>input_sequence_42885
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-----------------------------------------------------ATGGTGGTTCTCGCCAGCACGCCCGCC
GTCGATCACATCCCGCTCCTCAGGTCGCCCGACCCCGGGGACTACTTCTCCGGCATGCCGGTGGTCGACCTCTCCAGCCC
TGGCGCGCCGCGGGCCATCGCCGACGCGTGCGAGCGCTTCGGGTTCTTCAAGCTCGTCAACCACGGGGTGCCCGCGGACA
CGATGGACAGGCTCGAGTCGGAGGCCGTCAGGTTCTTCTCGCTGCCGCAGGCCGACAAGGACCGCTCCGGCCCGGCCTAC
CCGTTCGGCTACGGCAGCAAGCGCATCGGGCTCAATGGCGACATGGGGTGGCTCGAGTACCTGCTCCTGGCCGTCGACTC
CGCGTCGCTCTCCGGCGCCTGCGCCGTCCCGTCCTGCGCGCTCTTCCGGTACGTTCAAA-----------------TGCC
CGCGCGAACGGGATGCAAGCCACTGCGATACGACGCGTGTCTGGTTGGTCTCACCGAGTGCTTACGTTGCACACATGGCG
TGTGTTTGCAGGGCGGCGCTGAACGAGTACATCGCGGCGGTGCGGAAGGTGGCGGTGCGGGTGATGGAGGCGATGGCGGA
GGGGCTGGGCATTGCGGCCGTGGACGCGCTGAGCGGGATGGTGACGGCGGAGGGGAGCGACCAGGTGTTCCGGGTGAACC
ACTACCCGCCGTGCCACGCGCTGCAGGGGCTGGGCTGCAGCGCCACCGGCTTCGGCGAGCACACGGACCCGCAGCTCATC
TCCGTGCTGCGCTCCAACGGCACGTCCGGCCTGCAGATCGCGCTCCAGAACGGGCAGTGGGTGTCCGTGCCCTCGGACCG
CGACGCCTTCTTCGTCAACGTCGGCGACTCGTTGCAGGTATGCCCGCTCCTGAGTCCTGACCCTGACACGTGACGCCTTT
TCGTGCACGCGCCACTCTG-TTCTTTTTCTACTACTACTAGCACATTTATACTTTTCTA---AAACGATTTGCACTGTGC
GCTTTACTAAAATGACGTGAGGCATGATTAAATTGGAGATAGTGCACTACTAGCACGCAGAGCCATCGTTTGGT-----T
CGCATCATCACCAGTAAAAACGAACAACATCCTATCACCCTGAGCAACTAACAAAAAC-CGTAGTAATAAAATAATAGTT
TGTCTAATTCACATCTAGATGTTTTTTAAGGATGTCACATCTAACCTTCCACAAACATGTAATGTAGCAACAAAAAACAA
AAAAAAACTAGGATAAAAAAATAGATCATAAATAAAGTGGACATCAGTTTAGATGTAGATATGTCTTAGACAGACTCATA
AAATAAACAAACCGAGAAAACGAAAGAAAGAAAGAAAGAAAGAAAGAGATGGTTGTGATGCACGTCGATACGGCTGCCAC
GGCAGAAACAGGAACAGGTGGCTCC----CTGGACCAAATAACTGCTGCCGACCCATCGCATATTCGCCACATCAGTATA
ATCCG--TTAGGCACATGAGCTTCGCGTGATGGCTGCATGGCATCTTACTA-----ATCGTTAGCTGTGTGTTCTTGCTG
CTTACGTATCG-----TATCGTATATA---TGCCTTGATCTCATGTACTACGGTTTTATTTTTGGGA-------------
--TGTGTGTGTGTAGGTGCTGACCAACGGGAGGTTCAAGAGCGTGAAGCACAGGGTGGTGGCCAACAGCCTAAAGTCTAG
GGTTTCCATGATCTACTTTGGAGGGCCAGCGATGACACAGAGGATTGCACCATTGCCGCAGCTGCTGGGCGCGGGAGAGC
AGAGCCTGTACAAGGACTTCACATGGGGCGAGTACAAGAAGGCTGCCTACAACTCCAGGCTCGGGGACAACAGGCTGGCT
CAGTTCCACAGGTAG-----------------------------------------------------------------
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-------------------------
>chr3D_1_TraesCS3D01G293800
AGCCTTCCTGCGGGGTGCAGTTGCCCCGTGATTGGCCGCCCATCGATTGTTGACCGGGAGGCATTGTTCGTCTTCGTCCT
CTCGGCGGATTTCCTAGTTCCCAATGCCGCGCCCCTAGAC-------TAGGTAGGCGACCGCGAATTCAGCTGAAATCGC
GAGACGGCGAGCCGGACAATGGTCGGGTCAATCTCTGAATCATCGTTTCTCTCCCCTTCTTTACTCGCCCACAGATTGAC
TCTATATAGCTACATCGTTTATCCAATTGGGATGTACTAGAAGG--------------------------GAATAAACGA
CGCATGCATGATGCTGGGCTAACCAACGCGTACTATCGTGTGAAGCATCAGGCGTGATCTAATCGAGCGC--ATTGCGTG
TCGCGCTCCATCGCCGATCAAACATGTCATTTGCCAAATGGAGCAGTAGCA------------ACGATCGACAACGGA--
GTGATTTGGCACAACCTTTGCCAGCGACGCTCGCCCGAGATTTTACCGCAAGGAGATTTGGTGAGATGAGATAGGGGAAA
TAGAGTATGGGCGCGAACCCCTGGCGGCATGGGTGCCGTACGCGGGGCCGGTGGATCTCCTGGGGACACGTCTGAGACCC
CGCCACGATCGCCTGGCTCCATTGCCACCACAGGCCAGCGAGCGAGAAAAGAGGAGGCCGCGACATGAGCGGGGCATTCC
CCCAACCATCTGCGAGGCCGGATGCGCTGAAGCAGCGAGCCAACTAACCCCATCGGCCTCGTCCCGATTCATCTCTTCTC
TCCTCCTCCTTTCCCACTGTCAGTTGGCCCT-----TGCCCTGCCCCCACCGCGCGCCGCTCCTTCCCGATCG-------
----------------CCTCTCCCCTCCCCTATATATATGCCCCGCGGCCTCCCCT--ACACACACTCCAACGCAGTGGC
AACAGCATCTCCCCTGTT--------CCGCCCGCTCGCCTCTGCTTCTTTAG-TTCTTTCCAGAGCGGCTCTGCTCTGCT
CCTCGCCTCTCTCGATCGCGCATACGTACCATATTTGGCAGCC-----CAGCCATGGTGGTTCTCGCCAGCACGCCCGCC
GTCGATCACATCCCGCTCCTCAGGTCGCCCGACCCCGGGGACTACTTCTCCGGCATGCCGGTGGTCGACCTCTCCAGCCC
TGGCGCGCCGCGGGCCATCGCCGACGCGTGCGAGCGCTTCGGGTTCTTCAAGCTCGTCAACCACGGGGTGCCCGCGGACA
CGATGGACAGGCTCGAGTCGGAGGCCGTCAGGTTCTTCTCGCTGCCGCAGGCCGACAAGGACCGCTCCGGCCCGGCCTAC
CCGTTCGGCTACGGCAGCAAGCGCATCGGGCTCAATGGCGACATGGGGTGGCTCGAGTACCTGCTCCTGGCCGTCGACTC
CGCGTCGCTCTCCGGCGCCTGCGCCGTCCCGTCCTGCGCGCTCTTCCGGTACGTTCAAA-----------------TGCC
CGCGCGAACGGGATGCAAGCCACTGCGATACGACGCGTGTCTGGTTGGTCTCACCGAGTGCTTACGTTGCACACATGGCG
TGTGTTTGCAGGGCGGCGCTGAACGAGTACATCGCGGCGGTGCGGAAGGTGGCGGTGCGGGTGATGGAGGCGATGGCGGA
GGGGCTGGGCATTGCGGCCGTGGACGCGCTGAGCGGGATGGTGACGGCGGAGGGGAGCGACCAGGTGTTCCGGGTGAACC
ACTACCCGCCGTGCCACGCGCTGCAGGGGCTGGGCTGCAGCGCCACCGGCTTCGGCGAGCACACGGACCCGCAGCTCATC
TCCGTGCTGCGCTCCAACGGCACGTCCGGCCTGCAGATCGCGCTCCAGAACGGGCAGTGGGTGTCCGTGCCCTCGGACCG
CGACGCCTTCTTCGTCAACGTCGGCGACTCGTTGCAGGTATGCCCGCTCCTGAGTCCTGACCCTGACACGTGACGCCTTT
TCGTGCACGCGCCACTCTG-TTCTTTTTCTACTACTACTAGCACATTTATACTTTTCTA---AAACGATTTGCACTGTGC
GCTTTACTAAAATGACGTGAGGCATGATTAAATTGGAGATAGTGCACTACTAGCACGCAGAGCCATCGTTTGGT-----T
CGCATCATCACCAGTAAAAACGAACAACATCCTATCACCCTGAGCAACTAACAAAAAC-CGTAGTAATAAAATAATAGTT
TGTCTAATTCACATCTAGATGTTTTTTAAGGATGTCACATCTAACCTTCCACAAACATGTAATGTAGCAACAAAAAACAA
AAAAAAACTAGGATAAAAAAATAGATCATAAATAAAGTGGACATCAGTTTAGATGTAGATATGTCTTAGACAGACTCATA
AAATAAACAAACCGAGAAAACGAAAGAAAGAAAGAAAGAAAGAAAGAGATGGTTGTGATGCACGTCGATACGGCTGCCAC
GGCAGAAACAGGAACAGGTGGCTCC----CTGGACCAAATAACTGCTGCCGACCCATCGCATATTCGCCACATCAGTATA
ATCCG--TTAGGCACATGAGCTTCGCGTGATGGCTGCATGGCATCTTACTA-----ATCGTTAGCTGTGTGTTCTTGCTG
CTTACGTATCG-----TATCGTATATA---TGCCTTGATCTCATGTACTACGGTTTTATTTTTGGGA-------------
--TGTGTGTGTGTAGGTGCTGACCAACGGGAGGTTCAAGAGCGTGAAGCACAGGGTGGTGGCCAACAGCCTAAAGTCTAG
GGTTTCCATGATCTACTTTGGAGGGCCAGCGATGACACAGAGGATTGCACCATTGCCGCAGCTGCTGGGCGCGGGAGAGC
AGAGCCTGTACAAGGACTTCACATGGGGCGAGTACAAGAAGGCTGCCTACAACTCCAGGCTCGGGGACAACAGGCTGGCT
CAGTTCCACAGGTAGCATCGCCTGCCGCCTGGGCCCGCTCAAGGAGCAGCTTTTACCAAGCCAGCCAGCTAGCTAGTAGC
TAGCTAGCTGCCGTGGCTTATG---TTTCGCACACCGTGAAGACGAAGATGAAGATGAAGAGGAAAG-------C----T
ACTAGAAAAGAAAGGGAAACAGAGCTAAAAGAAGATGATTTCAAGACACAT-----GTGGTAGAGCTGCGGACGTAGCTA
GTA-------GATCTTTTTCGTGTGCGTGTGCGCGTGTGTGTGCGTGTGCGTGTGTGTTCATAGTTGCTAAAACTCGCCT
TTCCTATTCGGGAATGCCGGACGAACCATGAACAGATAAGTTAACTTGATGAATAGTTAGTTAGTGTGAACCAGATATAG
-------------------------C-----------------------TTCTGATCTTTTCTCAAATTCATGAGTATTA
GTGGCTGG------CTTGGA------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------TCTTGTTTTCTGTACTTCCGATAA
CTGTAATTGTGGTGTACGTAGCGTAGTCGTGTGTACACGTGGACCTTCTGTTTATAACCTGCCAATGATCCAACGTTTCC
CTTTCACTCTTTCA---GTCTTTCGTAGCGTGCGGCTTGGACGCGCGGTGATGGAGATCTCTGGTGCCTT----------
-------------------CTTTATTGCTGGCAGTCGAGCAGCTCGTTGGCATTACAAATCCTGGTAGGCCCTGAAAAAA
AAAGG---TCCTGGTAGGCCCGGTCCAACGGGGTCCATTGACCGGAGAATTTTGGGCCTGCACGAGCGGGGGCCCGCCGG
AACTCACGCGAATGAGGAAGCGCGCGCATGTGTGGACTGCTGCTG-----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------GCTGGCTGGCTGGCCTGCTCG-CGGTGCCGCTTACCGCTGCTGATCCGCTACGCGTT
GCCTGTGACATCTTTTTTTTTTCTCTTCTGGAGTCCTGGATTTGTAGGGGCCACGCGGATTTTTAGTTGCACGCCACCAA
GTTTTTCGCTGCTGTTACCCACTCCTACCAAAATGAGTGTGGTTGATTTAGTACAATTTTAGTACACTGGATTGGGTCCT
CGAACATGCTGATCTACTTGGGGCA
>chr3B_1
AGCCTTCCTGCAGGCTGCAGTTGCCCCGTGATTGGCCGCCCATCGATTATTGACCGGAAGGCATTGTACGTCTTCGTCCC
CTCGGCGGGTTTCCTAGTTCCCAATGCCGCGCCCCTAGACTAT----------GGTGACCGCGAATTCAGCTGAAATCGC
GAGACGGTGAGCCCGACAATGGTCGGGTCAATCTCTGAATCATCGTTTCTCCCCCCTTCTTTACTCACCCACAGATTGAC
TTTACACG----CATCGTTTATCCAATGGGATCTACCGATCTAGTACTTTGGGACGGAGGGAATACAAGAGAATAAACGA
CGCAGGCATGATGCTGGCCTAACTAACGCG---TATCGTGTGAAGCATCAGGCATGATCTAATCGAGCGCGTATTGCGTG
TCGCACTCCATCGCCGATCAAACATGCCATTTGCCAAATGGAGCGAACCAGCAGTTAGCAACGACGATCGGCAGC-GA--
GTGATTTGGCTCAACCTTTGCCAGCTACGCTCGCCCGAGATTTTACC-------------GTGAGATGAGATACGGCA--
--------GGGCGCGAACCCCTGGCGGCATGGGTGCCGTACGCAGGGCCGGTGGATCTCCTTGGGACACGTCTGAGACCC
CGCCACGATCGCCTGGCTCCATTGCCACCACAGACCACCAAGCGAGAAAAGAGGAGGTGGCGACATGAGCGGGGCATTCC
CCCAACCATCTGCGAGCCCGGATGCGATGAAGCAGCGAGCCAACCAACCCCATCGTCCTCGTCCCGATTCATCTCTTCTC
TCCTCCTCCTTTCCCACTGTCAGTTGGCCCTTCCCCTGCCCTGCCCCCACCGCGCGCCGCTCCTTCCCGATCGGCAGGTG
CCCTCGCCTCTCCTCTCCTCTCCCCTCCCCTATATATATGCCCCGCGCCCTCCCCC--ACACACACTCCAACTCAGTGGC
AACAGCATCTCCCCTGTT----CCGCCCGCCCGCTCGCCTCTGTTTCTTTTCTTTCTTTCCACAGCGGCTCTGCTCCGCT
CCTCACCTCCCTCGATCGCACATA----CCATATTTGGTAGCTCAGCACAGCCATGGTGGTTCTTGCCAGCACGCCCGCC
GTCGATCACATCCCGCTCCTCAGGTCCCCCGACCCCGGGGACTACTTCTCCGGCATGCCGGTTGTCGACCTCTCCAGCCC
TGGCGCGCCGCGGGCCATCGCCGACGCCTGCGAGCGCTTCGGGTTCTTCAAGCTCGTCAACCACGGGGTGCCAGCGGACA
CGATGGACAGGCTCGAGTCAGAGGCCGTCAGGTTCTTCTCGCTGCCGCAGGCCGACAAGGACCGCTCCGGCCCGGCCTAC
CCGTTCGGCTACGGCAGCAAGCGCATCGGGCTCAATGGCGACATGGGCTGGCTCGAGTACCTCCTCCTCGCCGTCGAGTC
CGCGTCGCTCTCCGGCGCCTGCACCGTCCCGTCCTGCGCGCTCTTCCGGTACGTTCAAA-----------------TGCC
CGCGCGAACGGAATGCAAGCCACCGCGATACGACGCGTGTCTGGTTGGTTTCACCGAGTACTTATGTTACATGGCGTGT-
----TTTGCAGGGCGGCGCTGAACGAGTACATCGCGGCGGTGCGGAAGGTGGCGGTGCGGGTGATGGAGGCGATGGCGGA
GGGGCTGGGCATTGCGCCCGTTGACGCGCTGAGCGCGATGGTGACGGCGGGGGGGAGCGACCAGGTGTTCCGGGTGAACC
ACTACCCGCCGTGCCACGCGCTGCAAGGGCTGGGCTGCAGCGCCACAGGCTTCGGCGAGCACACCGACCCGCAGCTCATC
TCCGTGCTGCGCTCCAACGGCACGTCCGGCCTGCAGATCGCGCTCCAGAACGGGCAGTGGGTGTCCGTGCCCTCGGACCG
CGACGCCTTCTTCGTCAACGTCGGCGACTCGTTGCAGGTATGCCCGCCCGT---TCCTGACCCCGACACGTGACGCCTTT
TCGTGCACGCGCTAACCTG-TTCTTTTTCTACTACTACTAGCACATTTATACTTTTCTA---AAACGATTTGCACTGTAC
GCTTCACTAAAATGACGTGAGGCATGATTAAATTGGAGATAGTGCACTGCTAGCACGCAGAGCCATC-----GT-----T
CGCATCATCACCAGTAAAAACGAACAACATCCTATCACCCTGAGCAACTAACAAAAAAACGTAGTAAAAT----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
GAAGAAATAAACCGAGAAAACGAAAGAA-GAAAGA------------GATGGTTGTCATGCGCGCTGGTACGGCTGCCAC
GGCAGAAACAGGAACAGGTGGCTCCCTCCCTGGACCAAATAACTGCTGCCGACCCATCGCATATTCGCCACATCAGTATA
ATCCG--TTAGGCACATGAGCTTCGCGTGATTGCTGCATGACATCTTACTA-----ATCGCTAGCTGTGTGTTCTTGCTG
CCTACGTACCG-----TATCGTATATA---TGCCTTGATCTCATGTACTACTGTTTTATTTTTGTGA-------------
--TGTGTATGTATAGGTGCTGACCAACGGGAGGTTCAAGAGCGTGAAGCACAGGGTGGTGGCCAACAGCCTAAAGTCTAG
GGTTTCCATGATCTACTTTGGAGGGCCAGCGATGACACAGAGGATTGCACCATTGCCGCAGCTGCTGGGCGCGGGAGAGC
AGAGCCTGTACAAGGACTTCACATGGGGCGAGTACAAGAAGGCTGCCTACAACTCGAGGCTCGGGGACAACAGGCTGGCT
CAGTTCCACAGGTAGCCTCGCCTGCCGCCTGGGCCTGCTCAAGGAGCAGCTTTTACCAAGCCAGCTAGCT--CTAGCTTA
GCTAGCTCTGCCGTGGCTTGTA---TTTCCCACACGATC--------GATGAAGATCAAGAGGGGGGGAAGCTAC----T
ACTAGAAAAGAAAAAGAAACAGGGCTAAAAGAAGATGATTTCAAGATTCACATGCAGTAGTAGAGCTGCGGAGGTAGCTA
GATCCTTTT--------------------TGCGTGTGCGCGTG------CGTGTGTGTTCATAGTTGCTAAAACTCGCCT
TTCCTATTCGGGAATGCCGGACGAACGATGAACAGATAAGTTAACTTGATGAA----TAGTTAGTGTGAACCAGATACAG
-------------------------CAGAGGATTGGCATCAAAGTGGTCTTCTGATATTTTCTCATATTCATGAGTGGTA
GTACCTGGCTTCGACTTCGA------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------TCTTGTTTTCTGCACTTCCGATAA
CTGTAAATGTGGTGTAGGTAGCGTAGTCGTGTGTACACGTGGACCTTCAGTT--TAACCTGCCAATGATCCAACATTTCC
CTATCACTCTTTCAA---TCTTTCGTAGCGTGCGGCTTGGACGCGCGGTGATGGAGATCTCTGGTGCCTT----------
-------------------CTTTATTGCTGGCAGTCGAGCAGCTCGTTGGCATTACAAATCCTGGTAGGCCCTGAAAAAA
ATAAAAAATCCTGGTAGGCCCGGTCCAACGGGGTCCATTGACCGGAGAATTTCGGGCCTGCACGAGCGGGGGCCCGCCGG
AACTCACGCGAATGAGGAAGCGCGCGCATGTGTGGCCTGCTGCTGCTTTTTTTTTCTCAACACAGTACAAACACAAGTGT
TCGTATACACACGCATACACTCATTCCCTTGAACGCACACATGCACCGTCTTCGAAAGACTGAGCTGACATATCATTTTG
AAATTTACGAAGTCATTGTAGGCATCTCGTCATCGTCATCGACAGAAACGTTTTCTCCCACTGAATGCACACCGTCGGAA
ATCCTGAAATAAATCCAGAAATAAATGCGAGCATCAGGACTTGACTGCTGGTGGGCTGGGGATACTACGGTTCCTCTAAC
CATCCAACCACATGTTACTGCTGGCTGGCTGGTTGGCCTGCCTGTCGGTGCCGCTAGG------TGATCCGCTACACGTT
GCTTGTGACCTTTTTTTTCTTA------TGGAGTCCTGGATTTGTAGGGGCCACGCGGATTTTTAGTTGCATGTCACCTT
TTTTTTC-------------------------------------------------------------------------
-------------------------
>chr3A_75
--------------------------------------------------------------------------CGTCCT
CTCGGCGGGTTTCCTAGTTCCCAATGCCGCGCCCCTAGACTAGGTACTAGGTAGGTGACCGCGAATTCAGCTGAAATCGC
GAGACGGTGAGCCGGACAATGGTCGGGTCAATCTCTGGATCATCGTTTC-CCGCCCTACTTTACTCGCCCACGGATTGAC
TCTATATAGTTACATCGTTTATCCAATTGGGATGTACTAGAAGG--------------------------GAATGAACGA
CGCATGCATGATGCTGGCCTAACCAACGCGTCC---CGTGCGAAGCATCAGGCATGATCTAATCGAGCGC--ATTGCGTG
TCGCGCTCCATCGCCGATCAAACATGTCATTTGCCAAATGGAGTTG---------TAGCGACGACGATCGACAAC-GGAG
GTGATTTGGCACAACCATTGCCAGCGACGGTCGCCCGAGATTTTACCGCAAGGAGATTTGGTGAGATGAGATGGGGGAAA
TAGAGCATGGGCGCGAAGCCCTGGCGGCATGGGTGCCGTAGGCGGGGCCGGTGGATCTCCTGGGGACACGTCTGAGACCC
CGCCACGATCGCCTGGCTCCATTGCCACCACAGACCAGCAAGCGAGAAAAGAGGAGGGCGCGACATGAGCGGGGCATTCC
CCCAACCATCTGCGAGGCCGGATGCGATGAAGCAGCGAGCCAACCAACCCCATCGCCCTCGCCCCGATTCATCTCTTCTC
TCCTCCTCCTTTCCCACTGTCAGTTGGCCCTTCCCCTGCCCTGCCCCCACCGCGCGCCGCTCCTCCCCGATCG-------
----------------CCTCTCCCCTCCTCTATATATATGCCCCGCGGCCTCCCCCACACACACACTCCAACTCAGTGGC
AACAGCATCTCCCCTGTTCCGCCCGCCCGCTCGCTCGCCTCTGTTTCTTTTCTTTCTTTCCACGGCGGCTCTGCTCCGCT
CCTCACCTCCCTCGATCGCACATACCATATATTG----------------GCCATGGTGGTTCTCGCCGGCTCGCCCGCC
GTCGATCACATCCCGCTCCTCAGGTCGCCCGACCCCGGGGACAACTTCTCCGGCATGCCGGTCGTCGACCTCTCCAGCCC
TGGCGCGCCGCGGGCCATCGCCGACGCGTGCGAGCGCTTCGGCTTCTTCAAGCTCGTCAACCACGGGGTGCCCGCGGACA
CGATGGACAGGCTCGAGTCGGAGGCCGTCAGGTTCTTCTCGCTGCCGCAGGCCGACAAGGACCGCTCCGGCCCGGCCTAC
CCGTTCGGCTACGGCAGCAAGCGCATCGGGCTCAATGGCGACATGGGGTGGCTCGAGTACCTGCTCCTCGCCGTCGACGC
CGCGTCGCTCTCCGCCGCCTGCGCCGTCCCGTCCTGCGCGCTCTTCCGGTACGTTCAAAATGGCTGCTGCCTGCGGTGCC
CGCGCGA----------------------ACGACGCGTGTCTGGTTGGTCTCACCGAGTGCTTACGTTACACGCATGGCG
TGTGTTTGCAGGGCGGCGCTGAACGAGTACATCGCGGCGGTGCGGAAGGTGGCGGTGCGGGTGATGGAGGCGATGGCGGA
GGGACTGGGCATTGCGCCCGTCGACGCGCTGAGCGCGATGGTGACGGCGGAGGGCAGCGACCAGGTGTTCCGGGTGAACC
ACTACCCGCCGTGCCACGCGCTGCAGGGGCTGGGCTGCAGCGCCACCGGCTTCGGCGAGCACACGGACCCGCAGCTCATC
TCGGTGCTGCGCTCCAACGGCACGTCCGGCCTGCAGATCGCGCTCCAGAACGGGCAGTGGGTGTCCGTGCCCTCGGACCG
CGACGCCTTCTTCGTCAACGTCGGCGACTCGTTGCAGGTATGCCCGCCCGT---TCCTCACCCCGACACGTGACGCCTTC
TCGTGCACGCGCTGACCTGTTTCTTTTTCTACTACTACTAGCACATTTATACTATTCTACTAAAACGATTTGCACTGTGC
GCTTTACCAAAATGACGTGAGGCATGATCAAATTGGAGATAGTGCACTAGTAGCACGCAGAGCCATC-----GTTTGGTT
CGCATCATCGCCAGTAAAAACGAAGAACGTCCTATCACCCCGAGCAACTAACAAAAAACCGTAGTAAAAT----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
AAATAAATAAACCGAGAAAACGAAAGAAAGAAAGA------------GATGGTTGTGATGCGCGTCGGTACGGCAGCCAC
GGCAGAAGCAGGAAAAGGTGGCTCCCTCCCTGGACCAAATAACTGCTGCCGGCCCATCGCATATTCGCCACATCGGTATA
AATCCGTTTAGGCACATGAGCTTCGCGTGGTTGCTGCATGGATGGCATCTACTGTGATTGCCACCTGTGT--GCTTGCTG
CCTACGAATCGTATCGTATCGTATGTAGTATGCCTTGATCCCACATACTACAGTTTCTTTTTCTAATATTTGGATGGATG
TGTGTGTATATATAGGTGCTGACGAACGGGAGGTTCAAGAGCGTGAAGCACAGGGTGGTGGCCAACAGCCTAAAGTCTAG
GGTTTCCATGATCTACTTTGGAGGGCCAGCGATGACACAGAGGATTGCACCATTGCCGCAGCTGCTGGGCGCGGGCGAGC
AGAGCCTGTACAAGGACTTCACATGGGGCGAGTACAAGAAGGCTGCCTACAACTCCAGGCTCGGGGACAACAGGCTGGCT
CACTTCCACAGGTAGCCTCGCCTGCCGCCTGGGCCCGCTCAACGAGCAGCTTTTACCAACCCAGCCAGCTACCTAGCTTA
GCTAGCTCTGCCGTGGCTTGTAGTATTTCCCACACGATC--------GATGAAGATGAAGAGGGCGGAAGCTACTACTGT
ACTAGAAAAGAAAAAGAAACAGGGCTAAAAGAAGATGATTTCAAGATTCACATGCAGCAGTAGAGCTGCGGAGGTAGCTA
GTAAGTAGTAGATCCGTTTTGCCTGCGTGTGCGTGTGCGTGTGA-----CGTGTGTGTTCATAGTTGCTAAAACCCGCCT
TTCCTCTTCGGGAATGCCGGACGAACGATGAACAGATAAGTTGACTTGATGAA----CAGTTAGTGTGAACCAGATATAC
TAGCAGAGGGTGGCATCAAAGTGGTC-----------------------TTCTGATCTTTTCCCAAATTCATGAGTGGCA
GTATCTGGCCTCGATCTTGAAGCATAATTGGTTTGCTGCCAAAAATTAGCATGCCAATATTTGTCATTGTGTCAAATATT
GGCAACTATTTGGTTGGCTACGAGTTATTTTGCCTCTCTCACATAAAGTTGCCAATAGTTGGCAAGTCTCGGTATTGCCA
ATAGTTGACAGTGCCAATATTTGGCAAGTTAAATATTGGTAGGAAACCAATTATGCTCTTGTTTTCTGTACCTCCGATAG
CTGTAATTGTGGTGCCCGTAGCGTAGTCGTGTGTACACGTGGGCCTTCTGTT--TAACCTGCCAATGATCCAGCGTTTCC
CTTTCGCTCTTTCAACAGTCTTTCGTAGCGTGCGGCTTGAACGCGCGGTGATGGAGATCTCTGTCTGTCTTGACTTCAAT
TGCCAAAATGAATTGGTGCCTTTATTGCTGGCAGGCCAGCAGCTCGTTGGCATTACG-----------------------
------AATCCTGGTAGGCCCGGTCCGACGGGGTCCATTGA-CGGAGAATTTCGGGCCTGCACCAGCGGGGGCCCGCCGT
GCCACCGGAACTCA------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------TGGCCTGCCCGCCGGTGCCGCTTACCGCTGCTGATCCGCTACACGTT
GCTTGTGACATCTTTTTC---TCTCTTCTCGAGTCATGGATTTGTAGGGGCCACGCGGATTTTTAGTTGCACGCC--CAA
GTTTTTCGCTGCTGTT----------------------------------------------------------------
-------------------------
>chr1D_1781
--------------------------------------------------------------------------------
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--------------------------------------------------CGGCCAGTGTGTGTCCGTGCCCTCCGACCG
CGACGCCTTCTTCGTCAACGTCGGCGACTCGTTGCAGGTATGCT-GCCTGT---TCCTGACCCTGACACGTGACGCCTTT
CCGTGCACGCGCTAATCTG----TTCTTTTTCTACTACTAGCACATTTTTACTTTTCTA---AAACGATTTGCACTGTAC
GCCTTACTAAAATGACGTGAGGCATGATTAAATTGGAGATAGTGCACTACTAGCACGCAGAGCCATC-----GTTCGGTT
AGCATCATCACCAGTAAAAACGAAGAACATCCTATCACCCCGAGCAACTAACAAAAAAACGTAGTAAAAT----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----AAATAAACCGAGAAAA----AGAAAGAAAGA------------GATGGTTGTGACGCGCGTCGGTACGGCTGCCAC
GGCAGAAACAGGAACAGGTGGCTCCCT----GGACCAAATAACTGCTGCCGACCCCTCGCATATTCGCCACATCAGTATA
ATCCG--TTTAGGCACA----------TGATTGCTGCATGGATGGCATCTAGTGTGATTGCCACCTGTGTGTGCTTGCTG
CCTACGAATCGTATCATATCGTATGTA---TGCCTTGATCTCA-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------
>SNPs
-----------S--S---------------------------------S--------S---------S------------
--------S----------------------------------------------S------------------------
-------S-------------------------------------------S----------------------------
---------S----------------------------------------------------------------------
-----------------S-------------S---------------------S--------------------------
--------------------------------------------S-SSSSS------------------------S----
--------------------------------------------------------------------------------
-----S--------------------------------------------------------------------------
---------------------------------S-----S-----------------S----------------------
--------------------------S-----------------S----------S------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------S----------------S-------
-------------------------------------------S------SS----------S-------------S---
----S----S---------S-----SSS----------S---S-------------------------------------
--------------------------------------------------------------S-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------S-----------
--------------------------------------------------------------------------------
-----------S-----------S--------------------------------------------S---S-------
--------------------------------------------------------------------------------
----------------S----S-------------S--------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------S-S-SSS--------------------------
------------S-S-----------------------------------------------------------------
-------------------------------------------------------------------SSSSS--------
---------------------------------------------------------S---------S-SSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
-------S---------------------------SSSSSSSSSSSS--------------S-----S------------
--------------------------------------------------------------------------------
-------------------------------S----------------------------S-------------------
-S-------------------------------------------------S------------S---------------
-------S---S--------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------S------------------------------------------------------S----SSSS
SSSSSSS------------S-S-------S-----SS-SSSSSSSSS----------------SSS--------------
-------------SS-------S-----------------------SS--S-------S-------------S-------
--------------SS---S-SS----------S---S-----SSSSSS-------------------------------
--------------------------S--------------------------SSSS-----------------------
----------------------------------------------------------------------------SS--
--SS-------------S--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------SS--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-S-SS-----------------------------------------------S---------------------------
-----------------------------------S--------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------S--------S---------------------------------S----
--S---------------S-------------------------------------------------------------
----------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSS
>forward_451
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------TGCCAAATGGAGCAGTAGCA-----------------------------
--------------------------------------------------------------------------------
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-------------------------
>reverse_1968
--------------------------------------------------------------------------------
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-----------------------------------------------TCCTGAGTCCTGACCCTGAC-------------
--------------------------------------------------------------------------------
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-------------------------
>forward_1068
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------CTCTCGATCGCGCATACGTA----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------
>reverse_3062
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------GTTTCGCACACCGTGAAGAC---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------
