>input_sequence_42518
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----------------------------------------------------------------------------TGCC
AGTGCCAAAAGTCAACCCCATCCCGCGCCGGCCACCACCACGCGTCCGTCCTACCTAGCT----CACTTCGTCAAAGCTC
TCCAAGCTCAAATCCCTGGTCGCCGTTCATGTGCGGCCTGCTTCTGCGCATGGAGCACCTCAACGACTGGGACCTGCAGG
CCGTCGTCAGGAGCTGCGCCACCTT---CTCCTCCCGCCACCCCC------AGGACCGCGCCGGTCCTCCTCCGGGGACC
GCCGCGGCGCCGGTGGCGGAGACGACGGTCAAGCGGGAGCCGCGCGACGTGGCCCGGCCAGCAGCGGCGGCCAAGGACG-
-----------------CGTCGTCGCTGTACGGCCTGGAGTACCTGGACTTGGATCACAAGCCCTTCTTGCTGTCGGCGC
CGTCGTCGCAGTCGTGGGCGGCGGTGGATGACCGCCACGAGATGATGATCTCTTTCCCCGCGGCGGCGTCCACGTCCGGC
GTGCGGCCGCGGGTGCCGCCTGGCCGGAAGCCCGGCATACGAAGCAGCACCCCACGCCCGAAAAGAAGGTACGTATATGC
TCCTACCA--AGTTGATTTGTGCACCCGGCCCGATCGCTTATGCAGCGCGATTTGGATCGGAGAAGCTTGCAGCCTGCTG
ATTGTGATTTTGTTTGGTGGTGG---------TGGTGATGGTGAGCAGCAAGAAGAGCCAGCTGAAGAAGGTGGTGTGCG
AGGTGCCGGTGGCCGACGGCGGCGTCTCCTCCGACCTTTGGGCATGGCGAAAGTACGGTCAAAAGCCCATCAAAGGCTCG
CCTTATCCCCGGTAATTAACTACTATAACCACTTCCACCGGCCCGTTTCCACGCGTTACTGTCGTCTCGTCGATGCACTA
GCTA--CCCGGTGCAC--------AGCCTCGAGTCCAGTCACTACCGCT--------------------ACTACTTTCTG
TTAATACATTCGCAATAACTGATTTCTCATACGATGAAGATTTACACTGATTTCATCAAACCTTTGGTCATTTGG----A
TATACTCCTAATTACGAACAGTATAGTA---GTAGTACATATGAGATATGACCTGGTGCTTAGAACTTGCTAGGAGTAGA
TTTTAGCCGCGCACCTTGCCAATTTGGCATCAAGTTTTGGCCAACCACACACCACATGTACTTTTGCAGTAC-AACACGC
ATGCTCCGGAAGGCACTCAAGTACTCCTCCGTACCAGTACCTGTCTTAATTACTAGTAGTAGAAGCACCGCTAGTCCTGG
TCTGCATACTCCTAAACTTTGTTAGCTTTGTGGTGACAGGGGATACTACAAGTGTAGCAGCATGAAGGGGTGCATGGCCC
GGAAACTGGTGGAGCGCAGCCCGGCCAAGCCCGGTGTGCTCGTCATCACCTACATGGCCGACCACTGCCACCCGGTGCCG
ACGCAGATCAACGCGCTCGCCGGCACCACCCGCCACAAGACCACCCCTGCCGAGGGCCACGCGC---CGACGACCACGAC
GTCGCCCAAGAGCCACGGCGATGCCCACGAGGCGGTGAGGTGCGACGACGAAAGCAACGAGACGTCGTCCATGGCTGTGG
ACGGCGCCACTGAGGACGCGGCGGGGGATGACGGCGGCGAGTTCTGGCCGACGGAGCTGGACCTGGACGAGTTGTTGGCG
CCCGTGGATGGCGATCTGGATCATGTCTTCGACGAGGACGACGCCCTGGGACGACGGCTCTCGCTATAGCTGGAGAGGAA
ATTTGTAGCTATAACCTATAGGCACCACCGATTGACAACTTTTTTGCCCCTTTGTTCACCTATTTGCGAAGGAGGGGTCA
CGCAGCAGGCAAGAAGCCATGTATATGCGTTTGATGTGTGT-TTTGTGCTTGATCCCTCTCAACAAAAT-GATG-AAGAT
TTC-----------------------------------------------------------------------------
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>chr3D_1_TraesCS3D01G227400
AGTGGCGATCGGCCAGCCATCGATAACGTGGACCGACCGAACCGTACCTGTCATTCAACGCAAGGCG--------GGCAG
GCACACTTAGTTATCCATATCTTCCAATTGTCCATCGCTCTCGTGATGCAAAATTTGCGCGTGGGCGTCCGTCCCAAAAA
TTAATGGGGCCGAGCGGAGCGGAGCGCGGCGCGTGCAGCCCGGGCCCCCGCGTGCGCGCACTAGGCTAGACCAGTAA---
---GTAGGCAACTACACTAGAGAGAG----CAGCGCGCGGCGGCAACAGCGGTGGAGCGCGGCGAGCACGACCACCGGCT
TCCCGAGGGA-GGGCCGATCCCTCTCGCGTCCTTGTCGTGGCCAAAAGACCCTCCTCCACTCCACCGTCGCTTTGCCACT
TATCCCCGCGCCGATTGGAGCCCCACGCGATACCCC-GGACGGGTTCAGAGATCTGACGCATATGGCCGAGATTTTGTGC
CACGGCTCTCTCTCTCTCTCTGCCCTTTGACATTTACACAAGGTCAGATCCAGAATAACCGACGCCTGACGCGCCCAAGT
GGCTGGTCAAGCGCAGCCAATAATATAGGATCGGCATAAAGAGTCAAGCAAGCGC-AAAGTTAATTCGCGGCTTCCATAT
TCCCCT-----GCGGCCCCTTTAATGACGCCACAGAGTTCCATCCAAAGATTCCACCCTTTTTCT----TGTACTACCTC
CTCTCTCCCTTTTGACATTTGGAGCAAAGTCAAAGAAAACAATAGGGAGGAGAAGCCAAGGCCCTTTTGACAAGTGCGTA
GCATAGAGCCCCGCCCCAGTATACA--ATACAATGCGGAGTGGCTGATCATTTCAAATCCGGACGCGATCTTCTCTCTTA
TCCCCTGC----GCTGCTGCGAAGCGCGCGCCGTGCCCACCACTTGCCTTTGACTTTACAGGGATCGAGTCATCCTCCTC
GTGCCACTCCAGGGTACGCGTCTGGAGTAGTATGTACAGGCGTACGCGTATATATTTGCGCTTCCCCGGACCGGCCTGCC
AGTGCCAAAAGTCAACCCCATCCCGCGCCGGCCACCACCACGCGTCCGTCCTACCTAGCT----CACTTCGTCAAAGCTC
TCCAAGCTCAAATCCCTGGTCGCCGTTCATGTGCGGCCTGCTTCTGCGCATGGAGCACCTCAACGACTGGGACCTGCAGG
CCGTCGTCAGGAGCTGCGCCACCTT---CTCCTCCCGCCACCCCC------AGGACCGCGCCGGTCCTCCTCCGGGGACC
GCCGCGGCGCCGGTGGCGGAGACGACGGTCAAGCGGGAGCCGCGCGACGTGGCCCGGCCAGCAGCGGCGGCCAAGGACG-
-----------------CGTCGTCGCTGTACGGCCTGGAGTACCTGGACTTGGATCACAAGCCCTTCTTGCTGTCGGCGC
CGTCGTCGCAGTCGTGGGCGGCGGTGGATGACCGCCACGAGATGATGATCTCTTTCCCCGCGGCGGCGTCCACGTCCGGC
GTGCGGCCGCGGGTGCCGCCTGGCCGGAAGCCCGGCATACGAAGCAGCACCCCACGCCCGAAAAGAAGGTACGTATATGC
TCCTACCA--AGTTGATTTGTGCACCCGGCCCGATCGCTTATGCAGCGCGATTTGGATCGGAGAAGCTTGCAGCCTGCTG
ATTGTGATTTTGTTTGGTGGTGG---------TGGTGATGGTGAGCAGCAAGAAGAGCCAGCTGAAGAAGGTGGTGTGCG
AGGTGCCGGTGGCCGACGGCGGCGTCTCCTCCGACCTTTGGGCATGGCGAAAGTACGGTCAAAAGCCCATCAAAGGCTCG
CCTTATCCCCGGTAATTAACTACTATAACCACTTCCACCGGCCCGTTTCCACGCGTTACTGTCGTCTCGTCGATGCACTA
GCTA--CCCGGTGCAC--------AGCCTCGAGTCCAGTCACTACCGCT--------------------ACTACTTTCTG
TTAATACATTCGCAATAACTGATTTCTCATACGATGAAGATTTACACTGATTTCATCAAACCTTTGGTCATTTGG----A
TATACTCCTAATTACGAACAGTATAGTA---GTAGTACATATGAGATATGACCTGGTGCTTAGAACTTGCTAGGAGTAGA
TTTTAGCCGCGCACCTTGCCAATTTGGCATCAAGTTTTGGCCAACCACACACCACATGTACTTTTGCAGTAC-AACACGC
ATGCTCCGGAAGGCACTCAAGTACTCCTCCGTACCAGTACCTGTCTTAATTACTAGTAGTAGAAGCACCGCTAGTCCTGG
TCTGCATACTCCTAAACTTTGTTAGCTTTGTGGTGACAGGGGATACTACAAGTGTAGCAGCATGAAGGGGTGCATGGCCC
GGAAACTGGTGGAGCGCAGCCCGGCCAAGCCCGGTGTGCTCGTCATCACCTACATGGCCGACCACTGCCACCCGGTGCCG
ACGCAGATCAACGCGCTCGCCGGCACCACCCGCCACAAGACCACCCCTGCCGAGGGCCACGCGC---CGACGACCACGAC
GTCGCCCAAGAGCCACGGCGATGCCCACGAGGCGGTGAGGTGCGACGACGAAAGCAACGAGACGTCGTCCATGGCTGTGG
ACGGCGCCACTGAGGACGCGGCGGGGGATGACGGCGGCGAGTTCTGGCCGACGGAGCTGGACCTGGACGAGTTGTTGGCG
CCCGTGGATGGCGATCTGGATCATGTCTTCGACGAGGACGACGCCCTGGGACGACGGCTCTCGCTATAGCTGGAGAGGAA
ATTTGTAGCTATAACCTATAGGCACCACCGATTGACAACTTTTTTGCCCCTTTGTTCACCTATTTGCGAAGGAGGGGTCA
CGCAGCAGGCAAGAAGCCATGTATATGCGTTTGATGTGTGT-TTTGTGCTTGATCCCTCTCAACAAAAT-GATG-AAGAT
TTCTTATGTAGCTCCAGTCAACGGCTGCCTACTAACTACTAGTACAATAGTATTGAGTCTTG------------------
-------------------------------------------TATACATGTAATTATAGTTCATCAAAGCCTTGACCAC
ACCGAGCCAACAAGTGCTTGGCACCTGGTCGTTGGATGTGCGTGATACCTCTCGGCGGTTGCCTCCTCAACGCATGGGCG
CCTGGTCGAGCGCTAATGCAATGGTTTTCTCGGTAGAAAAAAAGGCAGCGCTCGTTAAACAGCTCAGAAGAAAGTAAAAA
AAAAACTAAGCGCCCGATGGCAGCCCTGGCATCGACGCAGCCAGGAAGTGAGTCCTAGCGCCTGTCATTATAGTCCATGC
GAGCGGATCTGATGCGGCGCCCGGGAGATGGCGAGGTGGAGGAAGAGGGCGCCGAGAAGGGTCGCTGTAAAGGAGGAGGA
GGGCGCGGGGAGGAGGGCCGGTGCGGATCTGGCCGGCGTAGGGCTGGGCAGCGGTCCGGCGGTGGTAGTGGCGCGGATCT
GGCGCGCTGCCGCCACGAGGGCCCGAGTTCCGCCCCGTGCTGCTCCTGGCCTGGCGCGGAGGTGGGCGCCGCAAAGGGCG
GCGTCGGCACTGCACTGGGCGGCGAGTGGAGGGCGTCGAGGGCACTGATGGGCCGCGCTGGATCTGGGAGGGCTGCGCTT
GCTGGAGCAGGGAGGCTCCAGCCGTGGTAGATGCGGGATGCGGGGCCCGATCTGGCCTCTGCATGCTCGCCGTGGGGAGG
TGGACCATGCCTTCATGGCTTCAACAACAAGGTGCT---GCGGCGGCGGTGTGAGACGACATGGACGAGCTCCGTAGGGC
TTGAGCGGAGGTGTGCGACGATACAGACGAAAGTCCTGCACAACAAGAGCCGGTGCCGATGGCGCCTGAGGGTGTCATTT
TCCCCCTTGGAGGCGCCACCAAGGTGTGTCGGCATCTTCCTCGGGCTTGGTTGGTAGTGTCTCCGGGCGAAAGCCTAGGT
CCGG--TTGGATCGGCGTGATGACGGCGT
>chr3A_1
AGTGGCGATCGGCCAGCCATCGATAACGTGGACGGACCGAAGCGTACCTGTCATTCAACGCAAGGCAGGCAGGCAGGCAG
GCACACTTAGTTATCCATATCTTCCAATTGTTCGTCGCTCTCGTGATGCAAAATTTGCGCGTGGGCGTCCGCCCCAAAAA
CTAATGGGGCCGAGCGGAGCGCGGCGCG-----TGCAGCCCGGGCCCCCGCGTGCGCGCACTAGGCTAGACCAGT-A---
---GTAGGCAACTACACTAGAGAGAGAGAGCAGCGCGCGGCAGCAACAGCGGTGGAGCGCGGCGAGCACGACCACCGGCT
TCCCGAGGGCCGGGCCGATCCCTCTCGCGTCCTTGTCGTGGCCAAAAGACCCTCCTCCACTCCACCGTCGCTTTGCCACT
TATCCCCGCGCCGATTGGAGCCCCACGCGATACCCCCGGACGGGTTCAGAGATCTGACGCATATGGCCGAGATTTTGTGC
CACGCCTCTCC--CTCTCTCTGCCCTTTGACATTTACACAAGGTCAGATCCAGAATAACCGACGCCTGACGCGCCCAAGT
GGCTGGTCAAGCGCAGCCAATAATATAGGATGGGCATAAAGAGTCAAGCAAGCTTTAAAGTTAATTCGCGGCTTCCATAT
TCCCCTCCCCTGCGGCCCCTTTAATGACGCCACAGAGTTCCATCCAAAGATTCCACCCTTTTTCT----TCTAGCTTGCC
CTCTCTCCCTTTTGACATTTGGAGCAAAGTCAAAGAAAACAATAGGGAGGAGAAGCCAAGGCCCTATTGACAAGTGCATA
GCATAGAGCCCCGCCCCAGTATACA--ATACAATGCCGAGTGGCTGATCATTTCAAATCCGGACGCGATCTTCTCCCTTA
TCCC---------CTGCTGCGAAGCGCGCGCCGTGCCCACCACTTGCCTTTGACTTTACAGGGATCGAGTCATCCCCCTC
GTGCCACTCCAGAGTACGCGTCTGG---AGTATGTACAGGCGTACGCGTATATATTTGCGCTTCCCCGGACCGGCCTGCC
AGTGCCAAAAGTCAACCCCATCCCGCCCCGGCCACCACCACGCGTCCGTCCTACCTAGCTAGCTCACTTCGTCAAACCTC
TCCAAGCTCAAATCCCCGGTCGCCGTTCATGTGCGGCCTGCTTCTGCGCATGGAGCACCTCAACGACTGGGACCTGCAGG
CCGTAGTCAGGAGCTGCGCCACCTTCTCCTCCTCCCGCCACCCCC------AGGACCGCGCCGGTCCTCCTCCGGGCACC
GCCGCGGCGCCGGTGCCGGAGACGCCGGTCAAGCGGGAGCCGCGCGACGTGGTCCGGCC------------------CG-
-----------------CGTCGTCGCCGTACGGCCTCGAGTACCTGGACCTGGATCACAAGCCCTTCCTGCTGTCGGCGC
CGTCGTCGCAGTCGTGGGCGGCGGTGGACGACCGCCACGAGATGATGATCTCTTTCCCCGCGGCGGCGTCCACGTCCGGC
GTGCGCCCGCGGGTGCCGCCTGGCCGGAAGCCCGGCATGCGAAGCAGCACCCCACGCCCGAAAAGAAGGTACGTACTACT
ATATACCTATAGTTGATTTGTGCACCCGGCCCGATCGCTTATGCAGCGCGATTTGGATCGGAGAAGCTTGCAGCCTGCTG
ATTGTGATTTTGTTTGGTGGTGGTGATGGTGGCGGC------GAGCAGCAAGAAGAGCCAGCTGAAGAAGGTGGTGTGCG
AGGTGCCGGTGGCCGACGGCGGCGTCTCCTCCGACCTTTGGGCATGGCGAAAGTACGGTCAAAAGCCCATCAAGGGCTCG
CCTTATCCCCGGTAATTAACTACTACAACCACTTCCACCGGCCCGTTTCCATGCGTTACTGTCGTCTCGTCGATGCACTA
GCTCCCCCCCGTGCAC--------AGCCTTGAGACCAGTCACTACCGCT--------------------AGTACCTTCTG
TTAATAGATTCGCAATAACTGATTTCTCACACGATGAACATTTACACGGATTTCATCAAACCTTTGGTCATTTGGATATA
TATACTCCTAATTACAAACAGTATAGTACTGGTAGTACATATGA-------CCTGGTGCTTAGAACTTGCTAGGAGTAGA
TTTTAGCCGCGCATCTTGC-AATTTGGCATAAG--TTTTGGCCACTACACGTCACATGTACTTTTGCAGTACAAACACGC
ATGCTCCGGAAGGTACTCAAGTACTCCTCCGTACCAGTACCTATCTTAATTACT--------------------------
-------ACTCCTAACCTTTGTTAGCTTTGTGGTCACAGGGGATACTACAAGTGTAGCAGCATGAAGGGGTGCATGGCCC
GGAAACTGGTGGAGCGCAGCCCGGCCAAGCCCGGTGTGCTCGTCATCACCTACATGGCCGACCACTGCCACCCGGTGCCG
ACGCAGATCAACGCGCTCGCCGGCACCACCCGCCACAAGACCACCCCTGCCGACGGCCACGCAGGGACGACGACCACGAC
GTCGCCCAAGAGCCACGGCGATGCCCACGAGGCGGTGAGGTGCGACGACGAAAGCAACGAGACGTCGTCCATGGCGGTGG
ACGGTGCCACTGAGGACGCGGCGGGGGATGACGGCGGCGAGTTCTGGCCGACGGAGCTGGACCTGGACGAGTTGTTGGCG
CCCGTGGATGGCGATCTGGATCATGTCTTCGACGAGGACGACGCCCTGGGACGACGGCTCTCGCTATAGCTGGAGAGGAA
ATTTGTAGCTATAACCTATAGGCACCACCGATTGACAACTTTTTTGCCCCTGTGTTCACATATTTGCGAAGGAGGGGTCA
CGCAGCAGGCAAGAAGCCATGTATATGCGTTTGATGTGTGT-TTTGTGCTTGATCCCTCTCAACAAAATTGATGGAAGAT
TTCTGATGTAGCTCCAGTC-------------------------------------------------------------
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>chr3B_73
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GCACCCTTAGTTATCCATATCTTCCAATTGTCCATCGCTCTCGTGATGCAAAATTTGCGCGTGGGCGTCCGTCCCAAAAA
TTAATGGGGCGGAGCGGAGCGCGGCGCG-----TGCAGCCCGGGCC-CCGCGTGCGCGCACTAGGCAAGACCAGT-ACTC
CTAGTAGGCAACTAGAAAGAGCAGCGCGCGG---GCGCGGCGGCAACAGCGGTGGAGCGCGGCGAGCACGACCACCGGCT
TCCCGAGGGA-GGGCCGATCCCTCTCGCGTCCTTGTCGTGGCCAAAAGACTCTCCTCCACTCCACCGTCGCTTTGTCACT
TATCCCCGCGCCGATTGGAGCCC-ACGCGATACCCC-GGACGGGTTCAGAGATCTGACGCATATGGCCGAGATTTTGTGC
CACGCCTC------TCTCTCTGCCCTTTGACATTTACACAAGGTCAGATCCAGAATAACCGACGCCTGACGC----AAGT
GGCTAGTCAAGCGCAGCCAATAATATAGGATCGGCATAAAGAGTCAAGCAAGCGC-AAAGTTAATTCGCGGCTTCCATAT
TCCCCT-----GCGGCCCCTTTAATGACGCCAGAGAGTTCCATCCAAAGATTCCACCCTTTTCTTCTAGTCTAGCTTGCC
CTCTCTCCCTTTTGACATTTGGAGCAAAGTCAAAGAAAACAATAGGGAGGAGAAGCCAAGGCCCTTTTGACAAGTGCATA
GAGCCCCGAACAATGGAGAGCTTCCATATACAATGGGGAGTAGCTGATCATTTCAAATCCGGACGCGATCTTCTCTCTTA
TCCCCTGCTGCTGCTGCTGCGAAGCGCGCGCCGTGCCCACCACTTGCCTTTGACTTTACAGGGATCGAGTCATCCTCCTC
GTGCCACTCCAG--TACGCGTCTCG---AGTATGTACAGGCGTACGCGTATATATTTGCGCTTCCCCGGACCGGCCTGCC
ACTGCCAAAAGTCAACCCCATCCCACGCCGGCCACCACCACGCGTCCTACCTAGCTC---AGCTCACTTCGTCAAACCTC
TCCAAGCTCAAATCCCTGGTCGCCGTTCATGTGCGGCCTGCTTCTGCGCATGGAGCACCTCAACGACTGGGACCTGCAGG
CCGTCGTCAGGAGCTGCGCCACCTTCTCCTCCTCCCACCACCCCCAGGAAGAGGACCGCGCCGGTCCTCCTCCGGGTCCC
GCCGCGGCGCCGCCGGCCGACACGCCGGTAAAGCGGGAGCCGCGCGACGTGGTCCGGCC------------------CGC
ATCGGCGGCCAAGGACGCGTCGTCGCTGTACGGCCTGGAGTACCTGGACTTGGATCACAAGCCCTTCCTGCTGTCGGCGC
CGTCGTCGCAGTCGTGGGCGGCGGTGGATGACCGCCACGAGATGATGATCTCTTTCCCCGCGGCGGCGTCCACGTCCGGC
GTGCGGCCGCGGGTGCCGCCTGGCCGGAAGCCCGGCATACGAAGCAGCACCCCGCGCCCGAAAAGAAGGTACGTAGTATA
---TACCA--AGTTGATTTGTGCACCCGGCCCGATCGCTTATGCAGCGCGATTTGGATCGGACAAGCTTGCAGCCTGCTG
ATTGTGATTTTGTTTGGTGGTGGTGGTGGTGGTGGTGATGGTGAGCAGCAAGAAGAGCCAGCTGAAGAAGGTGGTGTGCG
AGGTGCCGGTGGCCGACGGCGGCGTCTCCTCCGACCTTTGGGCGTGGCGCAAGTACGGTCAAAAGCCCATCAAAGGCTCG
CCTTATCCCCGGTAATTA---ACTATAACCACCTCCACCGGCCCGTTTCCACGCGTTACTGTCGTCTCGTCGATGCACTA
GCTA--CTCCGTGCATAGCCAGATAGCCTTGAGTCCAGTCACTACCGCTTAGTCCAGTCACTACGGCTTAGTACCTTCTA
TTAATAGATTCGCAATAACTGATTTCTCATGCGATGAACATTTACACGGATTTCATCAAACATTTGGTCATTTGG----A
TATACTCCTAATTACGAACAGTATAGTA---GTAGTACATATGA-------CCTGATGCTTAGAACTTGCTAGTACTAGA
TTTTAGCCGCGCACCTTGCCAATTTGGCATCAAGTTTTGGCCAATCACACACCACCTCTACTTTTGCAGTAC-AACACGC
ATGCTCCGGAAGGTACTCAAGTACTCCTCCGTACCAGTACCTATCTTAATTACTAGTAGTCGCTAA--------TCCTGG
TCTGCATACTCCTAAACTTTGTTAGCTTTGTGGTCACAGGGGATACTACAAGTGTAGCAGCATGAAGGGCTGCATGGCCC
GGAAACTGGTGGAGCGCAGCCCGGCCAAGCCCGGTGTGCTCGTCATCACCTACATGGCCGACCACTGCCACCCGGTGCCG
ACGCAGATCAACGCACTCGCCGGCACCACCCGCCACAAGACCACCCCTGCGGACGGCCACGCGA---CGACG--------
----CCCAAAAGCCACGGCGACGCCCACGAGGCGGTGAGGTGCGAGGACGAAAGCAACGAGATGTCGTCGATGGCGGTGG
ACGGTACCACTGAGGAGGCGGCGGGGGATGACGGCGGCGAGTTCTGGCCAACGGAGCTGGACCTGGACGAGTTGTTGGCG
CCTGTGGATGGCGATCTGGATCATGTCTTCGACGAGGATGGCGCCCTGGGACGACGGCTCTCGCTATAGCTGGAGAGGAA
ATTTGTAGCTATAACCTATAGCCACCACCGATTGACAACTTTTTTGCCCCTTTGTTCACCTATTTGCGAAGGAGGGGTCA
CGCAGCAGGCAAGAAGCCAT----ATGCGTTTGATGTGTGTGTTTGTGCTTGACCCCTCTCAACAAAATTGATG-AAGAT
TTCTTATGTAGCTCCAGTTAACGGCTGCCTACAAAATACTCCCTCTGTCTCATATATATGAACGTTTTTGACGTTAATGT
AGTGTCAAAAACATTCTTATATTATGGGACAGAGGAAGTAGTATATACATGTAATTGTTGTTCATCAAAGCCTTGACCAC
ACCGAGCCAACAAGAGCTTGGCACCTGG-CGTTTGATGTGCGTGATCCCTCTCGGCGGTTGCCTACT-------------
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>chr4D_3170
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------------------------------------------------------------------------GTCCATGC
GAGCGGATCTGGTGCGGCGCCCGGGAGATGGCGAGGTGGAGGAAGAGGGCGCCGAGAGGGGTCACGGTAAAGGAGGAGGA
GGGCGCGGGGATGAGGGCCGGTGCGGATCTGGCCGGCGTAGGGCTGGGCAGCGGTCCGGCGGTGGCAGTGGCGCGGATCT
GGCGCGCTGCCGCCACGAGGGCCCGAGTTCAGCCCCGTGCTGCTCCTGGCCTGGCGCGGAGGTGGGCACCGCGGAGGGCG
GCGCCGGCACTGCACCGGGCGGCGAGTGGAGGGCGTCGAGGGCACTGATGGGCCGCGCTGGATCTGGGAGGGCTGCGCTT
GCTGGAGCAGGGAGGCTCCAGCCGTGGTAGATGCGGGATGCGGGGCCCGATCTGGCCTCTGCATGCTCGCCGTGGGGAGG
TGGACCATGCCTTCACGGCTTCAACAACAAGGTGCTGCGGCGGCGGCGGTGTGAGACGACATGGACGAGCTCCGTAGGGC
TTGAGCGGAGGTGTGCGACGATACGGACGAAAGTCCTGCACAACAAGAGCCAGTGCCGATGGCGCCTGAGGGTGTCATTT
TCCTCCTTGGAGGCGCCACCGAGGTGTGTCGGCATCTTCCTCGGGCTTGGTTGGTAGTGTCTCCGGGCGAAAGCCTAGGT
CCGG--TTGGATCGGCGTGATGACGGCGT
>chr4D_3170
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------------------------------------------------------------------------GTCCATGC
GAGCGGATCTGGTGCGGCGCCCGGGAGATGGCGAGGTGGAGGAAGAGGGCGCCGAGAGGGATCGCGGTAAAGGAGGAGGA
GGGCACGGGGATGAGGGCCGGTGCGGATCTGGCCGGCGTAGGGCTGGGCAGCGGTCCGGCGGTGGCAGTGGCGGGGATCT
GGCGCGCTGCCGCCACGAGGGCCCGAGTTCCGCCCCGTGCTGCTCCTGGCCTGGCGCGGAGGTGGGCACAGCGGAGGGCA
GCGTCGGCACTGCACCGGGCGGCGAGTGGAGGGCGTCGAGGGCACTGATGGGCCGCGCTGGATCTGGGAGGGCTGCGCTT
GCTGGAGCAGGGAGGCTCCAGCCGTGGTAGATGCGGGATGCGGGGCCCGATCTGGCCTCTACATGCTCGCCGTGGGGAGG
TGGACCATGCCTTCACGGCTTCAACAACAAGGTGCTGCAGCGGCGGCGGTGTGAGACGACATGGACGAGCTCCGTAGGGC
TTGAGCGGAGGTGTGCGACGATACGGACGAAAGTCCTGCACAACAAGAGCCGGTGCCGATGGCGCCTGAGGGTGTCATTT
TCCTCCTTGGAGGCGCCACCAAGGTGTGTCGGCATCTTCCTCGGGCTTGGTTGGTAGTGTCTCCGGGCGAAAGCCTAGGT
CCGG--TTGGATCGGCGTGATGACGGCGT
>chr4D_3170
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------------------------------------------------------------------------GTCCATGC
GAGTGGATCTGGTGCGGCGCCCGGGAGATGGGGAGGTGGAGGAAGAGGGCGCCGAGAGGGGTCGCGGTAAAGGAGGAGGA
GGGCGCGGGGATGAGGGTCGGTGCGGATCTGGCCGGCGTAGGGCTGGGCAGCGGTCCGGCGGTGGCAGTGGCGCGGATCT
GGCGCGCTGCCGCCACGAGGGCCCGAGTTCCGCCCCGTGCTGCTCCTGGCCTGGCGCGGAGGTGGGCACCGTGGAGGGCG
GCGTCGGCACTGCACCGGGCGGCGAGTGGAGGGCGTCGAGGGCACTGATGGGCCGCGCTGGATCTGGGAGGGCTGCGCTT
GCTGGAGCAGGGAGGCTCCAGCCGTGGTAGATGCGGGATGCGGGGCCCGATCTGGCCTCTGCATGCTCGCCGTGGGGAGG
TGGACCATGCCTTCACGGCTTCAACAACAAGGTGCTGCTGCGACGGCGGTGTGAGAAGACATGGACGAGCTCCGTAGGGC
TTGAGCGGAGGTGTGCGACGATACGGACGAAAGTCCCGCACAACAAGAGCCAGTGCCGGTGGCGCCTGAGGGTGTCATTT
TCCTCCTTGGAGGCGCCACCGAGGTGTGTCGGCATCTTCCTCGGGCTTGGTTGGTAGTGTCTCCGGGCGAAAGCCTAGGT
CCGG--TTGGATCGGCGTGATGACGACGT
>chr7D_3170
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------------------------------------------------------------------------GTCCATGC
GAGCGGATCTGGCGCGGCGCCTGGGAGATGGCGAGGTGGAGGAAGAGGGCGCCGAGAGGGGTCACGGTAAAGGAGGAGGA
GGGCGCGGGGATGAGGGCCGGTGCGGATCTGGCCGGCGTAGGGCTGGGCAGCGGTCCGGCGGTGGCAGTGGCGCGGATCT
GGCGCGCTGCCGCCACGAGGGCCCGAGTTCCGCCCCGTGCTGCTCCTGGCCTGGCGCGGAGGTGGCA-CCACGGAGGGCG
GCGTCGGCACTGCACCGGGCGGCGAGTGGAGGGCGTCGAGGGCACTGATGGGCCGCGCTGGATCTGGGAGGGCTGCGCTT
GCTGGAGGAGGGACGCTCCAGCCGTGGTAGATGCGGGATGCGGGGCCCGATCTGGCCTCTGCATGCTCGCTGTGGGGAGG
TGGACCATGCCTTCACGGCTTCAACAACAAGGTGCTGCGGCGGCGGCGGTGTGAGACGACATGGACGAGCTCCGTAGGGC
TTGAGCAGAGGTGTGCGACGATACGGACGAAAGTCCTGCACAATAAGAGCCGGTGCCGATGGCGTCTGAGGGTGTCATTT
TCCTCCTTGGAGGCGCCACCGAGGTGTGTCGGCATCTTCCTCGGGCTTGGTTGGTAGTGTCTCCGGGCGAAAGCCTAGGT
CCGG--TTGGATCGGCGTGATGACGGCGT
>chr4B_3170
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------------------------------------------------------------------------GTCCATGC
GAGCGGATCTGGTGCGGCGCCCGGGAGATGGCGAGGTGGAGGAAGAGGGCGCCGAGAGGGGTTGCGGTAAAGGAGGAGGA
GGGCGC-GGGATGAGGGCCGGTGCGGATCTGGCCGGCGTAGGGCTGGGCAGCGGTCCGACGGTGGCAGTGGCGTGGATCT
GGCGCGCTGCCTCCTCGAGGGCCCGAGTTCCGCCCCGTGCTGCTCCTGGCCTGGCGCGGAGGTGGGCACCGCGGAGGGCG
GCGTCGGCACTGCACCGGGTGGCGAGTGGAGGGCGTCGACGACACTGATGGGCCGCGCTGGATCTGGGAGGGCTGCGCTT
GCTGGAGCAGGGAGGCTCCAGCCGTGGTAGATGCGGGATGCGGGGCCCGATCTGGCCTCTGCATGCTCGCCGCGGGGAGG
TGGACCATGCCTTCACGGCTTCAACAACAAGGTGCTGCGGCGGCGGCGGTGTGAGACGACATGGACGAGTTCCGTAGGGC
TTGAGCGGAGGTGTGCGACGATACGGACGAAAGTCCCGCACAACAAGAGCCGGTGCCGATGGCGCCTGAGGGTGTCATTT
TCCTCCTTGGAGGCGCCACCGAGGTGTGTCGGCATCTTCCTCGAGCTTGGTTGGTAGTGTCTCCGGGCGAAAGCCTAGGT
CCGG--TTGGATCGGCGTGATGACGGCGT
>chr5B_3170
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------------------------------------------------------------------------GTCCATGC
GAGCGGATCTGGTGCGGCGCTCGGCAGATGGCGAGGTGGAGGAAGAGGGTGCCGAGAGGGGTTGCGGTAAAGGAGGAGGA
GGGCGCTGGGATGAGGGCCGGTGCGGATCTGGCCGGCGTCGGGCTGGGCAGCGGTCCGACGGTGGCAGTGGCGCGGATCT
GGCGCGCTGCCTCCTCGAGGGCCCGAGTTCCGCCCCATGCTGCTCCTGGCCTGGCGTGGAGGTGGGCACAGTGGAAGGCG
GCGTCGGCACTGCACCGGGCGGTGAGTGGAGGGCGTCGAGGACAGTGATGGGCCGCGCTGGATCTGGGAGGGCTGCGCTT
GCTGGAGCAGGGAGCCTCCAGCCGTGGTAGATGCGGGATGCGGGGCCCGATCTGGCCTCTGCATGCTCGCCGTGGGGAGG
TGGACCATGCCTTCACGGCTTCAACAACAAGGTGCTGCGGCGGCGGCGGTGAGAGATGACATGGATGAGCTCCGTAGGGC
TTGAGCGGAGGTGTGCGACGATACGGACGAAAGTCCTGCACAACAAGAGCCGGTGCCGATGGCGCCTGAGGGTGTCATTT
TCCTCCTTGGAGGCGACACCGAGGTGTGTCGGCATCTTCCTCGAGCTTGGTTGGTAGTGTCTCCGGGCGAAAGCCTAGGT
CCGG--TTGGACCGGCGTGATGACGGCGT
>chr1B_3170
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------------------------------------------------------------------------GTCCATGC
GAGCGGAGCTGGTGCGACGCCCGGGAAATGGCAAGGTGGAGGAGGAGGGCGCCGAGAGGTGTCGCGATAAAGGAGTAGGA
GGGAGCGGGGTGGAGGGCCGGTGCGGATCTGGCCGGCGTCGGGCTGGGCAGCGGTCCGACGGTGGCAGTGGCGCGGATCT
GGCGCGCTGCCGCCACGAGGGCTCGAGTTCCGCCCCGTGCTGCTCCTGGCCTGGCGCGGAGGTGGGCGCCGCGGAGGGCG
GCGTCTGCACTGCACTGGGTGGCGAGTGGAGGGCGTCGAGGGCACTGATGGGCCGCGCTGGATCTGGGAGGGCTGCGCTT
GCTGGACCAGGAAGGCTCCAGCCGTGGTAGATGCGGGATGCAGGGCCCGATCTAGCCTCTGCATGCTCGCCGTGGGGAGG
TGGACCATGCCTTCACGGCTTCAACAATAAGGTGCTGCGGCGGTGGCGCTGTGAGACGACATGGACGAGCTCCGAAGGGC
TTGAGCAGAGGTGTGCGATGATACGGACGAAAGTCCTGCACAACAAGAGCCGGTGCCGATGGTGCCTGAGGGTGTCATTT
TCCTCCTTGGAGGCGCCACCGAGGTGTGTCGGCATCTTCCTCGGGCTTGGTTGGTAGTGTCTCCGGGCGAAAGCCTAGGT
CCGGAGTTGGATCGGAGTGATGGCGGCGT
>chr3A_3171
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-------------------------------------------------------------------------TCCATGT
GAGCGGATCTGGTGCGGCGCCCGGGAGATGGCGAGGTGGAGGAGGAGGGCGCCGAGGGGGGTCGCGGTAAAGGAGGAGGA
GGGCGCGGGGAGGAGGGCCGGTGCGGATCTGGCCGGCGTAGGGCTGGGCAGCGGTCCGGCGGTGGCAGTGGCGCGGATCT
GGCGCGCTGCCACCACGAGGGCCCGAGTTCCGCCCCGTGCTGCTCCTGGCCTGGCGCGGAGGTGGGCGCCGCGGAGGGCG
GCATCGGCACTGCACCGGGCGGCGAGTGGAGGGCGTCGAGGGCACTGATGGGCCGCGCTAGATCTGGGAGGGCTGCACTT
GCTGGAGCAGGGAGGCTCCAAACGTGGTAGATGCGGGATGCGGGGCCCGATCTGGCCTCTGCATACTCGCCGTGGGGAGG
TGGACCATGCCTTCACGGCTTCAACAACAAGGTGTTGCGGCGGCGGCGGCGTGAGACGACATGGACGAGCTCTGTAGGGC
TTGAGCGGAGGTGTGCGACGATACGGACGAAAGTCCTGCACAACAAGAGCCGGTGCCGATGGCGCCTGAGGGTGTCATTT
TCCTCCTTGGAGGCGCCACCGAGGTGTGTCGGCATCTTCCCCAGGCTTGGTTGGTAGTGTCTCCGGGCGAAAGCCTAGGT
CCGG--TTGGATTGGCGTGATGACGGCGT
>chr4A_3171
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-------------------------------------------------------------------------TCCATGT
GAGCGGATCTGGTGCGGCGCCCGGGAGATGGCGAGGTGGAGGAGGAGGGCGCCGAGGGGGGTCGCGGTAAAGGAGGAGGA
GGGCGCGGGGAGGAGGGCCGGTGCGGATCTGGCCGGCGTAGGGCTGGGCAGCGGTCCGGCGGTGGCAGTGGCGCGGATCT
GGCGCACTGCCGCCACGAGGGCCCGAGTTCCGCCCCGTGCTGCTCCTGGCCTGGCGCGAAGGTGGGCGTCGCGGAGGGCG
GCGTCAGCACTGCACCGGGCGGCGAGTGGAGGGCGTTGAGGGCACTAATGGGCCGCGCTAGATCTGGGAGGGCTGCACTT
GCTGGAGCAGGGAGGCTCCAACCGTGGTAGATGCGGGATGCGGGGCCCGATATGGCCTCTGCATGCTCGCCGTGGGGAGG
TGGACCATGCCTTCACGGCTTCAACAACAAGGTGCTGCGGCGGCGGCGGCGTGAGACTACATGGACGAGCTCTGTAGGGC
TTGAGCGGAGGTGTCCGACGATACTGACGAAAGTCCTGCACAACAAGAGCCGGTGCCGATGGCGCCTGAGGGTGTCATTT
TCCTCCTTGGAGGCGCCACCGAGGTGTGTCGGCATCTTCCTCGGGCTTGGTTGGTAGTGTCTCCGGGCGAAAGCCTAGGT
CCGG--TTGGATCGGCGTGATGACGGCGT
>SNPs
---------------------------------S-------S------------------------S-------------
--------------------------------------------------------------------------------
---------------------SS-----SSSSS------------------------------------------S----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----S-----SSS-------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------S--SSSSSS-
-----------------------------------------------------------------------------S--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------S------------SSS----------------------------------------------------
----------------------------------------------------------------------------S---
--------------------------------------------------------------------------------
----------------------------------------------------------------------------S---
------------------------S---------------------------S------SSSSSSSSSSSSSSSSSS---
-------------------------------------------------------------------S------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------SSSSS
SSS-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------S-------------------S----------------------------------------S---S-----
------S-------------------------------S--------S--------------------------------
--------------------------------------------SSSSSSS-----------------------------
--------------------------------------------------------------------------------
-------------S----------------------------S-----------------S-SSSSSSSSSSSS------
----------------------------------S---------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------S---------S----------------
---------------------------------------------------------------------------S----
----S---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------S--S----SSSS-SS-SSS--SS-SSSSSS------------------
--------------------------------------------------------S-S---------------------
--------------S-------------S----S------------S-----------------S--SSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------
-----------S---------------------------------------------S-------S--------------
-----------------------------------------------------------------S--------------
------------------------------------------------------------------------SS------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------S----------------------------------------------------------------
------------------------S-------------------------------------------------------
---S----------------------------------------------------------------------------
-----------------------------
>forward_34
--------------AGCCATCGATAACGTGGACC----------------------------------------------
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>reverse_1950
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-----------------------------CGAGTCCAGTCACTACCGC--------------------------------
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-----------------------------
>forward_42
----------------------ATAACGTGGACCGACCGAAC--------------------------------------
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>reverse_2131
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--------------------------------------------------ACCTGGTGCTTAGAACTTGCT---------
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>forward_491
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--------------------------------------------------------------------------------
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-----------------------------------------------------------------------ATTTTGTGC
CACGGCTCTCT---------------------------------------------------------------------
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>reverse_2313
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------------------------------------------------------------------------AGTCCTGG
TCTGCATACTCCT-------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------
>forward_1930
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------------------------------------GTCGATGCAC
TAGCTACCCG----------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------
>reverse_3204
--------------------------------------------------------------------------------
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---GGTCGAGCGCTAATGCAATG---------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------------------------
