
TTCCGCTGTATGTCTACACTGGAACATCAGACCAGGTGGGTGATGAGTACTCATTGATTTCGCTTGTCAAATTGGGCATC
AACGAGAAGAGTGTTTCGGGTGGGAAGCTAGGGTTCTCGTACCGCTCTTTGCGGAATGCACAGTCAGCACGCGGCACAAT
GAAGGTGAAGAAGAATTTGGTGGTTAGTGGTTTGGGGCAGACACATCAGGTGTACAAATATATGGGTACTGATGGATGCT
ACTTCAGGGATGTGAGCAGCAAGAATTACACTATAATTTCTGACAACTCTGGTGATTCTTGCTCAAAGGGATCGCCGTCT
AGTGGTGTCAAATTTTCCTCCAATAAAAATCAACCAGCTAGGAAAAGGTTGCTGAAACTTTAACTGGG----AAGGTGTG
CAACTGAATTATCTATCGTTCAGTTTACTT----TGTCTCTCCACTCGAGA-TTGTTAGGTTAGATTATCGTTCATGTAC
TAGGTAAGAAATT-TGTTTGAAATTATCTCTGCAAGCATCCCACTTTGTAAGTCTTCTAGTACAAGACAACTTTCTCTTC
TGGAATGTATATAAATCAATAAAAGTGGCGCTTGGGTTTCAAAATATTCCAACTACTCCCTCTGTTCCGAAATACATACA
AGTCTTTTAGAGATTCCAATATAGACTACATACGGGGCAAAAATGAATGAATCTACACTCTGAAATATGACTATA-----
---------------------------CATCCATATGTAGTTCGCATTGAAATAGATGCAATCAAAT-------------
------------------ATTTCTGAACTTATCAACCGGAGAAGTATAAAGAGACTGGTTTCCTTTTTCCCTGCTCGTAC
CATGAGCATTCAGCATCCCAGTCAAGATTTGCAATAGGGTTGATGGCACAGGAATGAGATTTTTCCTTTTTCGGATGAGC
TAAAGACAATATTGCCAACTCGGTCTTTTGGGTTCTCTACTTCTCTGTCTAAATAATGTAGCTTGCTGTTG--AAAAAAA
ATGCGCAATTTAAATGGCCAGTTTTTTTGCTTTTGACAGAAAATTGTTCCACAAAAACAGGACAGAATCCGAAAATTTTT
ATGAAGAAAAATTGAACCCATAAATTTGTATTGTTGAGGTTTCTAAATAATCACTTGCACTCCACAGATATGCACTTGTG
CTTAAAATTGATTTGTTTTCTCAGCACTTCTCTAACCACCTAGCATCGTAGTTGGCTATAATAGAGCATGATTGGTTTGA
TGCCAAAAATTGCCATGTCAAAATTTGGCAAATGTTAAATATTAGCTAGTGATTGGTTGGTTATCGTTTTCCATTTTGGC
CAAGCTCACAAAAGTTGCCAAGATAAGTTTCTGAATCTTGGTAACTTTTGATTTTAATTACCAAATGTTGCCTTGTCAAA
TGTTGCATTAAATCAACACTACTAGAAAAAGGCCTACTAATGGCGCATCAGTTTTGCCTACTAATGGCGCACTACTATTA
TTCTTTACTAATGGCGCCACTAGTATTTTTTACTAATGGCGCACCACTGGTGCCCATTAGTATACCAGATACTAATGGCG
CACCAGTAGTAATATTTTTTTTCAATTTTTTTTAAAAAAATAATTTTTTTATTTTTTTCTTAATCTTGGGTCACTATGGC
TTAATCTCGAGTCAATATGCTTAATCTCAGGTCAAATCACACTCTATGGTCAAACTTTCCGAAAGGTCACCCATAAATTG
AACCCATAAATTTGTATTGTCGAGGTGTCTAAATAATCACTTGCACTCCACAGATATGCACTCGTGCTTAAAATTGATTT
GTTTTCTCAGCACTTCTCTAACCACCTAGCATCGTAG----CTATAATAGAGCATGATTGGTTTGATGCCAAAAATTGCC
ATGTCAAAATTTGGCAAATGTTAAATATTAGCTA-GTGATTGATTGGTTACCGTTTTCCATTTTGGCCAAGCTCACAAAA
GTTGCCAAGATAAGTT----------------------------------------------------------------
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>chr3B_660
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----------------------ATCCGAATCCGGCTGGGCTGGGC---TCATCACCAGCACGTGCACACACG--GCGGAG
CATCCAGAATCCAGATCCAGATGTCG---TAGGTTCACGTCTCCACGCTGGACACGCGCACGCAACACATAAT-ATTGTA
ACTTACACGACTCATCAAACATAAAAATCCACACCAAACCCCTTGGTTAGGTCCGCCTCCGACCCAAACCTCCAAGATTA
CGGCGTAACA---ACGACAACAACCTCTCTTATTATACGCTATCTTTCACCTCGGTTAAACCCCCAGGTTTACTTCCCCG
GCTCCACTCCCGCCG-CCCCGCATCTCGTGCTCCCCGCTCTCCAGCC---CAGCCATGGCGTCGCCGGCCGCGGCCGCCT
CCAGCCACGGCCACCA---CCTCCTCCTCCTCATCGCGCTTCTCTTACTCCCGCTTGCCGCGGCCGCCGCGCCGCACCGG
CACCGCATCCCGTCCCGCCACCTCGCCTCGCTCAACGCGTCGGCGCCACCAACCACCTTCTTCGAGGTGGACCGCCCGAT
CCGCCCGCCGCTGGGCAGTATAGGGCCCTGCTCCGCGCTGCTCCTGTCCCACTCCTTCGCCGAGACCTACGGCAGGCCCC
CGGTCACCGCCGCCTACACGCCGCCCGAGTGCCTCGCCGCCGCGCGCGCCCGGGGCGCGTCGCTCG---CGCTCGCGGTG
CTCGAGTGGAGCGCCGACTGCCGCGGCCGCCAGTTCGACCGCATCTTCGGCGTCTGGCTCTCGGGCGCCGAGATCCTCCG
CAGCTGCACCGCCGAGCCGCGCGCCACCGGCATTGTCTGGTCCGTCTCCCGCGACGTCACCAGGTACGCATCACTCCTCG
CGGAGCCCGGCGAGG------TCGCGGTGTACCTTGGCAATCTCGTCGACAAGACCTACACGGGCGTCTACCACGTCAAC
CTCACGCTCCACCTCTACTTCCACCCTGCGCCGCCGCCTCTC------A---CGCAG---CACGCCGATCTGATTGTACC
CATCTCGAGAAGCTTGCCTCTGAACGACGGGCAGTGGTTCGCCGTCCAGAATGCCACCGACGTGCAGTCCAAGAGCCTCT
CCATTCCGTCGAACACCTACAGGGCGGTCCTTGAGGTGTTCGTTTCGTTCCACTCCAGCGATGAATTCTGGTACACCAAC
CCACCCAATGAGTACATTGAGGCC--------------------------------------------------------
-----------------GTGCTTTTTGGCCGTTCACTGTCATCTACACCGGCGGTGTCAACCCGCTTCTCTGGAGGCCAA
TCACCGGCATTGGCTCGTTCAATCTACCTACCTACGACATTGATATCACGCCATTCTTGGGCAAGCTCCTGGACGGCAAG
GATCACAATTTTGGGTTTGCTGTCACCAATGCATTGGATGTGTGGTACATTGATGCCAATTTACATCTGTGGTTGGATCA
CAAGAGCAAGAAAACAGTCGGGAGCTTGATCAGCTATGATGCACCCGCATTGGCACTGAATTTGGACTCTGGGTTCAGTG
GGCTGGATGGTAAGTTCCTCACGGGCGCAAGCCGGCATGTCTCCGCAACCGGGTCGGTGAAATCATCATACGGGGAGGTG
ACCACAACTTTCTACCAGAGATTCAACTATGTTAACAGCAATGTGTATACCAGCAATGGCACTGTCCAAGTGGTGAACCA
AACGATTGATGCAAAGTCTGGTGTTTTTGTCAAGGATGCTTCTGCTGTTCTTCT---CTCGGAGGAAGTTCACAAGGTGT
TTCCGCTGTATGTCTACACTGGAACATCAGACCAGGTGGGCGACGAGTACTCACTGATTTCACTTGTCAAATTGGGCATC
AGCGAGAAGAGTGTCTTAGGTGGGAAGTTGGGGTTCTCGTACCGCTCTCTGCGGAATGCACAGTCAGCACGAGGCACTAT
GAAGGTCAAGAAGAATTTGGTGGTTAGTGGACTGGGAAAGACACATCAGGTGTACAAATATGTGGGTACTGATGGATGCT
ACTTCAGGGATGTGAGCAGCAAGAATTACACTATAATTTCTGACAACTCTGGTGGTTCTTGCTCAAAGGGATCGCCGTCT
AGTGGTGTCAAATTCTCCTCCAATAAAAATCAACCAGCTAGGAAAAGGTTGCTGAAACTGTAACTTGGAATTAAGGTGGG
TAACTGAATTATCTATCGTTCAGTTTACTTACTTTGTCTCTTCACTCGAGATTTGTTAGGTTAGATTATCGTTCATGTAC
TAGGTAAGAAATATGC-TTGGAATTATCTCTACATGCATCCCACATTGTAAGTCTTCTAGTAGAAGACAACTTTCTCTTC
TGGAATGTATATAAATCAATAAAAATGGCGCTTGGGTTTCAAAATATTCCAAGTACTCCCTGTGTTCCTAA----ATATA
AGTATTTTAGAGATTCCAATATACACTACATACGGAGC-AAAATGAATGAATCTACACTCTAAAATATGACTATATACAT
CCGTATGTTTTTTTTTGGAGATGTATACATCTGTATGTAGTTTGCATTGAAATAGATGCAATCAAATATTTCTGAACTTA
TCACTGCAAAAAAAAAATATTTCTGAACTTATTAACCGGAGAGGTATAAAGAGACTGGTTTCCTTTTTCTCTGATCATAC
CATGAGCATTCAGCATCCAACTCAAGATTTGCAATAGGGTTGATTGCACAGGATTGA---TTTTTTTTTTCCGGATGAGC
TAAAGACAATAT-GCCAACTCGGTC-TTTGGGTTCTCTACTTCTTTGTCTGAATAATGCAGCTTGCTGTTGAAAAAAAAA
TTGCGCAATTTAAATGGCCAGCGG-TTTGCTTTTGACAGAAAATTGTCCCACAAAAACAGGATAGAATCCGAAAATCTTC
ATTAAGAA------------------------------------------------------------------------
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--------------------------------------------------------------------------AAATTG
AACCCATAAATTTGTATTGCCGAGGTGTCTAAATAATCACTTGCACTCCACAGATATGCACTCGTGCTTAAAATCATTTT
GTTTACTTAGCACTTCTCTAACCACCTAGCATCGTAGTTGGCTCTAATAGAGCATGATTGGTTTGATGCCAAAAATTGTC
ATGTCCAAATTTGGCAAATGTTTAATATTGGCTAAGTGATTGGTTGGTTAACATTTTCCATTTCGGCGAAGCTCACAAAA
GTTGCCAATATAAGTTGCCGAAT---------------------------------------------------------
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>chr3D_1023
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-----------------------------------------------------------------------------CCA
CCAGCCCCT---------GCCTGATCTTCCTCCTGGCGCTCCTT---CTCCCCCTCGCCGCGGTCGCCGTGCCGCGCAGA
CACCGCTTTCCGTCGCTCCAGCTCGCCCCGGTCAACGCCTCGGAGCCACCCACCACTTTCTTCGAGGTGGACCGCCCGAT
CCAGCCGCCGCGCGGCAGCGTCGGGCCCTGCTCCGCTCTGCTCCTCTCCGACTCCTTCGGCTACACCTACGGCCGTCCTC
CGGCCACCGCCGCCTACGTGCCGCCCGAGTGCCTCGCCGCCGCGCGCGCCCGGGGCGGGTCGCTCG---CGCTCGCGGTG
CTCGAGTGGAGCGCCGACTGCCGCGGCCGCCAGTTCGACCGCATCTTCGGCGTCTGGCTCTCCGGCGCCGAGCTCCTCCG
CAGCTGCACCGCCGAGCCGCGCCCCGACGGCATCCTCTGGTCGGTCTCCCGCGACGTCACGAGGTACGCCGCCCTTCTCT
CCGAGCCTGGCGAGG------TCGCGGTGTACCTTGGCAACATCGTCGACAGCACGTACACCGGCGTCTACCACGCCAAC
CTCACCCTCCATCTTTACTTCCACTCCACAACGCCGTCACCGCCGCCGCT---GCCG---CACGCCGATTTGATCCTGCC
CATCTCGAGGAGCCTACCTCTGAACGACGGGCAGTGGTTCGCCATCCAGAATTCCGCCGATGTGCAGTCGAGGAAGCTCG
CCATTCCGTCGAACACCTACAGGGCGGTCCTTGAGGTGTTCGTTTCGTTCCACTCCAGTGATGAGTTCTGGTACACCAAC
CCTCCCAACGAGTACATTGAGGCCAACAATTTGTCCAGCGTCCCTGGCAATGGTGCGTTTCGGGAGGTTATTGTTAAAGT
CGATGACAATGTGGTCGGTGCTGTTTGGCCGTTCACTGTTATCTACACCGGCGGTGTCAACCCGCTTCTCTGGCGGCCAA
TCACCGGCATTGGCTCATTCAACCTACCTACCTATGACATTGATATCACGCCTTTCTTGGGCAAGCTCATGGATGGCAAG
GAGCACAATTTTGGGTTTGCTGTGACCAATGCATTGGATATGTGGTACATTGATGCCAATTTACATCTGTGGTTGGATCA
CAAGAGCAAGAAGACAGTTGGGAGCTTGATCAGCTATGATGCAGCGTCGTCGGCA---AATGTGGACTCGCAGTTCAGCG
GGCTGGACGGGCGGTTCGTGACGAGCGCAAGCCGGCATGTCTCCGCCACCGGGTGGGTGGAATCGTCGCACGGAAAGGTC
ATGACAACTTTCTACCAGAGATTCAACTACAAAAACAGCAATGTGTATAGCAAGAACGGCAGTGAGCAAGTGGTGAACCA
AACGATCGATGCCAAGTCAGGTGTTTCCACCACAAACGGCGCCGTG---CTGCT---CTCGGAAGAAGTTCACCAGGTCT
TCCCACTCTATCTTTTCTCTGGGACCTCAGATGAAGTGGGTGATGAGTACTCGCTGGTTTCAGCTATCAAATTGAGCATC
AATGAGAAGAGGGGCTCTGGTGCGGAGCAAGGCTTCTCCTACAGCTCTCTGCGGAATGCGCAGTCGGCACGCGGTAGTAT
GAGGGTGAAGGGGAATTTGGTGACTTCTGGGTCTGGTGAGAACCATCAGGTGTATAAATATGTGGGTACCGATGGATGCT
ACTCCAGAGATGTGAGCAGCAAGAACTACACTATCGTTTTCGACCACTCTGATGACTCGTGCTTAAAGGGATC-------
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>chr3A_1040
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-----------------------CTCCTCCTCCTGGCGCTCCTC---CTCCCCCTCGCCGCGGTCGCCGTGCCGCGCGGA
CACCGCTTTCCGTCGCTCCAGCTCTCGCCGGTCAACGCCTCGGAGCCACCCACCGCCTTCTTCGAGGTGGACCGCCCGAT
CCAGCCTCCGCGCGGCAGCGTCGGGCCCTGCTCCGCGCTGCTCCTCTCCGGCTCCTTCGGCTACACCTACGGCCGCCCTC
CGGCCACCGCCGCCTACGCGCCGCCCGAGTGCCTCGCCGCCGCGCGCGCCGGGGGCGGGTCGCTCG---CGCTCGCGGTG
CTCGAGTGGAGCGCCGACTGCCGCGGCCGCCAGTTCGACCGCATCTTGGGCGTCTGGCTCTCCGGCGCCGAGCTCCTGCG
CAGCTGCACCGCCGAGCCGCGCCCCAACGGCATCCTCTGGTCGGTCTCCCGCGACGTCACCAGGTACGCCGCCCTCCTCT
CCGAGCCTGGCGAGA------TCGCGGTGTACCTTGGCAACATCGTCGACAGCACGTACACCGGCGTCTACCACGCCAAC
CTCACCCTCCATCTTCACTTCCACTCCACAACTCCGTCACCGCCGCCAA---CGCCG---CACGCCGATTTGATCCTGCC
CATCTCGAGAAGCCTGCCTCTGAACGACGGGCAGTGGTTCGCCATCCAGAATTCGGCCGATGTGCAGTCAAAGAAGCTCG
CCATTCCGTCGAACACCTACAGGGCGGTCCTTGAGGTGTTCGTTTCGTTCCACTCCAGTGACGAGTTCTGGTACACGAAC
CCTCCCAACGAGTACATTGAGGCCAACAATTTGTCCAGCATTCCTGGCAATGGTGCGTTTCGGGAGGTTATTGTTAGAGT
CGACGAACACGTCGTCGGTGCTGTTTGGCCGTTCACTGTCATCTACACCGGTGGTGTCAACCCGCTTCTCTGGCGGCCAA
TCACCAGCATTGGCTCATTCAACCTACCTACCTATGACATTGATATCACGCCATTCTTGGGCAAGCTCATGGACGGCAAG
GAGCACAATTTTGGGTTTGCTGTGACCAATGCATTGGATATGTGGTACATTGATGCCAATCTGCATCTGTGGTTGGATCA
CAAGAGCAAGAAGACAGTCGGGAGCTTGATCAGCTATGATGCAGCTTCGTCGGCA---AATGTGGACTCACAGTTCAGCG
GGCTGGACGGGCGGTTCGTGACGAGCGCAAGCCGGCATGTCTCCGCCACCGGGTGGGTGGAATCGTCGCACGGAAAGGTC
ATGACAACTTTCTACCAGAGATTCAGCTACAAAAACAGCAATGTGTATAGCAAGAGCGGCAGTGAGCAAGTGGTGAACCA
AACGATCGACGCCAATTCAGGTGTTTCCGCCACGAACGGCGCCATG---CTGCTGCTCTCAGAAGAAGTTCACCAGGTCT
TCCCACTCTATCTTTTCTCTGGGACCTCGGACGAAGTGGGTGATGAGTACTCGCTGGTTTCGGTTGTCAAGCTGGGCATC
AATGAGAAGAGGGCCTCTGGTGGGGAGCAAGGCTTCTCATACAGCTCTCTGCAGAATGAGCAGTCGGCACGCGGTAGTAT
GAGGGTGAAGGGGAATTTGGTGACTTCTGGGTCCGGTGAGAACCACCAGGTGTATAAATATGTGGGTACCGATGGATGCT
ACTTCAGAGATGTCAACAGCAAGAACTACACTGTCGTTTTCGACCACTCTGGTGACTCGTGCTTAAAGGGATC-------
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>chr3B_1041
--------------------------------------------------------------------------------
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------------------------TCTTCCTCCTGGCGCTCCTC---CTCCCCCTCGCCGCGGTCGCCGTGCCGCGCAGA
CACCGCTTTCCGTCGCTCCAGCTCGCCCCGGTCAACGCCTCGGAGCCACCCACCACCTTCTTCGAGGTGGACCGCCCGAT
CCAGCCGCCGCGCGGCAGCGTCGGGCCCTGCTCCGCGCTGCTCCTCTCCGACTCCTTCGGCTACACCTACGGCAGTCCTC
CGGCCACCGCCGCCTACGTGCCGCCCGGGTGCCTCGCCGC------------GGGCGGGTCGCTCG---CGCTCGCGGTG
CTCGAGTGGAGCGCCGACTGCCGCGGCCGCCAGTTCGACCGCATCTTCGGCGTCTGGCTCTCCGGCGCCGAGCTCCTCCG
CAGCTGCACCGCCGAGCCGCGCCCCAACGGCATCCTCTGGTCGGTCTCCCGCGACGTCACGAGGTACGCGGCCCTTCTCT
CCGAGCCTGGCGAGG------TCGTGGTGTACCTTGGCAACATCGTCGACAGCACATACACCGGTGTCTACCACGCCAAC
CTCACGCTCCATCTTTACTTCCACCCCACAACGCCGTCACCGCCGCCGCCGCCGCCG---CATGCCGACTTGATCCTGCC
CATCTCGAGAAGCCTGCCTCTGAACGACGGGCAGTGGTTCGCCATCCAGAATTCCGCTGATGTGCAGTCAAAGAAGCTGG
CCATTCCGTCGAACACCTACAGGGCGGTCCTGGAGGTGTTCGTTTCGTTCCACTCCAGTGATGAGTTCTGGTACACCAAC
CCTCCCAACGAGTACATTGAGGCCAACAATTTGTCCAGCGTCCCTGGCAATGGCGCGTTTCGGGAGGTTATTGTTAAAGT
CGATGACAATGTCGTCGGTGCTGTTTGGCCGTTCACTGTCATCTACACCGGCGGTGTCAACCCGCTTCTCTGGCGGCCAA
TCACCGGCATTGGCTCATTCAATCTACCTACCTATGGCATTGATATCACGCCATTCTTGGGCAAGCTCATGGACGGGAAG
GAGCACAATTTTGGGTTTGCTGTGACCAATGCATTGGATATGTGGTACCTTGATGCTAATTTACATCTGTGGTTGGATCA
CAAGAGCAAGAAGACAGTTGGGAGCTTGATCAGCTATGATGCAGCGTCGTCGGCA---AATGTGGACTCGGAGTTCAGCG
GGCTGGACGGGCGGTTCGTGACGAGCGCAAGCCGGCATGTCTCCGCCACCGGGTGGGTGGAATCGTCGCACGGAAAGGTC
ATGACAACTTTCTACCAGAGATTCAGCTATAGAAACAGCAATGTGTATAGCAAGAACGGCAGTGAGCAAGTGGTGAACCA
AACGATCGACGCCAAGTCAGGTGTTTCCACCACAAACGGCGCCGTG---CTGCT---CTCGGAAGAAGTTCACCAGGTCT
TCCCACTCTATCTTTTCTCTGGGACCTCAGACGAAGTGGGTGATGAGTACTCGCTGGTTTCGGCTGCCGAGCTGGGCATC
AATGAGAAGAGGGTCTCTGGTGCGGAGCAAGGCTTCTCCTACAGCTCTCTGCGGAATGCGCAGTCGGCACGCGGTAGTAT
GAGGGTGAAGGGGAATTTGGTGACTTCCGGGTCCGGTGAGAACCATCAGGTGTATAAATATGTGGGTACCGATGGATGCT
ACTCCAGAGATGTCAGCAGCAAGAACTACACTGTCGTTTTCGACCGCTCTGATGACTCGTGCTTAAAGGGATC-------
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>chr3A_1142
CCAG----------------------------------------------------------------------------
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------------------------------------------------CCCACCACCTTCTTCGAGGTGGACCGGCCGCA
CCGGCCACCGCCGGGAAGCTTCGGCCCATGCTCCACCGTGCTTCTCTCACACTCCTTCGCTTACACCTACACCAAGCCCC
CGGTCACGGCCGCCTACTCCCCGCCGCCGTGCCTCGCCGCCGCGGGCGGACA---CGCCTCGCTGATTTCCCTTGCCGTT
CTCGAGTGGCGATCCGCCTGCCGGGGCGTCCAGTACGACCGCATCTTCGGAGTCTGGCTCGGCGGCGCCGAGCTCCTCCG
CGGCTGCACGGCGGAGCCACGGAGAAACGGCATCGAGTGGTCCGTGTCCAAGGATGTCACCAAGTACGCGTCCCTCCTCG
CCGCCCGCAACCCCTCCACCCTCTCCGTCTACCTCGGCAACGTCGTCGACGAGCAGTACACCGGCGTGTACCACGCCAAC
CTCACGCTCCACCTCTACTTCCGCCACCCGCCGCAGCCTCCGCAGCCCG---GGCTGGGCCCCGCCGACGTCATCGTCCC
CGTCTCGCAGAGCCTCTCGCTGAACGACGGCCTGTGGTTCCAGATCCAGAACGGCGAGGACGTCGGGTCAGCGAGCCTTG
CCGTGCCGACCAACGCCTACCGTGCCGTCCTCGAGGTGTACCTCTCGTACCACGCCCACGACGAGTTCTGGTACACCAAC
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------
--------SS------S----S-------------------------S-----SS--SSSS-------------SS----
-----------------------S-----S---S----------------------------------------------
----------------------------------S---------------------------------------------
--------S-SSS---------------------------S-------------S-------------------------
--------S-----------------------------S--------SSS------------------------------
---------------------S----------------------------------------------------------
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--------------------------------------------------S-------------------S---------
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------------------------------S-S-----------------------------------------------
-------S------------------------------------------------------------------------
--------------------------------------------------------S-----------------------
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------S-------------------------------------------------------------------------
-------------------------------S------------------------------------------------
----------------------------------------------S---------------------------------
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-------------------S--------------------------------------------------------S---
--------------------------------------------------------------------------------
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----------SS-S------------------------------------------------------------------
-------------------------------------------------------SSSS---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------S-----------------------
------------------------S-----S---SS--------------------------------------------
----------------------------S------S------S-------S------SS-----------S--------S
---------------------S-------------------------------------SSS-SSSSS-S----------
-S------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--S---------------------------------S---S---------------------------------------
-----------------------------------------------------------------S-----S--------
------S-------S-----------------------------------SS----------------------------
----------------S------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSS
>forward_516
--------------------------------------------------------------------------------
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----------------CTCGTGTAGGAGGCAGAACC--------------------------------------------
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>reverse_2087
--------------------------------------------------------------------------------
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------GATTTTGGGTTTGCTGTCACCA----------------------------------------------------
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>forward_548
--------------------------------------------------------------------------------
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------------------------------------------------GGTTCGGGTCCTTAGGATGC------------
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>reverse_2797
--------------------------------------------------------------------------------
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----------------------------------------------------------------------------ATCT
AGTGGTGTCAAATTCTCCTCC-----------------------------------------------------------
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-----------
>forward_2192
--------------------------------------------------------------------------------
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------------AACAGTCGGGAGCTTGATCG------------------------------------------------
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-----------
>reverse_4686
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------------CAGATCAGTGGGTGAGCGTT---------------
-----------
