>input_sequence_42562
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-----------------ATGGCTGAAGCATGCCCTGATAATCGGCGATGTCTACCTGCTTGGATGATGAAGCCGTGCTCA
AGTAATGAAGTGTCAAAGACTGAGCATCGGAATAAGCAGTCGGCGGAATCTGATAAGGGATCAGGGGCTCTGGATCAGGC
TAAGCCCATCAGAAGGCAGAAAAAAATTGTGGATCCAGAGGATGCTGGTGGACTGAAGGCGTTGCAGCGATGCCAGGGTA
AAGAAAAGGCCAGGAGAAAGAGCAAGGATGCTGATCGTGCTGTCACGGATGAATTTGGTGAAATCGAGAAAATAACTTGT
AAGAATGAGAGGAAAGTTAGGGGAAGAGCTGCTCCGAAGAATAGCAGGAAGCGGATGCTGGAGGATGTGGGATCAGATGC
ATCGTCATCAGGAATAACTGATGATGAGATGGAGCTTAGTGCTGGCAATTCCAGAACTTTGCAACGATGTCAGGGTAGAG
AGAAGAACAGAAGAAAGCGTGACAGTGCTGATTATTCTTCCAAAGATGAACTTGAAGAAATTGAGAAAACAACTCGTAAG
AATGTGACAAAAGTGACTTGCAGAGCTGCTCCGAAGAATAGCAAGAAACAAAAGCCGGATAATGTTGGATCAGAAGCATT
GTCATCAGGTACAACTGATGATGAGATAGAGCTTACTGTGGAAGATCTTGTGAGCATAGCTGAAGAGGTAAACCATAATT
CTTTTTGCATTTTTGTTGTTTTACTTGTCTTCAGGTTTGACACATCTTCTGGTGTTGTTATGCAATTCCCCTTAAAATAC
GCTGGTTCCTGTTCATTACTTCACTGAACATCTGAGAATTATGCACTGCGTGCCAATTTATTAGCTTTATTTTTGATTGA
TGCAGGCAGATCTAGTACAACTCATTACTTGTTTTATAGAAATAATTAGAA-AAAAAATGACCTTTGCCAATAGGCAATG
GCCCCATTATGCTTAGGAGTGACCCTAGTGAATACATTTCATGGACCGATCTGGCTTGCACCTTGATAATATTTGTGCAT
GCAACTCTCAAGAGACAAACATGCACGATGTAGGCAAACTCTTGTTTTTCAGTCCAGTCCTATCATTAGTTTGAAGACAT
GATTAAGCATGATGTATCATTTCTAACTTCTCTGCCAAAGCTGAAGCTTAATAGGAGACTTATTCTGAGTGCTAATGACA
TCTTCCCCATAGAATTGAGGTCCTAATTTCATTGTGTGGCAGAAAATAATTTACCACCTTTTCGCCCCCTTTTTACATTT
TCTGGCTGCCTAGCAAACCAGCAATCCTGTTCGAAGTTTTGCTTTGAGTAACTA--AGTATACCACCGAAGGTATTCTGA
TGCATTTACATGATGCAGATTGTAAATGCTGATAAAGAGAAGCTACAAGATATACGGACCACAAAGACGGCCCGCTATGA
AGAGCGTCCTCCACGGCCTCCAGTCTCTACTCCTGTTGATACAGGAGGATCAATATCAAGCACTTGGTCAACAAAGGGGT
TGATGCAGTGCACAACAGCTACTACCACAGATGAAACTCCAAGCGAGTGCAGAGTAGACAAGAACAAGAGACATGAAAAA
CCAGAGCGTCCACCAAGTATCAAAATGACCGGTGATGTTGCTGAGGATATGATGAACATATTGCTCGGACCCCTGTGGAA
TAGTGAACCTGCAGCCTATGAAAATAAACCCGAGGCTGTGGTACCGAGGACCGTGAACGTGAATCTTGCGTCGCAGCGGA
AAAACGACTGGCAGAAGACTGTAGCACAAGTGCAGGGGGCACCTGTGGCGAAAAAGAAGAGCAGCCTGAAAGATATGGTG
GCCTTTTTTCTTGACTAG--------------------------------------------------------------
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------------------------------------------------------------------------
>chr1B_1_TraesCS1B01G175800
CAAAATGCCTATATTTTTTCTTTTCAACTCACCCACAAAAAGAAGTACTATTGAACTAAAAAATGTCTTATATTATGGGA
CGGAGGAAGTATAATGTAATATATAAAAAGATACAAGCTCTGGAAACAAAAGGAATAAAAAAATGGCATCGTGAAAGTTT
GATTATTTGGATCGTACAAATATGATACTACTCTGTAACTTAAATATAGGATGTTCTTGTAGTTCAATACCCTTTTTTTG
CGGGTGAGAAAAAAAATCCCGCAAGGAAAAAAAAGGGTAATGTTAGAAATTTTGAACCCTAAAAAAAATTAACCTTCGAA
AAGTTAACCAATACGAACGGGACAACGAGCCGTTGGGGCCGTTTTAATTACTCCGACTTTCAAGTTATCCATGAACCCCT
TCCTTTCTCGAAGTCTCTGGTCAAGGCAACATAAACAGTTTCCAAATCCCAATCCGTCGTCTCGTCCTCCGCCGGCCTTG
GGCGAGCCGCTCCGCCCCGCCGTAGGGCCTCACCGACCGGAGCTCCTACCAACCACTGCGGCAATCACATACCGC--ACC
GTTGGCCACGTAGGCTCCTTGATTGAGGTAATCCCACGGCCACGGCCACGCGGCACACCCGACTTTCCTCGCTTT-----
---CCCTCTCCCCTCAACCAGCTAAGAAGAAGGTGGGGGCGGGGTCAGATGCCGGTGAGTCCTCCGGCGTCGCCCCGTCG
GAAAGATGGGATCTTGGGGCCCTCAGAGCGGGGAAAATTGGCGCTTCTTGGGTTCTAGGGTCGGATCGGGCTAGGGCCCC
CTTCCTTTTACTTCGCCTTGTTTCTTTCTTTC----------------------------------------------TT
TACGATGAGAAAATTCGACATGTAGTTTATTCAGGATCTAATTCTTGTGCTGGTGGCT-ATTGTTTCAGATCGTCTCGTT
CAGAAAATTGCGATCAATTTCTTGATTCGTTTTTCTACTGAGACTGGGTAGTTCAAATTCAGGGGATTGTGTATACTCTG
TTGGCCTGCCTTTGAAGATGGCTGAAGCATGCCCTGATAATCGGCGATGTCTACCTGCTTGGATGATGAAGCCGTGCTCA
AGTAATGAAGTGTCAAAGACTGAGCATCGGAATAAGCAGTCGGCGGAATCTGATAAGGGATCAGGGGCTCTGGATCAGGC
TAAGCCCATCAGAAGGCAGAAAAAAATTGTGGATCCAGAGGATGCTGGTGGACTGAAGGCGTTGCAGCGATGCCAGGGTA
AAGAAAAGGCCAGGAGAAAGAGCAAGGATGCTGATCGTGCTGTCACGGATGAATTTGGTGAAATCGAGAAAATAACTTGT
AAGAATGAGAGGAAAGTTAGGGGAAGAGCTGCTCCGAAGAATAGCAGGAAGCGGATGCTGGAGGATGTGGGATCAGATGC
ATCGTCATCAGGAATAACTGATGATGAGATGGAGCTTAGTGCTGGCAATTCCAGAACTTTGCAACGATGTCAGGGTAGAG
AGAAGAACAGAAGAAAGCGTGACAGTGCTGATTATTCTTCCAAAGATGAACTTGAAGAAATTGAGAAAACAACTCGTAAG
AATGTGACAAAAGTGACTTGCAGAGCTGCTCCGAAGAATAGCAAGAAACAAAAGCCGGATAATGTTGGATCAGAAGCATT
GTCATCAGGTACAACTGATGATGAGATAGAGCTTACTGTGGAAGATCTTGTGAGCATAGCTGAAGAGGTAAACCATAATT
CTTTTTGCATTTTTGTTGTTTTACTTGTCTTCAGGTTTGACACATCTTCTGGTGTTGTTATGCAATTCCCCTTAAAATAC
GCTGGTTCCTGTTCATTACTTCACTGAACATCTGAGAATTATGCACTGCGTGCCAATTTATTAGCTTTATTTTTGATTGA
TGCAGGCAGATCTAGTACAACTCATTACTTGTTTTATAGAAATAATTAGAA-AAAAAATGACCTTTGCCAATAGGCAATG
GCCCCATTATGCTTAGGAGTGACCCTAGTGAATACATTTCATGGACCGATCTGGCTTGCACCTTGATAATATTTGTGCAT
GCAACTCTCAAGAGACAAACATGCACGATGTAGGCAAACTCTTGTTTTTCAGTCCAGTCCTATCATTAGTTTGAAGACAT
GATTAAGCATGATGTATCATTTCTAACTTCTCTGCCAAAGCTGAAGCTTAATAGGAGACTTATTCTGAGTGCTAATGACA
TCTTCCCCATAGAATTGAGGTCCTAATTTCATTGTGTGGCAGAAAATAATTTACCACCTTTTCGCCCCCTTTTTACATTT
TCTGGCTGCCTAGCAAACCAGCAATCCTGTTCGAAGTTTTGCTTTGAGTAACTA--AGTATACCACCGAAGGTATTCTGA
TGCATTTACATGATGCAGATTGTAAATGCTGATAAAGAGAAGCTACAAGATATACGGACCACAAAGACGGCCCGCTATGA
AGAGCGTCCTCCACGGCCTCCAGTCTCTACTCCTGTTGATACAGGAGGATCAATATCAAGCACTTGGTCAACAAAGGGGT
TGATGCAGTGCACAACAGCTACTACCACAGATGAAACTCCAAGCGAGTGCAGAGTAGACAAGAACAAGAGACATGAAAAA
CCAGAGCGTCCACCAAGTATCAAAATGACCGGTGATGTTGCTGAGGATATGATGAACATATTGCTCGGACCCCTGTGGAA
TAGTGAACCTGCAGCCTATGAAAATAAACCCGAGGCTGTGGTACCGAGGACCGTGAACGTGAATCTTGCGTCGCAGCGGA
AAAACGACTGGCAGAAGACTGTAGCACAAGTGCAGGGGGCACCTGTGGCGAAAAAGAAGAGCAGCCTGAAAGATATGGTG
GCCTTTTTTCTTGACTAGAGCAAAGTTGAAGTGCTGAACTGCATACACTGGCAGCCTGGGAGCATTGTTATGCTGATTAG
CTGGTTCCACGCATGTTGCATGGCCTGTAACTATTGTCCATTTGTCCCGCGGCGTTTTAGTCCACGTGTAAATTATATTA
TTTTGGTAGGATAGTAAGTCGCTTTTCTTTTCCTTTTTGGGGGACACTAATGTTGGTCATTTGTACAGTAGT--------
----------------------------------------------------------------------------ATGT
TCTTGCCTTCAAGTTGAAGATGTTTTTTTACTGCCTGTGCTGTCATTGTCATCTTACCTTGTATGATCTTGACCAGGTTC
AGGTTCAGGTAAAGAATCACAGGTTTAGCTTTCACGGATGATTAAAACCATATTTAT-TTGATTTATATTTTTGCTCTTT
ACAGTGGAAGTTCCTCAATTGCAGTGCTGGATAGATGCCTTCCCAGTTGTTTTGCTGGATTTGGTCATTGTTGAGCTCAG
AATCAGCTTATGTGAGTGTACATTTGAGCAAAAAGAGGGGCCTTTGTTTTCTCTAGAGTGAGCTTCCAGATAAATTTTGT
GAGGCAAATGTCTTCGTTAAAATCCATTTAGCAATAAAATCAGAGCTATATCCATGTCAATGTCCTTA------------
--------------------------------------------------------------------------------
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--------------------------------------------TGTCTTTGTGCTTCAAGTGTTTAGCTCCTTGGACGC
TATTTATAATTTTGATTGTTGCATTCTTAAAATCAGTGTGATCCTTGTAGATGCGTTATCAAGGTAATATTGCAAGTTAG
TAGTAGATCATCATGCTATACTCTTATCACCACA---------------------------------AGACAGCATTGCA
GCCCTTGGTCATGTTTTGTCATAGCTTTCTGGTTTACCATCTTCCTCCTCTCGCAACCGAATGTCGTGCTGTTGTAACGC
TGACGAAACCACCACACCTGAGTTTAAAAAGTAGAAGGGGCTCCCAGTTCACCTATAACTGATCACAAACTAAATAGGTC
AGAAATACAGAGCTACATATAGGAAAATGTCGCCCGACTTATCCATACAATAAGGTGGATCAAAAGAAAACG
>chr1D_247
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------AGAAAAAAAATCCCGCAAGGAAAAAAGGGTAATGTAGA--AATTTT-GAACCCTATAAAAAAACAA--------
-----AACCAATACGGACGAGACAACGAGCCGTTGGGGCCGTTTTAATTACTCCGGCTTTCAAGTTATCCATGAACCCCT
TCCTTTCTCGAAGTCTCTGGTCAAGGCAACATAAACAGTTTCCAAATCCCAATCCGTCGTCTCGTCCTCCGCCGGCCTTG
GGCGAGCCGCTCCGCCCCGCCGTAGGGCCTCACTGACCGGAGCTCCTACCAACCACTGCGGCAAGCCCATAC--C--ACC
GTTGGCCACGTAGGCTCCTTGATTGAGGTAATCCCACGGCCACGGCCACGCGGCACACCCGACTTTCCTCGCTTT-----
---CCCTCTCCCCTCAACCAGCTAGGAAGAAGGTGGGGT-GGGGTCAGATGCCGGTGAATCCTCCGGCATCGCCCCATCG
GAAAGATCGGATCTTGGGGCCTTGAGAGCGGGGGAAATCGGTGCTTCTTGGGTTCTAGGGTTGTATCGGGCTAGGGCCCC
TTTCCTTTTATTTCGCCTTCTTTCTTTCTTTCTTGGGGTTGCGGTGTAGTTTCAAGTTTGAGGGGCGACGGGAGTTTGTT
TACGATGAGAAAATTCGACAT--AGTTTATTCAGGCTCTAATTCTTGTGCAGGTGGCTGATTGTTTCAGATCGTCTCGCT
CACAAAATTGCGATCAGTTTCTTGATTTGTTTTGCTACTGAGACTGGGTAG-TCAAATTCAGGGGATTGTGTATATTCTG
TTGGCCTGTCTTTGAGGATGGCTGAAGCATGCCCTGATAGTCGGCGATGCCTACCTGCTTGGATGATGAAACCCTGCTCG
AGTAATGAGGTGTCAAAGACTGAGCATCGGAATAAGCAGTCGGCGGAATCTGATAAGGGATCAGGGGCTCTAGATCAGGC
TAAGCCCATCAGAAGGCAGAAAAAAATTGTGGATCCAGAGGATGCTGGTGGACTGAAGGCGTTGCAGCGATGCCAGGGTA
AAGAAAAGGCCAGGAGAAAGAGCAAGGATGCTGATCGTGCTGTCACGGATGAATTTGGCGAAATCGAGAAAATAACTTGT
AAGAATGAGAGGAAAGTTAGTGGAAGAGCTGCTCCGAAGAATAGCAGGAAGCGGATGCTGGAGGATGTGGGATCAGATGC
ATCGTCATCAGGAATAACTGATGATGAGATGGAGCTCAGTGCTGGCAATTCCAGAGCTTTGCAACGATGTCAGGGTAGAG
AAAAGACCAGAAGAAAGCGCGACAGTGCTGATTATTCTGCCAAAGATGAACTTGAAGAAATTGAGAAAACAACTCGTAAG
AATGTGACAAAAGTGACTTGCAGAGCTGCTCCAAAGAATAGCAAGAAACAAAAGCCGGATAATGTTGGATCAGAAACATT
GTCATCAGGTACAACTGATGATGAGATAGAGCTTACTGTGGAAGATCTTGTGAGCATAGCTGAAGAGGTAAACCATAATT
CTTATTGCATTTTTGTTGTTTTACTTGTCTTCAGGTTTGACACATCTTCTGGTGGTGTTATGCAATTCCCCTTAAA-TAC
GCTGGTTCCTGTTCATTACCTCACTGAACATCTGAGAATTATGCACTGCGTGCCAATTTATTAGCTTTATTGTTGATTGG
CGCAGGCAGATCTAGTACAACTCATTACTTGTTTTATAGAAATAATTGG-AAAAAAAATGACCTTTGCCAATAGGCAATG
GCCCCATTATGCTTAGGAGTGACCCTAGTGAATACTTTTCATGGACCGATCTGGCTTGCACCTTGATAATATTTGTGCAT
GCAACTCTCAAGAGACAAACATGCACGGTGTAGGCAAACTCTTGTTTTTCAGTCCAGTCCTATCATTAGTTTGAAGACAT
GATTAAGCATGATGTTTCATTTCTAACTTCTCTGCCAAAGCTGAAGCTTAATAGGAGACTTATTCTGACTGCTAATGACA
TCTTCTCCATTGAATTGAGGTCCTAATTTCATTGTGCGGCAGAAAATAATTTACCAACTTTTCG-CCCCTTTTTACATTT
TCTGGCTGCTTAGCAAACCAGCAATCCTGTTCGAAGTTTTGCTTTGAGTAACTATAAGTATACCACTGAAGGTATTCTGA
TGCATTTACATGATGCAGATTGTAAATGCTGATAAAGAGAAGCTACAAGATATACGGGCCACAAAGACAGCCCGCTATGA
AGAGCGTCCTCCACGGCCTCCAATCTCTACTCCTGCTGATACAGGAGGATCAACATCAAGCACTTGGTCAACAAAGGGGT
TGATGCAGTGCACGGCAGCTACTACCACAGATGAAACTCCAAGCGAGTGCAGAGTAGACAAGAACAAGAGACATGAAGAA
CCAGAGCGTCCACCAAGTATCAAAATGACCGGTGATGTTGCTGAGGATATGATGAACATATTGCTCGGACCCCTGTGGAA
TAGTGAACCTGCAGCCTATGAATATAAACCCGAGGCTGTGGTACCGAGGACCGTGAACGTGAATCTTGCGCCGCAGCGGA
AAAACGATTGGCAGAAGACTGTAGCACAAGCGCAGGGGGCACCTGTGGCGAAAAAGAAAAGCAGCCTGAAAGATATGGTG
GCCTTTTTTCTTGAGTAGAGCAAAGTTGAAGTGCTGAACTGCATACACTAGCAGCCTGGGAGCATTGTTATGCCGATTAG
CTGGTTCCACGCATG-TGCATGGCCTGTAACTATTGTCCATTTGTCCCGCGGCGTTTTAGTCCACGTGTAAATTATATTA
TTTTGGTAGGATAATAAGTCGCTTTTCTTTTCCTTTTCGGGGGACAATAATGTTGGTCATTTGTACAGTAGT--------
----------------------------------------------------------------------------ATGT
TCTTGCCTTCAAGTTGAAGATGTTTGA-TACTGCCTGTGCTGTCATTGTCATCTTACCTTTTATGATCTTGACTGTGTTC
AGGTTCAGGTAA-GAACCACAGGTTTAGCTTTCATGGATGATTAAAACCATATTTATTTTGATTTATATTTTTGCTCTTT
ATAGTGGAAGTCCCTCAACTGCAGTGCTGGATAGATGCCTTCCCAGTTGTTTTGCCGGTTTTGGTCATTGTTGAGCTCAG
AATCAGCTTATGTGAGTGTACATTTGAGCAAAAATGGGGGCATTTGTTTTCTCTAGAGTGAGCTTTCAGATAAATTTTGT
GAGGCAAATGTCTTTGTTAAAATCCATTTAGCTATAACATCAGAGCTATATCCATGTCAATGTCCTTA------------
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--------------------------------------------TGTCCTTGTGCTTCAAGTGTTTAGCTCCTTGGACTC
TATTTATAATTTTGATTGTTGCATTCTTGAAATCAGTGTGATACTTGTGGATGTGTTGTCAAGATAATATTGCAAGT---
TAGTAGATCATCATGCT--ACTCTTATCACCACAGACCCGGAACAAAAGATAATGCTGCCCCTGAAAAGACAGCGTTGCA
GCCATTGGTCATGTTTTGTCATAGCTTTCTGGTTCACCATCTTCCTCCTCTCGCAACCGACTGTCGTGCTGTTGTACCGC
CGATGAAACCACCACACCTGAGTTTAAAAAGTAGAAGGGGCTCCCAGTTCACCTATA-----------------------
------------------------------------------------------------------------
>chr1A_253
--------------------------------------------------------------------------------
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------------AAATTCCCGCAAAGAAAAAAAGGTAATGCAGA--AATTTTTAAACCCTAAAAAAATTTAACCTTAGAA
AAGTTCACCAATACAAACGGTACAACGAGCCGTTGGGGCCTTTTTAATTACTCCGACTTTCAAGTTATCCATGAACCCCT
TCCTTTCTCGAAGTCTCTGGTCAAGGCAACATAAACAGTTTCCAAATCCCAATCCGTCGTCTCGTCCTCAGCCGGCCTTG
AGCGAGCCGCTCCGCCCCGCCGTAGGGCGTCACTGACCGGAGCTCCTACCAACCACTGCGGCAATCCCATAC--CGCACC
GTTGGCCACGTAGGCTCATTGATTGAGGTAATCCCACGGCCACGGCCACGCGGCACACCCGACTTTTCCTCGCTTCCCCT
CTCCCCTCTCCCCTCAACCAGCTAGGAAGAAGGTGGGG-CGGGGTCAGATGCCGGTGAATCCTCCGGCGTCGCCCCGTCG
GAAAGATCAGATCTTGGGGCCTTGAGAGCGGGGAAAATTGGTGCTTCTTGGATTCTAGGGTTCGATCGGGCTAGGGCCCC
CTTCCTTTTATTTCGCCTTCTTTCTTTCTTTCTTGGGGTTGCGGTGTAGTCTCAAGTTTGAGGGGCGACGGGAGTTTGTT
TACGATGAGAAAATTCGACAT--AGTTTATTCAAGCTCTAATTCTTGTGCAGGTGGCTGATTGTTTCAGATCGTCTCGCT
CA----ATTGCGATCAGTTTCTTGATTTGTTTTGCTACTGAGACTGGGTAG-TCAAATTCAGGGCATTGTGTATATTCTG
TTGGCCTGTCTTTGAGGATGGCTGAAGCATGCCCTGATAGTCGGCGATGCCTACCTCCTTGGATGATGAAACCCTGCACG
AGTAATGAGGTGTCAAAGACTGAGCATCGGAATAAGCAGTCGGCAGAATCTGATAAGGGGTCAGGGGCTCTATATCAGGC
TAAGCCCACCAGAAGGCAGAAAAAAATTGTGGATCCAGAGGATGCCGGTGGGCTGAAGGCGTTGCAGCGATGCCAGGGTA
AAGAGAAGCCCAGGAGAAAGAGCAAGGATGCTGATCGTGCTGTCACAGATGAATTTGACGAAATCGAGAAAATAACTTGT
AAGAATGAGAGGAAAGTTAGTGGAAGAGCTGCTCCGAAGAATAGCAGGAAACGGATGCTGGAGGATGTGGGATCAGATGC
ATCGTCATCAGGAATAACTGATGATGAGATGGAGCTTAGTGCTGGCAATTCCAGAGCTTTGCAACGATGTCAGGGTAGAG
AAAAGACCAGAAGAAAGCGTGACAGTGCTGATTATTCTGCCAAAGATGAACTTGAAGAAATTGAGAAAACAACTCGTAAG
AATGTCACAAAAGTGACTGGCAGAGCTGCTCCGAAGAATAGCAAGAAACAAAAGCCGGATAATGTTGGATCAGAAGCATT
ATCATCAGGTACAACTGATGATGAGATAGAGCTTACTGTGGAAGATCTTGTGAGCATAGCTGAAGAGGTAAACCATAATT
CTTATTGCAGTTTTGTTATTTTACTTGTCTTCAGGTTTGACACATCTTCTGGTGTTGTTATGCAATTCCCCTTAAA-TAC
GCTAGTTCCTGTTCATTACTTCACTGAACATCTGGGAATTATGCAGTGCTTCCCAATTTATTGGCTTTATTGTTGATTGA
CGCAGGCAGGTCTAGTACAACTCATTACTTGTTTTATAGAAATAATTGG-A-AAAAAGTGACCTTTGCCAATAGGCAATG
GCCCCATTATGCTTAGGAGTGACCCTAGTGAATACTTATCATGGACCGATCTGGCTTGCACCTTGATTATATTTGTACAT
GCAACTCTCAAGAGACAAACATGCATGGTGTAGGCAAACTCTT----TTCAGTCCAGTCCTATCATTAGTTTGAAGACAT
GAGTAAGCATGA------------------------------------TAATAGGAGACTTGTTCTGAGTGCTAATGACA
TCTTCTCCATTGAATTGAGGCCCTAATTTCATTCTGTGACAGAAAATAATTTACCAACTTTTCGCCCCCTTTTTACATTT
TCTGGCTGCCTAGCAAACCAGCAATCCTGTTCGAAGTTTTGCTTTGAGTAACTA--AGTATACCACTGAAGGTATTCTGA
TGCATTTACATGATGCAGATTGTAAATGCTGATAAAGAGAAGCTACAAGATATACGGACCACAAAGACATCCCGCTATGA
AGAGCGTCCTCCACGGCCTCCAGTGTCTACTCCTACTGATACAGGAGGATCAGTATCAAGCACTTGGTCAACAAAGGGGT
TGATGCAGTGCACGGCAGCTACTACCACAGATGAAACTCCAAGCGAGTGCAGAGTAGACAAGAACAAGAGACATGAAGAA
CCAGAGTGTCCACCACGTATCAAAATGACCGGTGATGTTGCTGAGGATATGATGAACATATTGCTCGGACCCCTGTGGAA
TAGTGAGCCTGCAGCCTATGAAAATAAACCCGAGGCTGTGGTACCAAGGACCGTGAACGTGAATCTTGCGCCGCAGCGGA
AAAACGACTGGCAGAAGACTGTAGCACAAGTGCAGGGGGCACCTGTGGCGAAAAAGAAGAGCAGCCTGAAAGATATGGTG
GCCTTTTTTCTTGACTAGAGCAAAGTTGAAGTGCTGAAGTGCATACGCTAGCAGCCTGGGAGCATTGTTATGCCGATTAG
CTGGTTCCACGCATG-TGCATGGCCTGTAACTATTGTCCT--------GCGGCGTTTTAGTCCACGTGTAAATTATATTG
TTTTGGTAGGATAACAAGTCGCTTTTCTTTTCCTTTTGGGGGGAGAATAATGTTGGTCATTTGTATAGTACTCCCTCTGT
CCCGGAATATAAGAACGTTTTTGACACCATGCTAGTGTTAAAAACGTTCTTATATTTTGGGACGGAGGGAGTAGTAATGT
TCTTGCCTTCAAGTTGAAGATGTTTGG-TACTGCCTGTGATGTCATTGTCATCTTACCTTTGATGATCTTGACTGTGTTT
AGGTGCAGGTAAAGAACCACAGGTTTAGCTTCCACAGATGATTAAAACCATATTTATTTTGATTTATATTTCTGCTCTTT
ACAGTGGAAGTTCCTCAATTGCGATGCTGGATAGATGCCTTTCCAGTTGTTTTGACGGTTTTGGTCATTGTTGAGCTCAG
AATCAGCTTATGTGAGTGTACATTTGAGCAAAAATAGGGGCATTTGTTTTCTCTAGATTGAGCTTCCAGATAAATTTTGT
GAGGCAAATGTCTTTGTTAAAATCCATTTAGCAATAAAATCAGAGCTATATCCATGTCAATGTCCTTAGAGCAACTCCAA
TGGAGCGACTCATTTTGTCCGCAGCCGTCCGTTTTGGGTTGGCGCGGACAAAAAAGCCGGCCCAACGCGCTGACCTAAAC
GAACGCGTGTCCGCTTTCGTCTACCTGCCGACCCATTTCCAGTCCATTTTTTAGGCTGATTTGCGTTGGCGCGGACACAA
GACGGACGCGCGCGCGCTCGCCCTCTTTCCTCACCGGCCCCGCTAGTCGGTGGCACATTGGATTCACACACTCGCCCGCC
TGCTACGTCGCCGATGCCACCGGCCATTTTTTCAGATTAAAATGGATACATAGATAGTTTTAGTATACACAGATAAAAGA
AAAAGACCATTACTCGTCGCTTTCTGACTCCGACTCGGTAATGTCCTCCTCCGACGTTTGAAGGTAGGCGTCAGCAAGCT
GCTCGTCTTCAAAGTCTCAACCCGATGTTTCTTGTAGCTTCAGTTTCAATTGAGCTGTCTGCTTCCGCGAACGCTTGTCC
TCCCGATAGGCGGCTCGCTCCCTCCTCGCGTCCCTCTCCGATCTCAATTGCTTATAGAACTGGCGCTCGTCGACGATGTC
CTGCAGGTAGCCTCCTCGCCACAGCACCGAGGCTTCCACGTCCTTCTCTGCGATGGCGAGGCCACGCTGCTGCCTCCGAT
GGACACGGCGATCCTCGTCGGTGAAAAGCCGCGGGAGAGGCGCCAAATCTTGCGCCCGTTGGCTCGACACGTTGGGAAAA
ATTCATATCACGACGAGGCCTCAGGAGGCACCACGCCGCCGCGTCGTGCGCGCGGGCCGCCTCCTCTGCAGTGTCGAAGG
TGCCGAGGACGAGACGTTTCTCGCGAAATCAGATCTCGGCGGAGAAGGCGCCGGAGCGGCGCTCGCGGACTCCGCGAAAA
TCCGAAGCGCGTAGGCGGCGAATCGACATGGTGGCGCAGAGGCGGCGAGAGTGGGCGGCCGACAGAGTGTGGAGGGAGCG
CCTTCTTTTATAGCGAGCGCCGGCCGCGGCGCGCGCGTGAACCTTTCCCGCGCGCTGGAGCGCCAAAACCAGCGTGCGCG
AACCATTCCCGCGTGCTGGAGCGTCAAAATCAGGGCGACGGCACGATGTTAAACGCGCGCGGTCATGAAAATGGGTCAGC
CCGTTGAGCGCACTGCCGACTCAAAACTAAAAGAGAACGGACAGCGGGCGGGCGGCCAAACCAAACGGACAAAAAACGAA
CAAAAACGCCGTCCGTTTAGATCGGTCCGTTGGAGTTGCTCTTATGTCCTTGTGCTTCAAGTGTTTAGCTCCTTGGACGC
TATTTATAATT---------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSS---------------------------S-SSSSS-SSSSS--S---------------------------S---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------S--------------------------------S-----SS------
--------------------------------------------------------------------------------
------------------------S-------------S-------------------S---------------------
-------S-------------S-S-----------------S-------------------S------------------
----------S--------S------------------------------------------------------------
---------------------SS------------S--------------S---------------------------S-
--S-------------S----------S-----S-----------------S-----------------------S----
--------S------S-----------------------S---------S--------------------S--S-----S
--------S--------------------------------------------------------------S--------
--------------------------------------------------------------------------------
----------------------------------------------------------S---------------------
--------------------S-----------------------------------------------------------
-------------------------------------------------------S------------------------
-S----S-------------------------------S-----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---S------------------------------------------------------------------------S---
-----------------------------------------------------------------------S--------
S----------------------------------------------S-S------------------------------
-----------------------------------S--------------------------------------------
---------------------------S----------------------------------------------------
---------------S----------------------------------------------------------------
-----S----S---------------------------------------------S-----------------------
------------------------------------------------------------------S-------------
--------------------------------------------------------------------S-----------
-----------------------------------S--------------------------------------------
-------------SS--------------------------------------------------------------S--
--------------------------------------------------------------------------------
----------------------------------------------------------------------S---------
--------------------------------------------------------------------------------
-------------------------------------------------S-----------------------S------
---------------S----------------------------------------------------------------
-------------S-----------------------S--------S---------------------------------
--------------------------------------------------------------------------------
-------------------------SSS--------------------------------S------------SSS----
----------------S---------------------------------------------------------------
-------------------------------------------------------S--S---------------------
----------------------------------S------S--------------------------------------
--------------S-----------------------------------------------------------------
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------------------------------------------------S-------------------------------
----------------------------S-------------S-----S----S---S-----S-------------SSS
-----------------SS-------------------------------------------------------S-----
---S------------------------------S-------------------------S---------------S---
S--S-----------------------------------------------------SSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_1056
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----------------------------------------------------------------------------TCTG
TTGGCCTGCCTTTGAA----------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------------------------------
>reverse_2954
--------------------------------------------------------------------------------
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-------------------------------------------------------------------------TGATTAG
CTGGTTCCACGCA-------------------------------------------------------------------
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------------------------------------------------------------------------
