>input_sequence_42913
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-------------TTATATATTGCATTTTTCGTCTAA--ATATCTCCACCATAACGTCTAAAGATCGCATTTTTCGTTTT
CTTTCCCTTGGTTCCCACATCGTATTTTGTGTGTGGTGGCCGGCGAGATGGACGCCAATGACGATGCCAATGGTTTCTGC
TTCCCCTATGACGTGCTCCTCGAGATCCTCCATCGCCTCCCAGCTCGCGCCCTCGCTGACTCCCGGCGCGTCTGCCACGC
GTGGCGCACCATCATCGACGCCCACAGCCTCCTCCTTCCCCACGCCTTCCCGCGCGAGTTCCCTGGCATCTACACTATCA
TCTACTATGGATTCACATCTGACTCTGCCTTGTTCGTCCGGCCTATGTCACAGTCGGATGAGCCTGGCTATCGACGCCCT
TTCAGCTGGGGCGATTGGGGCATGTGCACACAACAACACTGCAATGGCCTCTTCCTTGTCCGGGATAGTTACCACCTGGA
ATATGCCAATGAAATGTACGCGTGCAACCCAACGACAGTACGGGCTGCCCATCTGCCAAGGCCTCCGACACCGTGGCCAT
GCAATGTTGAGGGAATGTTTCTCGCCTTCGACCCGGCCATGTCACGGTATCACAAGGTATTCCTCCTTCCTTCAAAGAAA
GTACCCTACCGTTGGTTCACCGAAAAAGAGCAGTGGGATTTAGAAGAGGAAGAATCCTATGGTTTTGCTAGCCAGTTTGG
TGAGCTCGATGGCAAGGCAATAAAGATGCTGCCTTTGCTGGTGTTCTCGTCACAAACTGGGCAATGGGAGGACAAGAAGT
TTGCACCTGGGCGTTGCGCCCCAGGGCACATCTATGACGTGGTGACCACACCGCGTGGTTTCAAAAGGTTGGCATGGTCA
GCCGAGTACTGGCATGGATCGCTCTATGTGCATTGTCACAGTGGCGTCCTCTTGATCTTGCGTTGCTCAGAAGGGGTGTA
CGACATGGTCCAATTGCCAGGGGATTTGGCTCCGTATGATGACGAAGAGGATAAGGAGTCATGGGACCTTCCCAAGAGAT
CTGTTTTAGCGAGCTATGAGAGAGGGGTTTGCTATGTGACCCTCAACAAGTACCATCTCATGGTATGGGCACTGATAGAA
TCTACCGACGGTCAACTTGAGTGGACGTTGGCACACGAGGCCGACCTTAGACCGCATAGTCGTAGTATGGAATCTTTGAA
GAGAAAAGCAAGACCGAGGATGAAAATGGAATGGGAGCTGGTCGAAACGGATGAAAAACTAATTAGCTTGTCAGGACAAA
GCAGTAATGAGGAAATTGATGAGGATCATGATACTGGAGAGGAAGAATACAACGAAGGCGAGGTCGAAGAAGTGGAGAGG
AGTAGTGAGGAAGATGACAAGAATGATGATATTGGAGAAGAAAGTAACGATGACGAGGCCGAAGAACTTGGGAGCGGAGA
GGGCTCCGTGTACTCATGGAACTCGGACGAGCACAACTTCATCGACTTAGACGAAAGTGATACCACCGACTTAGAGGGAT
ACTTGTTCAGGATCATTGGTTTACATCCGCACAAGGATGTGCTTCTCCTAAATTTTTGCTCATGTGTGGTGGCATATCAT
CTTGGTACCTCGAGAATGCAGTACTTAGGTCACATTTTTCCTAAACAACTGACACAGAATGCTGCAAACGTCCGTTGTGC
CTTCCCTTATCGCCCTTGCTACTTCGATGCGCTCCCTCAGAGGAAGTCCCAACCATCTTAAAAACACCGCAATGTAGTTT
CAGACTCACCCTATCCTTATTATGTTTTCTAGCATCTAAATGTATTTTTCGCAGCTCTCGTGCATGTTGTCGACA-----
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-----------------------------------
>chr5A_1_TraesCS5A01G527900
CCGTTCAGTAACCGGGCCGTTCGCCCGGAATGGTACACATGATTTCTTATGGCTCATGCAGCGGGGAGAGTAAACTCGTT
CCGTTCCCTGTCACTGACCTGCCGGGCCCCACGGAAGGCCATGCAATTCTAGACGTTAATCCACGCCCATCTCCTCACAA
AGCATCAGGAAGCGACATCCGGCTTGTGCTAAAAAAAAAGGAAGAGACATCCGGCCCAGCAAAGTGAAACAAGTATAGAT
GGCCGGCGGTGCGGCGGTGGCACCGCCGCGTCGGCACTCTCGAGCCCATGGAGGGCGCTGCTGCAGCGAGCGTGCACCTA
CTTTGAAATACAGAATCAGTTATACATAAATTGGTTAAAACATTGCAGATTCATATGCGCCTATTGTGTTGCTTAATACC
TGAAAAGTAATCAGAGATTGATGTTCACAAGAACCCGAGAAGGAGATGAGTCCAGTGATTGGATGGCCCAAAGTGTTAGC
CCATAACGACCTTTTTGTTATAAAGGGTGAGCATAAAAGTGTTATTAGCTACC---ACTAATTTTATTTGGGGATTTTCC
ATTGCAAGGAACTGTCTTCATTCCTCAACATCTTTTCCAGCTTGTCAGAATGCATCTTTGGCAGAGCACCCTCGCACTAG
AGAG----------TGAGCTGTGTGCTTTACCTGCACTACAGTCCTTTGTGA-------TACATGATACTCTTAATTAAT
ATTGTA---------------------------------GAATGGTTCAAAGGCCAGGAAATACATCGAATCAATCTACA
TTTATGGCTGTAATCACAATAATATCACGCACACAAAATAGAAGATCACAAGGAATTGTACAAGTATTAAAGTTTCTCAC
TGGTGGTTACAGGAGTAGTTTTCTGAATTTAGATACTGCAATATATACTGGAGTAAATCTGGTTATTTTGTTCGGCAGCC
GTGAGATACAAGGAAGCTATCTTCTAGGTGATATACTTTGATTGCAGCAAATTAATGGTGATATTTTTCTTTCAGGGAAG
ATTAATGGTGAGATTATATATTGCATTTTTCGTCTAA--ATATCTCCACCATAACGTCTAAAGATCGCATTTTTCGTTTT
CTTTCCCTTGGTTCCCACATCGTATTTTGTGTGTGGTGGCCGGCGAGATGGACGCCAATGACGATGCCAATGGTTTCTGC
TTCCCCTATGACGTGCTCCTCGAGATCCTCCATCGCCTCCCAGCTCGCGCCCTCGCTGACTCCCGGCGCGTCTGCCACGC
GTGGCGCACCATCATCGACGCCCACAGCCTCCTCCTTCCCCACGCCTTCCCGCGCGAGTTCCCTGGCATCTACACTATCA
TCTACTATGGATTCACATCTGACTCTGCCTTGTTCGTCCGGCCTATGTCACAGTCGGATGAGCCTGGCTATCGACGCCCT
TTCAGCTGGGGCGATTGGGGCATGTGCACACAACAACACTGCAATGGCCTCTTCCTTGTCCGGGATAGTTACCACCTGGA
ATATGCCAATGAAATGTACGCGTGCAACCCAACGACAGTACGGGCTGCCCATCTGCCAAGGCCTCCGACACCGTGGCCAT
GCAATGTTGAGGGAATGTTTCTCGCCTTCGACCCGGCCATGTCACGGTATCACAAGGTATTCCTCCTTCCTTCAAAGAAA
GTACCCTACCGTTGGTTCACCGAAAAAGAGCAGTGGGATTTAGAAGAGGAAGAATCCTATGGTTTTGCTAGCCAGTTTGG
TGAGCTCGATGGCAAGGCAATAAAGATGCTGCCTTTGCTGGTGTTCTCGTCACAAACTGGGCAATGGGAGGACAAGAAGT
TTGCACCTGGGCGTTGCGCCCCAGGGCACATCTATGACGTGGTGACCACACCGCGTGGTTTCAAAAGGTTGGCATGGTCA
GCCGAGTACTGGCATGGATCGCTCTATGTGCATTGTCACAGTGGCGTCCTCTTGATCTTGCGTTGCTCAGAAGGGGTGTA
CGACATGGTCCAATTGCCAGGGGATTTGGCTCCGTATGATGACGAAGAGGATAAGGAGTCATGGGACCTTCCCAAGAGAT
CTGTTTTAGCGAGCTATGAGAGAGGGGTTTGCTATGTGACCCTCAACAAGTACCATCTCATGGTATGGGCACTGATAGAA
TCTACCGACGGTCAACTTGAGTGGACGTTGGCACACGAGGCCGACCTTAGACCGCATAGTCGTAGTATGGAATCTTTGAA
GAGAAAAGCAAGACCGAGGATGAAAATGGAATGGGAGCTGGTCGAAACGGATGAAAAACTAATTAGCTTGTCAGGACAAA
GCAGTAATGAGGAAATTGATGAGGATCATGATACTGGAGAGGAAGAATACAACGAAGGCGAGGTCGAAGAAGTGGAGAGG
AGTAGTGAGGAAGATGACAAGAATGATGATATTGGAGAAGAAAGTAACGATGACGAGGCCGAAGAACTTGGGAGCGGAGA
GGGCTCCGTGTACTCATGGAACTCGGACGAGCACAACTTCATCGACTTAGACGAAAGTGATACCACCGACTTAGAGGGAT
ACTTGTTCAGGATCATTGGTTTACATCCGCACAAGGATGTGCTTCTCCTAAATTTTTGCTCATGTGTGGTGGCATATCAT
CTTGGTACCTCGAGAATGCAGTACTTAGGTCACATTTTTCCTAAACAACTGACACAGAATGCTGCAAACGTCCGTTGTGC
CTTCCCTTATCGCCCTTGCTACTTCGATGCGCTCCCTCAGAGGAAGTCCCAACCATCTTAAAAACACCGCAATGTAGTTT
CAGACTCACCCTATCCTTATTATGTTTTCTAGCATCTAAATGTATTTTTCGCAGCTCTCGTGCATGTTGTCGACAATAAA
TAAATATGTTTCATAGCATTTGAGGAATCCTTATAAGGGAGATGATGTGCTATGTGCTTTATCTGAATCATAGTCATTTG
TAAACATGCAAGATGGCTCTTATTTACATGTATGCTTACAGTTGAAGGTCTACCTTCTTTTCTTATTTTTTTCTTCTATG
CTTACTTAGCTAGCCTTGTCTTACCAGATGATTCAAAGCCCGGTATATACGTTGATCTAGACCAGAGAAATGAGATATAC
AATAAATAAATAAATCTAGATCATAACTGCAAGTATATAAACTGCACAATGACAATTTGTATGTATAGTGCATCAACGAA
GTGCTTCTTGATTTTCACTGATTCAGTAACTAATTTCGATGTGTGGTTTAGTTGTGATCAAATAGACCAGTGGGATCTAG
AATTGGCCCCTCTGACGAGGTGCGCTCAGGAATTAGCACTATTATTTATCATTATTTCAAGCATCACAAGTGCCTAATAA
GTTCCTGTAAAGAAAGTCCTGATTTTGGATATCCCTGCAGATATGCTGGTGCTACACCGATTCGAGGGAACAGTTTTGTA
TCAGCGACATTACAGATGTGATACATGGTTAATGCTTAGTAGAATATGTCTTGTGCTCTATTCTGCATAGTGGAGATGTA
CTCTTTTCATGGAACACGCATGAGCTTTGTGTGTTGATTCATTAAGAAGGGGAGAGCAATACAACAAGAGTTAGGTTACC
TATAAGAGCCGGTTGTCTCGCTCAACTCTACTATTCTACCCGCATAACTCTTACGATCCCAAGCGAGCAGCCAAAGCTTC
CAACCTACATAAGTTCTAGCAGAAGCTGAAGTGTCCTTCCAAATAGAGAAAATAAGTAGTGTGAAGGTTGTGTTTGAAAT
GGAAGGATACTCTTGGTTTATTGAAAAGCAACAAGAGGCGGATGCTTACACTAGGCCAGGAGGGATATAATTAAGCCCAA
TGATTACAAATATAATCAGATGCGCATGGGAAACA
>chr4D_398
--------------------------------------------------------------------------------
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-----------------------------------------------------------------------------ACC
TGAAAAGTAATCAGAGATTGATGTTCACAAGAACCCAGGAAGGAGATGAGTCCGGTGATTGGATGGCCAAAAAAGTTAGC
CCATAACAATC-TTTTGTTATAGAGGGTGAACATAAAGGCGTTATTAGCTAGTACAACTGATTTTATTTGTGGATTTTCC
ACTGCAAGGAACTGCTTTCATTCCTCAATATATTTTCTAGCCTGTCAGAATGCATGTTTGGCAGAGCACCCATGGATTAC
TTGTACTGGAGAGTTGAGCTGTGTGCTTTTCCTGCATTACAATCCTCTGTGACTGAACATACAGGATATCTCTAATTAAT
ATTGCAATGTGGAATTTCGTTGGTGAGCCGTATATCGTGGAATGGTTCAAAGGCCAGGAAATACATCGAATCAATCTACA
TTTATGGCTGTGATTACAATAATATCACGCACACAAAATAGAAGATCACAAGGAATTGTACAAGTATTGAGGTTTCTCAC
TGGTGGTTACAGGAGTAGTTTTGTAAATTTAGAACCTGCGATGTACGCTGGAGTAAATCTCACTGTGAGATACG------
------TACGAGGAAGCTATCTTCTACGTGATGTACTTGGATTACAACAAATTAATGGTGACCTTCTTCTTTCAGGGAAG
ATCAATGGTGAGATTATATATCTCTGTGACTCTACAAACATGTATCCACCATAACGTCCAAAGATCACATTTCA--TTTT
CTTTCCCTTGGTTCCCATATCGCGTTTTGTGCGTCGTGGCCGGCGAGATGGGCGCCAAAGACGATGCCAACGGTACCTGC
TTCCCCTACGACGTGCTCGTCGACATCCGCC-------------------------------------------------
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-----------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---
------------------------------------SS---------------S--------------S---SS------
-------S-S-S----------S-------S------S-S-----------SS------S----------S---------
-S------------SS------------S--S-----S---S-------------S---------------SS-S-S--S
SSSS-------------------------S------S----S----S----------------S----SSSS--------
----S---------------------------------------------------------------------------
-----------S--S-----------------------------------------------------S-S---------
----------------------S-S--------SS----S--S--SS-------------SSS-S-SSSS-S--SSSSSS
SSSSSS---S----------------S-----S-----S----S--S--------------SS--S--------------
--S------------------SS-SS-SSSSS-SS------S-S--------------S-------S-----SSSS----
-----------------S----SS-------S--S----------------S------S-----------S---SS----
--------S---------S----S----S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_92
------------------------------------------------------------------------AACTCGTT
CCGTTCCCTGTC--------------------------------------------------------------------
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>reverse_1833
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------------------------------------------------------------------------CAAGAAGT
TTGCACCTGGGC--------------------------------------------------------------------
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-----------------------------------
>forward_248
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--------------------------------------------------------------------ACAAGTATAGAT
GGCCGGCG------------------------------------------------------------------------
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-----------------------------------
>reverse_2268
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---------------------------GGAATGGGAGCTGGTCGAAA---------------------------------
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-----------------------------------
>forward_2185
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-----CGACGGTCAACTTGAGTGGA-------------------------------------------------------
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-----------------------------------
>reverse_3527
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------TCATGGAACACGCATGAGCT------------------------------------------------------
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-----------------------------------
