>input_sequence_42488
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---------------------------CGTGTCGCACGGGGATGGCGGGGCAGGCGCCGGCCGTGGTGGCGTTCGCGCTG
GCGGCCGCCATCCTCTCCACGCCGCCGCCGCAGTCG---GACAACTTCTCCAACATCCCGCCCACGCTCTCCGGTACGTG
CGCACCCACTA-----------------CCACCACCGATTGCACGCGCACGT-------CACATCACAGGTAGTATGTAT
CATTGGTTGATGATGGAGGTGATCGAGG----TTGTAGGGGACGACAAGGCGCAGGTGAGGATCAAGCACCCCAAGTCGG
CCAAGGCGCTGCAGTGCACCTCCAAGTGCGTCGCCACCTGCATCCGCGGCGGCGAGGGGCCCATCAACGTCCGGAGGCCC
CTCGTCGTCTTCAAGGAGGGGCAGTTCCGCAGCCGCCTCTACTGGTAATTACTCTACTCATTAGCCGCCCTGCCTGTTAG
T---------------------ACTGATGAGTTAACTATACATGCTTAATTCTGTGCAGCCTGACAGAGTGCTCGGACAT
CTGCAACCTCATCAAGGACGGCGAGGACGGGCCATGAGAATG--AGATGAACGAAGCTCTTGCCCGGGAGGAGCGGCAGG
CACGTTCAGGGCCTTACTGGGACTGCATTTCTCACAAGGAACCGCACGAAATCGCGGCGTAAATTCCGAAAGGAACCACG
GAGATCATGCGGTGAAGAGATCATAGTAGGGAGGGAGGGAGAATCGTCATGGAATTTCTGTACTTTCTACCACTTGCTTA
TAGCTGTACATGACACAGAAGGCAGAGCAAGCAATACATTTTTGGCATCGTCACGACCATGAGCAACAGAGATAAACAC-
------ATGAATGAATGCCTTCAACTGATAACTTGAATTTTATTCTGCATCATATGCAGCATCTTTCAATGGATTTTAGA
CGAGAAGTTGAGGATTCCTGTCTGTTTCTAGCCAAGCCGTTGCACACTGATCCATTGTTGAAACAAACCTGCTGAACTCA
CTGCACTTGCAATCCTTTC-GACTTGCGCACTTGCTGAAGCTGCTATGTTCCACTGTCAACAATCTAGGTTTCCTTTCTT
GCTTACAAATTGTAGTACTACT----------------------------------------------------------
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-------------ACATGATAAGTACCGCAGATCAGAGCTGCAGGCACACAATACATTTTACCACATAGTAC--------
-------------------------------------------A-----TGTTGTCAGTAGA-------CTCACAACACC
TTCATAACGATCGCCTTCATTTTATTTGCTAGCTAGTTAGACATCGACCACTATCATATACAA-CATTTTGCGCTGAATT
CGACAAGAGGTCGAGGCAAACTATCCAATTAATCCAGCTGACGTGCTCAAGATTTATCTGGCATCC-GAGGAGGATATCG
GTCTTTTAATCCAGCCGGCCGCCG--------------------------CGGATGATCACTGGATATGCACT--TGTGA
TCCGAGACCTGGTCGAGCACTTGC--------CAAAACAGCTCAGTTCGACAGCCGACAATATAGGGCTTCCTTGCTCCT
CTGACCTGATGATTCGACTGTTACAACACACAGATATTCATTACATGGAAATACACAT--------GCTGTTCCAGAAGT
ACTCAGAATGCAAAT-TTTTATTTGTTGGACACTATTTTAGCTTACCAGTCAGTTCAATGATCCCATATCAGGCAGGAAA
AGGTATCGGAACCGAGAGTCGAACGGGATGATGCCGAAAGTCCGGGTGCCCAGGAGGCTTTGCCGCCTCTGAGACACGCA
GTGCTCGACGAATGTAGCCTGCTGCTGAGGCAGGAAATGCGATATCCAGATAGGGAAGCTGTTGTCGTCGACGAACCCTC
GCGCAAAACAGTGCAGCATTTTGGGGATCAGAAGCTTTCCCTTTCGGCTCACTCCCACCGATGCTCTGATGAAATCACGC
TGCGCATCCTGAAGCTCTTCCCTTACGTTGCTG-----------------------------------------------
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>chr7D_1_TraesCS7D01G408400
TCGCCGGCCCCGACCGAAGACGGACAAAGACTTTCGTCTGTGGCGTCGCACACCATCCTCCTCGCCCACCGGAATGGGGC
AGCCATCCATGTTGTTCACACCGCCGCCGCCGCAGCAAATCAATGTCATGGCCGATGCGTCATGTAACACCAACGAC---
------CCGCACGACGAGAGCCCACCTCTCTACCAACTCCGATCTGGCCGAGCACCCGCAGCCCCCACCGTCGAGCACCT
CCTGTGTGGTCGAGGGACCGCCGCAC-GCTGCTGTCACACTCCTGACAGCAGCCATACAG-----------------ACC
GGCCCCCCAGCCCAGATCGGGCCCTGGCTGGGCCCAGATCTAGCCCGCAGCACCCTCTCCATGGCCGCCGGCGGCAGCTC
CACTGCGATTTTCGCCGCCTCCAGGAAGCACCACCGACGTCCGCGGCG-CTGCTAGCTTCGCCTCCATGGCCCGAGGAAG
CCGCACGGACGCAGACCTCGCGCCACAGCCTCTGCGTCGTCGCCTCCAGGCCCGCGCCGCCGCTTCCATGGCCGCTCACC
CCTCCGAGCTCCGGGTCCTCCGCCAGCCTTCACGCAGCTCCGCCACGACCCTCCTCTCGCCGCCCGCCGCCTCACAGCAC
CGCCGCCGTGCGCCGCCCGATGAAGCCCTCCTT----------------------CGCGCGAAGAGAACGCCACCGGGCG
CACTCTCCTCCCCGCCGCCTTCGGTGGCCAGGGGGCCGCCACCACCGCCAGGATCGGCGGCGGCAGCGGCCGGGTGGATC
TGGGGTAGGTGGCTCGCTAGTTAGGGTAAAAAAAGTTATTTATCACCCCATGATGCTTCTTGTATCCCACATACTGTGGT
ATTGGATGATGAATAAAGTTATTTATCACCCAAAAAAAGAACTAAAAAAAAAGGCAACGGCGAGTGCGAGGCGACGCGCC
TTGACCACACAGAGAGCAGCGAGGCTGAGTGGCTGAGCAGAGCA-----------------GAGACAAGGCCGGGCACGG
CGCTCGCGGACGAGCGAGCCGCGCCGTCGTGTCGCACGGGGATGGCGGGGCAGGCGCCGGCCGTGGTGGCGTTCGCGCTG
GCGGCCGCCATCCTCTCCACGCCGCCGCCGCAGTCG---GACAACTTCTCCAACATCCCGCCCACGCTCTCCGGTACGTG
CGCACCCACTA-----------------CCACCACCGATTGCACGCGCACGT-------CACATCACAGGTAGTATGTAT
CATTGGTTGATGATGGAGGTGATCGAGG----TTGTAGGGGACGACAAGGCGCAGGTGAGGATCAAGCACCCCAAGTCGG
CCAAGGCGCTGCAGTGCACCTCCAAGTGCGTCGCCACCTGCATCCGCGGCGGCGAGGGGCCCATCAACGTCCGGAGGCCC
CTCGTCGTCTTCAAGGAGGGGCAGTTCCGCAGCCGCCTCTACTGGTAATTACTCTACTCATTAGCCGCCCTGCCTGTTAG
T---------------------ACTGATGAGTTAACTATACATGCTTAATTCTGTGCAGCCTGACAGAGTGCTCGGACAT
CTGCAACCTCATCAAGGACGGCGAGGACGGGCCATGAGAATG--AGATGAACGAAGCTCTTGCCCGGGAGGAGCGGCAGG
CACGTTCAGGGCCTTACTGGGACTGCATTTCTCACAAGGAACCGCACGAAATCGCGGCGTAAATTCCGAAAGGAACCACG
GAGATCATGCGGTGAAGAGATCATAGTAGGGAGGGAGGGAGAATCGTCATGGAATTTCTGTACTTTCTACCACTTGCTTA
TAGCTGTACATGACACAGAAGGCAGAGCAAGCAATACATTTTTGGCATCGTCACGACCATGAGCAACAGAGATAAACAC-
------ATGAATGAATGCCTTCAACTGATAACTTGAATTTTATTCTGCATCATATGCAGCATCTTTCAATGGATTTTAGA
CGAGAAGTTGAGGATTCCTGTCTGTTTCTAGCCAAGCCGTTGCACACTGATCCATTGTTGAAACAAACCTGCTGAACTCA
CTGCACTTGCAATCCTTTC-GACTTGCGCACTTGCTGAAGCTGCTATGTTCCACTGTCAACAATCTAGGTTTCCTTTCTT
GCTTACAAATTGTAGTACTACT----------------------------------------------------------
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-------------ACATGATAAGTACCGCAGATCAGAGCTGCAGGCACACAATACATTTTACCACATAGTAC--------
-------------------------------------------A-----TGTTGTCAGTAGA-------CTCACAACACC
TTCATAACGATCGCCTTCATTTTATTTGCTAGCTAGTTAGACATCGACCACTATCATATACAA-CATTTTGCGCTGAATT
CGACAAGAGGTCGAGGCAAACTATCCAATTAATCCAGCTGACGTGCTCAAGATTTATCTGGCATCC-GAGGAGGATATCG
GTCTTTTAATCCAGCCGGCCGCCG--------------------------CGGATGATCACTGGATATGCACT--TGTGA
TCCGAGACCTGGTCGAGCACTTGC--------CAAAACAGCTCAGTTCGACAGCCGACAATATAGGGCTTCCTTGCTCCT
CTGACCTGATGATTCGACTGTTACAACACACAGATATTCATTACATGGAAATACACAT--------GCTGTTCCAGAAGT
ACTCAGAATGCAAAT-TTTTATTTGTTGGACACTATTTTAGCTTACCAGTCAGTTCAATGATCCCATATCAGGCAGGAAA
AGGTATCGGAACCGAGAGTCGAACGGGATGATGCCGAAAGTCCGGGTGCCCAGGAGGCTTTGCCGCCTCTGAGACACGCA
GTGCTCGACGAATGTAGCCTGCTGCTGAGGCAGGAAATGCGATATCCAGATAGGGAAGCTGTTGTCGTCGACGAACCCTC
GCGCAAAACAGTGCAGCATTTTGGGGATCAGAAGCTTTCCCTTTCGGCTCACTCCCACCGATGCTCTGATGAAATCACGC
TGCGCATCCTGAAGCTCTTCCCTTACGTTGCTGGCTGTGTAT--------------------------------------
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----------------------ATCTTCACCTGCAGTGATAAACAATCGCCAGTTAATTACAAAAGCGT-----------
----------TGCAAAATGGTAGTGCTGCATTTCATATCAGAAGCCATAAAATGAGTGATCTAAACTTACTGCAGGCGAA
GAATACATTCCACAGCTGAGGGCAAATGTCAGAAGTGGTTCAGGTGTTGAAATGCAGAACTTTCTCTGGTCCTCAGGTGA
CTTTATCTTCTGAAGGGCAAGAAGCAGAGCCTTAAGCAAAACAAAGAAAAAGCTGTCATCGGTTTGCATTCATGAACAAA
CAAGCAGATTTGTCATCAAGATGCACTGCAGCTCACATACCATCTGTGGTCTGTGATTCGGCGGCTTCATCTTCAAAATA
ACATATTCGATGAATGCTGCACTGAATGAATTCCCTCCAATTGTGTACGCAGCCTGGA---AAAAAAATTGCAACAATGT
TAGACCAGAAGCATCACAAAAGTATA--------AACATCAGTCAACGAGCACGAATC--------------------AA
GTTTTGAAGCAAACCTTTTGCATTAGTGAAAACAGTTTCATGTCACTTCGTGGAACACCGTAAGCAAGATAAGCCTGTAA
AGGACACAAAGCACCATCAAGTCTCGCGTCAACCATCAATGGAGCCTATCGCTTTAACCAGAAAGGCTACACAATCACAC
AACTAAAGCGAGTTTGTCAATTCACCGTACATGCATCAACAAGGCATTGTACAAATTGATCCAAAACGCCAATCTCGCGT
CGTCGCTGAGATGAACGGGGTTTACTTCTGCCAGCTGCTCAATCAGCAACCTGCATTCTAAATAAGCATTCATCAGTACT
GACTACTGACTAGTGAATTATAAATCAAGTCCAAAGCATCATGAAATGCAAAGAACTCTGTCCATGTTTTATGGTATTCA
CACTTTGGATCTAAAATTGTAATTTCTTGGGCTAGAATCTATATCCATCTAACTATTTTGGTGATGTTGTCTTGTTTGGT
ACACTGTCACTGATTATTAACTACT
>chr7B_1
TCGCCGGCCCCGACCGAAGACGGACAAAGACTTTCATCTGTGACGTCGCACACCATCCTCCTTGCCCACCGGAATGGGGC
AGCCGCCCACGTTGTTCACACCGCCGCCACAGCAGCAAATCAATGTCGTGGCCGATGCGTCATGGAACACCGACGAC---
------CCGCACGACGAGAGCCCACCTCTCTACCAACTCTGATCTGGCCGAGCACCCGCAACCCCCACCGTCGAGCACCT
CCTGTGTGGTCGAGGAACCGCCGCAC-GCTGCTATCACGCTCTTGATAGCTGTCGTACAG-----------------ATC
GGCCCCCCAGCCCAGATCGGGCCTTGGCTGGGCCCAGATCTAGCCCGCAGCACCCTCTCCAAGGCCGCCGACGGCAGCTC
TACTGCAATTTTTGCCGCCTCCAAGAAGCACCACCGACGGCCACGACG-CTGCCAGCTCCGCCTCCATGGCCCGAGGAAG
CCGCACGGACGCAGACCTCGCGCCGCAGCCTCTGCGTCGCCGCCTCCAGGCCCGGGTCGCCGCTTCCATGGC--------
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>chr7B_1
TCACCGGTCCTGACCGAAGCCGGACCAAGACTTTCGTTTGTAATGTCGGACACCATCCTCCTTGCCCACTAGAATGGGGC
TATCGTCCATGTTGTGCACACCGTCGCCACCACAGAAATTCACTCTCGTGGCTGATGCGTCATGGAACACCGACCACTT-
--------GCACGACGAGAGCCCACCTCTCTTCCAACTTCGAACTGGCCAAGCACCCACAGCCCCCACCTTCGAGCACCT
CCTGCGTGGTTGAGGAACCGCCGCATCGCTGCTATCACG--CCTGACAGCTGTCGTATAT-----------------GCC
GGTCC-CCAGCCCAGATCGGGCCCTGGCCGGGCCCAGATCTAGCCCACAACATC--CCCCATGGTTGTCGACACCAGCAC
CACCGCGGATATCGTCGCCTTCAAGAAGCACCACCGATGGTCCCGGCA-CTGCCAGCTCCGCCTCCATGGCCCTAGGAAA
CCGCACGGACGCAAACCTCACGCCACATCCCA----TCGT--------------------CGCTTCCATGGCCGCTCACC
CCTCCGAGCTCCGGATCCTCCGCTAGCCATCACGCTGCTCCGCCACGACCCTCCTCTCACCGCCCGCCACCTCTCAGCAT
CGTCACCGTGCGCTGCCCGATGAA-CCCTCCTC----------------------CGCGCGAAGTCAGCGCCACCGGGTG
CGCTCTCCTTCCCGCCGCCTATGGCAGCCAGGGGGCTGCCACCACTGCCAGGACCGGCGGCGGCAGTGGCCAGGTAGATC
TGGGGCAGG-AGTGCGCTAGCTAGGGT-----------------------------------------------------
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>chr2D_1
TCGCCGGCCCCGACCGAAGACGGACAAAGACTTTCGTCTGTGACGTCGCACGCCATCCTCCTCGCCCACCGGAATGGGGC
AGCCGTCCACGTTGTTCACACCGCCGCCGCCGCAGCAAATCAATGTCATGGCCGATGCGTCATGGAACACCGACGAC---
------CCGCACGACGAGAGCCCACCTCTCTACCAACTCCGATCTGTCCGAGCGCCCGCAGCCCCCACCGTCGAGCACCT
CCTGTGTGGTCGAGGGACCGCCGCAC-GCTGCTGTCACGCTCCTGATAGCAGCCGTACAGACCGGGCCCCTAGCGAAATC
GGGCCCCCAGCCCAGATCGGGCCCTGGCTAGGCCCAGATCTAGCCCGCAGCACCCTCTCCATGGCCGCCGGTGGCAGCTC
CACTGCGATTTTCGCCGCCTCCAGGAAGCACCACCGACGGCCGCGGCG-CTGCTAGCTCCGCCTCCATGGCCCGAGGAAG
CCACATGGACGCAGACCTCGCGCCACAGCCTCTGCGTCGCCGCCTCCAGGCCCGCGCCGCCGCTTCCATGGCCGCTCACC
CCTCCGAGCTCCGGCTCCTCCGCCAGCCTTCACGCAGCTCCGCCACGACCCTCCTCTCGCCGCCCGCCGCCTCACAGCAC
CGCCGCCGTGCGCCACCCGATGAAGCCCTCCTT----------------------CGCGCGAAGACAACGCCACCGGGCG
CGCTCTCCTCCCCGCCGCCTTCGGCGGCCAGGGGGCCGCCACCACCGCCAGGACCGGCGGCGGCAGCAGCCGGGTGAATT
TGGGGTAGGTGGCTCGCTAGTTAGGGT-----------------------------------------------------
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>chr5D_1
TCGCCGACCCCGACCGAAGGCGGACAAAGACTTTCGTCTGTGACGTCGCACGCCATCCTCCTCACCCACCGGAATGGGGC
AGCCGTCCACGTTGTTCACACCGCCGCCGCCGCAGCAAATCAATGTCGTGGCCGATGCGCCATGGAACACCGACGAC---
------CCGCACGACGAGAGCCCACCTCTCTACCAACTCCGATCTGGCCGAGCACCCGCAGCCCCCACCGTCGAGCACCT
CCTGTG--GTCGAGGGACCGCCGCAC-GCTACTGTCACGCTCCTGACAGCAGCCGTACAG-----------------ACC
GGGCCCCCAGCCCAGATCGGGCCCTGGCTGGGCCCAAATCTAGCCCGCAACACCCTCTCCATGGCCGCCGGCGGCAGCTC
CACTACGATTTCGGCCGCCTCCAGGAAGCACCACCGACGGCCGCAGCG-CTGCCAGCTCCGCATCCATGGCCCGAGGAAG
CCGCACGGACACAGACCTCGCGCCACAGCCTCTGCGTCGCCGCCTCCAGGCCCGCGCCGCCACTTCCATGGCCGCTCACC
CCTCCGAGCTCCGGGTCCTCCGCCAACCTTCACGCAGCTCCGCCACGACCCTCCTCTCGCCGCCCACCGCCTTACAGCAC
CGCCGCCGTGCGCCGCCCGATGAAGCCCTCCTT----------------------CGCGCGAAGACAGCCCCGCCGGGCG
CGCTCTCCTCCCCGCCGCCTTCGGCGGCCAGGGGGCCGCCACCACCGCCAGGACCGGCGACGGCAGCGGCCTGGTGGATC
TGGGGTAGGTGGCTCGCTGGTTAGGGT-----------------------------------------------------
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>chr6D_1
TCGCCTGCCCCGACCGAAGACGAG-CAAGACTTTCGTCTGTAATGTCGCACACCATCATCCTCGCCCACCGGAATGGGGC
AACCGTCCACGTTGTTCACACCGCCGCC---GCAGCAATTCAATGTTGTGGCCGATGCGTCATGGAACACCGACGAC---
------CCGCACGACGAGAGCCCACCTATCTTCCAACTCCGAACTGGCCGAGCACCTGCAGCCCCCACCTTCGAGCACCT
CCTGTGAGGATATGGAACCGCCGCACCGCTGCTGTCACG--CCTGACAGCTGCCGTACAG-----------------GCC
GGCCC-CCAGCCCAGATCAGGCCCTGGCTGGGCCCAGATTTAGCCCGTAGCACC--CTCCATGGCCGCCGGCGGTAGCTC
CACCGCGGATATCGCCGCCTCCAGGAAGCACCACCGACGGCCGCAGCGGCTGCCAGCTCCGCCTACACGGCCCTAGGAAG
CCGCACGGACGCAGACGTCACGCCGCATC-------TCGTCGCCTCCAGGCCCGCGCCGCCGCTCCCATGGCCGCTCACC
CCTCCGAGCTCCGGATCCCCTGCCAGCCATCACGCTACTCCGCCACGACCCTCCTCTCGCCGCCCGCCGCCTCCCAGCTC
CGCCGCCGTGCACCGCCCGATGAGCCTTCCTCCGCGCGAAGTCAGGGCCACCAGGCGC----------------------
-ACTCTCCTCCCCACCGCCTTTGGCGGCCAGGCGGCCGCCACCACCGCCAAGTCCGGCGGTGGCAGCGGCCGGGTGGATC
TGGGGTAGG-GGTGCGCTAGCTAGGGT-----------------------------------------------------
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>chr3A_1
TCGCCGG-CCCGACCGAAGACGGACAAACACTTTCGTCGGTGACGTCGCACACCATCCTCCTTGCCCACCGGAATGGGGC
AGCCGTCCACGTTGTTCACACCGCTGCCGCCGCAGGAAATCAATGTCGTGGCCCATGCTTCACGGA---------AC---
------CCGCACGACGAGAGCCCACCTCTCTACCAGCTCCGATCTGGCCGAGCACCCGCAGCCCCCAC-GTCGAGCACCT
CCTATCTGGTCGAGGAACCGCCGCAC-GCTGCTATCACGCTCCTGACAGCTGTCGTACAT-----------------ACC
GGCCCCCAA-CCCAGATCGGGCCCTCGCCGGGCCCAGATCCAGCCCGCAGCACCCTCTCCATGGCCACCGGCGGATGCTC
CACTGTGATTTTCGCCGCCTCCAGGAAGCACCACCGACGGCCACGACG-CTGCTAGCTCCGCCTCCATGGCCCGAGGAAG
CCGCATGGACGTAGACCTCGCGCCGCAGCCTCTGCGTCGCCGCCTCCAGGCCCGCGCCGCCGCTTCCAAGGCCGTGCACC
CCTCCGAGCTGTGGGTCCTCCACCAGCCTTCACGCAGCTCCGCCACAACCCTTCTCTCGCCGCCCGCCGCCTCTCAGCAC
CACCGCCGTGCACCGTCCGATGAAGCCCTCCTT----------------------CGC----------------------
-ACTCTCCTCCCCGCCGCCTTCGGCAGCCAGGGGGCCGCT---------AGGACCGGCGGCGGCAGCGGCCGGGTGGATC
TGGGGTAGGTGGCTCGCTGGTTAGGGT-----------------------------------------------------
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>chr4A_1
TCGCCGGCCCCGGCTGAAGACGGATACAGACTTTTGTTTGTAACGTCGCACACCATCCTCCTCGCCCATCGGAATGGAAC
CACTGTCCACGTTGTTCACACCGCCGCCGCTGCAGCAATTCAATGTCGTGGCCGATGCGTCATGGA---------ACAAC
GACGACCTGCACCACAAGATCCCACCTCTCTTCCAACTCTGATCTGGCCGAGCACCCGCAACCCCCACCTTCGAGCACCT
CCTGCGTGATTGAGGAACCGT--------TGTTGTCACGCTCCTGACAGCTACAGTACAG-----------------GCC
GTCCCCCCAGCCCAGATCGGGCCCTGGCTGGGCCCAGATCTAGCCCGCATTACCCTCACCATGGCCGCTGGCGGTAGCTC
CAC-GCGGTTTTCGCCACCTCCAGGAAGCACCACCGACGGCTGTGGCA-CTGCCAGCTTCGCATTCATGGCCCCAGGAAG
CCGCACGGACGCAGCCCTCGCGCCGCAGCCCA----TCGTCGCCTCCAGGCCAGCGCCGCCGCTTCCATGGTCGCTCACC
CCTCTGAGCTATGGATCCTTCGCCAGCCAGCACGCTGCTCCGCCATGACCCTCCTATCACCGCCCACCGCCTCTCAGCAT
CGCTGACGTGCGATGCCCGATGAAGCCTCCTCCGCGCGAAGTCAGTGCCACAAGGCGT----------------------
-GCTCTCCTCCCCGTTGCCTTTGGCGGCTAGGGGGCCGCCACCATCGCCAGG---GCCGGCGGCTGCGGTCGAGTGGATC
TGGGGTAGG-GT-TCGCTAGCTAGGGT-----------------------------------------------------
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>chr7A_896
GCAAGGCGCGCCCTTA----------------------------------------------------------------
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---ACCACACACAGGGCAGCGAGGCTGAGTGGCTGACCAGAGCGGAGCAGAGACCACGAACGAGACGCGGCCGGCCACGG
CGCTGGTGTCCTCGTCCGCCGTCGCTGTGCCGCG--CGGGGATGGCGGGGCAGGCGCCGGCCGTGGTGGCGTTCGCTCTG
GCGGCCGCCATCCTGTCGACGCCGCCTCCGCAGTCG---GAGAACTTCTCCAACATCCCGCCCACGCTCTCCGGTACGT-
CCCCGTTCATCCGCAGGAGAGAGCAGCGCCACCACGGATGGCATGCGCACAGGCACAGGCACAGCACAGGTATCAGTTAA
C------TGATGATGGAGGTGGGGATGC--------AGGGGACGACAAGGCGCAGGTGAGGATCAAGCACCCCAAGTCGG
CCAAGGCGCTGCAGTGCACCTCCAAGTGCGTGGCCACCTGCATCCGCGGCGGCGAGGGGCCCATCAACGTCCGGAGGCCC
CTCGTCGTCTTCAAGGAGGGGCAGTTCCGCAGCCGCCTCTACTGGTAATTACTCTACTAATTAGCCGCCCTGCCTGCCTG
TTAGTACTGCTGGGGCCAGGCCACTGACGAGTTAACCATACGTGCTTAATTCCGTGCAGCCTGACAGAGTGCTCGGACAT
CTGCAACCTCATCAAGGACGGCGAGGACGGGCCATGAGACGATCAGACGAGCGAAGCTCTTGCCCAGGAGGAACGACAAG
CACATTCAGGGCCATTCCGGGACTGCATTTCTCACAAGGAACCGCGCG-AATCACGACGGAAATTCCGAAAGGAACCACG
GCGGTCATGCGGTGAAGAGATCATGCTAGGGAGGGAGGGAGCATCGCCATGGAATTTCTGTACTTTCTACCGCTTGCTTA
TAGCTGTACATGACACAGCAGGCAGAGCAA----TACATTTTTGGCATTGTCAGGACCATGAGCAACAGAGATACAACAT
GAATGAATGAATGAATGCCTTCAACTCATAACTTGAATTTTATTCTGCAACATATA------------------------
----------------------------CAGCCATGCTGAACT-CACTGATCCAGTGTCGAAACAAACCTGCTGAACTCA
CTGCACTTGCAATCCTTTCTGACCCGCGCACTTGCTGAAACAGCTAGGTTCAACTGTCAACAATCTAGGTTTCCTTTCTT
GCTTATAAATTGTAGTACTACTCCCTCCTTTCCGGTTTATAGGGCTTACTCCCTACATAAAATTGTAGTATCTCAAAATT
TTAGTTTTTCCATTTTATAAGGTTCAATTTGATTGTTCCCCATTACATGTTCAGACTTCAAGGTGCATTAAATCATTGCA
TGCAAGTATTAAGAGAAAACTGACCAATGCATGCACTTTATGCATGCATGCATTGCAATTAATGCATTCGTAAACATATT
TTTTTGAGGAAAACAAGAGCATTAATTGGGTGCTTTTGCAAACTATAAAAAATATTCCACCACTCATCATCTACCTTGGT
TGGTGAGATTTTTGAATTGAGCCTTAGGGCATCTCCAACAGTTGTGAGATGGGTGTTGGTAAATTTGCCACTTAGGACAT
AATGATGATGTGGCATGTATTAAATATGGAGAGAGAGCAAAGTTGTATGTACATTAACCAACAACCTTTGCACAAGCTCC
AAGGTGAAATAAAGAGCAATCATATTTATTGTCTCACAATCTATTGGATAGCTTACATACAACCTATTGAAGTAGTTGTA
TGATAACTTGTTGGTTGATGACATGGACATTTTACCAACAAGACTAACATACAACCTGTTGGAGATGCCCTTATAAACCG
GAAAGGAGGGAGTACATGATAA-TGCCGCAGACCAGAGCTGCAGGCTACATTATACTCCCTCCGTCCCATAATATTGACA
CTAGTGCAGTGTCAAAAACACTATTATATTATGGGGCGGAGGGAGTACATGTTGTCAG-------TAGACTCACAACAAC
TTCATAACGATCGCCTTCATTTTATTTGCTAGCTAGTTAGAAATCAACCACTATCATATACAA-CATTTTGCCCTGAATT
CGACAAGAAGTCGAGGCAAACTAGCCAATTAATCCAGCTGACGTGCTCAAGATTTATCTGACATCTTGAGGAGGATACCA
GTCTTTTAATCCAGCCGGCCGTTGCACATTGGTTCAGTGCTGAAACAAACCGGATGATCACTGGATGTGCACCTGTGTGA
TCCGAGACCTGGTCGACCACTTGC--------CGAAACGGCTCGGTTCGACTGCCGACAATATAGGGCTTCCTTGCACCT
CTGACCTGATGATTCAACTGTTACAATAAACAGATATTCAGTACATGGAAAGACACACATATATTCGCTGTTGCAGAAGT
ACTCAGAATGCAATT-TTTTA-TTGTTGGACACTATTTTAGCTTACCAGTCAGTTCACTGATCCCATATCAGGCAGGAAA
AGGTATCGAAATCGGGAGTCGAACGGGATGATGCCGAAAGTCCGGGTGCCCAGGAGGCTTTGCCGCCTCTGAGACACGCA
GTGCTCGACGAATGTAGCTTGCTGCTGAGGCAGGAAATGCGATATCCAGATAGGGAAGCTGTTGTCGTCGACGAACCCTC
GCGCGAAACAGTGCAGCATTTTGGGGATCAGAAGCTTCCCCTTCCGGCTCACTCCCACCGATGCTCTGATGAAATCACGC
TGCGCATCCTGCAGCTCTTCCCTTACGTTGCTGGCTGTGTAT--------------------------------------
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----------------------ATCTTCACCTGCAATGATAAACAATCGTCAGTTAAGTATAAAAACGT-----------
----------TGCAAAATGATGGTGCTGCATTTCATATCAAAAGCCATAAAATGAGTGATCTAAACTTACTGCAGGCGAA
GAATACATTCCACAGCTGAGGGCAAATGTCAGAAGTGGTTCAGGTGTTGAAATGCAGAACTTTCTCTGGTCCTCAGGTGA
CTTTATCTTCTGAAGGGCAAGAAGCAGAGCCTTAAGCAAAACAAAGAAACTGTT---ATCAGTTTGCATTCATGAACAAA
CAAGCAGGTTTGTCATCAAGATGCACTGCAGCTCACATACCATCTGTGGCCTGTGATTCGGCGGCTTCATCTTCAAAATA
ACATATTCGATGAATGCCGCACTGAATGAATTCCCTCCAATTGTGTAGGCAGCCTGGAATAAAAATAATAGCAACAGTGT
TAGACATGAATCATCACATGAGTACAGAAAAACGAAAATCAGTTAACGAGCACAAATC--------------------AA
GTTTTGAAGCAAACCTTTTGCATCAGTGAAAACAGTTTCATGTCACTTCGTGGAACACCGTAGGCAAGATAAGCCTGTAA
AGGGAT-AAAGCACCATCAAGTCTCGCGTCAACTATCAACCAAGTCTATCTCCATAACCAGAAAGGCTACACAA------
--CTAAAGCGAGTCTGTCAATTCACCATACGTGCATCAACAAGGCGTTGTACAGATTGATCCAAAACGCCAATCTCGCGT
CGTCGCTGAGATGAACAGGGTTTACTTCTGCCAGCTGTTCAATCAGCAACCTGCACTCC-AATTAGCATCCATCAGTACG
GAT-------TAGTGAATTTTAAATCAAAACCAAAGCATCAAGACATGCTAAGAACACTGCCCATCTTTT-TGGTATTCA
GAC-TTGCAACTAAAATTGTGATTTCTTGGG-------------------------------------------------
-------------------------
>chr7B_995
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------------------CGTCGTTGTGCCGCG--CGGGGATGGCGGGGCAGGCGCCGGCTGTGGTGGCGTTCGCGTTG
GCGGCCGCCATCCTCTCGACGCCGCCTCCGCAGTCGTCGGACAACTTCTCCAACATCCCGCCCACGCTCTCCGGTACGTA
CCCCCTTCATCGGCGCGAGAGACCACCGAT---------------------------GGCACATCACAGGCATATAATCA
-----GTTGATGATGGAGGTGATCGAACGAGCTTGTAGGGGACGACAAGGCGCAGGTGAGGATCAAGCACCCCAAGTCGG
CCAAGGCGCTGCAGTGCACCTCCAAGTGCGTCGCCACCTGCATCCGCGGCGGCGAGGGGCCCCTCAATGTCCGGAGGCCC
CTCGTCGTCTTCAAGGAGGGGCAGTTCCGCAGCCGCCTCTACTGGTAATCAATCAGCAACGGCACCTC-------GCGTA
CTAGTACAACCGGAGGCGACTAACTGATGAGTTGCATGTATGCGATTAATTCTGTGCAGCCTGACAGAGTGCTCGGACAT
CTGCAACCTCATCAAGGATGGCGAGGACGGGCCATGAGA--------TGAACGAAGCTCTTGCCCAGGAGAAATGACAGG
CACGTTCATGGCCAAACTGGGACTGCATTTCTCACAAGAGT------G-AATCGCGGCGGAAATTCCGAAAGGAACCACG
GCGATCATGCGGTGAAGAGATCATAGTAGGGAGGGAGGGAGCATCGTCATGGAATTTCTGTACTTTCTACCACTTGCTTA
TAGCTGTACATGACACAGCAAGCAGAGCAA----TACATTTTTGGCATCGTCAGGACCATGAGCAACAGAGATACAGCAT
GA----ATGAATGAATGCCTTCAACTGATAACCTGAATTTTATTCTGCATCAAATACAGCATCTTTCAATGGATTC--GA
CGAGAAGTTGAAGATTCCTGTCTGTTTCTAGCCAAGCTGTTGCAAAC--------TGTTGAAACAAACCTGCTGAACTCA
CTGCACTTGCAATCCTTTC-GACTTGCGCACTTGCTGAAGCTGCTAGGTTCAACTGTCAACAATCTAGGTTTCCTTTCTT
GCTTATAAATTGTACCACTAC-----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------ATGACAAGTACCGCAGATCATAGCTGCAGGCACACAATACATTTTGCCACATA---C--------
-------------------------------------------A-----TGTAGTCAGTAGATACTAGATACACAACACC
TTCATAACGATCACCTTCATTTTATTTGCTAGCTAGTTAGACATCAACCACTATCATATACAA-CATTTTGCGCTGAATT
CGACAAGAGGTCGAGGCAAACCAGCCAATTAATCCAGCTTACGTGCTCAAGATTTATCTGACATCC-GAGGAGGATATCG
GTCTTCTAATCCAGCCGGCCGCCG--------------------------CGGATGATCACTGGATGTGCACT--TGTGA
TCCTAGACCTGGTCGAGCACTTGCTGTTG--CCGAAACAGCTCAGTTCGACAGCCGACAATATAGGGCTTCCTTGCACCT
CTGACTTGATGA-TCGACTGTTACAACATACAGATATTCAGTACATGGAAATACACAT--------GCTGTTGCACAAGT
ACTAGTCAGAATACAGTTTAA-ATGTTGGACATTATCTTAGCTTACCAGTCAGTTCGATGATCCCATATCAGGCAGGAAG
AGGTATCGAAACCGAGAGTCGAACGGGATGATGCCGAAAGTCCGGGTGCCCAGGAGGCTTTGCCGCCTCTGAGACACGCA
GTGCTCGACGAATGTAGCCTGCTGCTGAGGCAGGAAATGCGATATCCAGATAGGGAAGCTGTTGTCGTCGACGAATCCTC
GCGCAAAACAGTGCAGCATTTTGGGGATCAGAAGCTTCCCCTTTCGGCTCACTCCTACCGATGCTCTGATGAAATCGCGC
TGCGCGTCCTGAAGCTCTTCCCTTACGTTGCTGGCTGTGTAT--------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------ATCTTCACCTGCAGTGATAAATGCTCGTCAGTTAAGTACAAAAAGGT-----------
----------AGAAAAATGGTGGTGCTACA-TTTGTATCGGAAGTCGTCAAATGAATTATCTAAACTTACTGCAGGCGAA
GAATACATTCCACAGCTGAGGGCAAATGTCAGAAGTGGTTCCGCTGTTGAAATGCAGAACTTTCTCTGGTCCTCAGGTGA
CTTTATCTTCTGAAGGGCAAGAAGCAGAGCCTTAAGCAAAACAAAGAAGAAGCTGTCATCAGTTTGCATTCATGAACAAA
CAAGCAGATTTGTCACAAAGATGCACTGCAGCTCACATACCATCTGTGGTCTGTGATTCGGCGGCTTCATCTTCAAAATA
ACATATTCGATGAATGCTGCACTGAATGAATTCCCTCCAATTGTATATGCAGCCTAGAATAATAGG-ATTGCAAAAATGT
TAGACATAAAGCATCACAAAGTACTGAGGAATGGAAAAATAGTTAGATGGATATAGGTTTTAATGAGCAAGAATCAAGAA
GTTTTGAAGCAAACCTTTTGCATTAGTGAAAACAGTTTCATGTCACTTCGTGGAACACCATAAGCAAGATAAGCCTGTAA
AGGACACAAAGCACCATCAAATCTCGCCTCAACCATCAATGGAGCCTATAGCTTCAACCAGAAAGGCTACACAATCACAC
AACTAAAGCGAGTTTGTCAATTCACCGTACATGCATCAGCAATGCGTTGTACAGATTGATCCAGAACGCCAATCTCGCAT
CGTCGCCGAGATGAACAGGGTTTACTTCTGCCAGCTGCTCAATCAGCAACCTGCACTCT-AATAAGCGTCCATCAGTACT
GATTGC------------------------CCAAAGCATCATGAAATGCTAAGAACTCTGTCCATGTTTTATGGTATTCA
AACTTTGGAACTAAAATTGTAATTTCTTGGGCTAGA--------------------------------------------
-------------------------
>chr5D_1873
--------------------------------------------------------------------------------
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CGAGAAGTTGAGGATCCCTGTCTGTTTTCAGCCAAGCTGTTCCACACTGATCCAGTGTTGAAACAAACATGCTGAGCACA
CTGCACTTGCAATCCTTTCTGACTCGCGCACTTGCTGAAACAGCTATATTCAACTGTCAACAATCGAGGTTTCCTTTCTT
GCTTATAAATTGTACTACTAC-----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------ATGATAAGTGCCGCAGATGAGAGCTGCAGGCACACAACACATTTTGCCACATA---C--------
-------------------------------------------AGTACATGTTGTCAG-------TAGACACACAACACC
TTCGTAACGATCGCCTTCATTTTATTTGCTAGCTAGTTAGACGTCAACCACTATCATATACAAACATTTTGCGCTGAATT
CGACTAGAAGTCGAGGCAAACTAGCCAATTAATCCAGCTGGCGTGCTCAAGAGTTATCTGACATCCTGAGGAGGATACCA
GTCTTTTAATTCAGCCGGCCGTTGCACATTGGTTCAGTGCTGAAACAAACCGGCTGATCACTGGATGTGCACCTGTGTGA
TCCGAGACCTGGTCGAGCACTTGCTGAAAGCCCGAAACGTCTCGGTTCGACAACCGACGATATAGGCCTTCCTTGCACCT
CTGACCTGATGAATCGACTGTTACAACACACAGATATTCAGTACATGGAAATACAC------------------------
--TCAGAATGCAAAT-TTTGA-ATGCTGGACACTATTTTAGCTTACCAGTCAGTTCAATGATCCCATATCAGGCAGGAAG
ACGTATCGAAACCGAGAGTCGAACGGGATGATGCCGAAAGTCCGCGTGCCCAGGAGGCTTTGCCGCCTCTGAGACATGCA
ATGCTCAACAAATGTAGCCTGCTGCTGAGGCAGGAAATGTGATATCCAGATAGGGAAACTGTTGTCGTCGACGAATCCTC
GCGCAAAACAGTGCAGCATTTTGGGGATCAGAAGCTTCCCCTTCCGGCTCACTCCTACCGATGCTCTAATGAAATCACGC
CGCGTATCCTGCAGCTCTTCCCTTACGTTGCTGGCTGTGTATGGATCCGGCTTGCCTGCTCCCTCTCCATGCTCCCATCC
GTGCTCCCGCTTCATCCTACGGCTGTTCTTTTTCCTTTTTTTTTTCTAATCTAATCATCTCTCCCCCTGATTTTCAGGGG
GTGGGGCCGGGCCTTATTTTCTTCCAATCAAATCAAGCCACGTATGCGGGAGCACGGATGGGAGCATGGGAAGGGAGCAG
GCAAGTCTCGTCCGCTGTGTATATCTTCACCTGCAGTGATAAGCGCTCATCAATTAAGTACAAAAAGGATGCAGTGCACG
CTACTTTGTGTGAAAAATGACAGTGCAGCATTTAAAAATAAAAGCCATAAAATGAGTGAGCTAAACTTACTGCAGGGGAA
GAATACATTTAAA--------GCAAGCGTCAGAAGTGGTTCCGGTGTCGAAATGCAGAACTTTTTCTGGTCCTCAAGCGC
CTTTATCTTCTGAAGGGCAAGAAGCAGAGCCTTCAACATAACACAGGAGAAG----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------
>SNPs
------------------------------------------S-------------------------------------
----S-----------------------------------------------------------S------S--------
--------------------------------------------------------------------------------
--------------------------------------S---------------S-------------------------
--------------------------------------------------------------------------------
---------------------------------------S----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------S--------------
------------------------S----------------------------S--------------------------
---------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSS--------S--S---------------------S------S----------------------SS------S-----
----S-S-SS-SS-SSS----SSS-SSS-SSS--SS--------------------------------------------
-----------------S--------S----------------------------------------------------S
-S-S-SSSS-S------------------------S---S---S------SS--------------------SS-SS--S
-SSSS----------------------S----------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------S-----------------SSS-
-----------------------------------------S--------------------------------------
---------------------------------------SSS-----------------------S------S--S----
-------------S-------------------------------S--S----------S--------------------
-S---------------------------------------S--------------------------------------
------------------S-----------SSSS-------------------S--------------------S-SSS-
-------------------------------------------------------S-------------------SSS--
-------------------------------------S----------------S-------------------------
---------------------------------------------------S----------------------------
-----S--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------S-------S-----------
--------------------------------------------------------------------------------
---------------------------------------------S----------------------------------
-----------------------S------------------------------------S-------------------
------------------------------------------------------------------S-------------
---------------------------------S------------------------------------------S---
----------------------------------------S-------------------------------S-------
---------------------S----------------------------------------------------------
--------S-----------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------S------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------S-------S-------S--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------S-------------------
--------------------------------------------------------------------------------
-----------------------------------------------S-----------------S--------------
-----SS-----------------------------S------S---------S--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------S-------S--------------------------
----------------S--------------------------------------S---S---------S----------
--S-S-SSSS---------S--------SS-------------------S------------------------------
S--------S--------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSS
>forward_1028
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------GCTGAGCAGAGCAGAGACAA------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------------------------
>reverse_3986
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------------------------GCGTTGCAAAATGGT
AGTGC---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------------------------
