>input_sequence_42598
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------------ATGGGAACGCAAGCGGCGCCGGCGACCAGCGAGATCGCGGCGGTGGGCGTGATCGGCGCGGGCCAGAT
GGGCTCGGGCATCGCCCAGCTCGCCGCCGCGGCCGGCTGCGGCGTCTTCCTCGTCGACTCCGACCCCGCCGCCCTCTCCC
GCGCCGTCGCCTCCATCTCCTCCTCCCTCGGGCGCCTCGTCTCCAAGGGCCAGCTCTCCCAGGTGAGGACCCGACCCCCT
CGCCTCCCCCACCTCGCAAA-----------GTG----------------------------------------------
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-----------------ACGCTGTTCGTTGACATTTCTAGTCTCGCCTCGTCACAGGCTGCGTGCGATGATTCCGTCAAG
CGGATAAAGTGCGTCTCCGATGTGCAAGAGCTGCGGGGCGTGGATCTGGTGATTGAGGCCATCGTCGAGTCCGAAGACAT
CAAGAAGAAGCTGTTCGTGGAGCTGGACAGGATCACCAAACCTTCTGCTATTCTTGCCTCCAACACCAGCTCCATTTCTA
TAACCCGGCTTGCCTCTGCTACCGGCCGCCCCTCTCAGGTGACCACCAATCTGGCTCATCTCAGCAGTCGCCTTTAGCTA
CACCGGTTGATTGCTTGTCCAGAATTTACATAGGACAGTGATGCAGACCTTATCAATTGCAAGTGGGGCGGCAGTTTGTG
AATTATAACGACCC-GTTTGTTATGTTGGCGGCTAAATTTGCCTCTGTCATGCATGC-----------------------
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--------------------------------------------------------------TATCACATAGGATTGCAT
ACTCTACAACCTCAGAACATGTGTCCGAACACGTCT------------CAAGGCACTCCTGTAGTTTCTTAATTT-ATCA
ATCCTCT-GTTTTCATGTCTTTATTGTTTTTGGAGCGTCTCTTCACGATTATAAGAAGTTGAAGAGATTTCCATGTTACA
GGTGATAGGCATGCACTTTTTCAACCCTCCTCCTATAATGAAGCTGGTTGAAATAATACGAGGAGCTGATACATCAGAAG
AGGTTTTCTCTCAAGTTAAATCTTTTTCTGAAAGGTAAGGGAAAGCATCCTATTGCCCTGCCTAAGCTCACTAAG-CATA
GCCTTAAATGTGATCTTGTTTCTGCGTATTACTATAGCAACTCTGAAGTGGAACCTACTTATGTAAC-------------
----------------CAGAACAAGCGTTCTGTAAACACAAACCTACCACTTCCTATTGTTAATGGATTCGTTGAGAACA
CAACAAACTTACTATACTCTGGAGTTCAGGTAAACTTTAGGTCCCAAGTTAGTTTTTACCTAGTAACCTAGCTTTTTCAT
TGTAAAGAAAATGTGTCTTACCTTTGAAAGACCTCATTTGGCATGTTTAGTTTTTGGTGTGAACAATATTTTTAGCCCCA
AGGAGAACTACCATGCTACCTACTAAACCACTTAAAATTTGTGCTACATAC-TGGATGCATTAGCACAGATCTGAGACTA
AGATATAATTGGTTCAGCCAAGCTGGCTCGAGACTTATTTGCCTTTTAACCATGAAATTGTCTAATGATTTTGATCTTTG
CAGGATTGGGAAGACCGTTATATGCTCACAAGATTACCCCGGCTTCATTGTAAACCGCATCCTAATGCCGATGATTAATG
AAGCATTTTGGGCACTTTACACGGGGGTAGCAACCAAAGAGGACATCGATACAGGGATGAAGCTCGGCACAAATCATCCA
ATGGGCCCTCTGCAGCTTGCTGACTTCATAGGGTTAGATGTTTGCCTTTCAGTACTTAGGGTGCTCCACAACGGGCTAGG
AGATAACAAGTACAGCCCTTGCCCTCTGCTTGTCCAATATGTCGACGCCGGACGACTTGGAAAGAAGCGGGGACTAGGTG
TTTACTCTTACGGGAGAAGCTCTTCATCTGTTAAACCCAAGTCATCTC-------TGTGA--------------------
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>chr3D_1_TraesCS3D01G321200
CAGCTTTTGTCTTCCGAATCCTTTTTTCAGCCCGCAAAAATAGTTCCCACTCACCGTTGCCCCCTCTCACTTTTCACCTT
GGTTCGTCCCTGTCTTTATCCTAGGAATCTTTCTAAGTTTCTTCACTTGGCACAATTTCAAAAATATACCTACATGCAAG
AAGTAAATATTACAAAGTTACCTGCAATTGCACAATAATATACTAAGCCATCGGGAAGAAGATCTAGCTACTTTCAATGT
TACGGACTGAGATCCAGTAACTTCACTTGGTGAAGTCACGTTGCAACTTTAGGCTCTTCATCTCCATCCAAAATAGATCC
A-----------------------------------------------------ACGGTCCATATCATGCAAAGGCAAAA
AAGCTCACTTGGCCAGTTTTGCAGCCCAACAGCGACAGAACACTGCTCGTAGGATTCAGTTAAAACAGATTACATGCCAA
CTATCTAATCTTCATTTCTGAATATATATATCTTCTTGGAGCATTGT---------------------------------
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-----------------------------------------------------TCGGTGCAGGTGATGTAAAATTTTATA
CATCTTCTTGGAGCAGCGTTCCGATGCCTTGGATGTAAAAGTTACTTCCTCTGTTTCTAAATATAGGTCTTTCTAGAGAT
TTTAACAAGTGACTATATACAAAGCAAAATGAGTGAACCTATACTCTAAAATATGTGTACATACATCTACATCTGTATGT
GGTAGTCCATTTGAAATCTCTAAAAAGACTTATATTTAAGAACAGGGGAAGTAGTTATTTATACATCTACAGATATCCTC
TAAGAATTTGACCTAAGATGTATATTGGGTTTTTCCTTATATGGAAGTTGCTCTAACGTCCCCCGCAAAAAAAGAAAAGA
AAAAAGAAGTTGCTCTAACGTCAGCTAGTTCGGCACGG------------------------------------------
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----------------TAAGCAAGATCAAGCAGTATCGGCCCCACCACCAGCA--------CGCCAGAGA-------ATA
CGCCCAGCGCTGAAGCGTAGCAGGTGCAGAGAACACGGCACGGAAGGCAGAGATAACCGCACCAAACAAACTGAACTCCG
AAGAAACGAAGCATGGGAACGCAAGCGGCGCCGGCGACCAGCGAGATCGCGGCGGTGGGCGTGATCGGCGCGGGCCAGAT
GGGCTCGGGCATCGCCCAGCTCGCCGCCGCGGCCGGCTGCGGCGTCTTCCTCGTCGACTCCGACCCCGCCGCCCTCTCCC
GCGCCGTCGCCTCCATCTCCTCCTCCCTCGGGCGCCTCGTCTCCAAGGGCCAGCTCTCCCAGGTGAGGACCCGACCCCCT
CGCCTCCCCCACCTCGCAAA-----------GTG----------------------------------------------
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-----------------ACGCTGTTCGTTGACATTTCTAGTCTCGCCTCGTCACAGGCTGCGTGCGATGATTCCGTCAAG
CGGATAAAGTGCGTCTCCGATGTGCAAGAGCTGCGGGGCGTGGATCTGGTGATTGAGGCCATCGTCGAGTCCGAAGACAT
CAAGAAGAAGCTGTTCGTGGAGCTGGACAGGATCACCAAACCTTCTGCTATTCTTGCCTCCAACACCAGCTCCATTTCTA
TAACCCGGCTTGCCTCTGCTACCGGCCGCCCCTCTCAGGTGACCACCAATCTGGCTCATCTCAGCAGTCGCCTTTAGCTA
CACCGGTTGATTGCTTGTCCAGAATTTACATAGGACAGTGATGCAGACCTTATCAATTGCAAGTGGGGCGGCAGTTTGTG
AATTATAACGACCC-GTTTGTTATGTTGGCGGCTAAATTTGCCTCTGTCATGCATGC-----------------------
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--------------------------------------------------------------TATCACATAGGATTGCAT
ACTCTACAACCTCAGAACATGTGTCCGAACACGTCT------------CAAGGCACTCCTGTAGTTTCTTAATTT-ATCA
ATCCTCT-GTTTTCATGTCTTTATTGTTTTTGGAGCGTCTCTTCACGATTATAAGAAGTTGAAGAGATTTCCATGTTACA
GGTGATAGGCATGCACTTTTTCAACCCTCCTCCTATAATGAAGCTGGTTGAAATAATACGAGGAGCTGATACATCAGAAG
AGGTTTTCTCTCAAGTTAAATCTTTTTCTGAAAGGTAAGGGAAAGCATCCTATTGCCCTGCCTAAGCTCACTAAG-CATA
GCCTTAAATGTGATCTTGTTTCTGCGTATTACTATAGCAACTCTGAAGTGGAACCTACTTATGTAAC-------------
----------------CAGAACAAGCGTTCTGTAAACACAAACCTACCACTTCCTATTGTTAATGGATTCGTTGAGAACA
CAACAAACTTACTATACTCTGGAGTTCAGGTAAACTTTAGGTCCCAAGTTAGTTTTTACCTAGTAACCTAGCTTTTTCAT
TGTAAAGAAAATGTGTCTTACCTTTGAAAGACCTCATTTGGCATGTTTAGTTTTTGGTGTGAACAATATTTTTAGCCCCA
AGGAGAACTACCATGCTACCTACTAAACCACTTAAAATTTGTGCTACATAC-TGGATGCATTAGCACAGATCTGAGACTA
AGATATAATTGGTTCAGCCAAGCTGGCTCGAGACTTATTTGCCTTTTAACCATGAAATTGTCTAATGATTTTGATCTTTG
CAGGATTGGGAAGACCGTTATATGCTCACAAGATTACCCCGGCTTCATTGTAAACCGCATCCTAATGCCGATGATTAATG
AAGCATTTTGGGCACTTTACACGGGGGTAGCAACCAAAGAGGACATCGATACAGGGATGAAGCTCGGCACAAATCATCCA
ATGGGCCCTCTGCAGCTTGCTGACTTCATAGGGTTAGATGTTTGCCTTTCAGTACTTAGGGTGCTCCACAACGGGCTAGG
AGATAACAAGTACAGCCCTTGCCCTCTGCTTGTCCAATATGTCGACGCCGGACGACTTGGAAAGAAGCGGGGACTAGGTG
TTTACTCTTACGGGAGAAGCTCTTCATCTGTTAAACCCAAGTCATCTC-------TGTGAACATATCCATGTGGCTGTTG
AGCGAAGAAATGAGGTTGTGTATG--------------------------------------------------------
-----------------------------------------------------ACGAAAGGTG--GTACTTGTGGTCACC
AAGCATCGGA-ATAACAGGCTTAGGGCATGTACAATGGTTGATAAGATAAGTCTTATCTTAATTCTTGCATGTAATTTAG
AGATGACAAAAAAATATGTCTACAATGGGTCATCTCTTAGTCTTATCTTTAATAACTAGCTATTCCTAAAAATATGACAA
GATATATTGTGCTAAGAGATCATCTCTTGTCTTCTCTTAAATAAGAGAAGACAAACCTTTTCTTATGATTTCTCTCTCCT
TCACCTCATCATTTATCCTACGTGTCACTCCTAAGATAGCACCATTATACATGCCCTTACGCGGGCTTGGTTTTGTAGAA
TTGTCAAATAAGCTTACCCAAAACAATGGGTGTTTAGGGGTTCAAGGTGCCATGTGAAACTTTTACATGTAAAAATCATG
AAATTTACAT--ACTTGGATACCTGAAAATCCATGCC-TGGGCTCTTCCAGACTCTATACTGACTGTGACACAG----TA
TGCAGTTTCAAGCGTTACAGTCTTACAAGTTACAACGATTAGATCGGCAGCTCCAGAAATTACCCCTACGCTGTTGGAGC
GTGCG-------CAGCAGCAGCCGTGCTGTTCAAGCACAACAGCAGATCGGCAAAATAAATGCACTTCAGCAGATCGGCA
ACATAAATGCACTTCTGTTGATCG----------------TCACGACCTTGAACCAAAAGAAGCCGCTGAACATGAACGA
TATCAAGTTTTTTTT------ACATCATATTCCCCTCCATATTCAGCTCAATAAGGAACGGAAATTTTCTGAGGTTCAGA
TATAAGAATCCAATGAGTTCTCCAGAAGCGTATCAGTTGGTAACAACATATACAT-------------------------
---------------------------------------------------------------------------ATCAC
TGTGCTATGCTCTAGGTGAGACTGGGCCGTCACACGGATCAAACTTCACAATCGTTCTCGCATCAGGGAGCAAAGGGTGC
TTAATTGGTCTGTGTCCTTTCTTGTACC
>chr3A_41
----------------------------------------TAGTTCCCACTCACCGTTGTCCCCTCTCACTTTTCATCCT
GGTTCGTCCCTGTCTTTATCCTAGGAATCTTTCTAAGTTTCTTCACTTGGCACAGTTTCAAAAATATACCTACATGCAAG
AAGTAAATGTTACAAAGTTACCTACAATTGCACAATAATATACTAAGCCATCGGGAAGAAGATCTAGCTACCTTCAATGG
TAAACAACAACAATAACTCACATTGTCTCTATGTAATAAGAACATGCATATTGAGGTGAAATAAAAATTAGCACAGTATG
AATAAAGCTATGAATATTTAGCACACTAGTCCCGTAGGAATTTCGTTGGGATGTAGGATCCCTATGTTTAAATGGCAGAA
AAGAAAATTTCCCTATAGGAATCCTACCCCTATGGCCTCTCTTTTTACTGACGAACCAACAGTAGCCCTGCTTTGCATTA
AGAAGAGAGAAAGAGGTATAGTGTCATGTTCTCGTGTATTTAGCACTGAAAAAACAAAGAAAATCTACAAAGAGGTTTGA
GTGAAGACCTTTAAAATGGAATAAAATGAATCCTATAGAAAAATTCCTAAGGATTCCAATCTTGTAAATCAAATGATCAC
CATACAACTTTTTTCTAAAAAATTAAGTTCTCCAATAATTCTATGGAATTTCTTTGAATGAAAGGAGCCCTGCAATTTAT
AGTTTTTTCCTTTGTTCCAAACACCCCTCCAATAATTGTCATGCATTCAATCAAGATCTGATGTACCTGAGCTCGTTTCC
TGCTAAGAACATCTCCAATAGAAGATATAAATTTGGAGATGTAAAAATGGGTGTTGTATAATTTACATCATAAAAAAATC
CCAACTCCAACATGAGATGTATATTTGGTGATGTAAAACTAGTGCTCCAGCAGATGATGTAAATACATGATGTAAAATTA
GTTCAACTACTACATCGTTTCAAACATAATTTAAACATAGCAAGTTCGTTTGAAGCAAACATAGTTCTTAAAACGTAGTT
AAACATAGTTCAAACTACTATATCCATCAAACTACTACTCCTCCGAGTCCACTTCAACTTCATAAAATGCGGCGGAGCTC
AAATCGGGCGGCGACTGAGCTGCAAATGTGGCAAGGCGGGCCGGTAGAGTTCGAATCAAGTGTCGGCCGAGGATCAAATG
CGGCGGGGTGGGCCGACGTAGCTCAAATCAAGCGGCGGCCAAGCTTCAACTGAGGCGGGCTTCGAATCGGGCGGCGACAG
GGGCGGTGGAAAAGTGGGGTGGATGCGGCCGATTTGCAAGTGGGGCGGCTGAAATGCGGCGGAACCAGTGGTAGGGGGTG
GAGGCCGGATCTGGCGGTGTGGCGGGGTCCGGTGGGCGGGCGACGCGATGGCAGCTGTGCGAAGGGAGGCAACGAGGTGG
TCGCACTATGAATGGAGGAAAGAAGAAGTGGTTGTTGGCGGTTGACGTGCGGTTGGCCACTTTACGTATAGGTTTACATC
TTGAACGGTTGGTGATGCATATTTTCATCTCTAAGGATTATATTTTACATCACTCGGTGCAGGTGATGTAAAATTTTATA
CATCTTCTTGGAGCAGCGGTCCGAGGCCTTGGATGCAAAAGTTACT----------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------AGTTATTTATATATCTACAGAAATGCTC
TAAGAATTTGACCTTAGATGTATATTGGGTTTTTCCTTATATGGAAGTTGCTCTA-------------------------
-----------------ACGTCAGCTAGTTCGGCGCGGTAAGACTAGTCACAGTGAGGAGTAACTTAGAGTAGTAACATG
CATATGTTACTATTCTGTGTTACTACCTCCACAGTGGGTAGTAACATATGTATTATGTTATGCATCACTTCATTTATTAG
GCTATAGACTCATTTTTTTTTATACGTGTGATGTTACAGTAACTAGCTATGTTACTACATGTCTCTCTTTCTTCATTAAT
TACATGCCACATCACCTATTTTGTCTAGATACGTGTAATATTACCACCTATGTTACTCCGAGAAAATTGAATATTTGCCA
CTTTAAGCATCGGGCTTCTCAAAAATGCCACTCTCAAGGTGGGCTTCTCAAAAATGCCACCCAGCTCATGGACATCTTGA
TTACTATGCCATTTCCCCCGTTTTCCTGTTTCTTCTTTAGTTTTTTCATTTACCTGCGCTTGAAAGGACAAGACTACCCC
TAGATATGTACACGTACCTGATTGCGTCGTGTAGGCAGTCGACTTGTTGTGTTGCCCCTCACGCGCGCCACCAGCCTGAA
AAACAGTTGATAACACCACGCGCAGGCGCAGAGCCGCAGATCGCCTACACACCGCCGCCGCCGCTGATCGCCTGGACGTC
GCTGCCGTTGATATCCTTGACGCCGCAAATCGCCTATACACCGCCGCCGGCGCCACCGCTGATTGCCTGGACGTCGCCGC
TGTTGATATCCTTGACGCCGCCGGGCTGCCGATCCCTGGGCGTCTCCGCGCTGCCTATCCATGGACGTCGCTGGCGCCAA
TCGCCTGGACGGGGACGCCACGCACCATGGTGCGGCAACGACAGCATGGAACCCAGTCCTCTGCACTGTATTTTGCTAAG
CCTTTCTCTTGCTTTGTTCGCATGATCTTAATTTACAAAACTATACCGTGTATATCTGCAACTGCAAGTAGATATATCTA
GATTATGCATCCAGTTTAAGCACTCTGCACGTGAGCTTGGCCTGGTGCGAGCAGTCGTATAAGATAAAGAATAATTATGA
GTTGTTGTGGAACAGTATTAAGAGAATATCTAACGCATGGTGGCGAGCAGGTGAGGGCGAGGTACAGCTGCGATTAGGCG
TGGCGTGGGTGACCGGCAAGAACGAGCTTCGGCGGCACGCGCAGGCGTGGCCGAGTTACAGGCTTACAGCAGCGAGCAAT
CGGACAGCATCGGAGCATCCCATGGGCGACCCAATCGAGCCACGCACAAACCAGATAAGGTTAGGAGAGACAAGGGCACT
TTGGTCCTTTCAAGCGCAGATAAATGAAAAAACTAAAGAAAAAACAGGAAAACGGGGGAAATGGCATAGTAATCAAGATG
TCCATGAGCTGGGTGGCATTTTTGAGAAGGCCATCTTGAGAGTGGTATTTTTGCGAAGCCCAATCTTTAAAGTGGCAAAT
GTCTAATTTTCTCGTGTTACTCCTGTTGGAAATATGAGCAATTTACCGAATGATTTTATTAACAGAAATACTAGATAAAA
CATGACTAATATAGTAGAGAAAGCATGACTAATATAGTAGAGATAAAACAAGTCATGCGTTCTGACAGAGAAAAGGAAAA
TAGCTTCTGCATATATGAACCGTAGCCTATCATATCTAAAGTAGACAGAATCAGAACCTTCAACAGGAAAGACAAGAACA
CGTACTCTGCCATGTCGTCGAGGAGGTCGTGGACGTCGGGGAAGAAGTCGTCGTCGGCAACCGAATCGCCCGTGATGAAG
CAGCCAGTAGTCGTGGACTTGGGAGCGCGCGTGGATGTCCCTCTTGTTCTCATGCTCATACATGTGGGGAAAGATCTCTC
TTATAAAGAGGTCCAACTCCCTCTAAACTAGCAATGTGGGACTAAACTTTTGTTCCACCTCTTGCCTTACACAAATGAGC
TGCGTGGGCCTCTAGGATTTATTAGGAATTTTTGAAACTGCTATTGGGATAGGCCCAAAATAGACAAAATTCCAGCAACT
CGCATTGTGAGTAGTCTAAGCAAGATCAAGCAGTATCGGCCCCACGACCACCA--------CGCCAGAGCATACGCCATA
CGCCCAGGGCTGAAGCGTAGCAGGTGCAGAGAACACGACACGGAAGGCAGAGATAACCCCAACAAAC---------TCCG
AAGAAACGAAGCATGGGGACGCAAGCGGCGCCGGCGACCAGCGAGATCGCGGCGGTGGGTGTAATAGGCGCGGGGCAGAT
GGGCTCGGGCATCGCCCAGCTCGCCGCCGTGGCCGGCTGCGGCGTCTTCCTCCTCGACTCCGACCCCGCCGCCCTCTCCC
GCGCCGCCGCCTCCATCTCCTCCTCCCTCGGCCGCCTCGTCTCCAAG----------------TGAGGACCCGATNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNACGCTGTTCGTTGACACTTCTAGTCTCGCCTGGTCACAGGTTGCGTGCGATGACTCCGTGAAG
CGGATAAAGTGCGTCTCCGATGTGGAGGAGCTGCGGGGCGTGGATCTGGTGATTGAGGCCATTGTTGAGTCCGAAGATGT
CAAGAAGAAGCTGTTCGTGGAGCTGGACAGGATCACCAAACCTTCTGCCATTCTTGCCTCCAACACCAGCTCCATTTCTA
TAACCCGGCTTGCCTCCGCTACCAGCCGCCCCTCTCAGGTGACCACTAATCAGGCTTATCTCAGCAGTCGCTTTCAGCTA
CACCAGTTGCTTGCTTGTCCGGAATTTACATAGGATGGTGATGCAGACCTTATCAATTGCAAGTGGGGCGGCAGTTTG-G
AGTTATAACGACCCCGTTTGTTATGTTGGCGGCTAAATTTGCCTCTGTCATGCATGCTACTCCCTCCGTTCCTAAATACT
TGTCTTTCTAGGCATTTCAACAACAAGTGACTACATACGGAGCAAAATGAGTGAATCTACACTCTAAAATATGTCTACAT
ACATCCGTATGTAGTAGTCATTTGAAATGTCTAGAAAGACAAATATTTAGGAACAGAGGGAGTATTACATAGGATTGCAT
ACTCTACAACTTCAGAACAT------------GTCT------------CAAGGCACTCCTGTAGCTTCTTAATTTTATCA
ATTCTCTCGTTTTCATGTCTTTATTGTTTTTGGAGCTTCTCTCCATGATAATAAGAAGTTAAAGAGATTTCCATGTTACA
GGTGATCGGCATGCACTTTTTCAACCCTCCTCCTATAATGAAGCTGGTTGAAATCATACGAGGAGCTGATACGTCAGAAG
AGATTTTCTCTCGAGTTAAATCTTTTTCTGAAAGGTAAGTGAAAGCATCATATTGCCCTGCCTAAGCTCACTTTAACATA
GCCTTAAATGTGATCTTGTTTCTGCGTATTACTATAGCAACTCTGAAGTGGAACCTACTTATGTAACTGGTTGCTGTTTA
GATATAAAGTTCTATCCAGAACAAGCGTTCTGTAAACACAAACGTACCACTTCCTATTGTTAATGGATTCGTTGAGAACA
CAACAAACTTGCTATACTCTGGAGTTTAGGTATATTTTAGGTTCCAAGTCAGTCTTTACCTGGTAACCTAGCATTTTCAT
TGTAAAGAAAATGTGTCTTACCTTTGAAAGACCTCATTTGGCCTGTTTAGTTTTTGGTGTGAACAATATTTTTAGCCCC-
--GAGAACTACCATGCTACCTACTAAACCACTTAAAATTTGTGCCACATACGTGGATGCATTAGCGCAGATCTTAGACTA
AGGTATAATTGGTTCAGCCAAGCTGACTCTG-----ATTTCCCTTTTAACCTTGAAATTGTCTAATGATTTTGATCTTTG
CAGGATTGGGAAGACCGTTATATGTTCACAAGATTACCCTGGCTTCATTGTGAACCGCATCCTAATGCCGATGATCAATG
AAGCATTTTGGGCACTTTACACTGGGGTAGCAACCAAAGAGGACATCGACACAGGGATGAAGCTCGGCACGAATCATCCA
ATGGGCCCTCTGCAGCTTGCGGACTTCATAGGGTTAGATGTTTGCCTCTCAGTACTTAGGGTGCTCCACAACGGGCTAGG
AGATAACAAGTACAGCCCTTGCCCTCTGCTTGTCCAATATGTCGACGCCGGACGACTTGGAAAGAAGCGGGGACTAGGCG
TGTACTCTTACGGGAGAAGCTCTTCATCCGTTAAACCCAAGTCGTCCCTGTGAAGTGTGAACATATCCATGCGGCTGTTG
AGCAAAGAAATGAAATCGTGTGTGTACTCTCTGGACGAAAACAAAAGGACGAAAAGTAGTAGTACTTGTGGTCACTGAAA
CAATGGGTGTACTTTGTATGCACTTTGTATATCAGTGGAAGAAAACAAAACGACGAAAAGTACTAGTACTTGTGGTCACT
AGCATCGGAATATAACAGG-------------------------------------------------------------
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-------------------------------------------------------CTCACGCGGGCTTGGATTTGTAGAA
TCGTCAAACAAGCTTATCTAAAACAATGGGTGTTTACTGGTTCCAGTTACCATGTGAATCTTTTACATGTAAAAATCATG
AAATTTACAT--ACTAAGGG-CCTGAAAATCCATGCCCTGCGCTGTTCCGTACTCTATGCTGACTGTGGTATAG----TA
TGCAGTTTCAAGCGTTACAGTCTTACAAGTTACAATGATCAGATCGGCAGCTCCAGAAATGACCCCTACGCTGTCGGAAC
GTGCACAGCACACAGCAGCAGCCGTGCTGTCCAAGCACAGCAA-------------------------------------
-----------------------GTCACCAGAGAAAGACATCACGACCTTGAACCAAAAGAAGCCACTGAACACGAACGA
TACCAAGTTTTTTTTTA-CACACATCATATTCCCCTCTATATTTAGCCCGATAAGAAACTG-AAATTTGTGAGGTTCAGA
TAAAAGAATCCAACAAGTTCTCCAGACGAGTGTCAGTTGGTAACATATACTCCCTCCGTTCGGAATTACTTGTCTCGAAA
ATGGATGTATCTATAACTAAAATACATCTAGATACACCCATTTCTGTGACAAGTAATTCCGAACGGAGGGAGTACATGAC
TGTGCTATGCTCTAGGTGAGACTGGGCCTTCACACGGATCAAACTTCACAATCGTTCTTGCATCAGGGAGCAAAGGGTGC
TTGAGTGGTCTGTGCCCTTTCTTGTACC
>chr3B_827
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-----GAAGTTGCTCTAACGTCAGCTAGTTCGGCACGG------------------------------------------
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----------------TAAGCAAGATCAAGCAGTATCGGCCCCACGACCACCAGTCCACCACGCCAAAGA-------ATA
CGCCCAGTGCTGAAGCGTAGCAGGTGCCGAGAACACGCCAAGGAAGGCAGAGATAACCCCAACAAAC---------TCCG
AAGGAGCGAAGCATGGGGACGCAAGCGGCGCCGGCGGCTAGCGAGATCGCGGCGGTGGGTGTGATCGGCGCGGGGCAGAT
GGGCTCGGGCATCGCCCAGCTCGCCGCCGCCGCCGGCTGCGGCGTCTTCCTCCTCGACTCCGACCCCGCGGCCCTCTCCC
GTGCCGTCGCCTCCATCTCCTCCTCCCTCGGCCGCCTCGTCTCCAAGGGCCAGCTCTCCCAGGTGAAT-------CCCCT
CGCCTCCCCCGCCTCGCAAATTAGGGCTAAGGTG----------------------------------------------
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-----------------ACGCCGTTCGTTGACATTTCTAGTCTCGCCTGGTCACAGGCTGCGTGCGATGATTCCGTCAAG
CGGATAAAGTGCGTCTCCGATGTGCAAGAGCTGCGGGGCGTGGATCTGGTGATTGAGGCCATCGTTGAGTCCGAAGACGT
CAAGAAGAAGCTGTTCGTGGAGCTGGACAGGATCACCAAACCTTCTGCCATTCTTGCGTCCAACACCAGCTCCATTTCTA
TAACCCGGCTCGCCTCAGCTACTAGCCGCCCCTCTCAGGTGACCACCAAG--------TCTCAGCAGTCGCTTTTAACTA
CACCAGTTGCTTGCTTGTCCAGAATTTACATAGGACAGTGATGCAGACCTTATCAGTTGCAAATGGGGCGGCAGTTTGTG
AATTATAATGACCCCATTTATTATGTTGGCGGCTAGATTTGCCTCTGCCGTGCATGCTA---------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------TTACATAGGATTGCAT
ACTCTACAACTTCAGAACAT------------GTCTTCGAACATGTCTCAAGGCGCTCCTGTAGTTTCATAATTTTATCA
ATCCTCTGGTTTTCGTGTCTTTATTGTTTTTGGAGCGTCTCTCCTTGATTATAAGAAGTTGAAGAGATTTCCATGTTACA
GGTGATAGGCATGCACTTTTTTAACCCTCCTCCTATAATGAAGCTGGTTGAAATAATACGAGGAGCTGATACATCCGAAG
AGGTTTTCTCTCAAGTTAAATCTTTCTCTGAAAGGTAAGTGAAAGCATCATATTGCC-TGCCTAAGATCACTTTAACATA
-CCTTTAATGTGATCTTGTTTCTGTGAATTACTATAACAACTCTGAAGTAGAACCTACTTATGTAACTGGTTGTTGTTTA
GATATAA-GTTCTAGCCAGAACAAGCGTTCTGTAAACACAAATGTACCACTTCCTATTGTTAATGGATTCGTTGAGAACA
CAACAAAATTGCTATACTCTGGAGTTCAGGTAAACTTTAGGTCC-AAGTTGGTTTTTACCTGGTAACCTAGCATTTTCAT
TGGAAAGAAAATGTGTCTTAACTTTGAAAGACATCAGTTGGCCTGTTTTGTTTTTGGTGTGAACAATATTTTTGGCCCC-
--AAGAACTGCCATGCTACCTACTAAACCACTTAAAATTTGTGCCACATACTGG-----ATTAGCACAGATCTGAGACT-
-GATATAATTGGTTCAGCCAAGCTGGCTCGAGACTTATTTGCCTTTTAACCATGAAATTGTCTAATGATTTTGACCTTTG
CAGGATTGGGAAGACCGTTATATGCTCACAAGATTACCCCGGCTTCATTGTAAACCGCATCCTAATGCCGATGATTAATG
AAGCATTTTGGGCACTTTACACTGGGGTAGCAACCAAAGAGGACATCGACACAGGGATGAAGCTCGGCACGAATCATCCA
ATGGGGCCTCTGCAGCTTGCTGACTTCATAGGGTTAGATGTTTGCCTTTCAGTACTTAGGGTGCTCCACAACGGGCTAGG
AGATAACAAGTACAGCCCTTGCCCTCTTCTTGTCCAATATGTCGATGCCGGACGACTTGGAAAGAAGCGCGGACTAGGTG
TATACTCTTACAGGAGAAACTCTTCATCCGTTAAACCCAAATCATCTC-------TGTAAAAATATCAGCGCGGCTGTTG
AGCAAAGAAATGAAGTTGTGTATGTACTCTGTAT----------------------------------------------
---------------------------------AGTGGAAGAAAACAAAAAAGACGAAAGGTG--GTACTTGTGGTCACT
AAGCATCGGA-ATAACAGG-------------------------------------------------------------
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-------------------------------------------------------CTTACGCGGGCTTGGTTTTGTAGAA
TTTTCAAATAAGCTTTTCTGAGACAATGGGTGTTTACTAGTTCAAGGTGCCATGTGAAACTTTCACATGTAAAAATCATG
AAATTTACATATACTTGGATACCTGAAAATCCATGCCCTAGGCTGTTCTGGACTCTATGCTGACTGTGGCATAGTAGCTA
TGCAGTTACAAGCGTTACAGTCTTACAAGTTACAATG--TAGATCGGCAGCTCCGGAAATTACCCCTACGCTGTTGGAGC
GTGCG-------TAGCAGCAGCCGTGCTGTTCAAGCACAACAGCAGG---------------------------TCAGCA
AAATAAATGCACTTCTGTTGATCGTCACCAGAGAAAGACATCACGACCTTGAACCAAAAGAAGCCGCTGAACACGAACGA
TATCAAGTTCTTTTTACGCACACATCATATTCCCCTCCATATTCAGCTCAATAAGGAACGGAAATTTTCTGAGGTTCAGA
TAAAAGAATCCAATGAGTTCTTCAGACGTGTGTCAGTTGGTACAAC---ATATAT-------------------------
---------------------------------------------------------------------------ATCAC
TGTGCTATGCTCTAGGTGAGACTGGGTCTTCACATGGATCAAACTTCACAATCGTTCTCGCATCAGGGAGCAAAGGGTGC
TTAATTGGTCTGTGTCCTTTCTTGTACC
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------S----------------S-S-
------------------------------------------------------S-------------------------
--------S--------------S-----------------------------------------------S-------S
--SSS-SSS-S-SSS-S-S--S-SSSS-SSSSSSSSS-S-SSSSSS-S-SSS-SSS-SS-SSSSS-SSS-SS-S--SSSS
-------------------------------------------------------S-S---S---SS-SS--S----S--
---SSS-S--SS-S-SSSSSSSSSSS-SS-SSS-S-SSSS-SS-SSS-SS-S--SS--SSSSS-S-SSSSSSSSSSSSS-
SS-SSSS-SSSSS-SS-S-SSSSSS--S-SSSSSSS-SSSSSSSSS----------------------------------
--------------------------------------------------------------------------------
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------------------S-----S----------S----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------S---------S--S---
--------------S----------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSS
SSSSS---------------------------------------------------------------------------
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---------------------------------------------S----S-----------------------------
-------S-----------------------------S--------------------S--S-----SSSSSSSSS----
-----------------S-----------------------------------------S--------------S-----
----------------------------------------------------S---------------------------
-------------------------------S------------------------------------------S-----
----------S---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------S-------------------------------
-----------------------------------------------------------------S------------S-
------------------------------------------------S-------------------------------
----------------S------S---------------------------S----S--------------S--------
----S----S----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------S--------------
----------S---------SSSSSSSSSSSS------------------------------------------------
------------------------------------------S--S----------------------------------
--------------------------------------------------------------------------------
---------------------------------------S---------S----------------------SSS-----
--------------------------------------------------------------------------------
-------------------------------------------S------------------------------------
----------S--------------------------------------------------S----------S-------
------------------------------------------S------------------------------------S
SS------------------------------------------S-----------------------------------
--------------------------------------------------------------------------------
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----------------------S--------------------------S--------------------S---------
--------------------------------------------------------------------------------
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-S--------------------------S------------------------------------------S--------
---S---------S------------------------------------------------------------------
-------------------------------------------------------------------------------S
-------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------------
----------------S-S-----------------SS------------------------------------------
--------------------------------------------S----S--------S---------S--S--------
-----------------------------------S--------------------------------------------
----------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSS--S---
-S-----------------------------------------------------------------------S------
--------------------------------------------------------------------------------
--S-----------------------S-S--S-------------SSSS-------------------------------
--------------------------------------------------------------------------------
----------------------------S---------------------------------------------------
----------------------------
>forward_60
----------------------------------------TAGTTCCCACTCACCGTTGC--------------------
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>reverse_5222
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---------------------TGTCCGAACACGTCTCAAGG---------------------------------------
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>forward_446
--------------------------------------------------------------------------------
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--------------------------CAACAGCGACAGAACACTGC----------------------------------
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>reverse_5228
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---------------------------AACACGTCTCAAGGCACTCC---------------------------------
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>forward_4706
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----------------------------------------------TGGTGATTGAGGCCATCGTC--------------
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>reverse_6103
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----------------------GGGGGTAGCAACCAAAGAGG--------------------------------------
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>forward_4885
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-----------------------------------------------------------------AGTCGCCTTTAGCTA
CACCG---------------------------------------------------------------------------
--------------------------------------------------------------------------------
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>reverse_7184
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---------------------------------------------------------------ACTTCAGCAGATCGGCA
ACA-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------
