>input_sequence_42959
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-----------------------------------------------------------ATGTCCACCGCTGCCTCTGCG
CTCCGCCCGGCGCCGCGGTGGGTTGCGCCGTCGCAGCGCCGGCTCGTGGAGCAGCACCTGGCGTCACTGCCCCACGGCCT
CCAGCGCCTCCACCACGTGCAGGAGCTCCACGCGCAGCTCCTCAAGCACGGTATCCACCTCGACCCGCTCACCGCCTCCA
AGCTTATCTCCTCATACGCGCTCCAGCGCCGCCTCCCGGCCTCTCGCCGCGTCTTCGCCTCCTTCCCCAATCCTCACGCC
ACCACCTTCCTCCCGAACACCCTTCTCCGCGCCTACGCGCTCAATGCCCTGCCCCACGCCGCGGTCTCTGTCTTCTCCGC
CATGCCCCAGCGGGACAGCTTCACCTACTCCTTCCTCATCAAGGCGCTCTCCTCCGCGGGCTTGACCCCCCTCAGGGCGG
TGCACTCCCACGTCGTTAAACTCGGGTCCATCGAGGACACCTATGTCGGGAACGCGCTGATCGACGCCTACTCCAAGAAC
G--GCGGGTTTTTGGACGCCAGCAAGGTGTTCGAGGAAATGCCTAGCCGGGATACCGTATCCTGGAACTCGGCCATGGCT
GCGATGGTGCGACAGGGCGAGGTGGCAAGTGCGAGGAGGATGTTTGACGAGATGCCGGAGAAGGACACTGTAAGCTGGAA
CACCGTGCTGGACGGGTACACCAAGGCTGGGAAGATGGAGGAGGCGTTCGAGCTGTTTCAGTGCATGCCAGAGAGGAATG
TGGTGTCGTGGTCGACGGTGGTGTCTGGTTACTGTAAGAAGGGTGACATGGAGATGGCTCGAGTGATCTTTGATAAGATG
CCAACCAAGAACTTGGTAACATGGACGATAATGGTCTCGGCATGTGCCCAGAATGGGCTTGTTGAGGAGGCTGGACGGTT
GTTTACTCAGATGAAGGAAGCTGCTGTGGAACTTGATGTGGCTGCGGTTGTGAGTATCTTGGCTGCATGTGCAGAGTCAG
GCTCGCTTGCTCTTGGGAAGAGGATTCACCGGTACGTGCGGACGAGGCAACTGGGGAGGTCGACCCATGTGTGCAATGCA
ATGATTGACATGTTTTGCAAGTGTGGGTGCGTAAACCGGGCTGATTATGTGTTTGACACTGAAATAGCTGAGAAGGATTC
AGTGTCATGGAACACCATAATTGGGGGATTTGCGATGCATGGGCATGGAGACAAGGCGCTGGACTTCTTTGGCCAAATGA
AGCTACAAGGGTTCCGTCCTGATGCCGTGACAATGATCAACGTTCTTAGTGCATGCACACACATGGGGTTTGTGGAAGAG
GGACGCCGGTATTTCTCCAATATGGAGAGGGACTATGGCATTGTGCCACAGATAGAGCATTATGGCTGCATGATTGACCT
TCTTGGTCGTGGAGGGCTCATCGAGGAGGCTGTTGACCTGATAAAAAGCATGCCTTGGGACCCTAATGAGGTAATATGGG
GGTCCCTTCTCAGTGCATGCCGACTGCACAAGAACGTGGAGTATGCAGAAATTGCAGTGAACGAGCTCAGTAAGCTGCAG
CCCTCCAATGCAGGGAACTATGCTGTCCTTTCAAACATCTATGCAGAGGCTGGGCAGTGGAGTGACATGGCAAAGGCAAG
GATGCAAATGAAAGGAACCGGGTCTCAGAAGTCAGCAGGATCAAGTTGGATTGAACTTGATGAGGCATTCCATGAGTTCA
CAGTGGGGGACAGAAAACACTCAGACTCGGACCAGATATCTGAGATGGTTGATAGGCTGAGTTCACATGTTAAGGATGTT
GGCTGCCTTCCAACAGCTAACGAGCTACTTGTGCAGTGA-----------------------------------------
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>chr5D_1_TraesCS5D01G088500
ACGTGCTTTGCTCCTCGGCCCAGGCACGACACATTTAGTAACCGGCCGACCCGTGGCACATTTAACATGTTTGGGCTGCG
TGCTTTTCGGTCTGCTAGGCTATATTTTTTGGCCATT----------TTGGGCCTATTGGATTGTTTCTTAGGTCATA--
--------TATATATATAATAGTATGTATGCACGTGCAACGCACGTTTTAACATTATTATGGAATGTTTTTTGGTTTTAA
AAAA-ATAGACTTGCCAATAGATTCATCAAGGCAAAA-TGAAAATATCGTTTATGTACAGATGCAGAAAGAAAATACATT
ACAAAAAA--GTAGGAGTTAATATATGTAATCCCCGTAATTTGTTAAGAAAGAAAATAATTCATAAAATTGCTTGCCGAA
ATGTTTTATATTGTGGGATGGAGAGAGTATAACTTTTTTTTTGAGTAACGAGAGAGTATAACTTTACCGTATATTTCCTC
TCTGAAAACAACTTTTCATGGGCTCAACACGTCCTCAAACTGCAACATGGGCTAAGAGGAATCAATATGGGCCACTTATT
TTGAGAAGGATGAGGCGATCGTTCTGGAACATTGTGGATGGAGCAGCGATGTACTGTTCATTGCGAATCCCACTCTTTTC
AGCTGTTGGATTTAGCACACGAATGGCTAGGATCGATGATCATGCCCGATTCACCACCTTCCTCACTATAAGTAGTATAG
ATATATTCAAAAATTCAAAAAAAAAACGTGCCGCGTGCCTGGCATG-GCCCATTTAGGCTGTGCCGTGCGTGCTTCTAGC
ACGAGAAAGCACGGCCTGTTTGGCCAGCTATACCTTGTA-----------------------------GTAG--------
--------------------------------------------------------------------------------
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-------------------------------------CACACTGCCTATCCCGGGAGAATGTTTTTGGCGCTGACCCACA
TGTCATCGAGCAAGACCACATCCGCAGGGCCTTCTCCTTGCCTGAGCAGCTCCTCTTCCCTCTCCGGCAACAATTACCGC
AAACCACCGCCCCCTCACCGGCGGCAATCACAGCGGCGCCATAGCCAGTCCGAACGCCAATGTCCACCGCTGCCTCTGCG
CTCCGCCCGGCGCCGCGGTGGGTTGCGCCGTCGCAGCGCCGGCTCGTGGAGCAGCACCTGGCGTCACTGCCCCACGGCCT
CCAGCGCCTCCACCACGTGCAGGAGCTCCACGCGCAGCTCCTCAAGCACGGTATCCACCTCGACCCGCTCACCGCCTCCA
AGCTTATCTCCTCATACGCGCTCCAGCGCCGCCTCCCGGCCTCTCGCCGCGTCTTCGCCTCCTTCCCCAATCCTCACGCC
ACCACCTTCCTCCCGAACACCCTTCTCCGCGCCTACGCGCTCAATGCCCTGCCCCACGCCGCGGTCTCTGTCTTCTCCGC
CATGCCCCAGCGGGACAGCTTCACCTACTCCTTCCTCATCAAGGCGCTCTCCTCCGCGGGCTTGACCCCCCTCAGGGCGG
TGCACTCCCACGTCGTTAAACTCGGGTCCATCGAGGACACCTATGTCGGGAACGCGCTGATCGACGCCTACTCCAAGAAC
G--GCGGGTTTTTGGACGCCAGCAAGGTGTTCGAGGAAATGCCTAGCCGGGATACCGTATCCTGGAACTCGGCCATGGCT
GCGATGGTGCGACAGGGCGAGGTGGCAAGTGCGAGGAGGATGTTTGACGAGATGCCGGAGAAGGACACTGTAAGCTGGAA
CACCGTGCTGGACGGGTACACCAAGGCTGGGAAGATGGAGGAGGCGTTCGAGCTGTTTCAGTGCATGCCAGAGAGGAATG
TGGTGTCGTGGTCGACGGTGGTGTCTGGTTACTGTAAGAAGGGTGACATGGAGATGGCTCGAGTGATCTTTGATAAGATG
CCAACCAAGAACTTGGTAACATGGACGATAATGGTCTCGGCATGTGCCCAGAATGGGCTTGTTGAGGAGGCTGGACGGTT
GTTTACTCAGATGAAGGAAGCTGCTGTGGAACTTGATGTGGCTGCGGTTGTGAGTATCTTGGCTGCATGTGCAGAGTCAG
GCTCGCTTGCTCTTGGGAAGAGGATTCACCGGTACGTGCGGACGAGGCAACTGGGGAGGTCGACCCATGTGTGCAATGCA
ATGATTGACATGTTTTGCAAGTGTGGGTGCGTAAACCGGGCTGATTATGTGTTTGACACTGAAATAGCTGAGAAGGATTC
AGTGTCATGGAACACCATAATTGGGGGATTTGCGATGCATGGGCATGGAGACAAGGCGCTGGACTTCTTTGGCCAAATGA
AGCTACAAGGGTTCCGTCCTGATGCCGTGACAATGATCAACGTTCTTAGTGCATGCACACACATGGGGTTTGTGGAAGAG
GGACGCCGGTATTTCTCCAATATGGAGAGGGACTATGGCATTGTGCCACAGATAGAGCATTATGGCTGCATGATTGACCT
TCTTGGTCGTGGAGGGCTCATCGAGGAGGCTGTTGACCTGATAAAAAGCATGCCTTGGGACCCTAATGAGGTAATATGGG
GGTCCCTTCTCAGTGCATGCCGACTGCACAAGAACGTGGAGTATGCAGAAATTGCAGTGAACGAGCTCAGTAAGCTGCAG
CCCTCCAATGCAGGGAACTATGCTGTCCTTTCAAACATCTATGCAGAGGCTGGGCAGTGGAGTGACATGGCAAAGGCAAG
GATGCAAATGAAAGGAACCGGGTCTCAGAAGTCAGCAGGATCAAGTTGGATTGAACTTGATGAGGCATTCCATGAGTTCA
CAGTGGGGGACAGAAAACACTCAGACTCGGACCAGATATCTGAGATGGTTGATAGGCTGAGTTCACATGTTAAGGATGTT
GGCTGCCTTCCAACAGCTAACGAGCTACTTGTGCAGTGAGTCCTTTGCCAAGGGTATGCTAAATTGCTCATGTCACAGTC
ACAAA--TGTGAAATGCTTTCATGAGGTGTTAGCATTGCACGGCGCAATCTATGTAAGCAAGCACCAGCTCCAGTGAATC
CTGCAATCAAGAAGATGCTGTGA--------------------------CTTGGTACAGAATTACCCACGATGGACTGGA
AACCCAGACATGTGTTCAAGCATTTCTCAGCATGTGCTCTTCTGCCATCAGGTTTGCTCTGTCGAAAACTGCAACTATGT
TAAGACGAAAGCTGGTGATAGGATGGACTGACAAAACACTACCAATACAGTGCTAGGTTGATTGA-------ATAGTTCA
TAGGTTAGTACTTCTAGTGCTTCACTTCATTTGGTTTATCGAAACCAAAACAAGCCATGAGGTAGGGTCTTCTAAAATAT
AAGGAAGTGAGAAGACCTCACATT-AAAAAGTAAGAAGTGATTTCTGTAGTTACATTGTAG------CAG-AAAGTGGTT
ATGTTGGAAAAGTTGAATAGTTGAGTGTCTTACAGTCGTTCATCCCATTTTTTGCATGTATCACTTTCATAAGAATGTTT
TAGTGAGAAA--AGCATACAATCTTCG-TAATATTCAGATTCGGTTATTAAGCTTGTATGTCCTACAAAACCGTATAAAT
CATTCATTTGTACTTACTTTTTAAGGTTGTATTTCATGCTTCTTAGATATCTTAGTGTCATGCTATGTTATGAGGTTTA-
TTTTTTGTCTATTCTCTTGTTTCTCTGTCTTCTGT--CAAATTTTAACTCATTGCTAAGAC--TACAAAGAATCCTGATT
TAGGTTGCTGTGATGTTTATGATAAATATTCAACA----TGATATTTTTTTTGGTATGCATCTGGATTATACCTGAATAT
TTAAGTTATCAAGTGGAATGTTTGGAACTTCAATAATTAGTTCACAAAAATTCAAAAAATAAATAAATTAGTTCACCAAG
TTCAGACTGGTCCATGTCTTTTAGAAGTCATTGTTATGCTAAGAAATGGCTTGT
>chr5B_1
ACGTGCCTTGCTCCTCGGCCCAGGCACGACACATTTAGCAATCGGCCGACCCGTGGCACATTTAACACGTTTGGGCTGCG
TGCTTTTCTGTCTGCTAGGCTATAT----------TT----------TTGGGCCTATTGGATTGTTTCTTAGGTCATA--
--------TAT---------------------------------------------------------------------
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------TCAAAAATTCAAAAAAAAA--GTGCCGCGTGCCGGGCATTTGCCCATATAGGCTGTGTCGTGCGTGCTTCTACC
ACGAG-AAGCACGGCCTGTTTGGCCAGCTATACCCTCTAGCTTGTCTCAAAAAAAAAGGCTATACCTTGTAGTGGAAAAT
AATTCTATGAGACCCATCCTGATGGATGACACGTAGCATTCACAAATCACAAAGCATCTACTCCACCCCCACCTGAAATC
AGGGGGGGAGATTAGATACTTTGTGATTTGTGAATGCCACATGTCATCCATCAGAGCGGGTCTCACCTGTTTTATATGAG
ACCTGGTCTCATATAATTTTTTTTCCCCTTGTAGTAGCACACTGCC-ATCCAGGGAGAAGGTTTTTGGCGCTGACCCACA
TGTCATCGAGCAAGACCACATCCGCAGGGCCTTCTCCTGGCCTGAGCAGCTCCCCTTCCCTCTCCGGCAACAATTACCGC
AAACCACCGCCCCCTCTCCGGCGGCAACCACAGCGGCGCCATAGCCAGTCCGAACGCCAATGTCCACCGCTGCCTCTGCG
CTCCGGCCGGCGCCGCGGTGGGGTGCGCCGTCGCAGCGCCGGCTCGTTGAGCAGCACCTGGCGTCACTGCCCCACGGCCT
CCAGCGCCTCCGCCACGTGCAGGAGCTCCACGCGCAGCTCCTCAAGCACGGTATCCACCTCGACCCGCTCACCGCCTCCA
AGCTTATCTCCTCATACGCGCTCCAGCGCCGCCTCCCGGCATCCCGCCTCGTCTTCGCCTCCTTCCCCAATCGTCACGCC
ACCACCTTCCTCCCGAACACCCTTCTCCGCGCCTACGCGCTGAATGCCCTGCCCCACGCCGCGGTCTCTGTCTTCTCCGC
CATGCCCCAGCGGGACAGCTTCACCTACTCCTTCCTCATCAAGGCGCTCTCCTCCGCGGGCTTGAACCCCCTCAGAGCGG
TGCACTCCCACGTCGTTAAACTCGGGTCCATCGAGGACACCTATGTCGGGAACGCGCTGATCGACGCCTACTCCAAGAAC
G--GCGGGTTTTTGGACGCCAGCAAGGTGTTCGAGGAAATGCCTAGACGGGATACTGTATCCTGGAACTCGGCCATGGCT
GCGATGGTGCGACAGGGGGAGCTGGCAAGTGCGAGGAGGATGTTTGACGAGATGCCGGAGAAGGATACGGTAAGCTGGAA
CACCGTGCTGGACGGGTACACCAAGGCTGGGAAGATGGAGGAGGCGTTCGAGCTGTTTCAGTGCATGCCAGAGAGGAATG
TGGTGTCGTGGTCGACGGTGGTGTCTGGTTACTGTAAGAAGGGTGACATGGAGATGGCTCGAGTGATCTTTGATAAGATG
CCAACCAAGAACTTGGTAACGTGGACGATAATGGTCTCGGCATGTGCCCAGAATGGGCTTGTTGAGGAGGCTGGACGGTT
GTTTACTCAGATGAAGGAAGCTGCTGTGGAACTTGATGTGGCTGCGGTTGTGAGTATCTTGGCTGCATGTGCAGAGTCAG
GCTCGCTTGCTCTTGGGAAGAGGATTCACCGGTACGTGCGGACAAGGCAACTGGGGAGGTCGACCCATGTGTGCAATGCA
ATGATTGACATGTTTTGCAAGTGTGGATGCGTAAACCGGGCTGATTATGTCTTTGACACTGAAATAGCTGAGAAGGATTC
AGTGTCATGGAACACCATAATTGGGGGATTTGCGATGCATGGGCATGGAGACAAGGCGCTGGACTTCTTTGCCCAAATGA
AGCTACAAGGGTTCCGTCCTGATGCTGTGACAATGATCAACGTTCTTAGTGCATGCACACACATGGGGTTTGTGGAAGAG
GGACGCCGGTATTTCTCCAATATGGAGAGGGACTATGGCATTGTGCCACAGATAGAGCATTATGGCTGCATGATTGACCT
TCTTGGTCGTGGAGGGCTCATCGAGGAGGCTGTTGACCTGATAAAAAGCATGCCTTGGGACCCTAATGAGGTAATATGGG
GGTCCCTTCTCAGTGCATGCCGACTGCACAAGAACGTGGAGTATGCAGAAATTGCAGTGAACGAGCTCAGTAAGCTGCAG
CCCTCCAATGCAGGGAACTATGCTGTCCTTTCAAACATCTATGCAGAGGCTGGGCAGTGGAGTGACATGGCAAAGGCAAG
GATGCAAATGAAAGGAACCGGGTCTCAGAAGTCAGCAGGATCAAGTTGGATTGAACTTGATGAGGCATTCCATGAGTTCA
CGGTGGGGGACAGAAAACACTCAGACTCGGACCAGATATCCGAGATGGTTGATAGGCTGAGTTCACATGTTAAGGATGTT
GGCTGCCTTCCAACAGCTCATGAGCTGCTTGTGCAGTGAGTCCTTTGCCAAGGGTGTGCTAAATTGCTCATGTTGCAGTC
ACAAA--TGTGAAATGCTTTCGTGAGGTGTTAGCATTGCACGGTGCAATCTATGTAAGCAAGCACCGGCTCCAGTGAATC
CTGCAATCAAGAAGATGCTGTGA--------------------------CGTGGTACAGAATTACCCACGATGGACTGTA
AACCCAGACATGTGTTCAAGCATTTCTCAGCATGTGCTCTTCTGCCATCAGGTTTGCTCTGTCGAAAACTGCAACTATGT
TAAGACGAAAGCTGGTGATGGGATGGACTGACAAAACACTACCTATACAGTGCTAGGTTAATTGA-------ATAGTTCA
TAGGTTAGTACTTCTAGTGTTTCACT-CAACTGGTTAATTGAAACCAAAACAAGCCATGAGGTAGGGTCTTCTAAAATAT
AAGGAAGTGAGAAGACCTCACATTAAAAAAGTAAGAAGTGATTTCTGTAGTTACATTGTAG------CAG-TAAGTGGTT
ATGTTGGAAAAGTAGAATAGTTGAGTGTTTTACAGTCGTTCATCCCATTTTTTGCATGTATCACTTTCATAAGAATGTTT
TAGTGAGAAA--AGCATACAATCTCCG-TAATATTCTGATTCGGGTATTAAGCTTGTATCTCCTACAAAACCGTATAAAT
CATTCATTTGTACTTACTTTTTAAGTTTGTATTTCACACTTCTTAGATATGTTAGTGTCATGCTATGTTATGAGGTTTA-
TTTTTTGTCTATTATCTTGTTTCTCTGTCTTCTGTTTCAACTTATAACTCACTGCTAAGAC--TG--AAGAATCCTGATT
TAGGTTGCTGTGATGCTTATGATAAATATTCAGCC----TGAT-ATTTTTTTGGTATGCATCTGGGTCATACCTGAATAT
TTAAGTTATCAAGAGGAATGTTTGGAACTTCAATAATTG-------------------------------GTTCACCAAG
GTCAGACTGGTCCATGTCTTTTAAAAGTCATTGTTATGCTAAGAAATGGCTTGT
>chr5A_1
ACGTGCCTTACTCCTCGGCCCAGGCACGATACATTTAGTAACCGGCCGACCCGTGGCACATTTAACATGTTTGGGCCGCG
TGCTTTTCGGTCTGCTAGGCTATAT----------TTCTGGGCCATTTTGGGTCTATTGGATTGTTTCTTAGGTTATATA
TATATATATAT---------------------------------------------------------------------
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------TCAAAAATTCGAAAAAAAA--GTGCCGCGTGCCGTGCATG-GCCCATTTAGGCTGTGCCGTGCGTGCTTCTAGC
ACGAG-AAGCACGGCCTGTTTGGCCAGCTATACCCTCTAGCTTGTCTCAAAAAAAAAAGCTATACCTTGTAG--------
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-------------------------------------CACACTGCCTATCCCGGGAGAAGGTTTTTGGCGCTGACCCACA
TGTCATCGAGCAAGACCACATCCGCAGGGCCTTCTCCTGGCCTGAGCAGCTCCCCTTCCCTCTCCGGCAACAATTACCGC
AAACCACCGCCCCCTCTCCGGCGGCAACCACAGCGGCGCCATAGCTAGTCCGAACGCCAATGTCCACCGCTGCCTCTGCG
CTCCGCCCGGCGCCGCGGTGGGGTGCGCCGTCGCAGCGCCGGCTCGTGGAGCAGCACCTGGCGTCACTGCCCCACGGCCT
CCAGCGCCTCCACCACGTGCAGGAGCTCCACGCGCAGCTCCTCAAGCACGGTATCCACCTCGACCCGCTCACCGCCTCCA
AGCTTATCTCCTCATACGCGCTCCAGCGCCGCCTCCCGGCCTCCCGCCGCATCTTCGCCTCCTTCCCCAATCCTCACGCC
ACCACCTTCCTCCCGAACACCCTTCTCCGCGCCTACGCGCTCAATGCCCTGCCCCACGCTGCGGTCTCTGTCTTCTCCGC
CATGCCCCAGCGGGACAGCTTCACCTACTCCTTCCTCATCAAGGCGCTCTCCTCAGCGGGCTTGACTCCCCTCAGGGCGG
TGCACTCCCACGTCGTTAAACTCGGGTCCATCGAGGACACCTATGTCGGGAACGCGCTGATCGACGCCTACTCCAAGAAC
G--GCGGGTTTTTGGACGCCAGCAAGGTGTTCGAGGAAATGCCTAGCCGGGATACCGTGTCCTGGAACTCGGCCATGGCT
GCGATGGTGCGACAGGGCGATGTGGTAAGTGCGAGGAGGATGTTTGACGAGATGCCGGAGAAGGACACGGTAAGCTGGAA
CACCGTGCTAGATGGGTACACCAAGGCTGGGAAGATGGAGGAAGCGTTCGAGCTGTTTCAGTGCATGCCAGAGAGGAATG
TGGTGTCGTGGTCGACGGTGGTGTCTGGTTACTGTAAGAAGGGTGACATGGAGATGGCTCGAGTAATCTTTGATAAGATG
CCAACGAAGAACTTGGTAACGTGGACGATAATGGTCTCGGCATGTGCCCAGAATGGGCTTGTTGAGGAGGCTGGACGGTT
GTTTACTCAGATGAAGGAAGCTGGTGTGGAACTTGATGTGGCTGCGGTTGTGAGTATCTTGGCTGCATGTGCAGAGTCAG
GCTCGCTTGCTCTTGGGAAGAGGATTCACCGGTACGTGCGGACAAGGCAACTGGGGAGGTCGACCCATGTGTGCAATGCA
ATGATTGACATGTTTTGCAAGTGTGGATGTGTAAACCGGGCTGATTATGTCTTTGACACTGAAATAGCTGAGAAGGATTC
AGTGTCATGGAACACCATAATTGGGGGATTTGCGATGCATGGGCATGGAGACAAGGCGCTGGACTTCTTTGCCCAAATGA
AGCTACAAGGGTTCCGTCCTGATGCTGTGACAATGATCAACGTTCTTAGTGCATGCACACACATGGGGTTTGTGGAAGAG
GGACGCCGGTATTTCAACAATATGGAGAGGGACTATGGCATTGTGCCACAGATAGAGCATTATGGCTGCATGATTGACCT
TCTTGGTCGTGGAGGGCTCATCGAGGAGGCTGTTGACCTGATAAAAAGCATGCCTTGGGATCCTAATGAGGTAATATGGG
GGTCCCTTCTCAGTGCATGCCGACTGCACAAGAACGTGGAGTATGCAGAAATTGCAGTGAACGAGCTCAGTAAGCTGCAG
CCCTCCAATGCAGGGAACTATGCTGTCCTTTCAAACATCTATGCAGAGGCTGGGCAGTGGAGTGACATGGCAAAGGCAAG
GATGCAAATGAAAGGAACCGGGTCTCAGAAGTCAGCAGGATCAAGTTGGATTGAACTTGATGAGGCATTCCATGAGTTCA
CGGTGGGGGACAGAAAACACTCAGACTCGGACCAGATATCCGAGATGGTTGATAGGCTGAGTTCACATGTTAAGGATGTT
GGCTGCCTTCCAACAGCTCATGAGCTGCTTGTGCAGTGAGTCCTTTGCCAAGGGTGTGCTAAA--TCTCATGTTGCAGTC
ACAAA--TGTGAAATGCTTCCGTGAGGTGCTAGCATTGCACGGTGCAATCTATGTAAGCAAGCACCGGCTCCAGTGAATC
CTGCAATCAAGAAGATGCTGTGA--------------------------CGTGGTACAGAATTACCCACGATGGACTGTA
AACCCAGACATGTGTTCAAGCATTTCTCAGCATGTGCTCTTCTGCCATCAGGTTTGCTCTGTCGAAAACTACAACTATGT
TAAGACGAAAGCTGGTGATGGGATGGACTGACAAAACACTACCAATACAGTGCTAGGTTGATTGA-------ATAGTTCA
TAGGTTAGTACTTCTAGTGCTTCACT-CAACTGGTTAATTGAAACCAAAACAAGCCATGAGGTAGGGTCTTCTAAAATAT
AAGGAAGTGAGAAGACCTCACATTAAAAGAGTAAGAAGTGATTTATGTAGTTACATTGTAG------CAG-AAAATGGTT
ATGTTGGAAAAGTAGATTAGTTGAGTGTTTTACAGTCGTTCATCCCATTTTTTGCATGTATCACTTTCATAAGAATGTTT
TAGTGAGAAA--AGCATACAATCTCCG-TAATATTCTAATTCGGGTATTAAGCTTGTATCTCCTACAAAACCGTATAAAT
CATTCATTTGTACTTACTTTTGAAGTTTGTATTTCACGCTTCTTAGATATGTTAGTGTCATGCTATGTTATGAGGTTTAT
TTTTTTGTCTATTATCTTGTTTCTCTGTCTTTTGTTTCAACTTATAACTCACTGCTAAGACTATG--AAGAATCCTGATT
TAGGTTGCTGTGATGTTTATGATAGATATTCAACA----TGATATTTTTTTTGGTATGCATCTGGGTCATACCTGAATAT
TTAAGTTATCAAGCGGAATGTTTGGAACTTCAATAATTG-------------------------------GTTCACCAAG
TTCAGACTGGTCCATGTCTTTTAAAAGTCATTGTTATGCTAAGAAATGGCTTGT
>chr2A_145
CATAATATA-----------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------ATACTAGTATGTATGCACGTGCAACGCACATTTTAACATTATTATGAAGTGGTTTTTGGTTTAAA
AAAACATAGACTTGCCAATAGAT---TCAAGGCAAAA-TGAAAATATCATTTATGTACGGATGCAGAAAGAAAATATATT
ACAAAAAA--GTAGGAGTTAATATATGTAATCCCTGTAATTTGTTAAGAAATAAAATAATTCATAAAATTGCTTGCCAAA
ATGTTTTATATTGTGGGATGGAGAGAGTATAACTTTACT-----------------------------GTATATTTCCTC
TCTGAAAACAACTTTTCATGGGCTCAACACGTCCTCAAACTGCAACATGGGCCAAGAGGAACCAATATGGGCCACTTATT
TTGAGAAGGATGAGGCGATCGTTCTGGAACATTGTGGATGGAGCAGCGATGTAATGTTCATTGCGAATCCCATTCTTTTT
AGCCGTTGGATTTAGCACACGAATGGCTAGGATTGATGATCATGCCCAAGTCAAAACTGATA-CACTATAAGTAGTATA-
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>chr7D_155
T-------------------------------------------------------------------------------
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---------------ATACTAGTATGTATGCACGTGCAACGCACGTTTTAACATTATTATGGAC----TTTTGGTTTAAA
AAAACATAGACTTGCCAATAGGT---TCAAGGCAAAA-TGAAAATATCGTTTATGTACGGATGCAGAAAGAAAATACATT
A-AAAAAA--GTAGGAGTTAATATATGTAATCCCCGTACTTTGTTAAGAAAGAAAATAATTCATAAAATTGCTTGCCGAA
ATGTTTTATATTGTGGGATGGAGAGAGTATAACTTTACT-----------------------------GTATATTTCCTC
TCTGAAAACAATTTTTCATGGGCTCAACACGTCCTCAAACTGCAACATGGGCCAAGAGGAATCAATATGGGCCACTTATT
TTGAGAAGGATGAGGCGATCATTCTGGAACATTGTGGATGGAGCAGCGATGTACTGTTCATTGCGAATCCCACTC-----
AGCCGTTGGATTTAGCACACGAATGGCTAGGATTGATGATCATGCCCAATTCAAAACTGGTA-CACTCTAAGTAGTATAG
ATTTA---------------------------------------------------------------------------
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>chr1A_156
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---------------ATACTAGTATGTATGCACGTGCAACACACGTTTTAACATTATTATGAAGTGGTTTTTGATTTTAA
AAAACATAGATTTGCTAGTAGAT---TCAAGGAAAAA-TGAAAATATCGTCTATGTACGGATGCAGAAAGAAAATACATT
A-CAAAAAAA-TAGGAGTTTGTCTATGTAATCCCCGTAATTTGTTAAGAAAGAAAATAATTCATAAAATTGCTTGCCGAA
ATGTTTTATATTGTGGGATGGAGAGAGTATAACTTTACT-----------------------------GTATATTTCCTC
TCTGAAAACAACTTTTCATGGGTTCAACACGTCCTCAAACTGCAACATGGCCCAAGAGGAATCAATATGGGCCACTTATT
TTGAGAAGGATGAGGCGATCGTTCTAGAACATGGTGGATGGAGCAGTGATGTAATGTTCATTGCGAATCCCACTCTTTTC
AGCCATTGGATTTAGCACACGAATGGCTAGGATTGATGATCATGCCCAATTCAAAACTGATA-CACTATAAGTAGTATAG
ATAT----------------------------------------------------------------------------
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>chr6D_160
--------------------------------------------------------------------------------
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-------------------TAGTATGTATGCACGTGCAACACACGTTTTAACATTATTATGGAGTGGTTTTTGGTTTTAA
AAA--ATAGACTTGCCAATAGAT---TCAAGGCAAAA-TGAAAATATCGTTTATGTACGGATGCAAAAAGAAAATACATT
A-CAAAAAAAGTAGGAGTTAATATATGTAATCCCTGTAATTCGTTAAGAAA-AAAATAATTCATAAAATTGCTTGTCGAA
ATGTTTGATATTGTGGGATGGAGAGAGTATAACTTTACT-----------------------------GTATATTTCCTC
TCTGAAAACAACTTTTCATGGGCTCAACACGTCCTTAAACTGCAACATGGGACAAGAGGAATCAATATGGGCCACTTATT
TTGAGAAGGATGAGGCGATCATTCTGGAACAGTGTGGATGGAGCAGCGATGTACTGTTCATTGCGAATCCCACTCTTTTC
AGCCATTGGATTTAGCACACGGATGGCTAGGATTGATGATCATGCCCAATTCAAAACTGATA-CACTATAAGTAGTATAG
ATAT----------------------------------------------------------------------------
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>chr4D_160
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-------------------TAGTATGTATGCACGTGCAACGCACGTTTTAACATTATTATGGAGTGGTTTTTGGTTTTAA
ACAACATAGACTTGCCAATAGAT---TCAAGGCAAAAATGAAAATATGGTTTATGTACAGATGCAGAAAGAAAATACATT
ACAAAAAA--GTAGGAGTTAATATATGTAATCCCCGTAATTTGTTAAGAAATAAAATAATTCATAAAATTTCTTGCCGAA
ATGTTTTATATTGTGGGATGGAGAGAGTATAAATTTACT-----------------------------GTATATTTCCTC
TCTGAAAACAACTTTTCATGGGCTCAACACGTCCTCAAACTGCAACATGGGCCAAGGGGAATCAATATGGGCCACTTATT
TTGAGAAGGATGAGGCGATCGTTCTGGAACATTGTGGATGGAGCAACAATGTACTGTTCATTGCAAATCCCACTCTTTTC
AGCCGTTGGATTTAGCACACGATTGGCTAGGATTGATGATCAAGCCCAATTCATAACTGGTA-CACTATAAGTAGTATAG
AT------------------------------------------------------------------------------
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>chr5A_1469
GGGAC---------------------------------------------------------------------------
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-----------------------------------------------------GCGCTGATCGACCCATGCTACAGGAAC
GGGTCGGGTTCTTGGACGCCAGCAAGGTGTTCGAGGAAATGCCGAGACGGGACATCGTGTCCTGGAGCACGGCCATGGCT
GCGATGGTGCGACAGGGGGAGGTGGCCAATGCGAGGTGGATGTCTGAAGAGATGCCAGAGAAGGAGGCGGTAAGCTGGG-
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----------------------------------ACATCTATGCTGAGGCTGGGCAGTGAAGGGATATGGCGAAAGCAAG
GATACAAATGAAAGGAACTGGGTTTCAAAAGTCAGCAGCGTTAAATTGGATTGAACTTGATGAAGCATTCCATGAGTTCA
CAGCGGGGGGCAGAAAATACTCAGACTCATACCAGATATCCGAGATGGTTGACAGTCTGAGTTCG--TGTTAAGGATGTT
GGCTGCATTCCAGCAGGTCATGAGATCCTTGTGCAGTGAGTCCTTTGCCAACGGCATGCTCAGTTTCTCATGTCGCAGTG
ACAAACATGTGAAATGTT---------------------------CAATCTATGTACGGAAGCACTGGCTCCAGTGAATC
CTGCAACCAAAAAGATGTTGTGACATGTAACAAGAAGACAACGTTGTGTCGTGTTACAGAATTGCCCACGATGGATTGAG
AACCCAGAGATCCGTTCAAGGATTTCTCAGCATCTGCTCTTCTGCCATCAGGTTTGCTCTGTCACAAACTGCTACTATGT
TAAGATGAAAGCTGGTGATGGAATGGACTGACCAAACACTACCAATATAGTGCTAGGTTTATCGA-------ATAGTTCA
TAGGTTGGTACTTTTAATGCTTCACTTTTTCTGGTCAATCAAAATCAAAAC----------------------AAAAAAT
AAGAAAGTGAGAAGACCTCAGAATAAAATAG-AAGAAGTGATTTTGATAGTTATATTGTAG------CAGCAAAGTGATT
ATGTTGGAAAAGTGGAATAGTTGAGTGTTTTA----------------TTTTTGCATGTACCACTT-CATAAGAATGTCT
TAGAGATGAAGCAGCATACAGTCTTCGGTAAAATTCTGAGTCAGGTATCAAGCTTGTATCTCATACAACAA--TATAAAT
CATCCATTTGTAATTTTTTTTCG---TTGTCTTTCATGCTTTGTATACATGTTAATGGCATGCTATGTTATAAGGTCTTT
TTTTC----------------------TCTCCTGTTTCAAGTTTTAACTCACTGCTAAGA-TATG--AAGAAGCCTGATT
TAGGTTGCTGTGATATTTATGATAACTATTCACACATGATGTT-TTTTGTTTGGCATGCATCTGGGTCATAC--------
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>chr5B_1470
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------------------------------------------------GGAACGCGCTGATCGACGCATGCTCCAGGAAC
GGGGCGGGTTCTTGGACGCCAGCAAGGTGTTCGAGGAAATGCCGAGAAGAGACA-TGTGTCCTGGAGCACGGCCATGGCT
GCGATGGTGCGACAGGGGGAGGTGGCCAATGCGAGGATGATGTCTGAAGAGATGCCAGAGAAGGAGATGGTAAGCTGGG-
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----------------------------------ACATCTATGCTGAGGCTGGGCAGTGAACGGATGTGTCAAAAGCAAG
AATGCAAATGCAGGGAACTGGGTCTCAAAGGTCAGCAGGGTTAAATTGGATTACC-----------------------CA
CGGATGGAAGCAGGGTCAACTGGGTCTCAAAGGTCAAAACGGAT------------------------------------
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---------------------------------------------------------GGAAGCACTGGCTCCAGTGAATC
CTGCAACCAGAAAGATGCTGTGACATGACAAGAAATCGC-----TGTGTCGTGTTACAGGATTACCCACGATGGATTGAG
AACCCAGAGACCCGTGCAAGGATTTCTCAGCATCTGCTCTTCTGCCATCAGGTTTGCTCTGTCACAAACTGCTACTATGT
TAAAATGAAAGCTGGTGATGGAATGGACTGACCAAACACTGCCAATATAGTGCTAGGTTTATCGGATAGTTCATACTTCA
TAGGTTAGTACTTTTAATGCTTCACTTCATCTGGTTAATCAAAATCAAAACTAGCTATAAGGTTAGGGTCCTCTAAAAAT
AAGAAAGTGAGAAGACCTCAGAATAAAAAAG-AAGAAGTTACTT--ATGGTTATATTGTAGTTGTAGCAGCAAAGTGATT
ATGTTGGAAAAGTGGAATAGTTGAGTGTTTTA---------------TTTTTTGCATGTACCACTT-CATAAGAATGTCT
TGGAGACGAAGCAGCATACAGTCTTCGGTAAAATTCCGAGTCAGGTATCAAGCTTGTATCTCGTACAACAA--TATAAAT
CATCTATTTGTACTTCTTTTTTG---TTGTCTTTCATGCTTCGTATACATGTTAATGGCATGCTATGTTATAAGGTCTTT
TTTTTTGTT--------------------TCCTGTTTCAAGTTTTATCTCACTGCTAAGA-TATG--AAAAAGCCTAATT
TAGGTTGCTGTCATGTTTATGATAACTACTC-------------------------------------------------
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>SNPs
------S-------------------------------------------------------------------------
-------------------------SSSSSSSSSS---------------------------------------------
-----------SSSS---S--------------------------------------------S--S-------------
-----------------------SSS------------------------------------------------------
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------------------------------------SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------
----------------------------------------------------S---------------------------
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---S-----------------------------S-------------S-----SS--SSSSSS-----------------
-----S-------------------SS------------S----------------------------------------
-----S----------------------------S-S-------------------------------------------
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-----------------------------------------------------------S--------------------
--------------------------------------S--------------S--------------------------
----------------S----------S----------------------------------------------------
----------------------S---------------------------------------------------------
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-------------------------------------------S------------------------------------
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--------------------------------------------------------------------S-----------
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--------------------S-----------------------------------------------------------
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-------------------------------------------S------------------------------------
--------------------------S-----------------------S-----------------------------
-----------------------------------------------------------------------S--------
-------------------------S------------------------------------------------------
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----------------------------------------S---------------------------------------
------------------S-S-----S-----------------------------------------------S-----
---------------------S---------------------S----------------------S-------------
--------------------------------------------------S---------------------------S-
--------------------------------------------------------------------------------
-------------------S------------------------------------------------------------
------------------------------S-----S-------------------------------------------
--------------------------------------------------------------------------------
-------------S--------------S---------------------------------------------------
------------------------------------S-------S--------------S--------------------
-------------------------S------------------------S-----------------------------
-------------S--------------------------S----------S------------SSS-------------
-----------------------------------------------------------------S-S------------
-------------S------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------
-----------------------S------------------------------
>forward_1100
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----------------------------------------ACTGCCTATCCCGGGAGAAT--------------------
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>reverse_1909
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--------------------------------------------------------------------TGTAAGCTGGAA
CACCGTGC------------------------------------------------------------------------
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>forward_1217
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-------------------------------------------------------------------------------C
AAACCACCGCCCCCTCA---------------------------------------------------------------
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>reverse_3187
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------------------------------------------------------------------AGCTCCAGTGAATC
CTGCAA--------------------------------------------------------------------------
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------------------------------------------------------
