>input_sequence_42599
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------------------------------------------------------------------------------AT
GGAAGAGGCAAATCGCCGAGCGACTCGCGCGCCGCC------CAGAAGGTTTGTCTCTTCTCCCCTCCCTCCCTCCCTCT
GCTGCGCCGCCGCTAGGGTTAGCCTGGGCTGCGCCGC--------CGCCTAGACTCCGCGGGACGCGATGCGGTTGCCCT
CCCTCCCTCTGTCGCGGCCAGGAGGGAGGACCGGCGGTGGACGAGTTGCCGAGAGGAGGAGGGCCGCCGGTTGCTCTGCC
ACCCCCGATCTGGAAAAAAAAGGAGCAAGTCCGGCGGCGAAGGAGATGGGGCGAGGTGGCCCGCTCGAGGGAGAGGACGG
CGGATTGGGGG-AGATGCTGCTGCTATTTGTATGGAGGATTGGGGGAGAAGATGGATCAGGGG---------GAGCAGAG
AGTATGGCCTGCTGCATGAGAGAGCAGAGGAGATGCAGTATAGATATGAG------------------------------
--GATTTGCTTGCTGCTTGTGCTGCTGCTTGCTTTGCTTGATACTTTTGTTCGTTTCTCGTTTACTCATTTCTTGGTGAT
CAATTGTTGCA------------------------------------GGAGGATTGGAGCATTGGATTCTGCAATGGACT
CCGTCCTTGAGATCCAGAATCAAGCTAAACAGCAACTCCAGCGTGTAGCAATGGCAGCCGCACCCATTGAAGTTCTCCCA
CCTTGCAAGAGGCAAAAGAAGAACCCCAGTTGTCTGGGAACCTCGCCGGTCCTTCCGGCCACGTCAACTGCAGACTGGTC
CTCACTCCAGCTCGACATAGTCCGCCGCATTGCCGACTCCTTCCTCGCCACCAATGACATTGACTGCTACATGGACTTGC
GCGCTGTCTGCCACAGCTGGCGTTACGCTACCGACGACCCCAAGGAGAATATTTTGGACTACCAGTTCCTTCCGCGCCGA
TGGATCATCCTCGACGAGGTCTTCCAGAGTGGGACGCGCTGCCTCTTGGTCAACACCGCCACCGGCCGAATCCTCCACAA
GGAGCTCCCTCTGCTCTCCGACTACTATATCGTCACCACCACTCTCGACGGCTTCTTCGTCCTTGCCGATAGGAGGCCCC
CTCATGCTGCTCGTGTCTTCAACCCTCTCACTGGTGGCATCATCCCTTTCACGGTGCCC---GTGCCGCCTGAGGTGAAG
GTCACCTGTTCGCTCTGCTTTGAGTTTGCTTCGCCCATGCTCACCTTGCTCTCCAAGTCATGTTGCAAGATA---TACAT
ATCCAGTCCTCACAG---TATCCGCACCGAAAACTTTGAGATTTCACTCTATGGTCTCTTT------CGGAGGGCTGTCA
AAGGTGATTTGGCCGGCCTTTGGTGGCTACCAGCCGGAAGCTCGGAATCAGCCGAAACAGCTGCTGTGAATGCGATTGGC
-AAGATCTCCAATGTTATGAAGTCGCTCCATGTTGACCCGTTGAAGTTCTTTTCTAGTGATCCTCCTGATATGGGGCTTG
CAGACGACACCAAGTGTTTCCTAATGGATTTTGGTGGACAACTGCTGGCCACCATCAAGGGACAAC---TCGTCCAGATT
TTCAGGTACGAAGCGAAGAATGGCGTGCTTTTGCATTTGAAGAGCATCGGCAACCATGCCATCTTCCTTGGTCATCATAA
GTGCCTAGCTGTGGATACTGATATGTTCCCATTGATTGAGGCAAACTGTGTTTACTACACTGAACAACTGGGTTTGTCTG
CTCGTATCCGGAAATGCAACATCAAGGACGAGAAAGTAGAGAGCATCTCGGAAGCCGTTGATTTTGTGAAGCAGGAGAAG
CAGTTTGTCCTCGTTGGCGACCGTCCTTTTACGATCATCCAGCTTCTGGCCAGCTACACCATCAACATACGGGATTCTGA
ACTGGCCTTACATCAGATCACATGA-------------------------------------------------------
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>chr3D_1_TraesCS3D01G459500
AAATCAAAAAAATCTGAGACCTCGTGGATTTGATTATGAGCAAATG-TTTAGAAGCTTGCAAAGTTTGGTCAACAAAAAA
AATAAAATGATCTCAATACAAAACGAAATAGAAATGACGCTCTCGTTCGCATGTTTTTAGCACAAACATTGTATTTTTTT
TGTACAG---ATTGGATGTCATTTCGCTACCAAATTTTACAAGCACCTAAAACATTTCGTCAAAATCACATCCACAAAAT
TTCAGATTTT--TTTATAAATTTTGGTAAG-TTTTTATCGTGGGTGCACTGGTGGTGCA-------------ATGTCCGG
GGTGCAAAAAATCACACTCTTTCGGCGACACAACACCGACGATGACGACTGAAGCTGTGGCCGCTTGGCTCGGTCGTGAT
GGTCGCGCTACTGCCAGCAATAACTCCGGTGGCTAGTAGTTCGTACTCCGTACGGCGGCCACGAGCTGCATCACGGGCGT
CGATGCTCCGGCCAACAGCCGAACCGGTGGAAACATGGCGTGGCGACAAGACCTCCAGCGGCGGGGTTGGGCAGTGGGGT
TAGGGGTGGACGGACAAGCGGCGACCGAAAACTTCCCGAGAGAAATCGCCGGCGGTAGTAGGCGGGTGGATGAGCTGGCA
TGGCGCGGGAATGTTCAGCGTGGTAGTTGGGGCCACGCACGTGAACGGCTGTGTTTTGCTCGAGCCAAACAGGTGATGCA
AATT-GTATCACCAAGTGCCCTATTTTAAATCATGAAGAAAACTCGAGTAAACTTTTTTACGTCTACATCATCT----GT
TGGTGCAGCATTTTTAG---------------------------------------------------------------
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---------------------------------------------------------------------------GTCTT
CATGACGTAAAAATCAATTACTCACTTCCTTTCAGTTTATAGTGCTTTTAAAACGAAAAACCTTAGTTTTTTAGATGAGC
CCTGTAGGTGG---------------------------------------------------------------------
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----------------------------------------------AAATGGAAAGGAAGGAGTATTCTACGTATACATG
TACGTCGTCTATATTGGAGACGCTTAAAAAGACACCATCCCCTGTGCGAGCCAAATTGGCGGAACCTCCTTCCTTTGGAT
GGAAGAGGCAAATCGCCGAGCGACTCGCGCGCCGCC------CAGAAGGTTTGTCTCTTCTCCCCTCCCTCCCTCCCTCT
GCTGCGCCGCCGCTAGGGTTAGCCTGGGCTGCGCCGC--------CGCCTAGACTCCGCGGGACGCGATGCGGTTGCCCT
CCCTCCCTCTGTCGCGGCCAGGAGGGAGGACCGGCGGTGGACGAGTTGCCGAGAGGAGGAGGGCCGCCGGTTGCTCTGCC
ACCCCCGATCTGGAAAAAAAAGGAGCAAGTCCGGCGGCGAAGGAGATGGGGCGAGGTGGCCCGCTCGAGGGAGAGGACGG
CGGATTGGGGG-AGATGCTGCTGCTATTTGTATGGAGGATTGGGGGAGAAGATGGATCAGGGG---------GAGCAGAG
AGTATGGCCTGCTGCATGAGAGAGCAGAGGAGATGCAGTATAGATATGAG------------------------------
--GATTTGCTTGCTGCTTGTGCTGCTGCTTGCTTTGCTTGATACTTTTGTTCGTTTCTCGTTTACTCATTTCTTGGTGAT
CAATTGTTGCA------------------------------------GGAGGATTGGAGCATTGGATTCTGCAATGGACT
CCGTCCTTGAGATCCAGAATCAAGCTAAACAGCAACTCCAGCGTGTAGCAATGGCAGCCGCACCCATTGAAGTTCTCCCA
CCTTGCAAGAGGCAAAAGAAGAACCCCAGTTGTCTGGGAACCTCGCCGGTCCTTCCGGCCACGTCAACTGCAGACTGGTC
CTCACTCCAGCTCGACATAGTCCGCCGCATTGCCGACTCCTTCCTCGCCACCAATGACATTGACTGCTACATGGACTTGC
GCGCTGTCTGCCACAGCTGGCGTTACGCTACCGACGACCCCAAGGAGAATATTTTGGACTACCAGTTCCTTCCGCGCCGA
TGGATCATCCTCGACGAGGTCTTCCAGAGTGGGACGCGCTGCCTCTTGGTCAACACCGCCACCGGCCGAATCCTCCACAA
GGAGCTCCCTCTGCTCTCCGACTACTATATCGTCACCACCACTCTCGACGGCTTCTTCGTCCTTGCCGATAGGAGGCCCC
CTCATGCTGCTCGTGTCTTCAACCCTCTCACTGGTGGCATCATCCCTTTCACGGTGCCC---GTGCCGCCTGAGGTGAAG
GTCACCTGTTCGCTCTGCTTTGAGTTTGCTTCGCCCATGCTCACCTTGCTCTCCAAGTCATGTTGCAAGATA---TACAT
ATCCAGTCCTCACAG---TATCCGCACCGAAAACTTTGAGATTTCACTCTATGGTCTCTTT------CGGAGGGCTGTCA
AAGGTGATTTGGCCGGCCTTTGGTGGCTACCAGCCGGAAGCTCGGAATCAGCCGAAACAGCTGCTGTGAATGCGATTGGC
-AAGATCTCCAATGTTATGAAGTCGCTCCATGTTGACCCGTTGAAGTTCTTTTCTAGTGATCCTCCTGATATGGGGCTTG
CAGACGACACCAAGTGTTTCCTAATGGATTTTGGTGGACAACTGCTGGCCACCATCAAGGGACAAC---TCGTCCAGATT
TTCAGGTACGAAGCGAAGAATGGCGTGCTTTTGCATTTGAAGAGCATCGGCAACCATGCCATCTTCCTTGGTCATCATAA
GTGCCTAGCTGTGGATACTGATATGTTCCCATTGATTGAGGCAAACTGTGTTTACTACACTGAACAACTGGGTTTGTCTG
CTCGTATCCGGAAATGCAACATCAAGGACGAGAAAGTAGAGAGCATCTCGGAAGCCGTTGATTTTGTGAAGCAGGAGAAG
CAGTTTGTCCTCGTTGGCGACCGTCCTTTTACGATCATCCAGCTTCTGGCCAGCTACACCATCAACATACGGGATTCTGA
ACTGGCCTTACATCAGATCACATGAGGTGCTGATAAACTGGATGATCTGACC--------TATGGTATGCATTGCTAAGA
ATGGGTTCCTGTTTTGTTGCTTTGGTTAAGCGTTGATTTGTTCCGGGCAAGAAACGGATTGAATCT-AGGCTGTATCTTC
TATGATGGAATTACTGTCTACTACCTTATGTCCTCCACTGTTTAGCTTTATGCTA----GTGTGCAATGTGGTTCTTAAT
TTCTTCAGTAGATAATGTCAGCTCAACCTGTCCCCCCTTTTATGTATTTAGCTTTGCAACTGAATCTTTGAAAATGTGTC
ATGCCTCATTGTTCTCTATGATGTTTCTAATATTGCAATATTTT-GTCTAGGCAAGAAACAGGTTTTAGATATGCTTACC
AGTGGTTTGTGGAACTACTGTATGTCGCGTC-------------------------------------------------
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-------------------------------------------------------TATTATTTTTCGAATGCTTCCTAGT
GTGTACGCTTGTACCACATGTACTGTTTGCTTTCGTAATTTCTTCTTCAAACAAAGTATGTTGCAGCTCACCATTGCTGC
CCTTACAAACTAAGATGTGTGTTGTAGCTCACCATTGCTGCCAAGAACTTAAGGCAGGCTTTACAGATAAAAATTAATGA
TGGAATTTTTAGTTGCTGTTTCTAGATGGGGTTTTGTAGGTTTAGCTGTTCACATACTTTTGTCGGGAATGACGGTGTTT
TACTATTACTTCTTCCGTTCCTAAATATAAGTATTTTTAGAGCCAATGTGAACTACATACGGAGCAAAATGAGTGAATCT
ACACTCTAAAATATGTCTATATACATCCGCATGTAGTCTTTATTGAAATATCTAAAAAGACTTATATTTAGGAACGGAGG
GAGCACATGCATAGACCGTGTCTTGCATGTTCATAAGATGCATGTGTTGATTGGATCATCCTATGAAACAGAGTTGTTGA
GAATGAAGCTTGTTTGGTCATGGAGATGTAACCAATCACTTTGAACTCCTCCTGAAAGCATGCTGGTAATATGCACCACT
AATAATACAACGGCCTACAGTTT
>chr3A_1
AAATAAAAAAAATCTAAAACTTCGTGGATGTGATTATGAGAAAATGTTTTAAAAGCTTGCAAAGTTTTGTCAACAA-AAA
AATAAAATGATCTCAATACAAAACGAAATAGAAATGATGCTCTCGTTCACATGTTTTTAGCACAAATTTGTTTTTTTTTG
TACAAAGCTCATTGGATGTCATTTCGCTACCAAATTTTGCAAGCACCTAAAACATTTCGACAAAATCACATCCCAAAATT
TGCAGATTTTTTTAATA----------AATTTTTTGACCGTGGGTGCACTGGTGGTGCA-------------AAAACC--
------------CACACTCTTTCGGCGACACAACACCGACGATGACGACTGAAGCTGTGGCCGCTTGGCTCGGTTGTGAT
GGTCGCGCTACTGCCATCAATAACTCTGGTGGCTAGTAGTTCATACTCCGTACGGCGGCCACGAGCTGCATCACAGGCAT
TGACGCTCCGGCCAACAGCCGAACTGGCGGAAGCATGGCGTGGCGATGAGACCTCCAGCGGCGGGGTTGGGCAGTGGGGT
TAGGGGTGGACGCACAAGCGATGACCGAAGACTTCCTGGGCGAAAACACTAGCGGTAGTAGGCAGGTGGATGAGCTAGCA
TGGTGCGGGAATGTTCGGCGCGGTAGTTGGGGCCACACACGCGAGCGGCTGTGTTTTGCTAGAGCCAAACGGGTGATTCA
AATTTGTTGGAATTTTGCTAGTAGGCCTTGTGGTCCAAAGCCTAACTAAAATTTTGAAATTCCCTTGGTCCATTCATGCA
CACATGTGAGTGGAGTGAGTGAGGCTAAAGTTTAGTCCCACCCCGGAAGTTGAGAGAGAGTTGCGCATCTTTATAAGGTG
AGCTTTTCTACCACTTGTATGAGCATGAGAAGAGGAGACCTACTCGTTCGCCTCGCCTCGCCTCATCACGACGCGCCGCG
CCGCGGATTGCGGGATTGAGCCGAGCCGAGGACAGAGCTATGCACGTTGAGCCGAGGACATATAGAGGGGCGATCAGGTT
TTTGGGGAGCGCACTCGCGCAACGACTTCTTCCCCGACCTCGGCAACCTCATCCTCGGCGACATGGGCGACAACGTTAAC
ACCGGCGGTGCTGCTCCCGCTGCACCGTATGTGATTCTATCCTTCATGTTCGAGATCGTGGTAGAATTCATGTTTGTCTT
CATGAGGTAAAAATCAATTACTCCCTTCCTTTTAGTTTATAGTGCTTTTAAAACGAAAAACCTTAGTTTTTCAGATAAGC
CGTGTAAGAGCATCTCTAGCAGACCCCGTGTAATGCCGATCCGCAAAATGCACTTATAGTTCGCTGCAGATGAGATTTGC
GGGTCGAATTCATGCGCTGCGGATCAGCCCCCTATATGAAACTGTAAAATTTAAAAAAAAGCATTCGCCTGAGAAACTTG
CAACGACATTGATCATACATTAATTTATCTACATACTACATTGATCATACATAGTTCATCTACATTGATCATACTAGTGG
GGAAATCTACAGGCCCGAGCCTAGCTACAGAAAATCGACGAGCTTGCGGAGGCAACGACGCGGTGGAGGAGCCAGAGGAG
CTCAGTCCTCGTCGAAGGAGTCGAGGTCGATGAAGAACTTGGCCTGCTCCGCCTTCATGACGCACAGGTCCGCCTCCTTG
GACGCGTGCGCCTGCGACGCCGCGATGCCCGTCTGGAGGAACATCTGCTCGTACTCGAGCTCGCGGCGGCAGCCGCGAGC
TCGCGCTCGTACTCGACCATCTCGCACCGTTTGAACGTCGACGGCGGCCGGCTTCCGTGGTTGAGCCACCTCCGCGCGCC
CCGCTTGCGTACGGCGTCGAATCTAGTGCGGTGGCGGCGCTCCGCGTCATCCCCAGAGCTCCCGTAGCCATCCATGGCTT
TTTTAGGCTCGCCGGTGGCGAGATATTGGGCGGAGGAGGGGAATCATGGCGGAGCAGTGGCGGAGGCGGATAGGGTTTGA
CCCGTATCCGAGCGGCGAAATCGTATAATAGCGGTGGGGAGAGTGTTTTTGTGGGCCGCGTTAAAAATTTTACAGGCCAG
GCCGCGGATACGGTGTCTATTCTGACGAGAGAAACGAGCCGAACCCGTATACTCGCCGGAATTATACGAGTTCAGTTTTT
TTTTGCGTAGTAATACGTGTCTCATTAATAAAATAAAGATTCACTTACAGGCCATGTAAACATCAACATTACATGACTGA
AAAGATAAGATAACCTATGTAAAAGAAAAACTAGCACATGTTCCTCTCCACTAAAAAAAGAAGACAGCATCACCTTTTCA
CTCGAGCTCGTTCTATCTTTTTTATGGGGTCGGCTAGAGATGCTCTAAGTGAAAAGGAGGGAGTATTT---GTATAAATC
TACGTCGTCTATATTGGAGACGCTTAAAAGGACACCATCCCCTGTGCGTGCCAAATTGGC-GAACCTCCTT----CCTTT
GGAAGAGACAAATCGCCGAGCGACTAGCGCGCCGCC------CACAAGGTTTGTCTCTTCTCCCCTCCCTCC--CTCTCT
GCTGCGCCGCCGCTAGGGTTAGCCTGGGCCGCGCCG--------TCGCCTAGACTCCGCGGGACGCGATGTGGTTGCCCT
CGCTCGGTCA----CGGCCAGGAGGGTGGACTGGCGGTCGACGAGTTGCCGACCGAAGGAGGGCCGCCGCTTGCTCTGCC
ACCCCCGATCTGGAATAGAAGGGAGCAACTCCGGCGGCGAAGGAGATG--------------------GGGAGAGGACGG
CGGATTGGGGGCAGATGCTGCTGCTATTTGTATGGAGGATTGGGGAAGAAGATGGATCTCTGTTT---GGGAGAGCAGAA
AGGATTGCCTGCTGCATGAGAGAGCAGAGGGGATGCAGTGTAG------------------TGTAGATATGAGGATCTGC
TTGATTTGCTTGATGCTTGTGCTGCTGCTTGCTTTGCTTCATACTTTTGTTCGTTTCTCGTTTGCTCATCTCTTCTTAAT
CAACTGCTGTGA-TTCTTACAACTTGTGTCCTTTGTCCCTTTTGCAGGGAGGATTAGGTTATTAGATTCTGCAATGGACT
CCGTCCTTGAGATCCAGAGTCAAGCGAAGCAGCAACTTCAGCGTGCAGCAATGGCAGCCGCACCGGCTGAAGTTCTCCCG
CCTTGTAAGAGGCAAAAGAAGAACCCCAGTTGTCTGGGAACCTCCGCCGTCCTTCCGGCCACGGCGACTGCCGACTGGTT
CGCGCTCCAGCTCGACATAGTCCGCCGCATCGCCGACTCCTTCCTCGCCACCAATGACATTGACTGCTACATGGACTTCC
GCGCCGTCTGCCACAGCTGGCGTTCCGCCACCGACGACCCCAAGGACAACATTTTGGACTACCGGTTCCTTCCGCGCCGA
TGGATCATCCTTGACGAGGTCTTTCAGAGTGGGACTCACCGCCTCTTGGTAAACACCGCCACCGGCCGAATCCTTCACAG
GGAGCTCCCGCTGCTCTCCGACTACTATATCGTCACCACCACTCTCGACGGCTTCTTCGTCCTGGCCGATAGGGGCCCCC
CTCATGCTGCTCGTGTCTTCAACCCTCTCACTGGTGGCGTCATCCCTTTCACCGTGCCC---GTGCCGCCTGAGGTAAAG
GTCACCTGTTCGCTCTGCTTTGAGTTTGCTTCGCCCATGCTCACCTTGCTCTCCAAGTCATTTTGCAAGATA---TACAC
AGCCAGTCCTCACAG---TATCCGCACCGAAGACTTTGAGATTTCACTCTATGGTCTGTTT------CGGAGGGCGGTCG
AAGGTGATTTGGCCGGCCTTTGGTGGCTACCAGCCGGAAGCTTGGAATCAGCCGAAACAGCTGCTGTGAATGCGATTGGC
-AAGATCTGCGATGTGATGAAGTCGCTCCATGTTGACCCGTTGAAGTTCTTTTCTGGTGATCCTCCTGATATGGGGCTTG
CAGACGACACCAAGTGTTTCCTAATGGATTTTGGTGGACAACTGCTGGCCACCATCAAGGGACAAC---TCGTCCAGATT
TTCAGGTACGAAGCCAAGAATGGCGTGCTTTTGCATTTGAAGAGCATCGGCAACCATGCCATCTTCCTTGGTCATCATAG
GTGCATAGCTGTGGATACTGATATGTTCCCATTGATCGAGGCAAACTGTGTTTACTACACTGAACAACTGGGTTTGTATG
CTCGTATCCGGAAATGCAACATCAAGGACGAGAAAGTAGAGAGCATCTCGGAAGCCGTTGATTTTGTGAAGCAGGACAAG
CAGTTTGTCCTCGTCGGCGACCGTCCTTTTACAATCATCCAGCTTCTGTCAAGCTACACCATCAACATCCGGGATTCTGA
ACTGGCCTTACATCAGATCACATGAGGTGCTGATAAACTGGATGATCTGGCC--------TATGGTATGCATTGCTAAGA
AAGGGTTCCTGTTTTGTTACTTTGGTTAAGCGTTGATTTGTTCCGGGCAAGAAACGGATTGAATCT-AGGCTGTATCTTC
TATGATGGAACTACTGTCTACTACATTATGTCCTCCCCTGTTTAGCCATATGCTATCTTGTGTGCAATGTGGTTCTTAAT
TTCTGCAGTAGATAACGTCAGCTAGACCTTTCCCCCTTTTTATGTATTTTGCTCTGCAACTGAATCTTTGAAAATGTGGC
ATGCCTCATTGTTCTGTATAATCTTT------------------------------------------------------
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>chr3B_6
-----AAAAAAATCTGAAAATTCGTGAATGTGATTATGAGCAAATGTTTTGGAAGCTTGCAAAGTTTGATCACCAA-AAA
AATAAAATGATCTCGATTCAAAACGAAATAGAAATGGCGCTCTCATTCACATGTTTTTAGCACAAACTTTGTTTTTTTTT
GCAAAGCTCA--TGAATGTCATTTCTCTACCAAATTTTACAAGCACCTAAAACATTTCGTCAAAATCACATCCACAAAAT
TTCAGTTTTTTTTTTACAAATTTTGCTAAGTTTTTAATCGTGGATGCACCGGGGGCGCAATGTCCAAGGTGTAAAAAC--
------------CACACTCTTTCGGCGACACGATGCCAGCGACGACGACTGAAGCTGTGGCCGCTTGGCTTGGTTCTGAT
GGTCGCGCTCCTGCCAGCAATAACTTCGGTGGCTGGTAGTTCATACTCCGTACGGCGGCCACGAGCTGCATCACGGGCGT
CGACGATCCGGCCAACAGTCGAACCGGTGGAGACATGGCGCGGCGACGAGACCTCCAGCGGTGGGGTTGGGCGGTGGTGT
TAGGGGTGGACGGACAAGCGATGACCGAAGGCTTCCTGGGTGAAATGGCCGGCGGTAGTAGGCGGGTGGATGAGCCGGCA
TGGCGCGGGAATGTTCAGCGGGGTAGTTGGGGCTACGCACGCGAGCGACAGTGTTTTGCTCGAGCCAAACAGGTGATGCA
AATTTGTATCACCAAGTGCCCTATTTTACATCGTGAAGAAAAATTGAGTAATTTTTTTTACATCTACATACATCATCCGT
TGGAGCAGCATTTTTAG---------------------------------------------------------------
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---------------------------------------------------------------------------GTCTC
CGTGAGGTAAAAATCAATTACTCCCTTCCTTTCAGTTTATAATGCTTTTAAAACGAGAACCTGTAAGCGGAAAGAGGGAG
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---------TATATCGGAGACGCTTAAAAAGACACCATCCCCTGTGCGTGCTAAATTGGC-GAACCTCCTTCCTTCCTTT
GGAAGAGGCAAATCGCCGAGCGACTCGCGCGCCGCCGCCGCCCAGAAGGTTTGTCTC---TCCCCTCCCTCCCTCTCTCT
GCTGCGCCGCCGCTAGGGTTAGCCTGGGCTGCGTCTTCGGCTCTTCGCCTGGACTCCGCGGGACGCGGTGTGGTTGCCCT
CCCTCGCTCTGTCGCGGCCAGGAGGGAGGACCGGCGGTGGAGGAGTTGCCGAGAGGAGGAGGGCCGCCGCTTGCTCTGCC
GCCCCCGATCTGGAAAAAGAAGGAGCAACTCCGGCGGCGAAGGAGACGGGGCGAGGTGTCCCGCTCGACGGAGAGGACGG
CGGATTGGGGG-AGAAGATCT--------------------------GAAGATGGATCAGGGGACTAGGGGAGAGCAGAG
AGGATTGC------CATGAGAGAGCAGAGGGGACTAGGGGAGAGCAGAGAGGATTGCCTGCTGTAAATATGAGGATCTGT
TTGATTTGCTTGATGCTTGTGCTGCTGCTTGCTTTGCTTGACACTTTTGTTCGTTTCTCGTTTGCTCATTTCTTGGTGAT
CAATTGTTGCCATTTTTTACAACTAGTGTCCTTCGTCC-TTTTGCAGGGAGGATTGGAGCATTGGATTCTGCAAAGGACG
GAGTCCTTGAGATCCAGAATCAAGCTAAGCAGCAACTGCAGCGTGCAGCAATGGCAGCCTCTCCGGCTGAAGTTCTCCAG
CGTTGCAAGAGGCAAAAGAAGGACCCCAGTTGTCTGGGAAACTCGCCGGTCCTTCCGGCCACGGCAACTGCAGACTGGTC
CTCGCTCCAGCTCGACATAGTCCGCCGCATCGCCGACTCCTTCCTCGCCACCAATGACATTGACTGCTACATGGACTTGC
GCGCCGTCTGCCACAGCTGGCGTTCCGCCACCCACGACCCCAAGGACAACATTTTGGACCACCGGTTCCTTCCGCGCCGA
TGGATCATCCTCGACGAGGTCTTTCAGAGTGGAACGCACCGCCTCTTGGTCAACACCGCCACCGGCCGAATCCTCCACAA
AGAGCTCCCTCTGCTCTCTGACTACTATATCGTCACTACGTCTCTCGACGGCTTCTTCGTCCTGGCAGATAGGAGCCCCC
CTCATGCTGCTCGTGTCTTCAACCCTCTCACTGGTGGCATCATCCCTTTCACGGTGCCC---GTGCCGCCTGATGTGAAT
GCCCCCTGTTCGCTCTGCTTTGGGTTCGCTTCGCCCGTGCTCACCTTGCTCTCCAAGTCATGTTGCAAGATA---TACAT
AGCCAGTCCTCACAG---TTTTGGCGCCCATGACTTTGAGCTTTCACTCTATGGTCTTATT------AGGAGGCAGGTCA
AAGGTGATTTGGCCGGCCCTTGGTGGCTATCAGCAAGAAACTTGGAATCAGACGAAACAGCTGGCGTGGTTGT------C
AAAGATCTGCGATGTGATGAAGTCGCTCCGTGTTGACCCGTTGAAGTTCTTTTCTGGTGATCCTCCTGATATGGGGTTTG
CAGACGACACCCGGTGTTTCCTAATGGATTTTGGTGGACAACTGATGGCCATCATCAAGGGACAAC---TCGTCCAGAAT
TTAAGGTACGAAGCCAAGAATGGCGTGCTTTTGCATTTGAAGAGCATTGGCAACCATGCCATCTTCCTTGGTCATCATAG
GTGCCTAGCTGTGGATACTGATATGTTCCCATTGATTGAGGCAAACTGTGTTTACTACACTGAACAACTGGGTTTATCTG
CTCGTATATGGAAATGCAACATCAAGGACGAGAAAGTTGAGAGCATCTCGGAAGCCGTTGATTTTGTGAAGCAGGATAAG
CAGTTTGTCCTCGTCGGCGACCGTCCTTTAATGATCATCCAGCTTCTGTCAAGCTACACCATAAATATCCAGGATTCTGA
ACTGGCCTTACAGCAGATCGCATGAGGTGCTGATAAACTGGATGATCTGGCC--------TATGGTATGCATTGCTAAGA
AATGGCACCTGTTTTGTTATTTTGGTTAAGCCTTTGTTTCTTCCGGGCAAGAAACGGATTGACTCTTAGGTTGTATATTC
TATGATGGAATTACTGTCTACTACCTTATGTCCTCCACTGTTTAGATTTATGCTA----GCGTGCAATGTGGTTCTTAAT
TTCTGCAGTAGATAATGTCAGCTCAACCTGTCCCCCCTTTTATGTATTTAGCTTTGCAACTGAATCTTTGAAAATGTGTC
ATGCCTCATTGTTCTCTATAATCTTTTTAGTATTACAATATTTTCGTCTAGGCAGGAAACAAGTTTTAGATATTCTTACC
AGTGGTTTGTGGAACTATTGTATGTCAAGACCAGGGAGGGCTTCGAACAAAGTATGATATGGTGTTTCTGTTAGAATTAG
TTTATAACCGTAATAGACGGTTTGTATGCCCAAAGCGCCGTACGGACGCATGTGTCCGTACGGACGCCTTCTCATTGTAC
AGACGCCTGTGATCACTGAACAAGCGCCTTCTCCTTGTAACCGACTTTGCCAAGAGACGCAAAGCCTTGTATAAATACCA
TCCGATGATCAATGAAAGAGAGAAGTTCGATTCATTCTCATTTACATTCAACATGTATTATTTTTGGAATGCTTCCTAGT
GTGTACGCTTGTACCACATGTCCAGTTTGCTTTCGTCATTTCTTCTT---------------------------------
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>chr3A_1738
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---------------------------CATCGCCGACTCATTCCTCGCCACCAACGACCTAGATTGGTACATGGATCTGC
GCGCCGTCTGCCACAACTGGCGCTCCGCCACTGACGATCCCAGGAACAGCATCTCTGATTCCCGGTTCCGGCCTCGCCTA
TGGATCGTCCTCGACGAGGTCTTCGAGAGTGACACGCGCCGCCTCTTGGTCAACACCGCCACCGGCCGGTTCCTCCACAA
GGAGCTCCCGCTGCTCCGTGACTACTATGTCGTCACCACCAGTCCCCATGGTTTATTCGTCCTGGCCGACAGGAGCCCTC
CTCACGCGGCTTGTGTCTTCAACCCTCTCACCGGTGAGATCATCCGTTTCACGGCGGCGACTGTGCCGCTCGAGGTTCAG
GTCACCGCTGCCGTCTGCTTTGACTTCTCTTCGCCCTTGCTCACATTGTACTGCCACTCGTGTTGCAAGATGTACTACAT
GACCAGTCCTCACAGCAGTTTTGACACCCTAGACCTAGAGTGCGCGCTTTTGGTTTATAGTTTTTTCCGGAGGGCGGCCG
GAGCTGGTTTGGTTGGTCCTTGGTGGGATTTACTCAG------------------AACAACTGGCATGGCTCT------C
-AAGATCTACGAAGTGGGGCAGTCGCTTTGCGTTGATCTGTTGAAGTTTTTCTCCGATGATCCTACTGAGATGGGACTTG
CAAACGATGCCCGGTGTTTCCCAATGGAATTCCGTGGACAGAAGCTGGTCGCCATCAAGGGACAACATTTCTTCCAGGTT
TTAAGATTCG------AGAGCGGCGAGCTTTTGTATGTGAAGAGCATCTTGAACCATGCCATCTTCATTGGTCATCATAG
GTGCCTTGTTGTGGATGCTGATATGTTCCCATTGATTGAGGCAAACTGTATCTACTACACCGAACACCACGGGTCGTCTG
CTCACATCTGGAAGTACAATATCAAGGACCGGAAAGCTGAGAGGATCTCGGAAGCTGCCGATTTTGTGAAGCGGGACAAG
CATTTTCTCCTCATTGGCAACCGTCCTTTCACGATCGTCCAGCTTCTGTCAAGCTACACCATCAGCATCCGGGATTCTGA
ACTGGCCTTGCAGCAGACCACACAAGGCGCTGATGAACTGCATGACATTTGAGCCTATCGTATCGTATGCATTGCTAAGA
AAGGGTTCCTGTTTT-----------------------------------------------------------------
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>SNPs
----S------------S--S--------S----------------------------------------------S---
------------------------------------------------S------------------S----S-------
-SS-S---------------------------------------------------------------------------
----------------S--------S---------S-------------------------------------SSS--SS
SSSSSSSSSSSS--------------------------------------------------------------S-----
------------------------------------------S-------------------------------------
---S-------------------------------------------S--------------------------------
--------------------SS-------S------S-S-S---------------------------------------
--------------------S--------------------S--S-----------------------------------
----------------------------S---S---------S-S------SS--------S--------SSS-------
---S----------------------------------------------------------------------------
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-----S-----------------S-----------------------------------------------S--------
-S----S-S-S---------------------------------------------------------------------
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------------------------------------------------S--S------S--------SSSS-----S--S
------------------------------------------------S-----------S--------------SSSS-
---------------------------------------------------------------------------S----
------------------------------------S---------------------------------S---------
-----S---------------------------------------------------------------S----------
----------------------------S-----------------------------S---------------------
---------------------------------------------S----------------------------------
--S--S------------------------S--------S---SS-SSSS------------------------------
------------S--------------------------------------------------S----------------
----------S---------------------------------------------------------------------
----------------------------S--------S-------S------------------SSS------------S
---------------------------------------------------------------S----------------
---S--------------------------S-------------------------------------------------
----S-------------------S---S-----------------S--S-------------S----------------
---------------------------------------S----------------------------------------
---------------------------------------------------------------S-----------S----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-S-----------------------------S-------------------------S-----------------S----
------------------------------------------S-------------------------------------
--------S-S----S---------------------------------------S------------------------
--------------------------------------------------------------------------------
--------------S----------------------------------------------------------------S
--------------------------------------------------------------------------------
----------------------------------------------------------------------------S---
------------------------------------------------S-S-----------------S-----------
-------------------------------------------------S------------------------------
-S----------------S-------------------------------------------------------------
--------------------------------------------------------------------------------
----S---------------------------------------------------------------------------
-------------------S--S---S--S----S-------------------S------S-----------S------
-----------------S--------SS-S--------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------S--------------
---------------------S-S------------S----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSS
>forward_601
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------CGACCGAAAACTTCCCGAGA---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------
>reverse_3149
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------ACAGCAACTCCAGCGTGTAG--------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------
>forward_2883
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------GATCAGGGGGAGCAGAG
AGT-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------
>reverse_5225
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------TAGCTCACCATTGCTGCCAA------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------
