>input_sequence_42612
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-------------------------------------------------------------------------------A
TGGCGGCCCCTCTGGTGCTCATCCTCTTGGTCGCCATGTTCACCGGCTCAGGTCAGCGGCCCCAATCCCCACAGCTCGCT
CTGCGCAAACATAGTAGTTTTGCCTGC-CTAGATTGAGTTCCTAGGTTTCTTTCTTTTCCATTAACTCCCCAGGCCTGAA
TCCTTTTGTTCT---AGCACTTCTTGAAGGTGCTTTGGACA---TCTAACAAACTTTCCTT----GTATCTTCTTGAAAA
CTTTTGTCTCTAGACTAGATCAGAGA----------TGTTCTTGCTATTTGTGCCTGGTTTTCTCCATCCTCCAGAACTG
-------TAGAACAAGAAATATTTATTTCCTTGCTGCTG--------GATTCGAGAGCTTATTGTTGTTTGGTTGGTGAC
C-------TAGCAGATGCGATGTACTGCGTGTGCAAGTCGGACGCGAACCCGGTGGCGATGCAGAAGGCCATCGACTACG
CGTGCGGCAAGGGCGCCGACTGCACCCAGATCACCTCCAGCGGGCCCTGCTTCCAGCCCTCCTCCGTCGTCGCCCACTGC
TCCTACGCCTGCAACAGCTACTACCAGAAGAACGCCGGCATGGGCGCCACCTGCGACTTCATGGGCGTCGCCACCCTCAC
CGGCGCCGACCCCAGCGCCGGATCCTGCAAGTACCCCGCCAGCGCAAGGTTAACCCCCATCTG-----------------
---CCCACATGCCTCCCTCACATGTTTGTTTGGCCTCGAACATGCTTACTACTCTACTAGATCAGTGAAACTGTTTAATA
ATAGATTTACGGGCATTTCCCTTTTAATACTCCTGATTGGAG-----TACGTGAATCTGGGAAGTAGTATATCT------
-TAACCGAGATGCAGTATGGCCT----CTGACTGCCCCTGACTGGTGTCATGGGTCGCTGGGCATAGTTTACTTGGTG--
---TTATTAGTGTGCCGTAATCTAGATTCTTCACACGGCCGCACATGAGCCACGTACACACATGATAGTTAATTCAACGT
GCCGTAATCTAGTTCAGGGTTCATGGTTACCAGAGTTACCGAGTAGTACTACCAGCATTCTGAAGTGTGTAGTA--ACCA
TGTTTCAGCTTGCAATATACCAACACAAAGTTGATCTGAAAAATCATTTGCAAAAGCTGTCAAAGCAGATTCGTGGAATA
TGTGCCGCGCCCACTAATGACAGACGAATATTACAGTACATCTGCAGCTAAACAACATA---TGCATCTACACA---TAG
TAGTACCACTACTGATGAACACTCTAGTAGCTGGA--TGTTCTCCCTTT--GCTACTGTTCTTGAGTTCTTGCTTTTGCC
CATGTGAAGC-AAAAGGTGTCTGAATCGGATATTTCTAGTCCGACCTTAAAGGGCGGTCCATCTTTTGCCGAATGCCACC
CGTTCAAAGTTGCATTGAACTTGGGCAAGCGCGTCGGCATCATTGCATCTGCATTATATATGCAATAGATAGATTCTAAG
CAACTTTCTCGCTATTTTGAAGATGGGACATGTGAGACATTTCACCGTGCAATGTAC----TG-----ACCGACGATGTA
CGTGTGCGCTTTGTGTACGTTTCTTTCTTTCTGCAGCGGCGT------------A------GGCACCGGCGGCATGGGAA
CCGGCGGCACAGGGACAGGTACCGGCGGCATGGGAACCGGTACAGGAACCAGCACCGGAGCGGGCACGGGCGTCGGCACC
GGCACCAGCACCGGCGGCATGGGAAGCATGACCCCGCCGGGCGCGACCAGCACCGGGATGCCGGGAAGCCCCTTCGGCGG
CGGCGCGTACGGCCCATC---CATGAACCAGGACTACAGCGCAGCCGTGGTCGGTCGCCGCGTGGCCGCCGCGGGGCTCC
TCGTGGCGGCAGCCGCGCCGCTCCTCCTCCACTTCATCTGA---------------------------------------
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-------------------------------------------------------------------
>chr1B_1_TraesCS1B01G346200
GTTAACTTTGAATGCTGATAAACATAGTAACTGTAGTGCCTTTGTAAACATGCTAGTTATAGGTCCCTACCACTCACGAG
GAACAAGCCATTTTTGCCATGTACACGACGGGCCAGTGCCCAC-------ATGTGAAGGACACACCA-----TGAAGCAA
GAGGACACACGAAGAGGGTAAACGGCCCATGTGAGAAACACCCAGAAAACAGTCGAC---TCAGGCCATGTGAGGGCACC
GATCATACGGGGAAACAAAAGCGAGGGCGAAAGCACTTCACTCCCCAGCAAGATCGACGTCAAGCCACGCTGGCGTAGTG
CAGAATCTAGTACTGTAATGAAAAGATGTATAGACAGAGCAAGGAAGAAAAAATAAAGAGCAACAAGTAC--CATCCGAC
CGTTAATCCACACTGCCGACTGGCCGTCACCACCCACTTTACATTTTTGACAGTGGCTCGCCACCGCACGCTGGACCGGG
CAGCGAGCCGCAGTACTACT-GGTTTGGTGGAGAAATAAAGCCGTCCCCGGCCAAGCGAGAA------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------------------------------------------------CACAGTGCCGCATGCCCGCCGCATCGG
CCACTCCCACCCATGCCTGCCATGCCGCGCCAAAGCGGGACAGCGCGGCCCAGAGCTCTCTGCACGCCTTTGCACGAGAC
GCACAGGACGATCCATCCGTCGATGACTCACCACCGCCGCTTGATGCGAGCAA--------AATAAAGCCGTTGGCATGC
GGACACGGCCCGGCTCGTCACCCCGTGGCAAGGACACTGGCGCACGGTCGCACGCCGACGCGTCCAGAGACACCTCCAGG
----------------GGGCGAACGAACGGCTCGATGTGGGTTTGTGTGGCCGGTGTTCGCCGATAAAAAGGG-GCCGCG
CTCGGGAGCTTGACCGCACTGCAC--ACTACTAACACTCTCCACTCTCCCACGCCACGCCGACTAGCTTCCTCCGTTCTC
CTCCTCAT---TTGCTTGCCCGGACCTCGGCGAGGCGTCGGCGAGAGAGCTCGACCTCAAGCTCCCTTCCGCTGCTGCAA
TGGCGGCCCCTCTGGTGCTCATCCTCTTGGTCGCCATGTTCACCGGCTCAGGTCAGCGGCCCCAATCCCCACAGCTCGCT
CTGCGCAAACATAGTAGTTTTGCCTGC-CTAGATTGAGTTCCTAGGTTTCTTTCTTTTCCATTAACTCCCCAGGCCTGAA
TCCTTTTGTTCT---AGCACTTCTTGAAGGTGCTTTGGACA---TCTAACAAACTTTCCTT----GTATCTTCTTGAAAA
CTTTTGTCTCTAGACTAGATCAGAGA----------TGTTCTTGCTATTTGTGCCTGGTTTTCTCCATCCTCCAGAACTG
-------TAGAACAAGAAATATTTATTTCCTTGCTGCTG--------GATTCGAGAGCTTATTGTTGTTTGGTTGGTGAC
C-------TAGCAGATGCGATGTACTGCGTGTGCAAGTCGGACGCGAACCCGGTGGCGATGCAGAAGGCCATCGACTACG
CGTGCGGCAAGGGCGCCGACTGCACCCAGATCACCTCCAGCGGGCCCTGCTTCCAGCCCTCCTCCGTCGTCGCCCACTGC
TCCTACGCCTGCAACAGCTACTACCAGAAGAACGCCGGCATGGGCGCCACCTGCGACTTCATGGGCGTCGCCACCCTCAC
CGGCGCCGACCCCAGCGCCGGATCCTGCAAGTACCCCGCCAGCGCAAGGTTAACCCCCATCTG-----------------
---CCCACATGCCTCCCTCACATGTTTGTTTGGCCTCGAACATGCTTACTACTCTACTAGATCAGTGAAACTGTTTAATA
ATAGATTTACGGGCATTTCCCTTTTAATACTCCTGATTGGAG-----TACGTGAATCTGGGAAGTAGTATATCT------
-TAACCGAGATGCAGTATGGCCT----CTGACTGCCCCTGACTGGTGTCATGGGTCGCTGGGCATAGTTTACTTGGTG--
---TTATTAGTGTGCCGTAATCTAGATTCTTCACACGGCCGCACATGAGCCACGTACACACATGATAGTTAATTCAACGT
GCCGTAATCTAGTTCAGGGTTCATGGTTACCAGAGTTACCGAGTAGTACTACCAGCATTCTGAAGTGTGTAGTA--ACCA
TGTTTCAGCTTGCAATATACCAACACAAAGTTGATCTGAAAAATCATTTGCAAAAGCTGTCAAAGCAGATTCGTGGAATA
TGTGCCGCGCCCACTAATGACAGACGAATATTACAGTACATCTGCAGCTAAACAACATA---TGCATCTACACA---TAG
TAGTACCACTACTGATGAACACTCTAGTAGCTGGA--TGTTCTCCCTTT--GCTACTGTTCTTGAGTTCTTGCTTTTGCC
CATGTGAAGC-AAAAGGTGTCTGAATCGGATATTTCTAGTCCGACCTTAAAGGGCGGTCCATCTTTTGCCGAATGCCACC
CGTTCAAAGTTGCATTGAACTTGGGCAAGCGCGTCGGCATCATTGCATCTGCATTATATATGCAATAGATAGATTCTAAG
CAACTTTCTCGCTATTTTGAAGATGGGACATGTGAGACATTTCACCGTGCAATGTAC----TG-----ACCGACGATGTA
CGTGTGCGCTTTGTGTACGTTTCTTTCTTTCTGCAGCGGCGT------------A------GGCACCGGCGGCATGGGAA
CCGGCGGCACAGGGACAGGTACCGGCGGCATGGGAACCGGTACAGGAACCAGCACCGGAGCGGGCACGGGCGTCGGCACC
GGCACCAGCACCGGCGGCATGGGAAGCATGACCCCGCCGGGCGCGACCAGCACCGGGATGCCGGGAAGCCCCTTCGGCGG
CGGCGCGTACGGCCCATC---CATGAACCAGGACTACAGCGCAGCCGTGGTCGGTCGCCGCGTGGCCGCCGCGGGGCTCC
TCGTGGCGGCAGCCGCGCCGCTCCTCCTCCACTTCATCTGATGCGCTGGCGACCACTGGTTGGCTGGCGGAAAGGCGCGT
CGGCAATGCTGGCGGGTGCGACGCCGGATTCGGTGGGCGCGG--CCGCCGCTTTTGT-----GCCCGTTGGCTCGCTCGC
CTGCCTTTCCG------GCGTCGTTTTGAT-GTTCGATCGGACGTACC---AGTAGCCTAGTGTCTGTCTGTCTGTCCAT
GAGTAC---T---ACTCTTATTAAGCTGACCACCCCATGTGGTGTTTGTACCGGTGCGGGTCGTGGTAGAGTTGATGAGA
TCTGGTAGGGAATTCTTTCTTCCTTCTCGTAGCGGTGACGGTGTTCCGAGACATATAATTATGTGTTGTCGTTCCAACTT
CGTCTGTTTCCATGCCACTTTTGTGCCGCTAGCTCATGATCGTGGTGGCGTGTCTCGTGTT-GTCTTTGGCGCTGGGCCG
GTCGGTCACGGCTTCGCATCATCAGGTCGA-----CCCGCCCACGATGCCATGATCC----------------GTGTGAG
CATGCACGGTGGAGTTTTGGGGGTTTGCGGTGCGCCGCGCTGCGGCGGCACATGGAGCTTGGACGGATGTCGGGCAAGGA
AAAATATCGCCGCGATCGA--------------GGTCTGGTGCTCGGAGCCAGAGCGCAGAGTCCACTTTGATCTGGACT
CTTGTCTGTGGCGCGCACTACTGTAT----CTCGAGCGAGCGGAACACGCCGACACCGACACAGGAAAGGCTCACGAGGC
GCCCCACTGTGC---CTCTGATCTCCTCGGGGGCCGCGCGGTTCATGACGGGACCAGCCGCGGGCGCAGCCAGGTGCGGG
CACGGGATTGGGGGTACCAGGCGGTGGTCTTCGGCGCGGTCTGGGCCAACGCATGGATCCACGAGCATGGTTTGGGCCTC
ACGGGCCCTTGTGCTCGCCGCTCGTTGAGCGTGGGCTGGTGTTGTGCCTTGGAGGTGGCACATTTAGCAGTTACATCTTC
TCTTTCGATGCTAAAAAAAAAAGCAGTTACATCTTCTCTCTCAAAAAAAAATCAGTTACATCGGCAC
>chr1D_21
AACAAA---------------------TAACTGTAGTGCCTTTGTCAGCATGTTAGATATAGGTCCCTACCACTCACAAG
GAACAAGCCATTTTTGCCATGTACACGACGGGCCAGTGCCCAC-------ATGTGAAGGACACACCACACCACGAAGCAA
GAGGACACAGGAAGAGGGTAAACGTCCCATGTGAGAAACACCCAGAAAACGGTCGAC---GCAGGCCATGTGAGAGCACC
GATCATACGGGGAAACAAAAGCGAGCGCAAAAGCACCTCACTCCCCAGCAAGATCGACGTCAAGCCACGCTGGAGTAGTG
CAGAATCTAGTA--GTAATAAAAAGATATATGTCAC-----------AAAAAATAAAGAGCAACAAGTAC--CATCCGAC
CGTTAATCCGCACTGCCGACTGGCCGTCACCACTCACTTTAT-TTTTTGACAGTGGCTCACCACCGCATGCACACTGCGC
GAGTAGTAGT-AGTAGTACT-GGTTTGGTGGAGAAATAAAGCCGTCCCGGCCGAGCGCA---------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------GCGCAGCAGCACAGTGCCGCATGCCCGCCGCATCGG
CTCTCTCCCA-------TGCCATGCCGCGCCAAAGCGGGACAGCGCGGCCCAGAGCGCCCTGCACGCCTTTGCACGAGCC
GCACAGGACGATCCATCCGTCGATGACTCACCACCGCCGCTTGATGCGAGCGA--------AATAAAGCCGTTGGCATGC
GGACACGGCCCGGCTCGTCACCCCGTGGCAAGGACACTGGCGCACGGTCGCACGCCGACGCGTCCAGAGACACCTCTAAC
TCCACCTCCAGGGGGCGAGCGAACGAACGGCTCGATGCGGGTTTGTGCGGCCGGTGTTCGCCGATAAAAAGGG-GCCGCG
CTCGGGAGCTTGACCGCACTGCAC--ACTACC-ACACTCCCCACTCTCCCACGCCACGCCGACTAGCTTCCTCCATTACC
CTCCTCCT---TTGCTTGCCCAGACCTCGGCGAGGCTCCGGCGAGAGAGCGAGAGCGAAAGCTCCCTTCCGCTGCTGCAA
TGGCGGTTCCTCTGGTGCTCATGCTCTTGGTCGCCATGTTCACCGGCTCAGGTCAGCGGCCCCGACTA------CTGGCT
CTGCGCAAACATAGTAGTTTTGCCTGC-CTAGATTGAGTTCCTAGGTTTCTTTCTTTTCCATGCACTCCCCGGACCTGAA
TCTTTCTTGCTCTAGAGCACTTAAT-------------------------AAACTTTCCTT----GTATGTTCTTGAAAT
CTTTTGTCTCTAGA-----TCAGGGA----------TGTTGTTGCTATTTGTGCCCAGTTTCCCCCATTTTTCTCCATAG
CTGTAGATAGAAGAAGAAAGATTTATTTCCTTGCTAGATATAGATTCGATTCGAGGGCTTATTATTGTTGTTTGTGTGAC
TGGTGAGGTAGCAGATGCGATGTACTGCGTGTGCAAGTCGGACGCGAACCCGGTGGCGATGCAGAAGGCCATCGACTACG
CGTGCGGCAAGGGCGCCGACTGCACCCAGATCACCTCCAGCGGGCCCTGCTTCCAGCCCTCCTCCGTCGTCGCCCACTGC
TCCTACGCCTGCAACAGCTACTACCAGAAGAACGCCGGCATGGGCGCCACCTGCGATTTCATGGGCGTCGCCACCCTCAC
CGGCGCCGACCCCAGCGCCGGATCCTGCAAGTACCCCGCCAGCGCTAGGTAACCA--CCCTCCCATCTACTACTACTTGT
ACTCCCACATGCCTCCCTCACATGCTTGCTTGGCTTGGAGCATGCTTACTACTCTACTAGATCAGTGAATCTGTTTATTA
AAGGATTTGGGGGCATTTCCCTTTTAATACTCCTGATTCGTG-----TACTTGAATCTGGGAAGTAGAGCATCT------
-TAAGCGAAATGCGGTATGGGCTCTGACTGACTGCCCCTGACTGGTGTCATGAGTCGCTGCGCATAGTTTACTTGGTG--
---TTATTAGTGCGCCGTAATCTAGATTCTTCACACGGCCGCACATACACCACGTACACACATGATAGTTAATTCAACGG
GGCCTTG-CTAGTTCAGGGTTCATGGTTACCAGAGTTACCGAGCG---CTACCAGTATACTGAAGTGTGCAC---TACCA
TGTTTCAGTTTGCAATATGCAAACACAAAGCTGATCTGAAAAATCATTGGCAAAAGCTGTCAAAGTAGATTCGGGGAATA
TGTGCCGTGCCCACTAATGATGCACGAATATTACAGTACATCTGCAGCTAAACAACATA---TGCATCTTCACA---TAG
TAGTACCACTACTGATGAACACTCTAGTAGCTGT--GTGTTCTCCCTTT--GGTACTGTTCTTGAGTTCTTGCTTT-GCC
CATGTGAAGC-AAAAGGTGTCTGAATCGGATATTTCTAGTCCGAGCTTAAAGGGAGGTCCATCTTTCTCCGAATGCCACC
CGTTCAAAGTTGCATTGAACCTGGGCAAGCGCGTCGGCATCATTGCATCTGCATTATATATGCAATAGATAGATTGGAAG
CAACTTTCTCGCTTTTCTGAAGATGGGACGTGTGAAACATTTCGCCGTGCAATGTACTGACTG-----ACCGACGCTGTA
TGTGTGCGCTTTGTGTACGTTTCTTT----GTGCAGCGGCGTCGGCACTGGAGCAGGCACCGGCACCGGCGGCATGGGAA
CCGGCGGCACAGGGACAGGCACCGGAGGCATGGGAACCGGCACCGGAACCAGCACCGGAACGGGCACGGGCGTCGGCACC
GGCACCAGCACCGGCGGCATGGGGAGCATGACCCCGCCGGGCGCGACCAGCACCGGGATGCCGGGGAGCCCCTTCGGCGG
CGGCGCGTACGGCCCGTCTGGCATGAACCAGGACTACAGCGCAGCCGTGGTCGGTCGCCGCGTGGCCGCCGCGGGGCTCC
TCGTGGCGGCAGCCGCGCCGCTCCTCCTCCACTTCATCTGATGCGGTGGTGACCACTGGTTGGCCGGCGGAAAGGCGCGT
CGGCAATGCTGGCGGGTGCGACGCCGGATTCGGTGGGCACGCCCC-GCCGCTTTTGTGTCCGGCTCG----CTCTCTCGC
CTGCCTTTCCGGCGTCTGCGTCGTTTTGATGGTTCGATCGGACGTACC---AC---------------------GTCCAT
GAGTGCTAGT---ACTCTTATTAAGCTGACCACCCCATGTGGTGTTTGTACCGGTGCGGGTCGTGGTAGAGTTGATGAGA
TCTGGTAGGGGATTCTTTCTTCCTTCTCGTAGCGGTGACGGTGTTCCGAGACATATAATTATGTGTTGTCGTTCCAACCT
CGTCTGTTTCCATGCCGCTTTTGTGCTGCTAGCTCATGATCAC-----CGCGTCTCGTGTT-GTC-TTGGCGCTGGGCCT
GTCGGTCACGGCCTCGCATCATCTGGCCGTCCCACC-------CGATGCCATGCTCCGTCTTGAGCTTGTTTTGTGTGTG
CATGCACGGTGGAGTTTTGGGGGTTTCCGG----------TGCGGCGGCACATGGAGCTTGGACGGATGTCGGGCAAGGA
GAAATATCGCGGCGATCGAGGTAGGGAGGGAGGGGTCTCGTGCTCGGAGCCAGAGCGCAGAGTCCACTTTGATCTGGACT
CTTGTCTGTGGCGCGCGCACTACTGTACTCCTCGAGCGAGCGGGACACGCCGACACCGACACAGGAAAGGCTCACGAGGC
GCCCCACTGTGCTGCCTCTGATCTCCTCGGGGGCCGCGCGGTTCGTGACGGGACCAG-CGCGGGCGCAGCCAGGTGGGGG
CACGGGAGTGGGGTGCGGGGGCGGTGGTCTTGGGCGCGGCCTGGGCCAACGCATGGA-----------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------
>chr1A_21
AACAAA---------------------TAACTGCAGTGCATTTGTAAACATGTTAGACATAGGTCCCTACCACTCACAAG
GAACAAGCCATTTTTGCCATGTACACGACGGGCCAGTGCCCACTGCCCACATGTGAAGGACACAGCAAACCATGAAGCAA
GAGGACACAGGAAGAGGGTAAACGTCCCATGTGAGAAACACCCAGAAAACAGTCGACGCATCAGGCCATGTGAGAGCACC
CATCATACGGGGAAACAAAAGCGAGCGCAAAAGCACTTCACT----------------GTCAATCCACGCTGGACTAGTG
CAGAATCTAGTA--ATAAAAAGATGG-------------------AGCAAAAATAAAGAGCACCAAGTACACCATCCGAC
CGTTAATCCGCACTGCCGACTGGCCGTCACCACTCGCTTT--ATTTTTGACAGTGGCTCACCACCGCATGCACACTGCGC
GAGTAGGAGT-AGTAGTACTGGGTTTGGTGGAGAAATAAAGCCATCCCGGGCGAGCGCAGGAGGGCAAATTTTCGTATTT
TGATAAACCTATTCGAGATTTGATCCTATTTTAATTTTTTTCGAGATTTAACCCTTTTGCTACCGTCAGAGTTCATGACG
GTAGGGTCTAATAGCCTACCGCCATAGACTTTGACGGTAGGAAACATTGCTACCGCCAACCGGGCTCTCTGGCGGTAGGG
TTGTGCAGGCTATCGTCAAGGTGCTTTGCGGTAGGCATGAGCACGCAATGTGTTCAATACTTAGGAGTTTTTTTGGCGAT
AGGGCATGCAACCCTACCGTCATGGTCTCTTGCGGTAGCAAAAAAGACAGATCTCAAAAAAAATTCAAACTAAGATCGAA
TCTTAAATATGTTTTAGAAAATGGTCAAAACACGAAATTTAGCCGCGCAGGAGCACAGTGCCGCATGCCCGCCGCATCGG
CCACTCCCAC---------CCATGCCGCGCCAAAGCGGGACAGCGCGGCC-AGAGCTCTCTGCACGCCTTTGCACGAGCC
GCACAGGACGATCCACCC----ATGACTCACCACCGCCGCTTGATGCGAGCGAGCGAGCGAAATAAAGCCGTTGGCATGC
GGACACGGCCCGGCTCGTCACCCCGTGGCAAGGACACTGCCGCACGGTCGCACGCCGACGCCTCCAGAGACACCTCCACC
TCCACCTCCAGGGGGCGGGCCAACGAACGGCTCGATGCGGGCTTGTGTGGCCCGTGTTCGCCGATAAAAAGGGTGCCGCG
CTCGGGAGCTTGACCGCACTGCACACACTACC-ACACTCCCCACTCTCCCACGCCACGCCGACTAGCCTCCTCCGTTCCC
CTCCTCTCTTCTTGCTTGCTCGGACCT-----------CGGCGAGAGAGCGAGAGCGAAAGCTCCCTTCTGCTGCTGCAA
TGGCGGTTCCTCTGGTGCTCGTGCTCTTGGTCGCCATGTTCACCGGCTCAGGTCAGCGGCCC----------AGCTCGCC
CTGCGCAAACATAGTAGTTTTTGACCGTCTAGATTGAGTTCCTAGGTTTATTTCTTTTCCATTCACTCCCTGGACCTGAA
TCTTTCTTGCTCTAGAGCACTTCTTGAATGTCCTATGCAACATCTCCAACAAACTTTCCCTTGTAGTATGTTCTTGAACT
GTTGCTGTCC----CTAGATCAGAGATGCTAGATGGTGTTCTTGCTATTTGTGCCTAGTTTTCCCCATTCTCCGTAACTG
-------TAGAACGACAGAGATTTATTTCATTGTCAGATTCGTGAGCTAACC---GGCTTATTATTGCTGTTTGAGTCGG
TG-------AGCAGATGCCATGTACTGCGTGTGCAAGTCGGACGCGAACCCGGCGGCGATGCAGAAGGCCATCGACTACG
CGTGCGGCAAGGGCGCCGACTGCACCCAGATCACCTCCAGCGGGCCCTGCTTCCAGCCCTCCTCCGTCGTCGCCCACTGC
TCCTACGCCTGCAACAGCTACTACCAGAAGAACGCCGGCATGGGCGCCACCTGCGACTTCATGGGCGTCGCCACCCTCGT
CGCCGCCGACCCCAGCGCCGGATCCTGCAAGTACCCCGCCAGCGCTAGGTTAATAGCCCCTCCCATCTATGCTCTTCCTC
C-----------------CACATGCTTGCTTGGCTTAGAACATGCTTACCACTCTACTAGATCAATGAAGCTGTTTAATA
ATAGATTTACTGGCATTTCCCTTTTAATACTCCTGATTGGATTGGACTACTTGAATCTGGCAAGTATACAGAGTATCTTA
ATAAGCGAGATGCAG--------------GACTGCCCCTGACTGCTGTCACCAGTCGCTCGGCATAGTTTACTTGGGTTA
TTCTTATTAGTGCGCCGTAATCTAGATTCTTCACACGGCCGCACATACACCACGTACGCACATGATAGTTCATTCAGCTA
GGTGAGTTACCAG-------------------------------------ACCTGTATACTGAAGTGCGTAGTAGTACCG
TGTTTCAGCTTGCAATATGCAAACACAAATCTGATCTGAAAAATCATTGGCAAAGGCTGTCAAAGTAGATTCGAGGAATA
TGTGCCGTGCCCACTAATGATGCACGAATATTACAGTACATCTGCAGCTTAACAACATAGTATGCATCTTCACATGGTAG
TAGTGCCACTGCTGATGTCCGCTCTAGTAGCTGGACGTGTTCTCCCTTTGGGCTACTGTTCTTGAGTTCTTGCTTT-GCC
CATGTGAACCAAAAAGGCGTCTGAATCGGATATCTCTAGTCCGACCTTAAAGATACACCCGTCTTTCGCCGAATGCCACC
CGTTCAAAGTGGCATCGGACCTGGGCAAGCGCGTCGGCATCATTGCATCCGCATTATGCAATAGATAGATAGATTCCAAG
CAACTTTCTCGCTTTCTTGAAGATGGGACGTGTGAGACATTTCGCCGTGCAATGTAC----TGTACTGACGGACGCTGTG
TGTGCGCGCTTTGTGTATGTTTCTTTCCTTGTGCAGCGGCGTAGGCACCGGAGCA------GGCACCGGCGGCATGGGCA
CCGGCGGCACAGGGATGGGCACCGGCGGCATGGGCACCGGCACAGG---CAGCACCGGGACAGGCACGGGCGTC------
------AGCACCGGCGGCATGGGGAGCATGACCCCGCCGGGCGCGACCAGCACCGGGATGCCGGGGAGCCCCTTCGGCGG
CGGCGCGTACGGCCCGTCGGGCATGAACCAGGACTACAACGCAGCCGCCGTCGGTCGCCGCGTGGCCTCCGCCGGGCTTC
TCGTGGCGGCAGCCGCGCCGCTCCTCCTCCACCTCATCTGATGCGGTGGTGACCACTGGCTGGCCG---------CGCGT
CGGCAAT----GCGGGTGCGGCGCCGGATTCGGTGGGCGCGCCCCCGCCGCTTTTGT-----GCCCG----CTCGCTCGC
CTGCATTTCCG------GCGTCGTTTTGATGGTTCGATCGGACGTACTGGTAGCAGCGTAGTGTGTGTGTGTCTGTCCAT
GAGTAC---TAGCACTCTTATTAAGCTGACCACCCCATGTGGTGTCTGTACCGGTGCGGGTCGTGGTAGAGTTGATGAGA
TCTGGTAGGGGATTCTTTCTTCCTTCTCGTAGCGGTGACGGTGTTCCGAGACATATAATTATGTGTTGTCGTTCCAACCT
CGTCTGTTTGCATGCCACTTTTGTGCTGCTAGCTCATGATCAC-----CGCGTCTCGTGTTTGTC-TTGGCGCTGGGCCT
GTCGGTCACGGCCTCGCATCATCAGGGCGACCCACCCCACCCATGATGCCATGCTCCGTGTTGAGCTTCTTTTGTGTGTG
CATGCACGGTGGAGTTTTGGGGGTTTCCGGTGCGGCGCGCTGCGGCGGCACATGGAGCTTGGACGGATGTCGGGCAAGGA
GAAATATCGCGGCGACCGAGGGAGGGTGGC-----TCTCGTGCTCGGAGCCAGAGCGCGGAGTCCACTTTGATCTGGACT
CTTGTCTGTGGCGCACTACTGTAGTACAGTACT----------------CCGACACCGACACAGGAAAGGCTCACGAGGC
GCCCCACCG---TGCCTCTCATCTCCTCGGGGGCCGCGCGGTTGTGGTGGCGAAGAGGCCGCGATGGGATTG---GCGGG
CACGGGATTGG--------------GGTCTTGGGTGCGGTCTGGGGCAACGCATGGATCGAAGAGCAGTCTGGGACTCTC
--------------------------------GGGCTGGTGTTGTGCCTTGGAGGTGGCACATTTAG-------------
-------------------------------------------------------------------
>SNPs
SSS--SSSSSSSSSSSSSSSSSSSSSS-------------------------S---S--------------------S--
--------------------------------------------------------------------------------
---------S--------------S-------------------------------------------------S-----
-------------------------S--S--------------------------------------------S------
------------SS-----S-------S---SSSSSSSSSSSSSS-----------------------------------
---------S-----------------------S-------S-----------------S--------S--SSSSSSS-S
S--SSS-SSSS----S--------------------------------S---S-SSSS--S-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------SSSSSSS-------------------------------------------------------------S-
---------------------------------------------------S----------------------------
------------------------------------------------------------------------------SS
-------------------------------------S------------------------------------------
-------------------------------SS------S--------------------------------------S-
------S-----------------------------SS------------SS--S-SS----------------------
------SS--------------S----------------------------------------S-SSSSSSS--------
---------------------------------------------------------------S-------S-S------
--S--S-SSSSS----------------S--S--S--S-SS-----S----------------------S---------S
--------------------------------------------------------S------S----S----SS-----
-------------------S---------------SSSS----------------S-------S-----SSS-SS-----
S-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------S--------SS--SSSSS-----------------
------------------------S---S-----S-S--------------------------------S----------
--------------------------------------------------S----------------SSS----------
----S---------------S-------------------------------S---------------------------
------------S---------------------------------SSS------------------------------S
-S---SS------------------------------------SSSSS-------S--S---------------------
------------------S-S---------S-----------------S----------------S-------S------
-------S------------SSS----------------------------------------------S----------
----------------------------------------------------------------------------S---
------------------------------------------------------S-----------S-------------
--------------------S-------------------------------------------------------S---
-------------S---------------S-------------S-------------------------------S----
S--------------------------S--S-------------------------------------------------
-------------------S--------------------S------------------S--------------------
-----------------------S-----------------------------------------S--------------
---------------S----------------------------------------------------------------
---------------------------------------------S---S--------------S---------------
-----------------------------------------S-------------------------SSSS---------
-----------------------------------------------------S---S------S---S-----------
--------------------------------------------------------------------------------
----------S-------------------------------------------------------------------S-
--------------------------S--------------SSSSSSS--S--------------S-------------S
------------S-------------S-----------S--------------S------------------------S-
--------------------------S-------S---------------------------------------------
S---------S---------------------------S-----------------------------------------
----------------S-SSS-S-S------------------S------------------------------------
--------------------------------------------S------------S----------------------
-------------SSSSSS------------S---------------------------S-S-----SSS-SS-SSS---
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------------------------SSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_1313
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-------------GACCGCACTGCACACTACTA-----------------------------------------------
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>reverse_2648
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--------------------------------------------------------------------------------
-------CGCCCACTAATGACAGACGA-----------------------------------------------------
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>forward_2142
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------------------------------------------CGCAAGGTTAACCCCCATCT------------------
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>reverse_3787
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--------------------------CGCTAGCTCATGATCGTGGT----------------------------------
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-------------------------------------------------------------------
