>input_sequence_42575
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-------------------------------ATGTCAACGGATCCTCCCCTCCATACAAATGCAGCACAACTCTTCTC-T
TCTCCTCTCCTTTTATTATTCCCGAGAAAATCCAACCCAGCTAGACTAGCCCACACTCCACACTCCACACCTCCTTCTCC
TTCTCTCCAGAACAGAGCTTGGCTCTCCGCCGGTTTCTGCTCAAGTGGAGAGGCCCGTCAGCTCGA-CGGCTCCAGGATC
ATGGACGACGGCGCAAGACCGGCGCCCAACCACAAGAGGCACCTCCCGTAATTCACGAGCTT--CTCTCTGCCCAATTGA
TTTGTTTCTTTTCTTGTGTGCTTGTTGTTCCTTGTGCGAGCCTTCTCGTGGCGCAGACTGCAGGAGGCGGGCGGCGAGCT
CGTGGAGCTGCTGTGGCAGGACGGGGCCATCGTAGCGCAGGCGCAGGCCCAGACGCCGCATCGGCGGTTCCCCCAGAGCG
GCGCGGCCAGCGGCGTCACCGCGGAGGACGCGGCCGCGTGGTTGATCCCGGACGGCGGC---GGCGGCAGGGACCTGTAC
TCGCACCTCTGGCACGGCGTCGTCGACGGGGACGCGGGGGCGCTCGTGGCGGGAAGCGGCGCCGGGACGAGCTTCTGCGG
GAGCAACGCGGTGACGGCGCCGGCGCTGCTGCCGTCGCCGGAGGAGGAGCCGGGCTCGTCCTCGGCGGGAGGCCAAGCGC
TACTGTCTAAGAGGGGGAGGGACGAACTGGGTAGCCACCGCGAGGTTCTCTTCCTTTTCCCCTCTACCTTGTCGGCGCAG
ACGGCGACATTGCTAAGCACTTATTTAAGTTTG----TGTATAGTTTCGGCTGAACCGGTGACGGAGGGAATATTATGAT
GTTTGCAGGATGCCGACGACTGTGAGGCCGTCAATGAGACCCGCCCGCAGCGGCCGGCGGCAAAGCGAAGGACTCGTGCT
GCCGAGGTCCATAACCAATCAGAGCGGGTAAAGCCCTGACGACTCACCCATTCCAGTGTTGATCTGTTGCAAACCAGTCT
CGTGATATTTCTGTTTTGCAGAAAAGAAGGGATCGGATCAACGAAAAGATGAAAGCATTGCAAGAACTCGTACCCCATTG
CAACAAGGTATCAGAGAAGTTTCTGCATTAGTACTTGTGTTCTTGAACCATTGTTACGTTTCTAGTTTGGTGTGGATGGT
TGATCCTAGCTAAAAATTAATTGCAGAGCGACAAGGCGTCCATCCTAGACGAAGCAATCGAGTACTTGAAGTCTCTGCAA
CTGCAAGTTCAGGTTCAAAATTGAAAATCACACCCTGAATTTCTAATCTCTCCTCAATCAAGCACGGTATTCGACTCACA
G-TGTTGGCTTGGGTTCAGATCATGTGGATGACTACTGGGATGGCGCCCATGATGTACCCTGGTGCCCACCAACTCATGC
CGCCGATGGCCATGGGCTTGAACGCAGCGTGCATGCCCGCGACGCAGAGCCTTAGCCAGCTGCAAAGAATAGCACCGTTT
ATGAACCATCATCTCCCAAATCAAATGCCTAGGGTCCAATCTCCAGCTATCGATTCCCTCAATGTGGCAAACCAGATGCA
A------------AACAATGGTGTCTGTGGTGAGCCAAGAAACCCTTTCCTGCATCCAGACGACACACTAACAGCAGCAT
CTCAGGTTAGTACAACACACTTAGTCTCCTCCTGATCTATCAGACTTTTACTCCTGTTAGCTTACGGTGTCGATTCCTCG
CAGCTGCCGGATATGTTTCCCTATGCATCTCAAAAGGCACAACAAAACCAGAATCATCAGTTACTGCCTAACACTGACAT
GCCAGCTTCAGGACCCTGCCCGCCATCTTTTGCTGACGGAACTGGAACATAA----------------------------
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-------
>chr2D_1_TraesCS2D01G254400
ATATTGTTATGAAAAATACACTACAATACGTGAAAGTACACTTGGTATAAAAATATTTGTTAAAGGCTATCAACAATGGA
TCTAGTTTGTGAGGATGGAAGTGATTCATAGTTTGGAAGCTCAGTTTGAAAGGTACTTCACTGAAGTTCCAATCCTGGAA
GGCCCTCCATCGAGACAGG--AAAAATATTACCAAATAGATGTAAGATGTCCGCCTTATTATGGTATCTATGACTATGTA
GAAATGATGTTGTTTTTAAGGGCAAAAGTTAATCTCCTCTAGAGGCTATTTTTTGTTGCACGTATTGTCTTTGCATGTGT
CTATGCTTCACCAAACTGAGTATCAACCGATGTTTAACAC-GGGTGGTTAGAGAGGTT---ACCCAACATGGACGACAGT
ATAATCTCTAGATCAGACCACCACCTCTCTCGATATAGACATAGTATCACTCACTAGGACTTTATTATTATTGATATTTT
AGATTTTTATTTTTC-----------------------------------------------------------------
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------------------------------------------------------------------------------TT
TTGTCGGATAGTTCATGTTTTGGCTGTGTGCATGATAGATATGCAGAGGTCAAGATGTTGTCCATCGTGATTGTATCCGT
TTGATGCTATAT-TTTT----CTAATTAATGTAAAAGCTTATTTTATCAGAGT---------------------------
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------------------------------ATGTGTTGTTCCACATACTGCCATGGAATACCGCGCGAGATAATTGGGTA
CGTTTTCGCCGGTGGTTACTTTTTTTATG-A-AAAAATGTACTTTATTATTTCTG--TATTTTTCTATTGATTTTTTATT
TTCATGTTCAATAT-------------GCAAATACTGTA---TTTTTCTTGGTGGCTGCCGCGGATTCACAGTCGGGTCT
ATTTAGGACACATCTAGATGTGATATAGTTATGTCACATCTAAACTGATGTCCACTCCTTCTGTGGTCTATTTTCTTATT
CTATTTTTTTTGTTGCTGCATTATATATTTGTAAAAGCTTAGACGTGACATTTTTAAAAAATATTTAGATATGCATTATA
CAAACTGTTCACAGCCACACGGGCGACAACGATGTCAACGGATCCTCCCCTCCATACAAATGCAGCACAACTCTTCTC-T
TCTCCTCTCCTTTTATTATTCCCGAGAAAATCCAACCCAGCTAGACTAGCCCACACTCCACACTCCACACCTCCTTCTCC
TTCTCTCCAGAACAGAGCTTGGCTCTCCGCCGGTTTCTGCTCAAGTGGAGAGGCCCGTCAGCTCGA-CGGCTCCAGGATC
ATGGACGACGGCGCAAGACCGGCGCCCAACCACAAGAGGCACCTCCCGTAATTCACGAGCTT--CTCTCTGCCCAATTGA
TTTGTTTCTTTTCTTGTGTGCTTGTTGTTCCTTGTGCGAGCCTTCTCGTGGCGCAGACTGCAGGAGGCGGGCGGCGAGCT
CGTGGAGCTGCTGTGGCAGGACGGGGCCATCGTAGCGCAGGCGCAGGCCCAGACGCCGCATCGGCGGTTCCCCCAGAGCG
GCGCGGCCAGCGGCGTCACCGCGGAGGACGCGGCCGCGTGGTTGATCCCGGACGGCGGC---GGCGGCAGGGACCTGTAC
TCGCACCTCTGGCACGGCGTCGTCGACGGGGACGCGGGGGCGCTCGTGGCGGGAAGCGGCGCCGGGACGAGCTTCTGCGG
GAGCAACGCGGTGACGGCGCCGGCGCTGCTGCCGTCGCCGGAGGAGGAGCCGGGCTCGTCCTCGGCGGGAGGCCAAGCGC
TACTGTCTAAGAGGGGGAGGGACGAACTGGGTAGCCACCGCGAGGTTCTCTTCCTTTTCCCCTCTACCTTGTCGGCGCAG
ACGGCGACATTGCTAAGCACTTATTTAAGTTTG----TGTATAGTTTCGGCTGAACCGGTGACGGAGGGAATATTATGAT
GTTTGCAGGATGCCGACGACTGTGAGGCCGTCAATGAGACCCGCCCGCAGCGGCCGGCGGCAAAGCGAAGGACTCGTGCT
GCCGAGGTCCATAACCAATCAGAGCGGGTAAAGCCCTGACGACTCACCCATTCCAGTGTTGATCTGTTGCAAACCAGTCT
CGTGATATTTCTGTTTTGCAGAAAAGAAGGGATCGGATCAACGAAAAGATGAAAGCATTGCAAGAACTCGTACCCCATTG
CAACAAGGTATCAGAGAAGTTTCTGCATTAGTACTTGTGTTCTTGAACCATTGTTACGTTTCTAGTTTGGTGTGGATGGT
TGATCCTAGCTAAAAATTAATTGCAGAGCGACAAGGCGTCCATCCTAGACGAAGCAATCGAGTACTTGAAGTCTCTGCAA
CTGCAAGTTCAGGTTCAAAATTGAAAATCACACCCTGAATTTCTAATCTCTCCTCAATCAAGCACGGTATTCGACTCACA
G-TGTTGGCTTGGGTTCAGATCATGTGGATGACTACTGGGATGGCGCCCATGATGTACCCTGGTGCCCACCAACTCATGC
CGCCGATGGCCATGGGCTTGAACGCAGCGTGCATGCCCGCGACGCAGAGCCTTAGCCAGCTGCAAAGAATAGCACCGTTT
ATGAACCATCATCTCCCAAATCAAATGCCTAGGGTCCAATCTCCAGCTATCGATTCCCTCAATGTGGCAAACCAGATGCA
A------------AACAATGGTGTCTGTGGTGAGCCAAGAAACCCTTTCCTGCATCCAGACGACACACTAACAGCAGCAT
CTCAGGTTAGTACAACACACTTAGTCTCCTCCTGATCTATCAGACTTTTACTCCTGTTAGCTTACGGTGTCGATTCCTCG
CAGCTGCCGGATATGTTTCCCTATGCATCTCAAAAGGCACAACAAAACCAGAATCATCAGTTACTGCCTAACACTGACAT
GCCAGCTTCAGGACCCTGCCCGCCATCTTTTGCTGACGGAACTGGAACATAAGACCAGGCAGTTTCAAGCAAGATGATTT
ACTGGTCAGTATAATGTTATTTTT-TATCTTTTTTTACGTAATATTTT-TT-TACCTATTAACTGAAACTCCAATAGGCA
TGTAT---------------------------------------------------------------------------
-------------------------------------------------------------------ATATCAGTAGATG
AATCTCCTAGAAAATTCAAAGTTTG---------ACTGAAACTCCAATAGGCATGTAGATCGGTAAATAATGTGCAGGCA
TGATTTTTATTGAGTTATCTATGAAATTTACTATATGCTGACATTATTTCCCAAGCTTAAGCGCATGCACTTAGCGTATG
GAACCTACCGAATTGCCGTCGCCGGATGGAACGGTTCTTGATATTTTGTTCCCCTTTGGCACCTTCCGGGTCCTGTCCAA
TCAGTAGATTAACTCTGATCGCGGCGGTTGTACATCCGTTTCACTCTTTCGCTGCTACATTCAATAGACTTTTTTGTCAG
ATTTGAAAAATAAGTCCCACTAGTTCACAAACAATTGGGTTGAGCATCGCTCTCTTGATGCAGACA-GACAAGGAATGCA
ACAAGGACTTGCATGAGATCAGCAACTAGTGAAAATACTACTAGTAATAGCCAGATGAGATCCTTGATGCTATCCCAACA
AGCAATTTATGCAGTGTTATTGCCGAAAATTATCGTCATGATACAGGATCATTGGACCGATGTAGAGGCTAATGATATAC
TAGTTTCAGATAACCCAGGACCTGTAGGACCTTATTTACTAATCAAGTTCTTTGGTTTATTTAGATTGATATCTTTATTT
AGAGGCTAATAATATACTCTCTCTATTTCAAATTAGTTGAAGTTCTAGGTTTGTCCTAAGTAAAGACGTCTTTAAGTTTT
ACCAAGTTCATAGAAAAAATATATCAACGCCAAATTAGTTTCTGTAGATTCTCTATAAAATATATTTCAGTTTTGCTAAA
GCACATCTAGATGTGCCATAAGTATTGCACATCTAAGTCCTGTATCATTGATCTTACACGAAGATTCGTGTGGGTATTTT
CTTACTA
>chr2A_1
ATACTGTTATGAAAAATACACTACAATACGTGAAAGTACACTTGGCATCAAAATGTTTGATAAAGGCTATCAACAATGGA
TCTAGTTTGTGAGGATGAAAGTGATTCATAGTTTGGAAGCTCAGTTTGAAAGGTACTTCACTGAAGTTCCAATCCTGAAA
GGCCGTCCATCAAGACAGGGG-AAAATCTTACCAAATGGATGTAAGGCGTCTGCCTTATTATGGTATATACGACTATGTA
GAAATGATTTTGTTTTTAAGGACTAAAATTAATCTCCTCTACAAGCTATTGTTTGTTGTACGTATTGTCTTCATATGTGT
CTACGCTACATCAAACTGTGTATCAACCGCTGTTCAACACGAGATGGCTAGAGAGGTT-----------------ACAAT
ATAATTTCTAGACCAGACCTATCACCTCCCTCACATAGACAAAGTGTCGCTGACTAAAACTTTATTATTGTTGATATTCG
G-----------TTT-----------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------------------------------------TT
TTATCGGATAGTTCGTGTGTTA---------ATGATAGATATGCAGAGGTCA-GATGTTGTCAATCATGATTGTGTCCGC
TAGATGCTATATATTTT----TTAATTAATATAGAAGCTTCTTTTATCATAGTAGGAAAACACAAGTAGAGCAAGTGTGT
TTTTAACACAGTACAAATGCAAGCGCTCATATACATGCGCATACACCCCTATGAGCACCTCTGAATGACTGAGCCGACAT
ATCATCTTAAAAATTATGAAGTCACCGTAGGCACCTCGTCGTCGACAGAGACATCTCCTCCCACTGAATGCTCATCACCG
AAATTCCTGAAATAATCCAGGAATAAATGCGAGCACCAGGACTTGAACCCTGGTGGACAGGGGATACCACAGTCCCTCTA
ACCATTTAAGCACAGGTTGGTTCGCACAGGTGGACAGGGGATATCACAGTGTTTGTAATCGTCGCTAGGTGGTTCATAGA
CCTGGTTGTAATTTTTGTTACCTTTTGTGTTCTCTGTACTGCCATGATTAATGAATAGATTGAAAATTTCTCTAAAAAAA
TAGAGCATGGAACAACAAAACAAGTAGAGCATGTGTTGTTCCACGTATCGCCATGGAATACCACGCGAGACAATGGGGTA
CGTTTTCGCCGGTGGTTACCTTTTTGTGAAAAAAAACTATACGTTATTATTTCTGTAT-TTTTTCTATTGATTTTTGATT
TTCATGTTCAGTCTCTCCACCCTTGGAGCAAATACAGTA---TTTTTCTTGGTGGCTGCCGCAGATTCACAGT-------
--------------------------------------------------------------------------------
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---------------CACACGGCCGACAACGATGTCAACGGATCCTCCCCTCCATACAAACGAAGCACAACTCTTCTCTT
TCTCCTCTCCTTTTATTATTCCCGAGAAAATCCAACCCAGCTAGACTAGCCCACCCTCCACAGCT--------CTTCTCC
TTGTCTCCACAACACAGCTTGGCTCTCCGCCGGTTTCTGCTCAAGTGGAGAGGCCCGTCAGCTCGATCGGCTCCAGGATC
ATGGACGACGGCGCAAGACCGGCGCCCAACCACAAGAGGCACCTCCCGTAATTCACCAGCTG--CT--CTGCCCAATTGA
TTTGTTTCTTTTCTTGTGTGCTTGTTGTTCCTTGTGAGAGCCTTCTCGTGGCGCAGACTGCAGGAGGCGGGCGGCGAGCT
CGTGGAGCTGCTGTGGCAGGACGGGGCCATCGTAGCGCAGGCGCAGGCCCAGACGCCGCACCGGCGGTGCCCCCAGAGCG
GCGCGGCCAGCGGCGTCACCGCGGAGGATGCGTCCGCGTGGTTGATCCCGGACGGCGGCGGCGGCGGCAGGGACCTGTAC
TCGCACCTCTGGCACGGCGTCGCCGACGGGGACGCGGGCGCGCTCGTGGCGGGGAGCGGCGCCGGGACGAGCTTCTGCGG
GAGCAACGCGGTGACGGCGCCGGCGCTGCTGCCGTCGCCGGAGGAGGAGCCGGGCTCGTCCTCGGCGGGAGGCCAAGCGC
TACTGTCTAAGAGGGGAAGGGACGAACTGGGTAGCCGCCGCGAGGTTCTCTTCCTTTTCCCCTCTACCTCGTCGGCGGAG
ACGGCGACATTGCTAAGCACTTA-TTAAGTTTG----TGTATAGTCTCGGCTGAACCGGTGACGGAGGGAATATTATGAT
GTTTGCAGGATGCCGACGACTGTGAGGCCGTCAATGAGACCCGGCCGCAGCGGCCGGCGGCAAAGCGAAGGACTCGTGCT
GCCGAGGTCCATAACCAATCAGAGCGGGTAAAGCCCTGACGACTCGCCCATTCCAGTGTTGATCTGTTCCAAACCAGTCT
TGTGATATTTCTGTCTTGCAGAAAAGAAGGGATCGGATCAACGAAAAGATGAAAGCATTGCAAGAACTCGTACCCCATTG
CAACAAGGTATCAGAGAAGTTTCTGCGTTAGTACTTGTGTTCTTGAATCATTGTTACATTTGTAGTTTGGTGTGGATGGT
TGATCCTAGCTAAAAATTAATTGCAGAGCGACAAGGCGTCCATCCTAGACGAAGCAATCGAGTACTTAAAGTCTCTGCAA
CTGCAAGTTCAGGTTCAAATTTCAAAATCACACCCTGAATTTCTAATTTCTCCTCAATCAAGCACGGTACTCGACTGACT
GCCGTTGGCTTCGGTTCAGATCATGTGGATGGCTACTGGGATGGCGCCCATGATGTACCCTGGTGCTCACCAACTCATGC
CGCCGATGGCCATGGGCTTGAACTCAGCGTGCATGCCCGCGGCGCAGAGCCTTAGCCAGCTGCAAAGAGTAGCACCGTTT
ATGAACCATCATCTCCCAAATCAAATGCCTAGGGTCCAATCTCCAGCTATGGATTCCCTCAATGTGGG------------
A------------AACAATGGTGTCTGTGGTGAGCCAAGAAACCCTTTCCTGCATCCAGGCAACACACTAACAGCAGCAT
CTCAGGTTACTACAACACAGTTAGTCTCCTCCTGATCTATCAGACTTTTACTCCTGTTAGCTTACGGTGTCGATTCCTCA
CAGCTGCCTGATATGTTTCCCTATGCATCTCAAAAGGCACAACAAAACCAGAATCATCAGTTACTGCCTAACACTGACAT
GCCAGCTTCAGGACCCTGCTCGCCATCTTTTGCTGACGGAACTGGAACATAAGACCAGGCAGTTTCAAGCAAGATGATTT
ACTGGTCAGTATAATGTTATTTTT-TATCTTTTTTTACGTAATATTTT-TTTTACCAATTAACTGAAACTCCAATAGGCA
TGTAC---------------------------------------------------------------------------
-------------------------------------------------------------------ATATCAGTAGATG
AATCTCCCAGTAATACAAAGTTTGCTATCGGTAAACTGAAACTCCAATAGGCATGTAGATCGGTAAATAATGTGCAGGCA
TGATTTTTATTGAGTTATCTATGAAATGTACTACATGCTGTCATTTTTTCCCACGCTTAAGCGCATGCACTTGGCGTATG
GAACCTACCGAATTGCCGTCGCCGGATGGAACGGTTCTTGATATTTTGTTCCCCTTTGGCACCTTCCGGGTCCTGTCCAA
TCAGTAGATTAACTCTGATCGCGGCGGTTGTACATCCGTTTCACTCTTTCGCTGCTACATTCAATAGACTTTTTTGTCAG
ATTTGAAAAACAAGTCCCACTAGTTCACAAACAATTGGGTTGGGCATCGCTCTCTTGATGCAGACGGGACAAGGAATGCA
ACAAGGACTTGCATGAGATCAGCAACTACTGAAAATACTACTAGTAATACCCAGATGAGATCCTTGATATTATCCCAACA
AGCAATTTATGCAGTGTTATTGCCGAAAATTATCGTCATGATACAGGATCATTGGACCGATGTAGAGGCTAATGATATAC
TAGTTTCAGATAACCCAGGACCTGTAGGACCTTATGTACTAATCAAGTTCTTTGGTTTATTTAGATTGATATCTTTATTT
AGAGGCTAATAATATACTCTCTCTGTTTCAAATTAGTTGAAGTTCTAGGTTTGTCCTAAGTAAAGACGTCTTTAAGTTTT
ACCAAGTTCATAGAAAAAATATATCGACGCCAAATTAGTTTCAGTAGATTCTCTATAAAATATATTT-------------
--------------------------------------------------------------------------------
-------
>chr2B_1
ATATTGTTATAAAAAATACACTACAATACATGAAAGTACACTTGACATCAAAATGTTTGTTAAAAGTTATCAACAATGGA
TCTAGTTTGTGAGGATGGAAGTGATTCATAGTTTGGAAGCTCAGTTTGAAAGGTACTTCACCGAAGTTCCAATCCTAGAA
GACCCTTCATCGAGACACGTAAAAATTCTTACCAAATGGATGTAAGGCATCTGA-----------------------GTA
AAAATGATTTTGTTTTTAT---------------------------------------TACGTATTGTCTT-GCATGTAT
CTACTCTACACCAAACTGAGTATAAGCCGATGTTCAACATGGGGTGGCCAGAGAGGTTTTTACCTAACATGGTCGG----
----------------------------------------------------------------TTATTGTTGATATGTC
AGGTTTTTATTTTTACTAGCAAAAGAGCCCGTGCGTTGCAACGGGAGAGAAAACATAACACACATTCTTAACCCAACAAT
CATCACCCAAGATCACAATTGTTCCATCTCCTTTATTTTTGCGAGGCATCATATTTATGTTGCCGCTTATCCTCCTTCTC
ACCCTCGCTGGCGATGGCCTCGGTGTTCACACAAAAAAAAAATATGTTTGAATATGTTTAATCCTAAGGCGTCTCTCTCT
TCCTCTCTCCTCCCTCTCCCTCCCTCCCTCTCTCTCTCGCTTTCTCTCACTCTCGCGATGAAAAATCTGTTGTTTTCCCC
TGCGACATTTTTCAGAGGTATGCATGTGTAGTTATTGATGTTTTCTTTTCCCTATATTGTTATAGTGGGTGTTTATTTGC
AATCCGGGTCGCCGCCGGTACGAAAGGAAAACGGAACTTACGCTATAAATTATAAGTTTGCTCTCAAAATGATATTTTAA
AAATATTTAACAGATAAAATTAACATCATATTTAAATTCCACATATTTTTCTAATAAAATTTCATATATAATATGTTAAA
ATCGAAGTTACGGTTTAAAAGATACGGATAATTTAGAAAATCATTTATTTGACTTAAATATATTCCAAAATAATATTTAA
AAATACTTAACAGGTGAAAATAATCTCATATTCATATTCTACATATTTTTTTAATCAAATTTCATATATAACATGTTCAA
ATCGGAGTTACGGTTTAAAAGATATGGATGATTTAAAAAAATATTGTTTGACTTAAATATGATCCGCGGATGAATTACCT
AAAACATCAGGGGGGTTTCGAAAAATATAAAATAACGGTTCAGGTGTGACTTAAATCCGGACCGCGGGTTGATTTCAACA
AAACACAGGGAGTTTTGTGTAAAATATGAAAAAAAAAACGATTAGTTTTAACTTAAAACAAGACTGCGGGTTGAATTCTC
TGAAATAGATGAACTTTCCTGAAAAATGTCATGACAGACGAAAGAAACTCAATTTGCTTTATTATTATTAGGTAAAGATT
TTGCCGGATAGTTCGTGTTTTGGATGTGTGCATGATAGATGTGCAGATGTCT-GGTGTTATTCATCGTTATTGTATCCG-
----TGCTACAT-TTTTCTAATTAATATAAATAAAAGCTTGTTTTATCAGAGT---------------------------
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------------------------------ATGTGCTGTTCCACGTATCGCCATGGAATACCACGCGAGATAATCGGGTA
GGTTTTCGCCGGTGGTTACCTTTTTGTGAAA-AGAAATGTACGTTATTATTTCTGTATATTTTTCTATTGATTTTTGATT
TTCATGTTCAGTCTCCG--CCCTTGGAGCAAATACAGTACTATTTTTCTTGGTGGCTGCCGCATATTCACAGT-------
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---------------CACACGGCTGACAACGATGTCAACGGATCCCCCCCTCCATACAAATGCAGCACAACTCTTCTC-T
TCTCCTCTCCTTTTATTATTCCCGAGAAAATCCATCTCAGCTAGACTAGCCCACACTCCACAGCT--------CTTCTCC
--------AGAACACAGCTTTGCTCTCCGCCGGTTTCTGCTCAAGTGGAGAGGCCCGTCAGCTCGATCGGCTCCAGGATC
ATGGACGACGGCGCAAGACCGGCGCCCAGCCACAAGAGGCACCTCCCGTAATTCACGAGTTTCTCT--CTGCCCAATTGA
TTTGTTTCTTTTCTTTTGTGCTTGTTGTTCCTTGTGAGAGCCTTCTCGTGGCGCAGACTGCAGGAGGCGGGCGGTGAGCT
CGTGGAGCTGCTGTGGCAGGACGGGGCCATCGTAGCGCAGGCGCAGGCCCAGACGCCGCACCGGCGGTGCCCCCAGAGCG
GCGCGGCCAGCGGCGTCACCGCGGAGGACGCGGCCGCGTGGTTGATCCCGGACGGCGGCGGCGGC---AGGGACCTGTAC
TCGCACCTCTGGCACGGCGTCGCCGACGGGGACGCGGGCGCGCTCGTGGCGGGAAGCGGCGCCGGGACGAGCTTCTGCGG
GAGCAACGCGGTGACGGCGCCGGCGCTGCTACCGTCGCCGGAGGAGGAGCCGGGCTCGTCTTCGGCGGGAGGCCAAGCGC
TACTGTCTAAGAGGGGGAGGGACGAACTGGGTAGCCGCCGCGAGGTTCTCTTCCTTTTCCCCTCGACCACGTCGGCGGAG
ACGGCGACATTGCTAAGCACTTA-TTAAGTTTGTGTATGTATAGTCTCGGCTGAACCGGTGACGGAGGGAATATTATGAT
GCTTGCAGGATGCCGACGACTGTGAGGCCGTCAATGAGACCCGGCCGCAGCGGCCGGCGGCAAAGCGAAGGACTCGTGCT
GCCGAGGTCCATAACCAATCAGAGCGGGTAA-GCCCTGACGACTCACCCATTCCAGTGTTGTCCTGTTGCAAACCAGTCT
TGTGATATTTCTGTCTTGCAGAAAAGAAGGGATCGGATCAACGAAAAGATGAAAGCATTGCAAGAGCTCGTACCCCATTG
CAACAAGGTATCAGAGAAGTTTCTGCATTAGTACTCGTGTTCATGAGTCATTGTTACGTTTGAAGTTTGGTGTGGATGGT
TGATCCTAGCTAAAAATTAATTGCAGAGCGACAAGGCGTCCATCCTAGACGAAGCAATCGAGTACTTGAAGTCTCTGCAA
CTGCAAGTTCAGGTTCAAAATTCAAAATCACACCCTGAATTTCTAGTTTCTCCTCAATCAAGCACGGTACTCGACTGACA
G-CGTTGGCTTGGGTTCAGATCATGTGGATGACTACTGGGATGGCGCCCATGATGTACCCTGGTGCCCACCAACTCATGC
CGCCGATGGCCATGGGCTTGAACTCAGCCTGCATGCCCGCGACGCAGAGCCTTAGCCAGCTGCAAAGAATAGCACCGTTT
ATGAACCATCATCTCCCAAATCAAATGCCTAGGGTCCAATCTCCAGCTATCGATTCCCTCAATGTGGG------------
AAACCAGATGCAAAACAATGGTGTCTGTGGTGAGCCAAGAAACCCTTTCCTGCACCCAGACGACACACTAACAGCAGCAT
CTCAGGTTAGAACAACACAGTTAGTCTCCTCCTGATCTATCAGACTTTTACTCCTGTTAGCTTACGGTGTCGATTCCTCG
CAGCTGCCGGATATGTTTCCCTATGCATCTCAAAAGGCACAACAAAACCAGAATCATCAGTTACTGCCGAACACTGACAT
GCCAGCTTCAGGACCCTGCCCGCCATCTTTTGCTGACGGAACAGGAACATAAGGCCAGGCAGTTTCAAGCAAGATGATTT
ACTGGTCAGTATAATGTTATTTTTTTATCCTTTTTTATGTTATAATTTCTTTTATCAATGAACTGAAACTCCAATAGGCA
TGTATATATCAGTAGATGAATCTCCCAGTAATACGAAGTTTGCTATCGGTAAACTGAAACTCCAATAGGCATGTATATAT
CAGTAGATGAATCTCCCAGTAATACAAAGTTTGCTATCGGTAAACTGAAACTTCAATAGGCATGTATATATCAGTAGATG
AATCTCCCAGTAATACAAAGTTTGCTATCGGTAAACTGAAACTCCAATAGGCATGTAGATTGGTAAATAATGTGCAGGCA
TGATTTTTGTTGAGTTATATATGAAATGTACTACATGCTGTCATTATTTCCCACGCTTAAGCGCATGCACTTAGCGTGTG
GAACCTACCGAATTGCCGTCGCCGGATGGAACGGTTCTTGATATTTTGTTCCCCTTTGGCACCTTCCGGGTCCTGTCCAA
TCAGTAGATTAACTCTAATCGCGGCGGTTGTACATCCGTTTCACTCTTTCGCTGCTACATTCAATAGTCTTTTTTGTCAG
ATTTGAAAAACAAGTCCCACTAGTTCACAAACAATTGGGTTGAGGATCGCTCTCTTGATGCAGACAGGACAAGGAATGCA
ACAAGGACTTGCATGAGATCAGCAACTAGTGAAAATACTACTAGTAATAGCCAGATGAGATCCTTGATGCTATCCCAACA
AGCAATTTATGCAGTGTTATTGCCGAAAATTATCGTCATAATACAGGATCATTGGACCGATGTAGAGGCTAATGATATAC
TAGTTTCAGATAACCCAGGACCTGTAGGACCTTATTTACTAATCAAGTTCTTTGGTTTATTTAGATTGATATCTTTATTT
AGAGGCTAATAATATACTCTCTCTGTTTCAAATTAGTTGAAGTTCTAGGTTTGTCCTAAGTAAGGACGTCTTTAAGTTTT
ACCAAGTTCATGGAAAAAATATATCAACGCCAAATTAGTTTCAGTAGATTCTCTATAAAATATATTT-------------
--------------------------------------------------------------------------------
-------
>SNPs
---------------------------------------------S--S-----S-------------------------
--------------------------------------------------------------------------------
---------------------------S---------S--------SS---S---------------S--S---------
--------S------------S-S---S-------------S-S------S-------S------------S--------
---S---S--------------------------S------------S----------------S-------S-----S-
-----S------S------SSSSS-SSS-SSS-S-------S---S--S--S----SS-----------S---------S
--S-----------S-----------------------------------------------------------------
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--------------S--------S----------------------------S--------------------------S
-S-------------------S--------S---------S---------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------S--SS-------------S-----------S-----
-------------------S-----SSSS-------------S---------------------------------S---
----------S-S----------------------S--------------------------S----------SSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSS-------S---------------------------------------------------------
--------------------------------------------------------------SSSSSSSSSSS-------
--S-----------S-----------------------------------------------------------------
------------------------------------------------------------------SS------------
------------------------------------S-------------------------------------------
------------------------------------------------------------S-------S-----------
--------------------------------------------------------------------------------
----------------------S---------------S-----------------------------------------
--------------------------------------------------------------------------------
------------------------------------S--------------------------------S-------S--
-----------------------S---------------------S----------------------------------
-------------------------------------------S------------------------------------
--------------------------------------------------------------------------------
S-------------S-----------------------------------------------------------------
-----------------------------------------------S-------------S------------------
--------------------------------------------------------------------------------
----------------------S------------------------S---------------------S------S---
--S-----------------------------------------------------------------------------
-----------------------S--------------------------------------------------------
-------------------------------------------------------------------SSSSSSSSSSSSS
--------------------------------------------------------------------------------
-------------------S------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------S-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------S--S--SSSS--SS--SS-------------------------------------------------------
---------------------------S-----S------S------------S--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------S---------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
------------------------S-------------------------------------------------------
------------------------------------------S------------------------SSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSS
>forward_434
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--------------AGACCACCACCTCTCTCGAT----------------------------------------------
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>reverse_3837
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------CACA
GTGTTGGCTTGGGTTC----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------
>forward_2633
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------------------------------------------------CACTCCACACTCCACACCTC-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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-------
>reverse_3843
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--TGTTGGCTTGGGTTCAGATCA---------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------
>forward_2837
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------TGTGCTTGTTGTTCCTTGTGC-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------
>reverse_4774
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------AGCTTAAGCGCATGCACTTAG------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------
