>input_sequence_42536
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-----------------------ATGGCCGACGAGTGGTGGAGTGGTTCACAGAGGAGCCACGGGACGTCGGCGTGCTCG
GCCGCGCCACTCATGGACACGGGTCACGCAGCCACATGCGGCTGGACGTCCCCGGCCGCGGAGTCGACGAGCTCAATAAC
CTTCCAGGACCCCCACAGGAGCAGCAGTACTATCACTCATCCGCCTTCATCCGATGCCGCTTCCTCGCTTGGTGATGTAC
ACATGGACTGGACGCACGCCTTCTTGTAAGTTGCCTTCCATCTTCAATCTTTCATTCTTTCTTCTAGCTGCCTGTGCGGA
GGACTAACGCCCTTCTGTGATCGATTATTAATTAGGAGCGGGAGAAGCGACGCTAGCTTCCAAGCCGTGCTTCAAGACGA
CATGCCTGCGTCAATGACGACGAGGCCATTATTTCGACCTCATCAGCCGGCCGTCGACGAGGCCGTGATGAGCAATCCGT
TCAGGGACATGAGCCACAGCTTCAGCTTGCTCGACCAGGTGCCTGCAGCCTCGTCTCCGTACGGCACGGCGCCACTGCAA
GGCATGTTCGACACCACCGGGGCGTCGCACAACGTTTCGGTGTTGGGGGAATGCCAGTCATCCACCAGCTACGACGGCAC
GGCGGGGATGCAGTTAAATCAAGCGGCTACGCAGATGCTAGGCGGTGGCGCCCAACTGCAGTACTTGTCCGGGTCCGGCA
GCTACATGCCTTTCGGCGGCGCCCCTCTCTCGTCGCAGCTTCTCTTGCAAGCCCTACAACCCAAGACCAGCTACAGCTCT
AGCTCCAATTCCCTCATGGCGAAGGTAATTAACCACATGGAAAATATTAGTGTTTTACTACCAGAGGCCATACAGCTAGG
GTTTCGTTTAGATATGCATAACCTCAGTTTCTCCTGCAGTCTGCCGAGCACGCGTGCTCACCACCGGCGAGGAGAAGCGA
GCCTGACTCACCTGCCGCGGCGAAAAGGCCACGGATCGAGGCACCATCGCCGTTGCCCACGTTTAAGGTGCGGCGTGATC
GATCCGATTAAATTTCTAGATCTTGTGATCTTTCTGCATTTCAGGGCAACTTTTTGTTGCTTCGATCGATGGCTGGTGTT
TTCCTTTTGCGAGCATCGATGGACGATGACTTTTGGATTGCATAAAAATTTCTTTT-GTGCTGTGCTTTGGAGCTGCAGG
TGAGGAAAGAGAAGCTAGGGGACAGAATCACTGCGCTCCAGCAACTAGTCTCGCCTTTTGGAAAGGTATGAGTTCTTCTT
TCTGCTCTGAATCAACTCCCTATCTTTCCTCACCACCGTTCCAATTATCGGAGAGAACAAGTGCTCTTCTACTTAACCCG
TCTGAGATCGATAATGACCTAACTTATCGCTGGTGTCCTC----GCACTTTAGACCGATACCGCATCGGTTCTTCACGAG
GCCAACGAATACATCAAGTTCCTCCATGACCAAGTTGCGGTGAGTGTCCGAAATCACATGCCTTCCCTTGCTGCGTCGAC
ATTTCTTGTCC--ATTCCGGAACATCGCTTATAATTTGTTTAACACTGAACTCACTGCAGTCTCTGACCTACCCGTACTT
GAAGAATGTGAACCCGTTGCAGCAGTTCCAGCAGAAGGTAAGAAACTGAGTTTA--TATCAAATTTTCCATCTTATGTTT
TCGTGAATGCTTGGCTCTTGATGCAATTTTGCTTGGTAGGGTTCCGAGAATGCGAAGGACGACGGTGGCGAGCCGAAGAA
GGACCTCCGAAGCCGCGGCCTGTGCCTTGTGCCGGTAGCAACGACGTACACGGTTGCGAGCGAGACGGTGCCGGAATTCT
GGTACCCAACATTTGGAGGCACGTTTAGGTAG------------------------------------------------
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>chr3B_1_TraesCS3B01G353100
TGGCGCAACTTTTGGGCCGGAGGAGGATAATATTTACTCCACTAACCGTTTGGGAGTTCGGCTAAGTATGGTTAGGCGCC
TA-TTTGCTCCTCTAACCAATTACAGGGGATCGGCTAGAGTTGCTCTAAGGGATACTTGGTCGGCAAACTATCATAGGTG
TG----TCCTGGTTTCCTAAGGAGTCGTAACCTTACCGAACAAGTGAGATGTCATAATCTTGGAAGACCTAGAG----GT
ATGTGGAGGCAAGTCCACCGCCTTATGCCACATATATTTGGGTGCTATGTGAAATGAAGAATTACGTAGATCTACTGACA
TCGGTTTCAAGCCATCAAAGTCATATCTCTCTGCAAGAAAATATAGCAAAATATTTCAAAAAAAAATTGAAACTTTGTGG
GAATGATAAACAGCAAATGTTATAAGTGCTTGTAAAGTTTGGTGCTCAAATAACATACGAGGAGCTCCGTACGA------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------AAAAGACAAAATTACAAAATCTGCTCAA------------------ACAGTGCATTTATATTTTGA
CTAATTTTCAGTGATTTTGTCTTTTTTGTACGGAGCTCCTCGAATGTTATTTGACCACCAAACTTTGCAAGCACCCATAA
CATTTGTTGATGATCATTCTCACAAAGTTTCAGATTTTTTTAAAATGTTTCACTATATTTCTTGCTTGGGTGCACCGTGC
TGGGGCGTAGAAAAATCACTCTCCTATAAAATAGCTTCCAGAGTTGCCTAGCATAATTGAACAATTCAATAAATTCTTCT
CAACACAC--ATGGAACTAAAATAATACTCCTACTAAGGAAAGGTTAGACCCTGATGACTATTAAGCGACCCTCTTTGTC
CCCTTCCAATGGTCAGCCTC--CCTCACACAAGTCCAC--TAGCTTTGATGCTACAGCCCATACCACACTGTACCCTTCA
TATATACTCAGATTCCCCTCTCTCTTTCTCCCCCGTTCCATCCATTCCAACCTACTTCTACACCTC----------AAAC
CGCATCAAGATCCCTTCATCTCCATGGCCGACGAGTGGTGGAGTGGTTCACAGAGGAGCCACGGGACGTCGGCGTGCTCG
GCCGCGCCACTCATGGACACGGGTCACGCAGCCACATGCGGCTGGACGTCCCCGGCCGCGGAGTCGACGAGCTCAATAAC
CTTCCAGGACCCCCACAGGAGCAGCAGTACTATCACTCATCCGCCTTCATCCGATGCCGCTTCCTCGCTTGGTGATGTAC
ACATGGACTGGACGCACGCCTTCTTGTAAGTTGCCTTCCATCTTCAATCTTTCATTCTTTCTTCTAGCTGCCTGTGCGGA
GGACTAACGCCCTTCTGTGATCGATTATTAATTAGGAGCGGGAGAAGCGACGCTAGCTTCCAAGCCGTGCTTCAAGACGA
CATGCCTGCGTCAATGACGACGAGGCCATTATTTCGACCTCATCAGCCGGCCGTCGACGAGGCCGTGATGAGCAATCCGT
TCAGGGACATGAGCCACAGCTTCAGCTTGCTCGACCAGGTGCCTGCAGCCTCGTCTCCGTACGGCACGGCGCCACTGCAA
GGCATGTTCGACACCACCGGGGCGTCGCACAACGTTTCGGTGTTGGGGGAATGCCAGTCATCCACCAGCTACGACGGCAC
GGCGGGGATGCAGTTAAATCAAGCGGCTACGCAGATGCTAGGCGGTGGCGCCCAACTGCAGTACTTGTCCGGGTCCGGCA
GCTACATGCCTTTCGGCGGCGCCCCTCTCTCGTCGCAGCTTCTCTTGCAAGCCCTACAACCCAAGACCAGCTACAGCTCT
AGCTCCAATTCCCTCATGGCGAAGGTAATTAACCACATGGAAAATATTAGTGTTTTACTACCAGAGGCCATACAGCTAGG
GTTTCGTTTAGATATGCATAACCTCAGTTTCTCCTGCAGTCTGCCGAGCACGCGTGCTCACCACCGGCGAGGAGAAGCGA
GCCTGACTCACCTGCCGCGGCGAAAAGGCCACGGATCGAGGCACCATCGCCGTTGCCCACGTTTAAGGTGCGGCGTGATC
GATCCGATTAAATTTCTAGATCTTGTGATCTTTCTGCATTTCAGGGCAACTTTTTGTTGCTTCGATCGATGGCTGGTGTT
TTCCTTTTGCGAGCATCGATGGACGATGACTTTTGGATTGCATAAAAATTTCTTTT-GTGCTGTGCTTTGGAGCTGCAGG
TGAGGAAAGAGAAGCTAGGGGACAGAATCACTGCGCTCCAGCAACTAGTCTCGCCTTTTGGAAAGGTATGAGTTCTTCTT
TCTGCTCTGAATCAACTCCCTATCTTTCCTCACCACCGTTCCAATTATCGGAGAGAACAAGTGCTCTTCTACTTAACCCG
TCTGAGATCGATAATGACCTAACTTATCGCTGGTGTCCTC----GCACTTTAGACCGATACCGCATCGGTTCTTCACGAG
GCCAACGAATACATCAAGTTCCTCCATGACCAAGTTGCGGTGAGTGTCCGAAATCACATGCCTTCCCTTGCTGCGTCGAC
ATTTCTTGTCC--ATTCCGGAACATCGCTTATAATTTGTTTAACACTGAACTCACTGCAGTCTCTGACCTACCCGTACTT
GAAGAATGTGAACCCGTTGCAGCAGTTCCAGCAGAAGGTAAGAAACTGAGTTTA--TATCAAATTTTCCATCTTATGTTT
TCGTGAATGCTTGGCTCTTGATGCAATTTTGCTTGGTAGGGTTCCGAGAATGCGAAGGACGACGGTGGCGAGCCGAAGAA
GGACCTCCGAAGCCGCGGCCTGTGCCTTGTGCCGGTAGCAACGACGTACACGGTTGCGAGCGAGACGGTGCCGGAATTCT
GGTACCCAACATTTGGAGGCACGTTTAGGTAGACATATAAGGTAGTTTTAATTAGCTTTCAGCATGTACACGTGCTAAGC
AATCTGTACATGTCCAGATTACAAACAAACACAGTGCTGAGGCTAAAGCAAAGCAAAGCAAAGCCACATGTTGCT--AGT
ACTAAGATAATATGTATGTAAACGGTGATCATCAAACATAATATTAGTAGCTAGCCTGTGAAGAAAAAGCAAAGAGATAA
TCATATAAGCAATATGAAGCAACCAAAAGACATTTGGAAAGGCCACAAGGGGAGCTATGATATAATTATGAGGCTGAGCC
TTAAAAGACAGGCTAACGTAAATATAAAAATGTTCGGTCAGTGCCAAATGATTTGAGACTGACAACTAT--CGAGCAATT
ATACTCATGTATATACACAACTAAATGGAAAGGAA----TAATGCTACCGTTAGTTTTTTATCTACATATATTTGTGTGT
TGTGTATGACAGTC-GAAGCATGGAATTCGAAAGGAGGGGTTATGTTACTTAAGGATGACAAAGGGCCCTCTATGGATAG
AAAGATATTCTAAGGAACTATAAGTAATATAATCATATATCGTAGAACTTCCTATATAAACTTAAGAACAAATAAATCAA
TATGCGCCTTGGATTACTATTAAGTCTTGATTTTATTGCTTATTGGCTATTGGAGAAAAAACAATTCGCTCCCTGGGGCC
TGGGCACTTGCATGTGACCCATGGAAAACTAGGGTTCCCCCTCGAGAGCCACTGATACCTCCTCTTACCTTGCCAACATT
GGGGATGGCCACCCTACGTACCTCTCCCCGCCCAGACTCTAGTGGTTGAGAATTGCATTCATTGTGATATCTCAAGGAGA
ATAGGGTGAGCCTTTGTGGTGTTCATGTGTCTTCGTGCTAACACCCATCCTCCAATAGTGACTAGCCTCCCTCCCAGGAT
GTGAACACTGGGATGCATCATCTTCTTAGAAGTTTCGGTTATCCCTAACCCTCGCTCTCTAGTTTTGGTTTACTTTGGTC
A
>chr3D_1
TGGGGCAACTTTTGGGCCGGAGGAGGATAATATTTACTCCACTAACTGTTTGGGAGTTTGGCTAAGTATGGTTAAGCGCC
TATTTTGCTCCTCTAAACAATTACAGGG-ATCGGTTAGAGTTGCTCTAAGGGATATTTTGTCGGAAAACTATCATAGGTG
TGTCATTCCTGGTTTCCTAAGGAGTCGTAACCTTACCGAACAAGTGAGATGTCATAATCTTGGAAGACCTGGGGAGCCAT
AGGTGGAGGCAAGTCCACCGCCTTATACCACATGTATTTGGGTGCCATGCGAAACCAAGAAGGACGTAAATCTACTCACA
TCGGTTTCAAGCCATCAAAGCCATATCGCTTTGCAACATCCCGCCTAGATCGACCATCTAGAACTCTAGGAGTTACTCCC
AACGCTAGGAGACCCTCTATATTAATATTAATCTCATACAACACGACGTGTTCGGGTGATGGCGGCGGTTTGTCATGTAG
GGAAGCTGGGATGGCGGTCCTAGTGTATGGTGGAGGTGACATTTCCTCCTGCCTCGCTAGTGTCGTTTGTTGCGGACCTG
GTGCCCGACACCTAGATCCATCGATGATGGCGCCATGACGTGCGGCATCAATGCTCCGGTGTGCGTGCTAGCGAGGTGGT
AGCGTGTATTGGGGCTCTTCTCTCGAAACTCCGATACATAGCGAATAGAGGCTAGGTGGCAATCACCGGGGGTAGGCGTC
TCGTGTAGCGAATAGAGGCTAGGCGGCGATCACCGGGGGTATGTGGAACAGAAGTGGCTTCTGTTGTGGTGGCGGCGTGG
TGAACATCGGTGGACGCCGTCAATTCCCGGGAGGTTAAAGGCCCCTTTGGTGGCTACCGGTCGTTGTTCGGTGGCTGTTT
TTGGTAAGCTGAATAAATGAGAAAATTCCAACAGAAGTAGCATTTTGACAACATTTGGTTACATTTCAATCATATTTGGA
AAAATGTTGGTGTTGGTTGAAATCTGGTTAAAACCAAATGAGTGAGCTGGT-----------------------------
--------------------------------------------------------------------------------
-----------------------CTATTATATAGCTTTCCCGGTTGCGTAGCATAATTGAACAATAGC-TAAATTCTTCT
CAACATGCATATGGAACTAAAATAATACTCCTACTAAGGAAAAGTTAGACCCTGATGACTATTAAGCGACCCTCTTT---
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>chr3A_1
TGGTGCACCTTTTGGGCCGGAGGAGGATAATATTTACTCCACTAACTGTTTGGGAGTTTGGCTAAGTATGGTTAAGCGCC
TATTTTGCTCCTCTAACCAATTACATGG-ATGGGTTAGAGTTTCTCTAAGGGATACTTTGTCGGAAAACTATCATAGGTG
TGTCATTCCTGGTTTCCTAAGGAGTCGTAACCTTACCGAACAAGTGAGATGTCATAATCTTGGAAGACCTGGGGAGCAGT
AGGTGGAGGCAAGTCCACCGCCTTATACCACATGTATTTGGGTGCCATGCGAAACCAAGAAGGCC---------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------GAAAATTCCAACAGAAGTAGCATTTTGACAACATTTGGTTACATTTCAATCATATTTGGA
AAAATGTTGGTGTTGGTTGAAATCTGGTTAAAACCAAATGAGTGAGCTGGT-----------------------------
--------------------------------------------------------------------------------
-----------------------CTATTATATAGCTTTCCCGGTTGCGTAGCATAATTGAACAACAGC-TAAATTCTTCT
CAACATGC--ATGGAACTAAAATAATACTCCTACTAAGGAAAAGTTAGACCCTGATGACCATTAAGCGACCCTCTTTGTC
CCCTTCCAATGGTCAGCCTC--CCTCACACAAGTCCACTATAGCTTTGATGCTACAGCCCATACCACACTGTACCCTTCA
TATATACTCAGATTCCCCTCTCTCTTTCTCCCCCGTTCCATCCATTCCAACCTACTTCTACACCTC----------AAAC
CGCATCAAGATCCCTTCATCTCCATGGCCGACGAGTGGTGGAGTGGTTCACAGAGGAGCCACGGGACGTCGGCGTGCTCC
GCCGCGCCACTCATGGACACGGGTCACGCAGCCACATGCGGCTGGACGTCCCCGGCCGCGGAGTCGACGAGCTCAATAAC
CTTCCAGGATCCCCACAGGAGCAGCAGTACTATCGCTCATCAGCCTTCATCCGATGCCGCTTCCTCGATTGGTGATGCAC
ACATGGACTGGACGCACGCCTTCTTGTAAGTAGCCTTCCATCTTCCA--------TCTTTCTTCTAGCTGCCCGTGTGGA
TGACTAAGGTCCTCGCTTGATCGAGTTTC----AGGAGCGGGAGAAGCGACGCTAGCTTCCAAGCCGTGCTTCAAGACGA
CATGCCGGCGTCAATGACGACGAGGCCCTTATTTCGTGCTCATCAGCCGGCCGTCGACGAGGCCGTGATGAGCAATCCGT
TCAGGGACATGAGCCACAGCTTCAGCTTGCTCGACCAGGTGCCTGCAGCGTCGTCTCCGTACGGCACGGCGCCACTGCAA
GGCATGTTCGACAACGCCGGGGCGTCGCGCAACGTTTCGGTGTTGGGGGAGTGCCAGTCATCCACCAGCTACGACGGCAC
GGCGGCGATGCAGTTAAATCAAGCGGCGACGCAGATGCTAGGCGGTGGCGCCCAACTGCAGTACTTGTCCGGGTCCGGCG
GCTACTTGCCTTTCGGCGGCGCCCCTCTATCGTCGCAGCTTCTCTTGCAAGCCCTACAGCCCAAGACCAGCTACAGCTCT
AGCTCCAATACCCTCATGGCGAAGGTAATTAACCACATGGAGAATATTAGTAGTTTACTACCAGAGGCCATACAGCTAGG
GTTTCATTAAGCTATGCATAACCTCAGTTTCTCCTGCAGTTTGCCGAGCACGCGTGCTCACCGCCGGTGAGGAGAAGCGA
GCCCGACTCGCCTGCCGCGGCGAAAAGGCCACGGATCGAGGCGCCGTCGCCGTTGCCCACGTTTAAGGTGCGGCCCGATC
GATCCGAG--------TAGATTTGTAGATCTTTCTGCATTTCAGGGTCACTTTTTGTTGCTTCGATCGTTGGCTGGTGTT
TTCCTTTTGCGAGCATCGATGGACGATGACTTTTGGATTGCATAAAAATTTCTTTT--------------GAGCTGCAGG
TGAGGAAAGAGAAGCTAGGGGACAGAATCACTGCGCTCCAGCAATTAGTCTCGCCTTTTGGAAAGGTATTAGTTCTTCTT
TCTGCTCTGAATCAACTCCCTATCTTTCCTCGCCACCGTTCCAATTATCGGAGAGAACAAGTGCTCTTCTACTGAACCCG
TCTGAGATCGATAATGACCTAACTTATCGCTGGTGTCCTCGCATGCACTTTAGACCGATACCGCATCGGTTCTTCACGAG
GCCAACGAATACATCAAGTTCCTCCATGACCAAGTTGCGGTGAGTGCCCAAAATCACCACGCCTGCCTTGCTGCGTCCAC
ATTTCTTGTTCATATTCCGGAACATCGCTTATAAATTGCTCAACACTGAACTCCCTGCAGTCTCTGACCTATCCGTACTT
GAAGAATGTGAACCCGTTGCAGCAGTTCCAGCAGAAGGTAAGAAACTGAGTTTA--TATCAATTTGTCCATCTTATATGT
TTC-TGTTGCTTGGCTGTTGATGACA-TTTGCTTGGTAGGGTTCCGAGAATGCGAAGGACGATGGTGGCGAGCCGAAGAA
GGACCTCCGAAGCCGAGGCCTGTGCCTTGTGCCGGTAGCAACGACGTACACGGTTGCGAGCGAGACGGTGCCGGAATTCT
GGTACCCAACATTTGGAGGCACGTTTAGGTAGAGATATAAGGTAGTTTTAATTAGCTTTCAGCATGTACACGTGCTAAGC
AATTTGTACATGTCCAGATTACAAACAAACACAGTGTTGAGGCTAAAGCAAAGCAA-----AGGCGCATGTTGCTAGAGT
ACTAAGATAGTATGTATGTAAACGGTGATCATTAAACATAATATTAGTAGCTACCCTGTGAAGAAAAAGCAAATAGATAA
TGATCCAAGCA--ATGAAGAAATCAAAAGATATTTGGAAAGGCCAAAAGGGGAGCTATAATATAAT--------------
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>chr3D_826
TTTGTC--------------------------------------------------------------------------
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-------------------------------------------------------------------------------C
CCCTTCCAATGGTCAGCCTCTCCCTCACACAAGTCCAC--TAGCTTTGATGCTACAGCCCATACCACACTGTACCCTTCA
TATATACTCAGATTCCCCTCTCTCTCTCTCCCCCGTTCCATCCATTCCAACCTACTTCTACACCTCAAACTCCCTCAAAC
CGCATCAAGATCCCTTCATCTCCATGGCCGACGAGTGGTGGAGTGGTTCACAGAGGAGCCACGGGACGTCGGCGTGCTCC
GCCGCGCCACTCATGGACACGGGTCACGCAGCCACATGCGGCTGGACGTCCCCGGCCGCGGAGTCGACGAGCTCAACAAC
CTTCCAGGATCCCCACAGGAGCAGCAGTACTATCACTCACCAGCCTTCATCCGATGCCGCTTCCTCGCTTGGTGATGCAC
ACATGGACTGGACGCACGCCTTCTTGTAAGTTGTCTTCCATCTTCCA--------TCTTTCTTCTAGCTGCCCGTGCGGA
TGACTAAGGTACTCGCATGATCGAGTTTTAATTAGGAGCGGGAGAAGCGACGCTAGCTTCCAAGCCGTGCTTCAGGACGA
TACGCTGGCGTCAATGACGGCGCGGCCCTTATTTCGAGCTCATCAGCCGGCGCTGGACGAGGCCGTGATGAGCAATCCGT
TCAGGGCGATGAGCCACAGCTTCAGCTTGCTCGACCAGGTGCCTGCAGCGTCGTCTCCGTACGGCACGGCGCCACTGCAA
GGTATGTTCGATAGCACCGGGGCGTCGCACAACGTATCGGTGTTGGGGGAGTGCCAGTCGTCGACCAGCTATGGCGGCAC
GGCGGCGATGCACTTAAATCAAGCGGCGACGCAGATGCTAGGCGGTGGCGCCCAACTGCAGTACTTGTCCGGGTCCGGCG
GCTTCATGCCTTTCGGCGGCGCCCCTCTGTCGTCGCAGCTTCTCTTGCAAGCCCTACAGCCCAAGACCAGCTACAGCTCT
AGCTCCAATACCCTCATGGCGAAGGTAATTAACCACATGGAAAATATCAGTAGTTTACTGCCACTGGCCATACAGCTAGG
GTTTCGTTAAGCTATGCATAACCTCAGTTTCTCCTGCAGTCTGCCGAGCACGCGTGCTCACCGCCGGCGAGGAGAAGCGA
GCCCGACTCGCCCGCCGCGGCGAAAAGGCCACGGATCGAGGCGCCGTCGCCGTTGCCCACGTTTAAGGTGCGGCCCGATC
GATCCGAG--------TAGATTTGTAGATCTTTCTGCATTTCAGGGTCACTTTTTGTTACTTCGATCGATGGCTGGTGTT
TTCCTTTTGCGAGCATAGATGGACGATGACTTTTGGATTGCATAAAAATTTCTTTTTGTGCTGTGCTTTGGAGCTGCAGG
TGAGGAAAGAGAAGCTAGGGGACAGAATCACTGCGCTCCAGCAACTAGTCTCGCCTTTTGGAAAGGTATTGGTTCTTCTT
TCTGCTCTGAATCAACTCCCTATCTTCCCTCACCACCGTTCCAATTATCGGAGAGAACAAGTGCTCTTCTACTGAACCCG
TCTGAGATCGATAATGACCTAACTTATCGCTGGTGCCCTC----GCACTTTAGACCGATACCGCATCGGTTCTTCACGAG
GCCAACGAATACATCAAGTTCCTCCATGACCAAGTTGCGGTGAGTGTCCCAAATCACATGCCTTCCCTTGCTGCTTCGAC
ATTTCTTGTCCA----CCGGAACATCGCTTATAAATTGCTGAACACTGAACTCACTGCAGTCTCTGACCTACCCGTACTT
GAAGAATGTGAACCCGTTGCAGCAGTTCCAGCAGAAGGTAAGAAACATGAGTTTATTATCAATTTGTCCATCTTATGTTT
CCGTTGCTGCGTGGCTGCTCATGCCATTTTGCTTGGTAGGGTTCCGAGAATGCGAAGGACGACGGCGGCGAGCCGAAGAA
GGACCTCCGAAGCCGAGGCCTGTGCCTTGTGCCGGTAGCAACGACGTACACGGTTGCGAGCGAGACGGTGCCGGAATTCT
GGTACCCAACATTTGGAGGCACGTTTAGGTAGAGATATAAGGTAGTTTTAATTAGCTTTCAGCATGTACACGTGCTAAGA
AATTTGTACATGCCCAGATTACAAACAAACACAGTGTTGAGGCTAAAGTAAAGCAA-----AGCCACATGTTGCTAGAGT
ACTAAGATAGTATGTATGTAAACGGTGATCATCAAACATAATATTAGTAGCTACCCTGTGAAGAAAAAGCAAATAGATAA
TCATCCAAGCA--ATGAAGCAATCAAAAGATATTTGGAAAGGCCAAAAGGGGAGCTATAATATAATTATGAGGCTGAGCC
TTAAAAGACAGGCTAACGTAAATATAAAAATGTTGGGCCGGTGCCAAATGATTTGAGACTGACAACTATATCGAGCAATT
ATACTCATGTATATACACAACTAAATGGAAAGGAATTAATAATGCCACCGGTAGTTTTTAAGG-ACGTATATTTGTGCGT
TGTGTATGACAGTC-GAAGTGTGGAATTCAAAAGGAGGGGTTATATTACTTAAAGATGACAAAGGACCCTCTACGGATAG
AAAGATATACTAAGGAACTTCAAGTAATATAATCATATACCATGGAACTTCCTATGTAAACTTTAGAACAAATAAATCAA
CGTGCGCCTTGGATTCCTATTAAGTCT-----------------------------------------------------
--------------TGACCCATGGGCAACTAGGGTTCCCCCTCCAGAGCCACCGACACCTCCTCTTACCTTGCCAACATT
GGGGATGGCCACCCTA----CCTCTCCCCGTCCAGACTCTAGTGGTTGAGAATTGCATCCATTATGATATCTCAAGGAGA
ATAGGGTGAGCCTTCGTTGTGTTCATGTGCCTTCG---------------------------------------------
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>chr3A_3099
AGCTCA--------------------------------------------------------------------------
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---------------------------------------------------------TAATATAATTATGAGGCTGAGCC
TTAAAATACAGGCTAACGTAAATATAAAAATGTTGGGCAGGTGCCAAATGACTTGGGACTGACAACTATATCGAACAATT
ATACTCATGTATATACACAACTAAATGGAAAGGAA----TAACGTCACTGGTAGTTTTTAAGG-ATGTATATTTGTGTGT
TGTGTATGACAGTCGGAAGTGTGGAATTCGAAAGGAGGGGTTATATTACTTAAGGATGAAAAAGGGCCCTCTACGGATAG
AAAGATATACTAAGGAACTTCAAGTAATATAACCATATATCATGGAACTTCCTATATAAAATTTAGAACAAA-AAATCAA
CATGGGCCTTGAATTCCTATTAAGTCT-----------------------------------------------------
--------------TGACCCAT--GCAACTAGGGTTCCCCCTCGAGAGCCACCTCTACCTCCTCTTACCTTGCCAACATT
GGGGATGTCCACCCTA----CCTCTCCCCGTCTAGACTCTAGTGGTTGAGAATTGCATTCGTTGTGATATCTCAAGGAGA
ATAGGGTGAGCCTTCATCGTGTTCATGTGCCTTCGTAGTAAC--------------------------------------
--------------------------------------------------------------------------------
-
>SNPs
---S------------------------------------------S-----------S---------------S-----
----------------------------S-----S-----------------------S-----S---------------
----------------------------------------------------------------------S-S-------
-S------------------------S------S-----------S---S----SS-----SS-----S-------S---
--------------------S------S--S-----S-SSSSSSSSSS-SSS-SSSSSS-S--SSS-S-S-SS-SSSSSS
S-SSSSSSS-S-S-SSS-S-SS---SSSSSSSSSS-SSSSSSSSSS-SSS-SSSSSSSSS--S-SSSSS-SSSS------
--------------------------------------------------------------------------------
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-----------------S--S------S---S-SSS-SSSS----------------------S-S--S-S------S--
SS---S--SSSSSSSS---SSS-S-SSS--SSSSSSSSSSS-SSS-S-SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSS----S-S-------S-SSS-----S-----------------SSSS-----------
-----SS-----------------------------------S-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------S
--------------------------------------------------------------------------------
---------S-------------------------------S-----------------------------------S--
---------------------------------------------S-SSSSSSSS-----------------S-------
S------S-S---SSSS-------S-S-----------------------------------------------------
------S--------------------S---------S------------------------------------------
-------------------------------------------------S------------------------------
-------------S------------------------------------S-----------------------------
-----S---------------------S---------------------------------------------------S
----------------------------S-----------------------------S---------------------
---------S-----------------------------------------SS---------------------------
--------S--S--------------------------------------------------S-----------------
---S-----S--------------------------------S--S----------------------------SS----
-------SSSSSSSSS-----S-SSS--------------------SS--------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------S----------
-------------------------------------------------------------------------S------
--------------------------------------------------------------------------------
-------------------------------------------------S------------------------------
----------------------------------S---S-S---------------------------------------
--------------------------------------------------------------S--S--------------
----SSS---------S-------S-------------------------------------------------------
---------------S----------------------------------------------------------------
---------------------------------S----------------------------------------------
---S--------------------------------S-------------------SSSSS-------------------
---------S-------------------------------------------S-------------------S------
----SS-----SS---------S-------S--------------S------------S---------------------
----------------------------------S--S-S----------------------------------------
---------------------------------------------S----S--------S-SSS--S-------------
-------------------SS-----------------------S----------------------------S------
--------S----------SS--------------------S-S-------------------S----------------
S--------------S-----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSS----------SS--------------------------S---------------------------
----------------SSSS----------S-------------------------------------------------
--------------S--S-----------S------SS----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
S
>forward_474
--------------------------------------------------------------------------------
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------------------------------------------------------ATACGAGGAGCTCCGTACGA------
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>reverse_1761
--------------------------------------------------------------------------------
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GGACTAACGCCCTTCTGTGA------------------------------------------------------------
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>forward_1037
--------------------------------------------------------------------------------
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---------------------------------------------------------CCAAACTTTGCAAGCACCCA---
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>reverse_2051
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------ATGCCAGTCATCCACCAGC-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-
>forward_1847
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------TGCTTCAAGACGA
CATGCCT-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-
>reverse_3418
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------GCAAAGCCACATGTTGCTAGT--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-
