>input_sequence_42497
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-----------------------------------------------------ATGTCAGACATTCTTGCAGTAGCTCTA
GGAGGAGCTGCAGGAGGTTTGGCATTAGTTGGTGCCATCACACTCATTGTAGTGCTATGCCTACGGCACGGCAGACGGAA
TTCAGATTCTTCAGAGAGTAATTCGTCCGGTCAAGCTCTTCCAGGTACCGCTCAAATTAGTATTCGAGGGGCTTTTAATT
TCAGTGTTTTTCAGCTAGTGTCAAATTAGCATTTTAGCTTAACAGACTGCTTTTATTATGTACTCTAGACATGCAAGGAG
CAAGATGTATGACACTGGAGGAACTAAGGTCTGCTACAAATAACTTCAGCAGCTCGAATCTCGTCGGACATGGAATGTTC
GGAGAGGTATACAACGGTTTGCTCCAGGATG-------------------------------------------------
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--------------------------------------GCACAATTATAGCGGTTAAAAGGCGGCATTCTCCTCCTAGCC
AGGAATTTCTCCATGAGGTGCCAAAATTTTCTC----------------CTAGAGTAGT---------------------
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-------------------------------------------------GGCATGTTGTAAGAAATCAAAACCTTGCTTC
CTGAGATCAAAACCAATACATGAACTCATGGTTGTTGTTGGCCTTTTCTCCCCAGGTTAATTACCTGTCGTCTATCCGTC
GTCATCCCAACCTTGTAAATCTCTTGGGGTATTGCCAGGACAATGGCATGCAGATGCTTGTTTATCAGTATGTCCCCAAT
GGCAGCATTTCTGCGCATTTGCATGGTGATTTTTCCATTGTGTATTTCCTATTTATAGTTCTGATGTACAAGAAGAGCAT
CAGAAGTGCTAATTTTATCTATCTTTCTGCCATCCCTCTACAGGCAACGGCAATTCTCCAACTGTGAGGCTAGAATTCAA
GCAGAGACTTGCTATTGCTCATGGAACCGCTAAGGGTAAGTATACATCGGCACCAACTCCTAATTTCCTTTATTGGCAGA
AGCTTATTCTC---------TTATGGATTGCCTCATTTTCAGTCACAATAGTTATGCAATGAATCTTAA---TATAATGA
CCTTTCCTGTTACTGTTACTCAGGCCTGAGTCACCTGCATTCCATGACCCCTCCTGCTGTTCACATGAACTTCAAAACTG
CTAATGTCCTGGTGGATGCGGATTTCTTACCAAAAGTTGCTGATACTGGCATCCGAGGCCTACTTGATCGACTAGGCAAT
GCTGGCCCGCCTTCGATGATATTCAATGATCCATTCGTTGATCCTCGGTAATGACTGAGCTTCTTCTTTGGGGGGGTTAA
AACTTAAAAGTTGTTAATTACATCCCTTGACTTCCATTAGTGAATAGTACAAACTATATGCTTTCAGTGTGCTGCCTGTG
ATAGTAGCAAATTTATCGGCATCCCGTGTCTGTTTTTAATGGAGATTTGTTGCATGACCAGGGGGAAGGAGTCCATGATT
TTTTCCATACAAAGTGATGTATACAGTTTTGGTGTGTTCCTTGTGGAGTTGATCAGTGGAAGGACGGCTGCGTCTGATCA
AGGCATTATTGAATGGGTAAATTCTACCGATTCCTGATGATTGTTCAATTCCTCTTTTCCATATTATTCTCATAATATCT
ATCATCATACCAGAGCCAAGGTTTCAGTTTGCTTACTATCCATCTCTGATATGCAGGTTCGGAACTTTCAAGAATCAAGT
GAAATCTCTGCAATAGCAGATAGGAGAATGACCAGTGGCTTTACCCCACAAGGCATGAAGGAATTGTTGCGCTTGGCATC
GCGGTGCGTGAACCCGACAAGCGAGGATCGTCCGTCGATGAGCCTGGTGGAAGCCGAGATACACCGGATACGCGAGCAGG
AGATCAGGAGGACGACAGCCATGCCAGTGGGCGACACAACTGTGACCCTAGGCAGCCAACTCTTCACATCATCAAGATGA
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--------------------------------------------
>chr3D_1_TraesCS3D01G436200
AGCGCCCATAAGGCCAATGCCATACTGTTAGATAACAAAAGTTGAAGAATTCTGCATTCTTCTTTTATTAAATTTCGATT
TAACATGTAGTACAACTGGGGATTGTTAAAGGCATTGGACATTGGTGGTTTGCAAGCACTACTACAGAGGAAGCTTTCGC
AAAA-CCTTTTGTATGGGCGACGAAGCGTTCCTGTTATATATAGTGCTGTAGTGGACTTTTTTTTTGTGTC--------T
GTATATGATCATGCATTGTCAACCAAATAGAAGAATATGCAGCACAGATTATTGTATTTGAGAGGCTCTTTGCATACCAT
GGGAATTTTATTAGTAATAGTCATGGCGCGAAATATTTGAATATTGCAATGGTCTGGGAAATAAAAGGCAAAAGGCGCAA
GACGCAACACCACGCAATTGTATGAGAATTCACGAGGCTCATTGTATTGCATGAGAATTTAGTACGTGTTATAGCCCGGA
AGTCCTCTGATGGCGCGGAATTTCTTAATATTGCAACGGTCGTGCACGTTATCTAGGAAATAAAA-GGAATGCGATAAAT
GGCAAAAATGAGCGAACTGCCAGGCCACTCAATATTCAGTTCTGAATGTCAACATGTTTGCATTGTTCCATCTGATAACT
TAGTTGTCCCCCGCAAAACAAAAGATAACTTAGTTGTCCTTTCTCTGTTTTATGCACTAATAATTGCTTGGCCCGTGCTG
CTTACGTCATTGGCGGAATGCGCTTTCCTAGTTTACAACTGCTCACATTCATCTCTCATTTAACCGGTCCATCCATATAT
GGCACATATGCTCCATTTTGTATTCTGCAACTGTTTAGTTTGCTTTGTATTGCTGCGCTGTCGATTCAGCAATCTGTCGG
TTACTGTTATTGCTACTTCAATGTTAAGTCCAGAAAAATTAAAATGTACT-AATATTTAGGTTATATCTGTCTGCATCGC
CGCTGCTACAAAA--GTTACTATCCTATTCTGAAGGAGGAGATTGCATACTAGATGTCAGACATTCTTGCAGTAGCTCTA
GGAGGAGCTGCAGGAGGTTTGGCATTAGTTGGTGCCATCACACTCATTGTAGTGCTATGCCTACGGCACGGCAGACGGAA
TTCAGATTCTTCAGAGAGTAATTCGTCCGGTCAAGCTCTTCCAGGTACCGCTCAAATTAGTATTCGAGGGGCTTTTAATT
TCAGTGTTTTTCAGCTAGTGTCAAATTAGCATTTTAGCTTAACAGACTGCTTTTATTATGTACTCTAGACATGCAAGGAG
CAAGATGTATGACACTGGAGGAACTAAGGTCTGCTACAAATAACTTCAGCAGCTCGAATCTCGTCGGACATGGAATGTTC
GGAGAGGTATACAACGGTTTGCTCCAGGATG-------------------------------------------------
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--------------------------------------GCACAATTATAGCGGTTAAAAGGCGGCATTCTCCTCCTAGCC
AGGAATTTCTCCATGAGGTGCCAAAATTTTCTC----------------CTAGAGTAGT---------------------
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-------------------------------------------------GGCATGTTGTAAGAAATCAAAACCTTGCTTC
CTGAGATCAAAACCAATACATGAACTCATGGTTGTTGTTGGCCTTTTCTCCCCAGGTTAATTACCTGTCGTCTATCCGTC
GTCATCCCAACCTTGTAAATCTCTTGGGGTATTGCCAGGACAATGGCATGCAGATGCTTGTTTATCAGTATGTCCCCAAT
GGCAGCATTTCTGCGCATTTGCATGGTGATTTTTCCATTGTGTATTTCCTATTTATAGTTCTGATGTACAAGAAGAGCAT
CAGAAGTGCTAATTTTATCTATCTTTCTGCCATCCCTCTACAGGCAACGGCAATTCTCCAACTGTGAGGCTAGAATTCAA
GCAGAGACTTGCTATTGCTCATGGAACCGCTAAGGGTAAGTATACATCGGCACCAACTCCTAATTTCCTTTATTGGCAGA
AGCTTATTCTC---------TTATGGATTGCCTCATTTTCAGTCACAATAGTTATGCAATGAATCTTAA---TATAATGA
CCTTTCCTGTTACTGTTACTCAGGCCTGAGTCACCTGCATTCCATGACCCCTCCTGCTGTTCACATGAACTTCAAAACTG
CTAATGTCCTGGTGGATGCGGATTTCTTACCAAAAGTTGCTGATACTGGCATCCGAGGCCTACTTGATCGACTAGGCAAT
GCTGGCCCGCCTTCGATGATATTCAATGATCCATTCGTTGATCCTCGGTAATGACTGAGCTTCTTCTTTGGGGGGGTTAA
AACTTAAAAGTTGTTAATTACATCCCTTGACTTCCATTAGTGAATAGTACAAACTATATGCTTTCAGTGTGCTGCCTGTG
ATAGTAGCAAATTTATCGGCATCCCGTGTCTGTTTTTAATGGAGATTTGTTGCATGACCAGGGGGAAGGAGTCCATGATT
TTTTCCATACAAAGTGATGTATACAGTTTTGGTGTGTTCCTTGTGGAGTTGATCAGTGGAAGGACGGCTGCGTCTGATCA
AGGCATTATTGAATGGGTAAATTCTACCGATTCCTGATGATTGTTCAATTCCTCTTTTCCATATTATTCTCATAATATCT
ATCATCATACCAGAGCCAAGGTTTCAGTTTGCTTACTATCCATCTCTGATATGCAGGTTCGGAACTTTCAAGAATCAAGT
GAAATCTCTGCAATAGCAGATAGGAGAATGACCAGTGGCTTTACCCCACAAGGCATGAAGGAATTGTTGCGCTTGGCATC
GCGGTGCGTGAACCCGACAAGCGAGGATCGTCCGTCGATGAGCCTGGTGGAAGCCGAGATACACCGGATACGCGAGCAGG
AGATCAGGAGGACGACAGCCATGCCAGTGGGCGACACAACTGTGACCCTAGGCAGCCAACTCTTCACATCATCAAGATGA
AGAAGAATGGAAAGTTATAGCATTTCAAAGGCTAAGCTAG-TTTCCTCTTTCAGGGTTATAGATTAGCTATTCTAGCTCC
AATTTTGCCCCATTAGTTTCTTGTCATAGCGAGCCAGCTCATCATCAGCTGTGCAACTCAAGTGTACAAAAAAGGAGGAG
CTGTTAGGCTTCCCTTTTCACCCTTGGTTTATTTTCTTCGT--TATTCGACATAGGGTTTCAACTTGTACAAAAAAGAAT
GACAATTCTTTTTTGCTAGACTTTTGTAACATCGAGAGGGTAGTGCCAAACAGGCAACTTTATATATCTCTACAATTTTA
GACATTTGCCATCCTTAGTAGCATAGTGTTTTCTGACAATTTGCTCTGCATTTTTTACAAGGATGCTTTATTTGAAGATC
CTTTTCTTGGAGCTATGCCATCCCTGATTTCCTTAGAGAGTGCTTATATCACTATCATACATGTCATCTGAACTGGCCTC
CATTTCTGAATCTAGCCAACGCGACCACCATTTCTGAATGGCACCTATGGTTGGATGAGGTCATCTCTGTTGACGGTGAA
GTCCCAGAGCTCGCCGTACTTCTCGTTGAAGTCCCAGATGTCCATGGAGTTGTAGTCCGCGATGAGCTTGTCGCGCTTGG
ACCTCTCCATCATGTAGATCTCCGGCTCAAAGTTGTGCGGTTTGTCCGGCTTGTCCATCTCGATGACGCAGAACACGACG
ATGAAGATAGCTGCCCCAATGTAAAGGTACTCCCCCTAGTGACACAAATAGACCATGAGTCTTCCTCCGTTCAGTAAGCC
CAAGACAGATAGATGATGCATGTAAATAGGAGGAATAGGGGTTAATGGAACTACTCGATCCGTACCGGCACATCGAAAGC
CATTCCGAGGATGACTGCGGGAGGGAATGCCCAGGAGATGAGTGCTGCAAGAGATTGCCATTGATGCTAATGAGAAAGAT
TCAAGGACATGTA-TACTGTTTCCAGATAGCAAAAGGCACCATG
>chr3A_1
AGCGCCCATAAGGCCAATGCCATATTGTTAGATCACACAAGTTGAAGAATTCTGCATTCTTCTCTTATTAGATTTCGATT
TAACATGTAGTACAACTGGGGATTGTTAAAGGCA-------TTGGTGGTTTGGAAGCACTACTACAGAGGAAGCTTTCGC
ATACCCC-TTTATATGGGCGACGAAGCGTTCCTGTTATATATAGTGCTGTAGTGGACAGTTTTTTTGTGTC--------T
GTATATGATCATGCATTGTCAACCAAATAGAAGAATATGCAGCGCAGTTTATTGTATTTGGGAGGCTCTTTGCATACCAT
GGGAATTTTATTAGTGCTAGTCATGGCGCGAAATATTTGAATATTGCAACTGTCTGGGAAATAAAAGGCAAAAGGCGCAA
AACGCAACGCCACGTAATTTTATGAGAATTCACGAGGCTCTTTAAATTACACGAGAATTTAGTACGTGTTACAGCGTGAA
ATTTCTCTGATGGTGCGAAATTTCTGAATATTGCAACGGCCGTGCACGTTATCTAGGAAATAAAA-GGAATGCGATAAAC
GGCAAAAAGGCACGAACTGCCAGGCCACTTAATGTTCAGTTCTGAATGTCAACATGATTGCATTGTTCCATCTGATATT-
-----------------------------TTAGTTTTCCTTTCGCTGATTTATGCGCTAATAATTGCTTGGTCCGTGCTG
CTTACGTCATTGTCGGAATGCGCTTACCTATTTTATAACTGCTCATATTCATCTCTTGTTTAACCGGTCCATCCATATAT
GGCACATATGTTCCATTTTGTACTCTGCAATTATTTAGTTCACTTTGTATTGTTGCGCTGTCGATTCAGCAATCTTTCGT
TTATTCTTATTGCTTGTTCAAAGTTAAGTTCAGATAAATTAAA-TGTACT-ACTATTTAGGTTACA----TCTGCATCGC
CACTGCTACAGAAATATTACTAGCCTGTTCTGAAGGAGGAAATTTCATACTAGATGTCAGACATTCTTGCAGTAGCTCTA
GGAGGGGCTGCAGGAGGTTTGGCATTAGTTGGTGCCATCACACTCATTGTAGTGCTATGCCTACGGCACCGCAGAAGGAA
TTCAGATTCTTCAGAGAGTAATTCGTCGGGTCAAGCTCTTCCAGGTACCGCTCAAATTAGTTTTTGAGGGGCTTTTAATT
TCACTGTTTTTCAGCTGGTGTCAGATTAGCA-TTTAGCTTAACAGACTGCTTTTATTATGTACTCTAGACATGCAAGGAG
CAAGATGTATGACACTGGAGGAACTAAGGTCTGCTACAAATAACTTCAGCAGCTCGAATCTCGTCGGACATGGAATGTTC
GGAGAGGTATACAACGGTTTGCTCCAGGATG-------------------------------------------------
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--------------------------------------GCACAATTATAGCGGTTAAAAGGCGGCATTCTCCTCCGAGCC
AGGAATTTCTTCATGAGGTGCCAATTTTTTCTCCGTATCCGCCGATTCTCTAGAGTAGT---------------------
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-------------------------------------------------GGCATGTTTTAAGAAATCAAAACCTTGCTTC
CTGAGATCAAAACCAATACATGAACTCATGATTGTTGGTGCCTTTTGCTCCCCAGGTTAATTACTTATCGTCTATCCGTC
GTCATCCCAACCTCGTAAATCTCTTGGGGCATTGCCAGGACAATGGCATGCAGATGCTTGTTTATCAGTATGTCCCCAAT
GGCAGCATTTCTACGCATTTGCATGGTGATTTTTCCATTGTGTGTTTCCTATT-ATTGTTCTGATGTGCAAGAAGAGCAT
CACAAGTGATAGCTTTTCTTTCTTTCTTGCCATCCTTCTACAGGAAATGGCCATTCTCCAACTGCAAGGCTAGAATTCAA
GCAGAGACTTGCTATTGCTCATGGAACCGCTAAGGGTAAGTATACATCGGCACCAACTCCGCATTTCCATTATTGGCAGA
GGCATGTTTTCATGACTACATTATGAATTGCCTCATTTTCAGTCACAATAGTTATGCAATGAATCT--------TATTGA
CCTTTCCTATTACTGTTACTCAGGCCTGAGTCACCTGCATTCCATGACCCCTCCTGCTGTCCACATGAACTTCAAAACTG
CTAATGTCCTGGTGGATGCGGATTTCTTACCAAAAGTTGCTGATACTGGCATCCGAGGCCTACTTGATCGACTAGGCAAT
GCTGGCCCGCCTTCGATGATATTCAATGATCCGTTCGTTGATCCTCGGTAATGACTGAGCTTCTTCTTTGGGGTGGTTAA
AACTTAAAAGTTCATAATTACATCCCTTGACTTCCATTAGTGAATAGTACAAACTGTATGCTTTCAGTGTGCTGCCTGTG
ATAGTAGCAAATTTATCGGCATCCCGTGTCTGTTTTTAATGGAGATTTGTTGCATGACCAGGGGGAAGGAGTCCATGATT
TTTTCCATACAAAGTGATGTATACAGTTTTGGTGTGTTCCTTGTGGAGTTGATCAGTGGAAGGACGGCTGCGTCTGATCA
AGGCATTATTGAATGGGTAAATTCTACTGATTCCTGATGATTGTTCAATTCCTCTTTGCCATATTATTCTCATAATATCT
ATCACCATA--------------------------CTATCCATCTCTGATATGCAGGTTCGGAACTTTCAAGAATCAAGT
GAAATCTCTGCAATAGCAGATAGGAGAATGACCAGCGGCTTTACCCCACGAGGCATGAAGGAATTGTTGCGCTTGGCATC
GCGGTGCGTGAACCCGGCAAGCGAGGATCGTCCGTCGATGAGCCTGGTGGAAGCCGAGATACACCGGATACGCGAGCAGG
AGATCAGGAGGACGACAGCCATGCCAGTGGGCGACACAACTGTGACCCTAGGCAGCCAGCTCTTCACATCACCAAGATGA
AGAAGAATGGAAAGTTATAGCATTTCAAAGGCTAAGCTAGTTTTCCTCTTTCAGGGTTATAGATTAGCTATTCTAGCTCC
AATTTTGCCCCATTAGTTTCTTCTCATAGTGAGCCAGCTCATCATCAGCTGTGCAACTCAAGTGTACAAAAAAGGAGGAG
CTGTTAGGCTTCCCTTTTCACCCCTGGTGTATTTTCTTCGTTGTATTCGACATAGGGTTTCAACTTGCACAAAAAAGAAT
GACAATTCTTTTTTGCTAGACTTTTGTAACATCGAGAGGGTAGCGCCAAACTGGCAACTTTATATATCTCTTCAATTTTA
GACATTTGCCAT---TTGTAGTATGGTCTTTTCTGACAATTTGCTCTGCATTTTTTACAAGGATGCTTTATTTGAAGATC
CTTTTCTTGGAGCTATGCCATCCCTGATTTCCTTAGAGAGTGCTTATATCACTATCATACATGTCATCTGAACTGACCTC
CATTTCTGAATCTAGCCAATGCGACCACCATTTCTGAATGGCACCTATGGTTGGATAAGGTCATCTCTGTTGACAGTGAA
GTCCCAGAGCTCGCCGTACTTCTCGTTGAAGTCCCAGATGTCCATGGAGTTGTAGTCTGCGATGAGCTTGTCGCGCTTGG
ACCTCTCCATCATGTAGATCTCCGGCTCAAAGTTGTGCGGTTTGTCCGGCTTGTCCATCTCGATGACGCAGAACACGACG
ATGAAGATAGCTGCCCCAATGTAAAGGTACTCTCCCTGGTGGCACAAATAGACCACGAGTCTTCCTTCGTTCAGTGAGCC
CAAGACAGAT----GATGCATGTAAATAGGAGGATTAGAGGTTAATGGAACTACTCAATCCATACCGGCACATCGAAAGC
CATTCCGAGGATGACTGCAGGAGGGAATGCCCAGGAGATGAGTGCTGCAAGAGATTGCCGTTGATGCTAATGAGAAAGAT
TCAAGGACATGTAATACTGTTTCCAGATAGCAAAAGGCACCATG
>chr3B_120
--------------------------------------------------------------------------------
---------------------------------------CATTGCTGGTTTGCAAGCACTACTGCAGAGGAAGCTTTCGC
ATACCCCTTTTGTATGAGCGACGAAGCGTTCCTGTTATATATAGTGCTGTAGTGGACAGTTTTTGTGTGTGTGTGTGTGT
GTATATGATCATGCATTGTCAACCAAATAGAAGAATATGCAGCGCAGATTATTGTATTTGGGAGGCTCTTTGCATACCAT
GGGAATTTTATTAGTGCTAGTCATGGTGCGAAATATTTGAATATTGCAACGGCCGAGGAAATAAAAGGCAAAAGGCGCAA
GCCGCAACGCCACGTAATTGTATGAGAATTCACGAGGCTCTTTAAATTACATGAGAATTTAGTACGTGTCATAGCGCGAA
TTTTTTTGA-----------------ATTATCGCAATGGTTGTGCGCGTTATCTGTTCAATAAAAAGGAAACCGATAAAA
GGC-AAAAGGCGCGAACTGCCAGGCCACTTAATACTCAGTTCTGAATGTCAACATGTTTGCATTGTTCCATCTGATATT-
-----------------------------TT-GTTTTCCTTTCGCTGATTTATGTGCTAATAATTGCTTGGTCTGTGCTG
CTTACGTCGTTGTCGGAATGCACTTTTCTATTTCACAACTGCTCATATTCATCTCTCATCTAACCGGTCCATCCATACAT
GACACATATGTTCCATTTTGTATTCTGCAATTGTTTTGTTCACTTTGTATTGTTGCGCTGCCGATTCAGCAATATGTCGG
TTATTGTTATTGCTTGTTCAAAGTTAAGTTCAGATAAATTAAAAGCACTACACTATTTAGGTTGCA----TCTGCATCGC
CGCTGCTACAAAA--ATTACTAGCCTGTTCTGAAGGAGGAGATTTCATACTAGATGTCAGACATTCTTGCAGTAGCTCTA
GGAGGAGCTGCAGGAGGTTTGGCATTAGTTGGTGCCATCACACTCATTGTAGTGCTATGCCTACGGCACCGCAGAAGGAA
TTCAGATTCTTCAGAGAGTAATTCGTCGGGTCAAGCTCTTTCAGGTACCGCTCAAGTTAGTTTTTGAGGGGCTTTTAATT
TCGGTGTTTTTCAGCTGGTGTCAAATTAGCATTTTACCTTAAAAGACTACTTTTGTTGTGTACTCTAGACGTGCAAGGAG
CAAGATGTATGACACTGGAGGAACTAAGGTCTGCTACAAATAACTTCAGCAGCTCGAATCTCGTCGGACATGGAATGTTT
GGAGAAGTATACAACGGTTTGCTACAGGATG-------------------------------------------------
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--------------------------------------GCACAATTATAGCGGTTAAAAGGCGGCATTCTCCTCCTAGCC
AGGAGTTTCTTCATGAGGTGCCAAAATTTTCTCC----------------TAGAGTAGT---------------------
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-------------------------------------------------GGCATGTTGTAAGAAATCAAAACCTTGCTTC
CTGAGATCAAAACCAATACATGAACTCATGGTTGTTGGTGGCCTTTTCTCCCTAGGTTAATTACCTGTCGTCGATCCGTC
GTCACCCCAACCTTGTAAATCTCTTGGGGTATTGCCAGGACAATGGCATGCAGATGCTTGTTTATCAGTATGTCCCCAAT
GGCAGCATTTCTACGCATTTGCATGGTGATTTTTTCATTGTGTGTTTCCTATTTTTAGGTCTGATGTACAAGAAGAGCAT
CAGAAGTGCTAATTTTTCCTTTCTTTCTGCCATCCCTCTACAGGCAACGGCAATTCTCCAACGGTGAGGCTAGAATTCAA
GCAGAGACTTGCTATTGCTCATGGAACCGCTAAGGGTAAGTTTACATCGGCACCAACTCCACATTTCCATTGTTGGCAGA
GGCATGTTTTCATAACTACATTATGAATTGCCTCATTTTCAGTCACAA-AGTTATACAAGGAATCTTAATAGTATAATGA
CCTTTCCTGTTACTGTTACTCAGGGTTGAGTCACCTGCATTCCATGACCCCTCCTGCTGTTCACATGAACTTCAAAACTG
CTAATGTCCTGGTGGATGCGGATTTCGTACCAAAAGTTGCTGATACTGGCATCCGAGGCCTACTTGATCGACTAGGCAAT
GCTGGGCCGCCTTCAATGATATTCAATGATCCATTCGTCGACCCCCGGTAATGACTGATCT-------------------
------------------------------------------------------------------------------TG
ATAGTAGCAAATTTACCGGCATCCATTGCTTGATTTTAATGGGGATTTGTTGCATGACCAGGGGGAAGGAGTCCATGATT
TTTTCCATACAGAGTGATGTCTACAGTTTTGGTGTGTTCCTTGTGGAGTTGATCAGTGGAAGGACGGCTGCGTCTGATCA
AGGCATTATTGAATGGGTAAATTCTACTGATTCCTGATGATTGTTCAATTTTTCTTTTCCATATCATTCTCATAATATCT
ATCATCATACCAGAGCCAAGGTTTCAGTTTGCTTACTATCCATCTCTGATATGCAGGTTCAAAACTTTCAAGAATCAAGT
GATATCTCTACAATAGCAGATAGGAGAATGACCAGTGGCTTTACCCCACAAGGCATGAAGGAATTGTTGCGCTTGGCATT
GCGGTGCGTGAACCCGACAAGCGAGAATCGTCCGTCGATGAGCCTGGTGGAAGCTGAGATACACCGGATACGCAAGCAGG
AGATCAGGAGGACGACAGGCATGCCAGTGGGCGACACAACTGTGACCCTAGGCAGCCAGCTCTTCACATCACCAAGATGA
AGAAGCATGGAAAGTTATAGCATTTCAAAGGCTAAGCTAGGTTTCCTCTTTCAGGGTTATAGATTAGCTATTCTAGCTCC
AATTTTGCCCCATTAGTTTCTTCTCATATTGAGCCAGCTCATCACCAGCTGTGCAACTCAAGTGTACAAAAAAGGAGGAG
CTGTTAGGCTTCCCTTTTCACCCCTGGTTTATTTTCTTCGT--TATTCGACATAGGGTTTCAACTTGTACAAAAAAGAAT
GACAATTCTTTTTTGCTAGACTTTTGTAACACCGAGAGAGTAGCGCCAAACTGGTAACTTTATATATCTCTACAATTTTA
GACATTTGCCAT---TAGTAGCATAGTGTTTCCTGACAATCTGCTCTGCATTTTTTACAAGGTTGCTTTGTTTGAAGATC
CTTTTCTTGGAGCTATGCCATACCTGATTTCCTTAGAGAGTGCTTATATCACTATCATACATGTCATCTGAACTGACCTC
CATTTCTGAATCTAGCCAATGCGACCATCGTTTCTGAATGGCACCTATGGTTGGATGAGGTCATCTCTGTTGACGGTGAA
GTCCCAGAGCTCGCCGTACTTCTCGTTGAAGTCCCAGATGTCCATGGAGTTGTAGTCTGCGATGAGCTTGTCGCGCTTGG
ACCTCTCCATCATGTAGATCTCCGGCTCAAAGTTGTGCGGTTTGTCCGGCTTGTCCATCTCGATGACGCAGAACATGACG
ATGAAGATAGCTGCCCCAATGTAAAGGTACTCCCCCTGGTGGCACGGATAGACCATGAGTCTTCCTCCGTTCAGTGAGCC
CAAGACAGAT----GATGCATGTAAATAGGAGTATTAGAGGTTAATGGAACTACTCAATCCGTACCGGCACATCGAAAGC
CATTCCGAGGATGACTGCGGGAGGGAATGCCCAGGAGATGAGTGCTGCAAGAGATTTCCACTGATGCTAATGAGAAAGGT
TCAAGGACATGTA-TACTGTTTCCAGATAGCAAGAGGCACCATG
>chr2D_960
AAAC----------------------------------------------------------------------------
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----------------TTGCTATCCTATTCTGAAGGAGGTGATTTCATACTAGATGTCAGACATTCTTGCAGTAGCTCTA
GGAGGAGCTGCAGGAGGTTTGGCATTAGTTGGTGCCATCACACTCATTGTAGTGATATGCCTACCGCACCGCGGAAGGAA
TTCAGATTCTTCAGAGAGTAATTCGTCCGGTCAAGCTCTTCCAGGTACCGCTCAAATTAGTTTTTGAGGGGCTTTTAATT
TCGGTGTTTTTCAGCTACTGTCAGATTGGCATTTTAGCTTAACAGACTGCTTTTGTTGTGTACTCTAGACATGCAAGGAG
CAACATGTATGACACTGGAGGAACTAAGGTCTGCTACAAATAACTTCAGCAGCTCGAATCTCGTCGGACATGGAATGTTC
GGAGAGGTATACAACGGTTTGCTCCATGGATAGGATAGGTACTGCAGACAGACAGTGGGCCACTGTATATTGCCCTAACA
TAGCATGGCTGAAATAGAATCAGTTTTTTCTCTTCTATTTTTCAGATGAGAGACAGCTTTACAGAAATGAAAATCACACT
CCAAAAAGGGTTTTCGTCGCAAAATTAGGCAGAAAAGGTAGGCATCCATGAGTTGCTCAAACAAATCCAAAAATAAACCC
TTTTTTCCAGCACAATTATAGCGGTTTGCTCCATGTCCGCACAATTATAGCGGTTAAAAGGCGGCATTCTCCTCCTAGCC
AGGAATTTCTTCATGAGGTGCCAAAATTTTCTCC----------------TAGAGTAGT---------------------
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-------------------------------------------------GGCATGTTGTAAGAAATCAAAACCTTGCTTC
CTGAGATCAAAACCAATACATGAACTCATGGTTATTGGTGGCCTTTTCTCCCCAGGCTAATTACATGTCGTCTATCCGTC
GTCGTCCCAA----------------------------------------------------------------------
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>chr6D_1424
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---AATTTCTTCATGAGATACCAAAATTTTCTCC----------------TAGAGTAGTGGCATGTTGTAAGAAATCAAA
ACCTTGCTTCCTGAGATCAAAACCAATACATGAACTCATGGTTATTGGTGGCCTTTTCTCCCCAGGTTAATTACATGTCG
TCTATCCGTCGTCATCTCAATAATTTGAACAAATTCTGATGGAGTATTCACTCGAATCATTGGCAGCAATTATCTCTTGA
ATTACTCTTGTCTTGAATTATTGGCAACAAATATTTCTTTGAATTACTCTTGTTTATGATCATCAAATTGTTTACTCATA
TGAGCAAGTCTTAGTTTATGATCATCTGATTGCTTATGATCATCAAATTGATGCAGAGCGGGTACTGGGCGAGGAGATGA
ACCTAGGCCAGCAGCTCCTGTGCAGCGGCGAGTACTTCAGCGGCAGCAGCTCCTGTGTGCGGTGAGTGCTTCAGCGGCAG
CAGCTCCCCTGGGCGCGTGCGGGCACCAGCTCGCCTTCACCAGCAGCCGGCAGCAGAGCAGCAGCTCGACTCCACCAGCG
GACAGCAGCACAGCACCAGCTCGCCTCCACGAGCAGGCGGCAGCAGAGCATCACCTGGGCGCGCGCGGTCCAGGAGGAGC
CCCAGGACGGCGTGGGTGGAGGTGGAGGCGGGGGCCGAGGCGGAGGTGGAGGGCGGGGACGGAGGCGGGGGCGGAGGCGG
AGGTGGAGGGCGGGGCCGGAGGCGGAGGTGGAGGGCAGGGGCGGTGGCGGAGGTGGAAGACGATCCAGCGACCTGATTCA
AAATTTAAACTAAGGGTATAAATGTCCATTTGCCCATTTTCACCTGGTCGGAACATTTGCCCCAGCGACCTACATTTCGG
TACAGAGGGAGTANNNNNNNNNNAACAAGCAACTCCTCAAGCATCTCAACTAGCATCTCGACAAGCAACTCAACAAGCAA
CTCCTCAAGCATCTCGACAAGCATCTCGACAAGCAACTCCTCAAGCATCTCAACAAGCAACTCCTCAAGCATCTCAACAA
GCATCTCGACAAGCATCTCAACAAGCAACTCCTCAAGCATCTCGACAAGCATCTCAACAAGCAACTCTCTCCATTATCCC
AAGATTGTGCAGGGCATTTGCATATACCTCTGGAGGGCATGTAAGTCTTGGAGGTAGCATCCCAAGGTTCTCTAGCCTTT
CCTTGTTCGCATGGGGTATTTTATACCCATTGCCCCCTGCATGGTTCAAGATTTCAACCATGCAAGCTTGTGGAGATAGG
AAAACTCTGTTCAGCTTGTAAACCTCATAGTTTTCAAATTCATCTAGCACACCCTTGATAAGATCTTGAAGCGTTCTAGG
GCTTAGACAATCTGTTAGAGATTGCAACGAGTTGAAGAACCCAAGGTCAAGGCCATTCAGATCAGGGCTATTAGCAGAGT
AAACCTCATAATTTCTTCATGAGATACCAAAATTTTCTCCTAGAGTAGTGGCATGTTGTAAGAAATCAAAACCTTGCTTC
CTGAGATCAAAACCAATACATGAACTCATGGTTATTGGTGGCCTTTTCTCCCCAGGTTAATTACATGTCATCTATCCGTC
GTCATCCCAA----------------------------------------------------------------------
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>SNPs
------------------------S--------S---S-------------------------S------S---------
----------------------------------SSSSS-----------------------------------------
-S-S-----------------------------------------------------SS---------------------
-------------------------------------------S----------------S-------------------
---------------SS--------------------------------S------------------------------
--------S-----S-------------------------S--SS---S--------------------------S--S-
-S-S---------S---S-------S-----------------------------------------------------S
--------S-S------------------S-----------------------------------------------SSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSS------S-------S---S-------S---------------S--------
------------S-----------------S--------------S----------------------------------
----------S-------------------S---------SS----------S---------------------------
---S----------SS-----S-------S----S-----------------S-----------S-SSSS----------
---------------S----------------------------S-----------------------------------
---------------------------------------------------------------------S-----S----
-------------------------------------------------------------S--S---------------
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----------S---------------------------------------------------------------------
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-------------------------------------S------------------------------------------
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------------S------------------------------S------------------------------------
----------------SS--S-----------------------------------------------------------
------------------------------------------------------------SS------S-----------
S--S-S--S----------------S------------------------------------------------------
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-------------------------------------------------------------------------S------
------------SS-----------------------------------------S------------------------
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---------------------------S----------------------------------------------------
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----------------------------------------------------------S------------S--------
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----------------------S------S--------------------------------------------------
-----------------------S--------------------------------------------------------
-------------------------------------------S-------S----------------------------
------------SSS-----------------------------------------------------------------
---------------------------------------------------------------------------S----
-------------------S------------------------------------------------------------
---------------------------------------------------------S----------------------
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-------------------------------------S---S---------------------------------S----
----------SSSS--------------------S---S-----------------S-----------------------
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>forward_733
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-------------------------------------------------------------------------CGTGCTG
CTTACGTCATTGG-------------------------------------------------------------------
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>reverse_3373
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------------GCGCATTTGCATGGTGATTT------------------------------------------------
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>forward_976
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----------------------------------------------------------------------------CATC
GCCGCTGCTACAAAAG----------------------------------------------------------------
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>reverse_4663
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----------------------GTCATAGCGAGCCAGCTCAT--------------------------------------
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