>input_sequence_42905
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--------------------------------------------AGGGCGGATACTAGTCCAGTAGCTAGCCGGTGAGAG
AGAGGGGTG----CGATCTTGTCCAACGAGGGAGATGGTGTCCCGCAACGACACTGGATTGGATAGCGTACTGCATAGCT
TGCAATCTACCACTGATCCTCATAGGAAAATAGATCGCAGCTTCATCAGCGGAGGCAAGCCGATTATCCAGGTGGTCCCG
GCGTTCCTCCGCAGCATCAAAAACGTGGAGCGGCTCTTCTCGCCGGACATCATCGCCATCGGCCCATACCACCGCGACGA
GCCGCGTCTGCAAAGCATGGAAGAGATCAAGAAGATGGCAGCCAACGAGTTCTGCTGCAGCTCCACCGCTCACCAGGTCC
GGGATTTCTATCTCAATGTTCAGGAGGTGGCCGAGCAAGCTCGGGAATTTTATGCCCACGACGTCGGCATG---AACGAC
AACGACTTCACGGCGATGCTCTTCTTCGACGGCTGCTTCCTCCTGCAGTTCATGACCATGGTGGCGCTCGACCGTGGCCC
GCAGAAACTCTGGAAGATGCCGCAGCTGAGCGAGAACTGGATGCAGCGCATCTCGCGCGACATCCTCCTGGTGGAGAACC
AGATCCCCTGGGTGGTGCTGGAGGCCCTGATGCGCCTCAAGCACGTCCTCGTCGACCGCTACATCGCCGACACCATCAGC
AACTTCGACGTGAAGGGAGCGAAGCCGCAGGTGGACTGCGAGGGAGCCGACAAGTACCAGCCGTTCCACCTCCTCGACCT
TGTTCGGCACCGCCAGATCGGCCCCTTCCGGAGCCGAATGGTGGCCGTCGCCCACGAGGCCGAGGCCCCGCGGCCGATCC
TCAACATCTCCTCGGCCCTGGAGCTCGCCGAGGTCGGCGTCCACATCACCGCGGGGAAGACGGCCCGCCTCTCCGACATG
GCCGTGGGGAAGAAGAACCCCCTCTTCGGCAACCTCTGGCTCCCGCCCGTGTACCTCAGCGAGCTGACCATGTCGCTGCT
GATCAACATGGCGGCGTTCGAGATGCTGCAG------GGGGGCACGTCGGACGCGGACTACGGCGCGAGCTCGTACATGC
AGATCATGGCGGTGCTGATGAACCGCGAGGACGACGTCCGGGAGCTGCGCGCCAAGCACATACTGTACCCGGTGTTCAGT
GATCAGGAGACGCTCGGCTTCTTCAAGTCCGTCTGCCCGTACCTACGGAAGGGAGGACAGTATGATCGCGTCCTGCAGCG
GCTCAGCAATTACCAGCAGGACCGCATGGTGAGGATCACCCTGCACAAGTTCGTTTACAACAACCTCAAGTACCTCCTCA
CTTCTGGGTCGGCCTTTGGCTTGCTCATACCCATCCTCAGGGCCGTCCTCTCCCTCAAGGACGCCAACCGGAGCGCTCCG
GGTGCTCCACCGCGCGCACTCTGACAGAGGTTGTAGCTGGTG--CATTCAGTGCTAGATGTAGTGGTAGTAACCATTCTT
CTTG---TTGTCTTGGTCGTCTGTATCTTCGTCTTGTTTTTTTCTTTTTTAGAAAAGGAGGATATATCCCCGATCTCTGC
ATCTGGACGATGTATCTTCGTCTTGTAAGTTGCTTCGTGCAGCGCTTGGTGCTCACACAGTCAACTAATGTACGTTTTCC
TTTTGTTTTGCTGAGCTAGGTCTTTGTACTCCTATGTTAAGCCTTACTGTTGAAACACAGACAACAGATCCTGCAAACTC
AATTTTATTCAGTTTTAGTTTTCTTTGACAGCGGAAAGCAGCCTCATCGATTGGAATAGTTATTAGAGAGAACAGCTTGT
GTTAGATCGATTCGCAAAAAAAAGGGCTTGATCCTAATTAAA--------------------------------------
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-----------------------------------------------
>chr3A_1_TraesCS3A01G497000
TTTGTTGCCTTATACGCCCGCGGGCGTGTTCCGTCGTGTCCGCTGGCAGTGCCCGGGCATAAGGTCATTTGCCTCCTCCA
CAACCACAAACCCTCAAAGTGGATACTCTATTTCATACAAGCACATGCATCCTACTT---AGATAATGGAAATATCATG-
AAAATTATGCAATTCGGACATCGAACATGCATTTAGTTCATCCAAAAGGGTCGGCGAAGTTCAAATTCAACCTAAAACGA
AGTTAAAACAACTAAAATATTAACATAGCTAGGGTGCCGGCCGGAGTTCACCACTTCTTGGGCAGGCCATACCCTTGAGG
TCGGCGGGGCAGTGGTCCATCAACTCCATGTAGGCGTCTGCAGCGGGAGGATTGTTGTCGTCGCCCGTGCTGGTACCGCT
CTCCGACGACGAGTAGATGTAGTCGGAGAGGCGGAGGAGGAGGTGTCGCTGCTCCTTCGCGTGGTGGGCCACCTTTTCCT
GGGCGGACTCCTTCTCCCTCGCGAGGTGCTTGGACGCCTCGAGCCTGATCCGGAGTGCCTTCGTGTTCTTCCGTCAGAAG
CGCCGCGCGTCAAACTCCGTTGTGGTCAGCAAGCATCCAAGCGTGCCCATATCTGCCCCAAATATGGCTTGGACATTAGG
TTGCCGGTCAGTCGAGTCGTCTGGGCCGGATATATATGGGGCGCCCGGTTAGGTGCCGTTTTTGCGTCCGGTCACTGGCC
AGGCAGCCTGTCCGGACGTTTTGGGACGGATTTCAGGGCTTCGGTTGTACTCCCTCCGTTTGTTTTTATAAGGCGTTCAG
ACAACTTGCTTTGTGCTGTTTTTGAACAGTGTCTGAAAGTCTAAAACGTCTTATAAAAACAAACAGAGGTAGTAGATGCT
ATTATTCCATCCATAATTGTATGATGCTGTTACATGTTTACATGTTGAAATAAATAAGTTAGTGCGAGGCAGCAAGTGAA
CACTTGCGTGATGCTTTGAAAGGCGGGAAGGGGAAGAATAGAAGAGGGCGGATACTAGTCCAGTAGCTAGCCGGTGAGAG
AGAGGGGTG----CGATCTTGTCCAACGAGGGAGATGGTGTCCCGCAACGACACTGGATTGGATAGCGTACTGCATAGCT
TGCAATCTACCACTGATCCTCATAGGAAAATAGATCGCAGCTTCATCAGCGGAGGCAAGCCGATTATCCAGGTGGTCCCG
GCGTTCCTCCGCAGCATCAAAAACGTGGAGCGGCTCTTCTCGCCGGACATCATCGCCATCGGCCCATACCACCGCGACGA
GCCGCGTCTGCAAAGCATGGAAGAGATCAAGAAGATGGCAGCCAACGAGTTCTGCTGCAGCTCCACCGCTCACCAGGTCC
GGGATTTCTATCTCAATGTTCAGGAGGTGGCCGAGCAAGCTCGGGAATTTTATGCCCACGACGTCGGCATG---AACGAC
AACGACTTCACGGCGATGCTCTTCTTCGACGGCTGCTTCCTCCTGCAGTTCATGACCATGGTGGCGCTCGACCGTGGCCC
GCAGAAACTCTGGAAGATGCCGCAGCTGAGCGAGAACTGGATGCAGCGCATCTCGCGCGACATCCTCCTGGTGGAGAACC
AGATCCCCTGGGTGGTGCTGGAGGCCCTGATGCGCCTCAAGCACGTCCTCGTCGACCGCTACATCGCCGACACCATCAGC
AACTTCGACGTGAAGGGAGCGAAGCCGCAGGTGGACTGCGAGGGAGCCGACAAGTACCAGCCGTTCCACCTCCTCGACCT
TGTTCGGCACCGCCAGATCGGCCCCTTCCGGAGCCGAATGGTGGCCGTCGCCCACGAGGCCGAGGCCCCGCGGCCGATCC
TCAACATCTCCTCGGCCCTGGAGCTCGCCGAGGTCGGCGTCCACATCACCGCGGGGAAGACGGCCCGCCTCTCCGACATG
GCCGTGGGGAAGAAGAACCCCCTCTTCGGCAACCTCTGGCTCCCGCCCGTGTACCTCAGCGAGCTGACCATGTCGCTGCT
GATCAACATGGCGGCGTTCGAGATGCTGCAG------GGGGGCACGTCGGACGCGGACTACGGCGCGAGCTCGTACATGC
AGATCATGGCGGTGCTGATGAACCGCGAGGACGACGTCCGGGAGCTGCGCGCCAAGCACATACTGTACCCGGTGTTCAGT
GATCAGGAGACGCTCGGCTTCTTCAAGTCCGTCTGCCCGTACCTACGGAAGGGAGGACAGTATGATCGCGTCCTGCAGCG
GCTCAGCAATTACCAGCAGGACCGCATGGTGAGGATCACCCTGCACAAGTTCGTTTACAACAACCTCAAGTACCTCCTCA
CTTCTGGGTCGGCCTTTGGCTTGCTCATACCCATCCTCAGGGCCGTCCTCTCCCTCAAGGACGCCAACCGGAGCGCTCCG
GGTGCTCCACCGCGCGCACTCTGACAGAGGTTGTAGCTGGTG--CATTCAGTGCTAGATGTAGTGGTAGTAACCATTCTT
CTTG---TTGTCTTGGTCGTCTGTATCTTCGTCTTGTTTTTTTCTTTTTTAGAAAAGGAGGATATATCCCCGATCTCTGC
ATCTGGACGATGTATCTTCGTCTTGTAAGTTGCTTCGTGCAGCGCTTGGTGCTCACACAGTCAACTAATGTACGTTTTCC
TTTTGTTTTGCTGAGCTAGGTCTTTGTACTCCTATGTTAAGCCTTACTGTTGAAACACAGACAACAGATCCTGCAAACTC
AATTTTATTCAGTTTTAGTTTTCTTTGACAGCGGAAAGCAGCCTCATCGATTGGAATAGTTATTAGAGAGAACAGCTTGT
GTTAGATCGATTCGCAAAAAAAAGGGCTTGATCCTAATTAAATTGTAGGAATTTCAGTACGATTTTTGCAGGAATCTAAT
ACTTTGAGATTATTCTTTTTTTTAGATTATTCTTAAGGGTTGCCTTAATTCCAAAGAATGGTGGCACTCAAATCATGCGG
ATTGGATTCATATGCCTCAGTCCCATAGGAATGTGAGCATCCAACACAACATCTTTTTAAAACTTGGTCGCACAGGATCG
AGGGAGCCTTTCCCGTGTTCCATTCAAACGACTACCCCGGCGGTTTCTTGTGTTTTGCCTACTAGTAAAAATACACGTGC
AACGCGCGTCTTGACAAATATAAATATTAGTAACCAGTATAAATGTTAATAACTACTTCCCCTGTCTTAAAATGTAGAAC
TT-TTTTGTGCTTAATCTAGACCAAAAAT-TGACTTATATTTTGAGCAAG--AGAGTACTATATTATTTGATGTACATTT
TC--TAAAAA-TTTAATATTTCTTAACTACAATAACAATCGAGCACACAATATTAAAGCATT----------ATATATCC
CACGCACTAAAATATTAGGAATATCTTTCAACAAATTTGTTTGAAACAAATGCCCCACTAAATATTTTCAGGCATTGTT-
--------------------GAAACCCTACCGGTGCAATGTTCATATCATCATATATCATCTAGTCCAACACATGGATAA
AATCGAGCTGTCCATTTGCAGCAGCAAGGTGGACCACCAGTTCCTGGACATGCTTATGCTTCTTTAGATCCAGATTCAAT
CAAAAAGAGAAGTTTTCCACTGTACATGTAATAGGGCAGAGTGTCAAAAGTTTAGAAATGGGGATAACAATCATAATCAG
AAGAAACTTAAAAGAAGATAATCAGATTG-TTTTGTTTTACACATTGGTGACATTTATTTGGGATTAATTTAGCACAAGA
GAAA----TTGCTT-TAAGATGATGGGTGGAAATTAATCTAAACATATAAAATCAAGAGGCAGCAAGAGGGCAATCCAAA
TATCTTTAGAATATGTCAGTGAAA-TTGCAACTACTTATAACGGACT
>chr1D_1
TTTGCTGCCCTATATGCCTGCGAGTGCGTCCGCGCGTGTCCACTGGAAGTGCCGATGTAGAAGGCAATTTGCCTCCTCCA
CAACCAAAAGCCCTAAAAGCGGATACCCTATTTCATAAAAACCCACGCATACTACTACACATATCATAGAAATAGCACAA
AAAACTACGCAATTCGCATGCCGTACATGCATTTAGTTCATCCAAAAGGGTCTACGGGGTTCAAATTCAACCTAAAACCA
G-----AACAACTAAAATATAAACATAGCTAA--TGTCGACCGGAGTTGACTA---------------------------
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--------------------CTCCTTGGTCGGCCCCTTTCCCTTGCGGTCGGCG--------------------------
------------------------------------------------------GCGCGACA------------------
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-GTCCATATCCTCCATGTAGGCATCTGGCGCGGGAGAATCGTGGCTGTCGTCCGTGGT----------------------
-------------------------------------------------------------GGTGCCGCTCTCAGATGAG
GAGGAGATGTAGCTAGAGA-------------------------------------------------------------
---------GGCGGCGGAGGAGGCGCTGCTACTCCTTGGCGTGGCGG------GCGGCCTTGGCGGCAGTGAACTCCCTC
TCCC----------------------------------------------------------------------------
--CCGTGAGGAGCTCGGACGCCTCAAGCCCGAGG----------------------------------------------
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--------------------------------------------------------------------CGGAGCGCCTTC
GCGTTCT-------------------------------------------------------------------------
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-------------------------------TTCGCCGGAGGCTCCCCGCGATAGACTCCATCGTGGTCAGC--------
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>chr3D_938
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-------------------------------------------------------------GTGCGTGGCAGCATGTAAA
CACTTGCGTGATGCTTTGAAAGGCGGCAAGGGGAAGAATAGAAGAGAGCGGATACTAGGCCAGTAGCTAGCTGGTGAGAG
AGAGGAGTACGTACGATCTTGGTCAACGAGGGAGATGGTGTCCCGCAACGACACTGGATTGGATAGCGTACTGCATAGCT
TGCAATCTACCACTGATCCTCATAGGAAAATAGATCGCAGCTTCATCAGCGGAGGCAAGCCGAGTATCCAGGTGGTCCCG
GCGTTCCTCCGCGGCATCAAGAACGTGGAGCGGCTCTTCTCGCCGGACATCATCGCCATCGGCCCATACCACCGCGACGA
GCCGCGTCTGCAAAGCATGGAAGACATCAAGAAGATGGCAGCCAACGAGTTCTGCTGCAGCTCCACCGCTCACCAGGTCC
GGGATTTCTATCTCAATGTTCAGGAGGTGGCCGAGCAAGCTCGGGAATCTTATGCCCACGACGTCCGCTTG---AACGAC
GACGACTTCACGGCGATGCTCTTCTTCGACGGCTGCTTCCTTCTGCAGTTCATGACCATGGTGGCGCTCGACCGTGGCCC
GCAGAAACTCTGGAAGATGCCGCAGCTGAGCGAGAACTGGATGCAGCGCATCTCGCGCGACATCCTCCTGGTGGAGAACC
AGATCCCCTGGGTGGTGCTGGAGGCCCTGATGCGCCTCAAGCACGTCCTCGTCGACCGCTACATCGCCGACACCATCAGC
AACTTCGACGTCAAGGGGGCGAAGCCGCAGGTGGACTGCGAGGGAGCCGACAGGTACCAGCCGTTCCACCTCCTCGACCT
TGTTCGGCACCGCCAGATCGGCCCCTTCCGGAGCCGAATGGTGGCCGTCGCCGACGAGGCCGAGGCCCCACGGCCGATCC
TAAACATCTCCTCGGCCCTGGAGCTCGCCGAGGTCGGCGTCCACATCACCGCCGGGAAGACGGCGCGCCTCTCCGACATG
GGCGTGGGGAAGAAGAACCCCCTCTTCGGCAACCTCTGGCTCCCGCCCGTGTACCTCAGCGAGCTGACCATGTCGCTGCT
GATCAACATGGCGGCGTTCGAGATGCTGCAG------GGGGGCACGTCGGACGCGGACTACGGCGCGAGCTCGTACATGC
AGATCATGGCGGTGCTGATGAACCGCGAGGACGACGTCCGGGAGCTGCGCGCCAAGCGCATCCTGTACCCGGTGTTCAGC
GACCAGGAGACGCTCGACTTCTTCAAGTCCGTCTGCCCCTACCTCCAGTACGGGAGGCAGTACGACCGCGTCCTGCAGCG
GCTCAGCCACTACCAGCAGGACCGCACGGTGAGGGTCGCCCTGCACAAGTTCGTCTACAACAACCTCAAGTACCTCCTCA
CTTCCGGTTCGGCCTTCGGCTTGCTCATACCCATCCTCAGAGCTGTCCTCTCACTCAAGGACACCAACCGGAGCGCCCCG
GGTGCTCCACCGCGCGCACTCTGACAGAGGTAGTAGCTGGTGTGCATTCAGTGCTAGATGTAGTGGTAGTAACCATTCTT
CTTGTTGTCGTCGTCGTCGTCTGTTTCTTCACCTGCATGTAA--------------------------------------
--------------------------AAGTTGCTTAGTGCAGCGCTTGGTGCTCACACAGTCATGTAAA-----TTTTCC
CTTTGTTTTGCTGAGCTAGGTCTTTGTACTCCTGTGTTAAGCCTTACTGTTGGAACACAG--AACAGATCCTGCAAACTC
AATTTGATTCAGTTTTAGTTTTCTTTGACAGCGGAAAACAGCCTCATCGATTG------------GAGAGAACAGCTTGT
GTTAGATC-ATTCGCAAAAAAAAA----------------------AGGAATTTCAGTACGATTTTTGCAGGAATCTAAT
ACTTTG-----------------AGATTATTCTTAAGGGTTGCCTTAATTCCAAAGAATGGTGGCACTCAAATCATGCGG
ATTGGATTCATATGCCT-AGTCCCATAGGAATGTG--CATCCAACACAACATCTTTTTAAGACTTGGTCGCGCAGGATCG
AGGGAGCTTTTCCGGTGTTCCATTCAAACGACTACCCCCACGGTTTCTTGTGTTTTGCCTA-------------------
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>chr3D_1150
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-------------------------------------CAGCTTCGACAGCGGAGGCAAGCCGCGTATCCAGAAGGTCCCG
GCCTTCCTCCGTAGCATCCAGAACGCCGACCGGCTCTACTCTCCGGACATCATCGCCATCGGCCCGTGCCACCGCGGCAA
GGAGCAACTGCAAGGCATGGAGGACATCAAGAAGATGGCTGCGATGGAATTCTGCTGCACCACTCAG---CACCAGATCC
GGGCTTTCTACCGTAATGTCCGGGAGGTGGTCGTCCAAGCCCGGGAGTCCTACGCCGAAGATCTCAGCGCCTACAACGAC
GACCAGTTCACGGAGATGATGTTCTACGACGGCTGCTTCCTCCTCCAGTTCATGACGATGGTGGCGCTGGACCGCGGCCC
GCCGCTCCAGTGGAAGATGCCCAAGCTCAGCGAGAACTGGGTGCGGCGCATCTCGCGCGACATCCTGCTCGTGGAGAACC
AGGTCCCGTGGGTGGTGCTGGAGGCCCTGATGCGGCTCAAGCACGTCCTCGTCGACCGCTACATCGCGGACGCCATCCGC
AACTTCGACGTGCAGTGGGCGAAGCCGCAGATGGACTTCGAGGGCGCCGACAAGTACAAGCCGTTCCACCTCCTCGACCT
GGTCCGCCACCGCCAGCTCGGCCCCTTGACCAAAGCCAAGCT---------------GGACGAGGCCCCGAGGCCGATGC
TCAACATCTGCTCCGCCCTGGAGCTCGCCGAGGTCGGCATCAAGCTCAGCGCCAGCAAGACGGCGCGGTTCGGCGACATC
GGCGTGGGCAAGAG---CCCCATCTTCGGGAAGCTCCGGCTCCCGCCGGTGTACCTCGGCGAGCTCACCATGTGCTGGCT
GACCAACATGGCGGCGTTCGAGATGCTGCAG------GGCGGGACGT------CGGACTACGGCGTCAGCTCGTACGTGC
AGATCATGTCGGTGCTCATGAACCGCGAGGACGACGTGCGGGAGCTCCGCACCAAGCGCATTCTGTACCCGGTGCTCAGC
GACCTGGAGACGCTCAACTTCTTCAAGTCCATCTCCCCGTTTCTGCCGTATGGGAGCCAGTATTTCCGCATCCTGCAGCA
GCTCAGCGATTACCACCAGGACCGGAAGGCGAGGGTCACTCTGCACAAGCTCTTGTACAACAACCTCAAGTACATCCTTA
CGGCCGGTTCCGCCCTCGGCTTTCTCATTCCTATCCTTAGAGGCATCCTCACCCTC------------------------
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>chr6D_3079
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------------------------------------------------------------ACTAGTAAAAGTGCACGTGC
AACGCACGTCTTGACAAATAAAAATGTTAATAACCACTATAAATGTTAATAACTACTCCCT--GTCTTCAAATGTAGGAC
GACTTTTGGTCTCAATCTAGACAAAAAAAATGACTCGTATATTGAGACAGAAAGAGTACTATATTATTTGATGTACATTT
TCACTAAAATTTTGAATATTTGTTAACTACAATAACAATTGAGCACACAATATTAAAGCGGTACTGTCTAAAATATATCC
TACGAACTAAAATATTAGGAATATCTTTCTACAAATTTGTTTGAAACAAATGCTCCAATAAATATTTTCAGCCATTGTTT
AGATCATATATAGTGTTGCGGAAACCCTACCGGTGCAAGGTTCAAATCATCATATATCATCTAGTCCAACACATGGATAA
AATCGGGCAGTCCATTTGTAGCAGCAAGATGAACCACCAGTTCCTGTACATGCTTATGCTTCTTTAGATCCAGATTCAAT
CAGAAAGAGAAGTCTTCCACTGTACATGTAATAGGGCAGAGTCTCAAAAGTTTAGAAATGGGGATAACGATGATAATCTG
AAGAAACCTAAATGAACATAATCAGATTG-TTTTGTTTTACACATTGGTAACATTTGTTTGGGATTAATTTAGCACCAGA
GAAA----TTGCTT-TAACATGATGGGTGGACATTACTCTAAACATAGAAA-----------------------------
-----------------------------------------------
>chr4A_3129
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------------------------------TAACAAATATAAATGTTAATAACTACTCCCTCTGTCTTAAAATGTATCAC
ATTTTTTTGTATCAATCTAGACCAAAAAAGT--CTTATATTTTGAGACAGAGGGAGTACTATATTATTTGATGTACATTT
TC--TAAAA-TTTGAGTAATTGTTAACTACAATAACAATCGAGCACAGAATATTAAAGCACT----------ATATATCC
CACGCACTAAAATATTA-GAATATCTTTCAACAAATTTGTTTGAAACAAATGCTCCAACAAATACTTTCAGGCATTGTTT
AGATCATACATAGTGTTGCTGAAACCCTACTGGTGCAATGTTCAAATCATCATAGATCATCTAGTCCAACACATGGATAA
AACCGGGCTGTCCATTTGTAGCAGCAAGGTGGACCACCAGTTCCTGTACATGCTTATGCCTCTTTAGATCCAGATTCAAT
CAAAAAGAGAAGTCTTCCACTCTACATGTAATAGGGCAGAGTGTAAAATTTTTAGAAATGCGGATAACAATCATAACCAG
AAGAAACTTAGAAGAAGATAATTGGATTG-TTTTGTTTTAAA-ATTGGTAACATTTATTTGGTATTTATTTAGCACCAGA
GAAA----TTGCTTTTAATGTGATGGGTGGACATTACTCTAAGCATATAAAATCAAGAGGCAGTAAGAGTGCAATCCAAA
TATCTTTAGAATATGTCAGTGAAAATTGCAACTACCTATAAC-----
>chr2B_3129
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------------------------------TAACAAATATAAATGTTAATAACTACTCCCTCTGTCTTAAAATGTATCAC
ATTTTTTTGTATCAATCTAGACCAAAAAAAT--CTTATATTTTGAGACAGAGGGAGTACTATATTATTTGATGTACATTT
TC--TAAAA-TTTGAGTAATTGTTAACTGCAATAACAATCGAGCACGGAATATTAAAGCACT----------ATATATCC
CACGCACTAAAATATTA-GAATATCTTTCAACAAATTTGTTTGAAACAAATGCTCCAACAAATACTTTCAGGCATTGTTT
AGATCATACATAGTGTTGCTGAAACCCTACTGGTGCAATGTTCAAATCATCATAGATCATCTAGTCCAACACATGGATAA
AACCGGGCTGTCCATTTGTAGCAGCAAGGTGGACCACCAGTTCCTGTACATGCTTATGCCTCTTTAGATCCAGATTCAAT
CAAAAAGAGAAGTCTTCCACTCTACATGTAATAGGGCAGAGTGTAAAAATTTTAGAAATGCGGATAACAATCATAACCAG
AAGAAACTTAGAAGAAGATAATTGGATTG-TTTTGTTTTAAA-ATTGGTAACATTTATTTGGTATTTATTTAGCACCAGA
GAAA----TTGCTTTTAATGTGATGGGTGGACATTACTCTAAGCATATAAAATCAAGAGGCAGTAAGAGTGCAATCCAAA
TATCTTTAGAATATGTCAGTGAAAATTGCAACTACCTATAAC-----
>chr1B_3179
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-TTTTTTGGGCTTAATCTAGACCAAAAAT-TGACTTATATTTTGAGCAGA--GGAGTACTGTATTATTTGATGTACATTT
TC--TAAAACTTTGAATATTTGTTAACTATAATAACAATCAAGCACACAATATTAAAGCAGT----------ATATATCC
CACGCACTAAAATATTAGGAATATCTTTCAACAAATTTGTTTGAAACAAATGCCTCAAAAATTATTTTCAGGCATTGTTT
AGATCATACATAGTGTTGCTGAAACCCTACCGGTGCAATGTTCAAATCATCATATATCATCTAGTCCAAAACATGAATAA
AATCGGGCTGTCCATTTGTAGAAGCAAGGTGGACCACCAGTTCCTGTACATGCTTATGCTTTTTTAGATCCAGATTCAAT
CAAAAAGAGAAGTTTTCCACTGTACATGTAATAGGGCAGAGTGGCAAAAGTTCAGAAATGGGGATAACAATCATAATCAA
AAGAAACTTAGAAGAAGATAATCAGATTG-TTTTGTTTTACACATTGGTGACATTTATATGGGATTACTTTAACACCAGA
GAAA----TTGCTT-TAAGATGATGAGTGGACATTACTCTAAACATATAAAATCAAGAGGCAGCAAGAGTGCAATCCAAA
TATCTTTAGAATATGTCAGTGAAAATTGCAAATACCTATAACCGACT
>chr3A_3314
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------------------------------------------------------------------------ATATATCA
AATGCACTAAAATATTAGAAATATC-TTCAACAAATTTGTTTGAAACAAATGCTCCAATAAATATTTTCAGCCATTGTTT
AGATCATACATAGTGTTGTGGAAACCGTACCGTTGCAAGGTTCAAATCATCAAATATCATCTAGTCCAACACATGGATAA
AATCGGGCAGTCCATTTGCAGCAGCAAGGTGGACCACCAATTCCTCTACATGCTTACTCTTCTTTAGATGCAGAGTCAAT
CAAAAAGAGAAGTCTTCCACTGTACATGTAACAGGGCAGGGTGTCAACAATCTACAAATAGGGATAACAATCATATTCAG
AAGAAACTTAAAAGAACATAGTCATTTTGT-TT--TTTTACACATTGGTGACATTT-TTTGGGATTGATTTAGCACCAGA
GAAA----TTGCTT-GAACATGATGGGTGGATATTACTCTAAGCATATAAAATCAAGAGGCAGCAAGAGTGCAATCCGAA
TACCATTAGAATATGTCAGTGAAAATTCCAACTACCTATAAC-----
>chr2B_3314
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------------------------------------------------------------------------ATATATCA
CATGCACTAAAAAATTTGAAATATCTTTCAACAAATTTGTTTGAAACAAATGCTCCAAGAAATATTTTCAGCCATTGTTT
AGATCATACCTAGTGTTGTGGAAACCCTACCGGTGTAAGGCTCAAATCATCAAATATCATCTAGTCCAACGCATGGATAA
AGTCAGGCTGTCCATTTGTAGCAGCAAGGTGGACCACCAGTTCCTCTACATGCTTATACTTCT-----------GTCAAT
CAAAAAGGGAAGTCTACCACTGTACATGTAATAGGGCAGAGTGTCAACGATCTAGAAATGGGGATAACGATCATATTCAG
AAGAAACTTAAAAGAACATAATCAGATTA-TTT--TTTTACACATTGGTAACATTTATTTGGGATTGATTTAGCACCAGA
GAAA----TT-----TAACATGATGGGTGGGCATTACTCTAAACATATAAAATCAAGAGGCAGCAAGAGTGCAATCCGAA
TATCTTTAGAATATATCAGTAAAAATTCCAACCATTTATAA------
>chr1D_3314
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------------------------------------------------------------------------ATATATCA
AATGCACTAAAATATTAGAAATATCTTTCAACAAATTTGTTTGAAACAAATGCTCCAATAAATATTTTCAGCCATTGTTT
AGATCATACATAGTGTTGTGGAAACCGTACCGTTGCAAGGTTCAAATCATCAAATATCATCTAGTCCAACACATGGACAA
AATCGGGCAGTCCATTTGCAGCAGCAAGGTGGACCACCAGTTCCTCTACATGCTTACGCTTCTTTAGATCCAGAGTCAAT
CAAAAAGAGAAGTCTTCCACTGTACATGTAACAGGGTAGGGTGTCAACAATCTACAAATGGGGATAACAATCATATTCAG
AAGAAACTTAAAAGAACATAATCAGTTTGTTTT--TTTTACACATTGGTGACATTT-TTTGGGATTGATTTAGCACCAGA
GAAA----TTGCTT-GAACATGATGGGTGGATATTACTCTAAACATATAAAATCAAGAGGCAGCAAGAGTGCAATCCGAA
TACCATTAGAATATGTCAGTGAAAATTCCAACTACCTATAAC-----
>chr5A_3314
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--------------------------------------------------------------------------------
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------------------------------------------------------------------------ATATATCA
CAAGCACTAAAATATTTGAAATGTCTTTCAACAAATTTGTTTGAAACAAATGCTCCAATAAATATTTTCAGCCATTGTTT
AGATCATACCTAGTGTTGTGGAAACCCTACCGGTGCAAGGCTCAAATCATCAAATATCATTTAGTCCAACACATGGATAA
AATCAGGCTGTCCATTTGGAGTAGCAAGGTGGACCACCAGTTCCTCTACATGCTTATACTTCTTTAGATCCAGAGTCAAT
CAAAAAGGGAAGTCTACCACTGTACATGTAATAGGGC--AGTGTCAACAGTCTAGAAATGGGGATAACAATCATATTCAA
AAGAAACTTAAAAGAACATAATCAGATTT-TTT--TT--ACACATTGGTAACATTTATTTGGGATTGATTTAGCACCAGA
GAAATTCCTT-----TAACATGATGGATGGGCATTACTCTAAACATATAAAATCAAGAGGCAGCAAGAGCGCAATATGAA
TATCTTGAGAACATGTCAGTAAAAATTCCAACCACTTATAA------
>chr7B_3314
--------------------------------------------------------------------------------
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------------------------------------------------------------------------ATATATCA
CATGCACTAAAATATTTGAAATATCTTTCAACAAATTTGTTTGAAACAAATGCTCCAAGAAATATTTTCAGCCATTGTTT
AGATCATACCTAGTGTTGTGGAAACCCTACCGGTGTAAGGCTCAAATCATCAAATATCATCTAGTCCAACACATGGATAA
AATTAGGCTGTCCATTTGTAGCAGCAAGGTGGACCACCAGTTCCTCTACATGCTTATACTTCT-----------GTCAAT
CAAAAAGGAAAGTCTACCACTGTACATGTAATACGGCAGAGTGTCAACGATCTAGAAATGGGTATAACGATCATATTCAG
AAGAAACTTAAAAGAACATAATCAGATTA-TTT--TTTTACACATTGGTAACATTTATTTGGGATTGATTTAGCACCAGA
GAAA----TT-----TAACATGATGGGTGGGCATTACTCTAAACATATAAAATCAAGAGGCAGCAAGAGTGCAATCCGAA
TATCTTTAGAATATATCAGTAAAAATTCCAACCATTTATAA------
>chr4B_3314
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------------------------------ATATATCA
CATGCACTAAAATATTTGAAATATCTTTCAACAAATTTGTTTGAAACAAATGTTCCAAGAAATATTTTCAGCCATTGTTT
AGATCATACCTAGTGTTGTGGAAACCCTACCGGTGTAAGGCTCAAATCATCAAATATCATCTAGTCCAACACATGGATAA
AATCAGGTTGTCCATTTGTAGCAGCAAGGTGGACCACCAGTTCCTCTACATGCTTATACTTCT-----------GTCAAT
CAAAAAGGGAAGTCTACCACTGTACATGTAATAGGGCAGAGTGTCAACGATCTAGAAATGGGTATAACGATCATATTCAG
AAGAAACTTAAAAGAACATAATCAGATTA-TTT--TTTTACACATTGGTAACATTTATTTGGGATTGATTTAGCACCAGA
GAAA----TT-----TAACATGATGGGTGGGCATTACTCTAAACATATAAAATCAAGAGGCAGCAAGAGTGCAATCCGAA
TATCTTTAGAATATATCAGTAAAAATTCCAACCATTTATAA------
>chr3B_3314
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------------------------------------------------------------------------ATATATCA
CATGCACTAAAATATTTGAAATATATTTCAACAAATTTGTTTGAAACAAATGCTCCAAGAAATATTTTCAGCCATTGTTT
AGATCATACCTAGTGTTGTGGAAACCCTACCGGTGTAAGGCTCAAATCATCAAATATCATCTAGTCCAACGCATGGATAA
AATCAGGCTGTCCATTTGTAGCAGCAAGGTGGACCACCAGTTCCTCTACATGCTTATACTTCT-----------GTCAAT
CAAAAAGGGAAGTCTACCACTGTACATGTAATAGGGCAGAGTGTCAACAATCTAGAAATGGGGATAATGATCATATTCAG
AAGAAACTTAAAAGAACATAATCAGATTA-TTT--TTTTACACATTGGTAACATTTATTTGGGATTGATTTAGCACCAGA
GAAA----TT-----TAACATGATGGGTGCGCATTACTCTAAACATATAAAATCAAGAGGCAGCAAGAGTGCAATCCGAA
TATCTTTAGAATATATCAGTAAAAATTCCAACCATTTATAA------
>SNPs
----S----S----S---S---S-S-S--S-SSS-------S----S------SSS-S-S----SS--------------
------S--S----S----S------S----------S--S-S--S----S-----S----S--S--S------S--SS-
----S--S--------S-SSS--S----------------------------SS--SS--------------------S-
SSSSSS--------------S----------SSS--S--S--------S--S-SSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S-------S--S--
--------------------------S-------------------S-----------S------------S--------
-----S--S------------SS---------------------------------------------------------
---------------------------------------------------------------S----------------
--------------------S-----------------------------------------------------------
------------------------S-------------------------------------------------------
------------------------------------------------S----------------S--S-----------
S-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------S--------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------S-----------S---------------
-S------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------S---S-----------------S
--S-----------------------------------------S-S-S-S--SS-S--------S--------------
-------S------------------S-------S-------------------S-------------------------
----S--S--------S-----------------------S---------------------S-------------S---
-------------------------------S------------------------------------------------
--------S---S-S---------S-----SS--SSS-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSS---------S---------------------------SS---SSSSSS------
S--------------------------------S------------------S-------SS------------------
-----S-------------------------------S---------------SSSSSSSSSSSS---------------
--------S--------------SSSSSSSSSSSSSSSSSSSSSSS----------------------------------
------SSSSSSSSSSSSSSSSS---------------------------------------------------------
-----------------S-----------------SS-----------------------S----------S--------
-------S-----S------------------------SS------------------------------S-S-------
-----S--------------S----S---S------S--------------------S--S----------------S--
S-------S-----------------------------------------------------------------------
---------S---S-------S--------------------------------------S-------------------
---------------------------------------------------------S----------------------
--------------------------------------------S-----------------------------------
-----S----------------------------------------S---------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------S---
-------------------------------S----S--------------------------------S----------
------------------------------------------S----
>forward_707
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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-----------------------------------------------GTTAGGTGCCGTTTTTGCGT-------------
--------------------------------------------------------------------------------
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-----------------------------------------------
>reverse_2549
--------------------------------------------------------------------------------
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--------------------------------------------------------------------CCCGATCTCTGC
ATCTGGAC------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------
>forward_2295
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------TCACCCTGCACAAGTTCGTT-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------
>reverse_3567
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------------GACATGCTTATGCTTCTTTAGATCCA--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------
