>input_sequence_42407
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--------------------------------------------------------ATGGAGATGGTGGCGCTGCGGAGC
CAGGAGGGCGTGGATTTCGTGGTTCCCGCGGAGGAGGCCAGGGTGTCCATGTTCTTACGTCGTAGGATGGAGCTCGACCG
CGAAAACTACATCGTCCCCGCCGACGGCGACGAGACCAAGTATACCCACATCTTGCTCCGCTCCATCCGAGCGGACGTCC
TGCCCAAGGTTCTGCACTACTGCAAGAGGCACGCCATTGCCACCGACGACGACCGGGACCTCG---GCGACTGGGACGCG
GAGTTCGTCGGCAGTGTCGACCTCGACACCCTCTACGATCTCATCCTGGTGATTCATTAATCAATTTGTTTCCTCTCCA-
----------------------------------------------------TCTCTTCTCCCATCACACAACCAGC---
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--------------------------------------------------------AACTAATCATGTGCTTGCTTGCAC
CGTATTTTTTT---CTTCAACTTTTGAGTTTTTTTTTTG---AGACAATTCAATTTTTGAGCTTTGAAGCATATAT--TG
ATCGTGTTAGTCACCGT--TAAATCGCAGGCTTCGGAGAAGCTCGAGGTCCGAGGGCTCCTTGGTCTGGCCTGCCGGGCC
CTCGCCGGCAAGATCAAGGGGAAGTCGCCACGCGAGACCTGCCATATCCTCGACGTCAGGGGCGTCTTC-----------
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-----------------------------GACGACGCCAATCATGAC---------------------------------
------------------------------------------CTCAAGTTGGTGGAGAAGGCGTTGGCGGCTCTTAACAT
AGTCCGTTGCCAGGACTTCACCCAATACGAACCCAAGCTCAATGCTTTCAAGTGTAGTCGATACCACAATTTTGAGAACC
TAGCCTTCTTCGACTTCGACAAAGAATGTGAGTGTT-------CAATTTTCGGTCACCATCACCAAAC---TTCTTCTTC
TTCTAGGTCTTCACTGCGCGACACAATATTAATACATAAGTACGCACGTGATACATGTTGGTTTTGATTTGTGATCATG-
----------------TGCAGCCAGCTTCCAACGTGGTCCGCCGCTCCACAAGTTACCTTCACCC---GAGTCGATCCAG
CGATATTGCCTCAATGTCATTTCTGTCAAGGCGCGCGAATCGGATGTTGGCTATCCGATCAGTGTGTTTGGAACCGTTAT
AGCGAGGGACTATGTCGACTATAGATGCGTCTATCTGTTTAGGCGTGAAAGGGATGATCCCCAGCTCATCAGCTCTCCCG
TATGTACCTTGATCTTTGTTCCTCGCCTTGTTAATTGCTGCTTATTATATCATTCCACCGTTTT-TGCTCGGAAATGTA-
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AGGCGTGTTTGACATCTTTTCTTTCCTTG---------------------------------------------------
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-----------------------------------------------------------------AACCCTTTTGCAGGA
TGATATGTTATCTTTGGTAGATCCATGTCGAGCACTTGTTCCGATAGACAACGTTTATTTTGAGACTGATTTAAAGATCA
AGTGTGATGGAGGGGCAGATAGAGTTTTCAGTAAAGGCATAACGGAATTCAATTGGGTTTGCATCCCTACATACAAGCAA
ACCATGGCGGTCAGTGTGTATAGTTTCCTGAGTGACATGGAGTTTTTATGTGCACTGGTACACGAACCCGTGGAAGCCAC
CATTGCAATCAATGTTTTGAAGGGGCCATGTAATATCTCAAGAGTAGCCGCTTCGGCTCCCGGAAACTTCAAGGATCATG
TCGTTCTATACGAATCAGCGGGCAGTCCGACGGTAGTCGGCGATGGTGACTCCATCCCGTTAACTCGGAGCGTGGTAGCT
ATCTCTCTAGATCAAAAGTTGGCGCTCTTCCTTGTTGGTGGTGACGCGTGTGAACACCTTGCTCTCACTCTAGGACATTC
CGATCAAGTGCTTATTCGCAAGATGGGTTGTGCGGTGTTGGAGGTAATAGTTGGTTGGACATATGTGCCGAGAAGAGAGA
GGCCTAATATGTTTAAGGTTATCGGAAAACATACACGCCTCTTGCTGTGA------------------------------
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>chr3D_1_TraesCS3D01G543200
TGTGGATCCATGTGTTTGTTAGTCTAGTAGATGTGTGATTGGACTCGTTCTTGTGTTTTCTCCTTGTTCTTCG-CGGGAC
CCCCTCCAATTCATGAAAGACCGGCCCCATAGAGTTCCACCCTATATCATCTTGGTATCATGAGCCATATTGATCACGAA
TTTGGAGTC-CCCCCTTCATTTTCTAGCCTAATTTTGTGTGCTTTTGTCCCAA--TTCCAAAATCCCCACCAAAAGTAGC
CCTCCCAAATCTTTTGCATTTTGTTGGTTCTTTTGAGATTTTGTTGTGTTTGATCCATGATTTTGTTGTTTGGCAAGTGG
ATCTTGGCA----------TT-CCCAACCCCCCACCACGAAATCCATTCATTTTTTTTCCTTTTCTCCATCAATTTTGAC
CCCGAAATCCCAAATTTCCGCCCAAAATCGCGTCCCGGATATGAAATCCCGAGTTGACCCAGACTCATCAGACATATG--
-----------------GAGCCTTCGGAACCACCAGATGTCCGGTATTTACTGGAAATCCGACCGCCCAAAAAAAGAGCC
GAATTCTC-----------------GGATGTCCAGTAGCCCAGAAAACTGACTTCGCTGAAATTTTGTTTTGGCCATAAC
TAATTCATCCGGAGTCCGATTTTGACGTTCTTTAGCTCGTTTTGTAGCTATTGACACCCCCAATGCATCTCACAAAATTA
CCACCATCATCATTTGACTCCATCAAAGTTTCTGAAATTTGGCACTTATTATTTGGGCAGATTGTGTGTGTGTAAACTTT
CTATATTTGTAGTACAAGGCTAGTGTAAGTTATTTTTATTTAGGAGTCCTTGCTAGGCCGTACTGTAATTGGATTCAGAG
CGGACACCGGAGGCCTTGTCCGAGATGGAATTGAATTGTAG------GAGCCCAGCT--AGCTAGGTATGATGCAATCGG
TACCACCTCGTCCGTAGGCAGCCCTGCACTTAATTTGCAGGCAGA-----------------------------------
--AGCGAATCCAAGGAATCCAAGGAATCGAGGACGACGACGACGACGAGGAGGAGGATGGAGATGGTGGCGCTGCGGAGC
CAGGAGGGCGTGGATTTCGTGGTTCCCGCGGAGGAGGCCAGGGTGTCCATGTTCTTACGTCGTAGGATGGAGCTCGACCG
CGAAAACTACATCGTCCCCGCCGACGGCGACGAGACCAAGTATACCCACATCTTGCTCCGCTCCATCCGAGCGGACGTCC
TGCCCAAGGTTCTGCACTACTGCAAGAGGCACGCCATTGCCACCGACGACGACCGGGACCTCG---GCGACTGGGACGCG
GAGTTCGTCGGCAGTGTCGACCTCGACACCCTCTACGATCTCATCCTGGTGATTCATTAATCAATTTGTTTCCTCTCCA-
----------------------------------------------------TCTCTTCTCCCATCACACAACCAGC---
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--------------------------------------------------------AACTAATCATGTGCTTGCTTGCAC
CGTATTTTTTT---CTTCAACTTTTGAGTTTTTTTTTTG---AGACAATTCAATTTTTGAGCTTTGAAGCATATAT--TG
ATCGTGTTAGTCACCGT--TAAATCGCAGGCTTCGGAGAAGCTCGAGGTCCGAGGGCTCCTTGGTCTGGCCTGCCGGGCC
CTCGCCGGCAAGATCAAGGGGAAGTCGCCACGCGAGACCTGCCATATCCTCGACGTCAGGGGCGTCTTC-----------
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-----------------------------GACGACGCCAATCATGAC---------------------------------
------------------------------------------CTCAAGTTGGTGGAGAAGGCGTTGGCGGCTCTTAACAT
AGTCCGTTGCCAGGACTTCACCCAATACGAACCCAAGCTCAATGCTTTCAAGTGTAGTCGATACCACAATTTTGAGAACC
TAGCCTTCTTCGACTTCGACAAAGAATGTGAGTGTT-------CAATTTTCGGTCACCATCACCAAAC---TTCTTCTTC
TTCTAGGTCTTCACTGCGCGACACAATATTAATACATAAGTACGCACGTGATACATGTTGGTTTTGATTTGTGATCATG-
----------------TGCAGCCAGCTTCCAACGTGGTCCGCCGCTCCACAAGTTACCTTCACCC---GAGTCGATCCAG
CGATATTGCCTCAATGTCATTTCTGTCAAGGCGCGCGAATCGGATGTTGGCTATCCGATCAGTGTGTTTGGAACCGTTAT
AGCGAGGGACTATGTCGACTATAGATGCGTCTATCTGTTTAGGCGTGAAAGGGATGATCCCCAGCTCATCAGCTCTCCCG
TATGTACCTTGATCTTTGTTCCTCGCCTTGTTAATTGCTGCTTATTATATCATTCCACCGTTTT-TGCTCGGAAATGTA-
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AGGCGTGTTTGACATCTTTTCTTTCCTTG---------------------------------------------------
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-----------------------------------------------------------------AACCCTTTTGCAGGA
TGATATGTTATCTTTGGTAGATCCATGTCGAGCACTTGTTCCGATAGACAACGTTTATTTTGAGACTGATTTAAAGATCA
AGTGTGATGGAGGGGCAGATAGAGTTTTCAGTAAAGGCATAACGGAATTCAATTGGGTTTGCATCCCTACATACAAGCAA
ACCATGGCGGTCAGTGTGTATAGTTTCCTGAGTGACATGGAGTTTTTATGTGCACTGGTACACGAACCCGTGGAAGCCAC
CATTGCAATCAATGTTTTGAAGGGGCCATGTAATATCTCAAGAGTAGCCGCTTCGGCTCCCGGAAACTTCAAGGATCATG
TCGTTCTATACGAATCAGCGGGCAGTCCGACGGTAGTCGGCGATGGTGACTCCATCCCGTTAACTCGGAGCGTGGTAGCT
ATCTCTCTAGATCAAAAGTTGGCGCTCTTCCTTGTTGGTGGTGACGCGTGTGAACACCTTGCTCTCACTCTAGGACATTC
CGATCAAGTGCTTATTCGCAAGATGGGTTGTGCGGTGTTGGAGGTAATAGTTGGTTGGACATATGTGCCGAGAAGAGAGA
GGCCTAATATGTTTAAGGTTATCGGAAAACATACACGCCTCTTGCTGTGAGAAGGTATGGCGTCGATGGAGGCCACATAT
TAGTTGTTTGTATAGTTGTG---GTACTCCTTCAATTAGAAGATGTAAGGCGTTACATAATTTTGTTTTAGATGTAACAT
AATTTTGTATTAGATGTAAGGCGTTATGTGAGAGGATTTCACGAAATGTAATTGGAGGTACTGTGAGCTTTTTGTTCATA
AAAAAAATATGGTTTGCAAGAGCATGAAATCAGCATAGATCAATATGCATATACATAGTATAGATAAGTGTTGTGGCATT
GTGGGTCTTGACAACTATATATATACTTGCATTGTGGATCTTCTGGTCGTAAGGAAGAAAGGAAGCAAAGCAGCTGCTGC
CGCTGTGTGACCCTAACACTCGTCCAGTGGGTGAGAGTGACCCAGGCAGCACAGCACACCACTGAGCGCAGTGGCGGAGC
TTGAAAGAAATCTTTGGAGGGGCGAAGCTATAAAAAACAAATACTAAATCATACGAATACAACAAGTTAGAAAGTTAGAT
ATTGCAAATATCAAGTACAGATAATTATATTGATCTTCTCCAGATTAGCTTGCAAAATACATTTATAATCAGTAGAGAAT
TCAGTTCACTACAAAGTGCTATTTAACATGGAGCATTCAGTTCACTACGGATCAGCTCCAGAACAAAAGAAAGAGTCAAT
TACACTGATGGTGCTATAACTTGGCGCGAACGGTCACTTTAGTACTACAAGTTGTGGTGTACATTGAAGTGATTCAAAAA
CTTGGCTCGGACGTGCGAATACGGTTGCTTATCCCGTTTGTATACGAAATGTGCACTGACTAGGCATGTGGACCCTAAGA
GCGTGTGGCCTGATTTTCACAAAATAAACCTCGGAATTTTGATTTTTAAAAAAAGGTCCATGTAGACGTGGCATTCTTCA
CCTCAGTGACCAGCGGGTTCTGCCTGTTAAAAATAAATAACAAAAAAGTAGGTGCCGCCAGGATTTGAACCCAAAACCAC
TTGCTACATCATG
>chr5B_49
------------------------------------------------TCTCGTGTGTTCATCGTGTTCTTCG-GGAACC
CCCCTCCAAATCGTGAAAGACCGGCCCC-TAGGGTTCAACCCTAAATCACCTTGGTATCATGAGCCATGTTGATCACGAA
TTTGGAGTCTCCCCCATCGTTTTCTAGCCTAGTTTTGCTTGATTTCATCTTAAATTTCAAAAATTCCCACCAAAAATAGC
CCCAATTTT--TTTTGTGATTTGTTGGTTTGATGATGGTTTGTTAA--TTCGATCCACGGATTTGCTGTGTTTCAAGTAG
ATCTAGCTTCTCCACAAGTTTTCTCACTTTCCATCCACGAAATCTCCTCAATTTTG-----------------------C
CCAAAAATCATCAATTTTCGCCCAAAATCATGTCTTGGATCTGAAATCCCGAGTTGACCTAGACCCGTCGGACGTCCGAC
ACTATTCCGAACGTCAAGAGCCCTCCGAACCACTGGACAACAGGTATTTACTGGAAATCCGACGCCCCAAACG-AGAGCC
GAATCCTC-----------------GGACGTCCGGTAGCCCAAAGAACTGACTTTGCTGAAATTTTGTTTTGGCCTTAAC
TAATTCATCCGGACTCGGATTTTGACGTTCTTTAGCTCGTTTTGTAGCTATTGACACCCCCTTTAA----CACAAAAATA
CTTACAACATCATTTGACTCCATCAA-GTTTTTGTAATTT----------------------------------------
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>chr3B_65
----------------------------------------------------------------TGTTCTTCATGGAATC
CCCCTCCAATTCGTGAAAGGTCACCAAATAGGGTCTCCACCCTACATCATCATGGATCAGAGTTTAGGGTC--TCATGAA
TTTTGAGTATCCCCCTTCATTTTCTAGCCTAATTTTGTTAGTTTTCATCCCAA--TTTGAAAATCCCCACCAAAATAGCC
ACCATTTTT--TTTTGCATTTTGTTGGTTCTTGTGAGATTTTATTGTGTTTGATCCATGATTTTGTTCTTTTGCAAGTGG
ATCTTGGCA----------TTCCCCACCTCCCCACCATGAAATCCACCCAAGTTTTTTCA--TTCCCCATCAATTTTGAC
CCCAAAGTCATCAATTTCCATCAAAAAACACGTCCCGGATCCAAAATCCCGCGTTGACCCCGACCCACCAGATGACCGAC
CTTTTTCCGGACGTCCAGAGCCTCCCGAACCACTTGATGTCCGGTAATTACTAGATATCAGACGCCCCTATACAATACAA
AATTACCGGAAGTCCAAACTTTACGGTACGTCCAGTATCTGTGCAAACTGACTCGGCTGAAATTTTGTGTTGGTCATAAC
TAATTCATCTGGAGTCCGATTTTGACTTTCTTTAGCTCGTTTGATAGCTATTTACACCCACCATCCATATAGATAGG---
-TTCCAACACCATTTGACTCCATCAAAAGTTT------------------------------------------------
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>chr3B_787
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-------------------------------------ATTTAGGAGTACTTGCTAGGCCGTACTGTAATTGGATTCAGAG
CCGACAGCGGAGGCCTTGTCCGAGATGGAATTGAATTGTAG------GAGTCCAGGTCCAGCTCTTAATTTGCCCA----
---------------AGGCGGCCCTGCACTTAATTTGCAGACATCCCTCAGAAAAGAAAGAAAAACTTAATTTGCAGGCA
GGAACAAATCCAAGGGATCGATGGCGGCGGAAGAGACGACGGC------------GATGGAGATGGTGGCGCTGCGGAGC
CAGGAGGGCGTGGATTTCGTGGTTCCCGCGGAGGAGGCGAGGGTGTCCACCTTCTTACGTCGCAGGATGGAGCTCGACCG
CGACAACTACATCGTCCCCGCCGACGGCGACGACACCAAGTACACCCACATCTTACTCCGCTCCATCCGAGCCGACGTCC
TACCCAAGGTTATGCACTACTGCAAGAGGCACGCCATTGCCACCGACGACGACCGGGCCCTCA---GCGACTGGGACGCG
GAGTTCGTCGGCATCGTCGACCTCGACACCCTCTACGATCTCATCCTGGTGATTCATTAATCAATTTGTTTCCACTCCA-
----------------------------------------------------TCTCTTCTCCAATCACACAATTCCCAA-
--------------------------------------------------------------------------------
------------------------------------------------------TTAATTAATCATGTGCTTGCTTGCAT
CATATTG-TTT---CTTCAACTCTTGAGTTTTTTTTTTGTTGAGACAATTCAACTTTTGAGCTTTGAAGCATATAT--TG
ATCGTGTTATGTACTATTATAAATCGCAGGCTTCGGAGAAGCTCGAGGTCCGAGGGCTCCTCGGTCTGGCCTGCCGGGCC
CTCGCCGACAAGATCAAGGGGAAGTCCCCACGCGAGACCTGCCATATCCTCGACATCAAGGGCGTCTTC-----------
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-----------------------------GACGACGCTAATCATGAC---------------------------------
------------------------------------------CTCAAGTTGGTGGAGAAGGCGTTGGCGGCTCTTAACAT
AGTCCGTTGCCAAGACTTCACCCAATACGAACCCAAGCTCAACGCTTTCAAGTGTAGTCGATACCACAACTTTGAGAACC
TAGCTTTCTTCGACTTCGACAAAGAGTGTGAGTGTT-------CAATTTTCGGTCACCATCATCAAAC---TTCTTCTTC
TTCTAGGTCTCCACTGCACGACACAATATCAATATATAAGTATGCATGTGTTACATGTTGGTTTTGATTTGTGATCATGG
CTTTTTTTTATTCATGTGCAGCTAGCTTCCAACGTGGCCCGCCGCTCCACAAGTTACCTTCACCC---GAGTCGATCCAG
CGATATTGCCTCAATGTCATTTCTGTCAAGGCGCGTGAATCGGATGTTGGCTACCCGATCAGTGTGTTTGGAACCGTTAT
AGCGAGGGACTATGTCGACTACAGATGCGTCTATTTGTTTAGGCGTGAAAGGGATGATCCCCAGCTCATCAGCTCTCCGG
TATGTACCTTGGTCTCTGTTCCTTGCCTTGTTAATTGTTGCTTATTATATCATTCCACCGTTTTTTGCTCGGAAATGTA-
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AGGCGTGTTTGACATGTTTTCTTTGCCTG---------------------------------------------------
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-----------------------------------------------------------------AACCCTTTTGCAGGA
TGATATGTTATCTTTGATAGATCCATGTCGAGCGCTTGTTCCAATAGACAACGTTTATTTTGAGACTAATTTAAAGATCA
TGTGTGATGGAGGGGAAGATAGAGTTTTCAGTAAAGGCATAACGGAATTCAATTGGGTTTGCATCCCTACATACAGGCAA
ACCATGACGGTCAGCGTGTACAGTTTCCTGAGTGATGTGAAGTTTTTATGTGCACTGGTTTACCAACCCGTGGAAGTCAC
CATTGCAATCAGTGTTTTGAAGGGCCCATGTAATATTTCAAGAGTAGCCGCTTCGACTCCCGGAAACTTCAAGGATCATA
TCGTTCTATACGAATCAGCGGGCAGTCCGATGGTAGTCAGCGATGGTGACTCCATCCCGTTAACTCGGAGCGTGGTAGCT
ATCTCGCTAGATCAGAAGTTGGCGCTCTTCCTTGTTGGTGGTGACGCGTGTGAACACCTTGCCCTCACTCTAGGACCTTC
GGATCAAGTGCTTATTTGCAAGATGGGTTGTGCGGTGCTGGAGGTAATAGTTGGTTGGACATATGTGCCGGAAAGAGAGA
GGCCTAATATGTTTAAGGTTATTGGAAAACATACACGCCTCTTGCTGTGAGAAGGTATGGCGCCGATGGAGGCCACGTAT
TAGTTGTTTGTATAGTTGTG---GTACTCCTTCAGTTAGAAGATGTAAGGCGTTACGTAATTTTGTTTTAGATGTAACAT
AATTTTGTATTAGATGTAAGGCGTTATGTGAGATGATTCCACGAAATGTAATTGGAGGTACCGTGAGCTTTTTGTTCATC
AAAAAATTATGGTTTGCAA-AGCATGAAATCAACATAGATCAATATGCATATACATACTGTAGAGAAGTGTTGTGGCATT
GTGGGTCTTGACTACTATACATA---------------------------------------------------------
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>chr3A_794
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--------------------------------------------AGTACTTGCTAGGTCGTACTGTAATTGGATTCGGAG
CGGACAGCGGAGGCCTTGTCCGAGATGGAATTGAATTGTAGTTGTAGGAGTCCACGTCCAGCTAGGTACTCTATGCAATC
TATTGTACTT---GTAGGCAGCCCTGCACTTAATTTGCAGGCAGA-----------------------------------
--AACAAATCCAAGGAATCCATGGCGGCGGAAGAGACGACGACGACGACGACGAGGATGGAGATGGTGGCGCTGCGGAGC
CAGGAGGGCGTGGATTTCGTGGTTCC----------------------ACCTTCTTACGTCGTAGGATGGAGCTCGACCG
CGACAACTACATCGTCCCCGCCGACGGCGACGAGACCAAGTACACCCATATCTTGCTCCGCTCCATCCGAGCCGACGTCC
TACCCAAGGTTCTGCACTACTGCAAGAGGCACGCCATTGCCACTGACGACGACCGGGCCCTCGGCGGCGATTGGGACGCG
GGGTTCATCGGCAGCGTCGACCTCGACACCCTCTACGATCTCATCCTGGTGATTCATTAATCAATTTGTTTCCTCTCCA-
----------------------------------------------------TCTCTTCTACAACCACATAACCAGC---
--------------------------------------------------------------------------------
--------------------------------------------------------AACTAATCATGTGCTTGCTTGCAC
CATATTT-TTTTTACTTCAACTTTTGAGTTTTTTTTTTTG-GAGACAATTCAACTTTTGAGCTTTGAAGCATATATATTG
ATGGTGCTAGTTACTGT--TAAATCGCAGGCTTCGGAGAAGCTCGAGGTCCGAGGGCTCCTCGGCCTGAGCTGCCGGGCC
CTCGCCGACAAGATCAAGGGGAAGTCGCCACGCGAGACCTGCCATATCCTCGACATCAGGGGCATCTTCGACGGACGCGG
ATCTTTCACGCATATGCTTCGGAGCCCTGCTATCTTGGCCATCCGCCACTGTTGTGTGTCTCGAGATGCGAGGAGAACCT
ATGGGCACTTAAACTCTCGATTAGCAGGAGTAGTTCTGTAGGTCTGCTTCGTAGGTCCTCCTCCAGGAATAGTGGCCGGC
AGTAGACTTGTATGGTTTTGTTGTTTTTCACACAGTGCCAGCATCTCCCAGCACAAAAAGCATTATTGTATGAGGTCCAT
GCATGTCTCTCCTTCAAAGCTCTGTCACATGCATGCTCAATCTTTCTCACACAAGCTATCTCTTTTCTCACCCTCTCATA
TGCTGCACAAGCTCTCTTTTACCTACGAAAATAAAAGGCTTTCTCTCATACTCTCACACTCAAGTTAAAAAATAGCAAGT
TCAGAATGACACTGTTTCTCTCTCTCACTCCTCTCACAGGTTCTCTCCCTTCAGTTTCTCAAAGCGAGTTGTTCTCTCAG
CCCCAGTTCTCTCTCATTCAAAGCCCACACTTTTTTCTCAACGAAGGAGTAGCCAGCCCTCTAATGGCGGTCCAATCTGC
GGCGTCCCTCTTTCTCTGCAACACAACCCAAATGCTAGCAAGGACATGAGAGATAAAGAGAGAGAACTCTTCCGCGCATG
CGCACAATGACTTTCTGTGAGTTTTCTTGTCCTTGTCCGCTTCCTGGTGTCTTTTGTCTAGGTAGCATGTAGCAGGGTCA
GGGGAGCAGTGGCCTACCACTTCGTAGGTTGATCACAGTGGACAACCTGTATATACCAACGTGGTTATGAACTGCAAAAC
CTGAAGATGAGCTTTGACCATGCCATGACCTCGTCTATCCCGAGGAATACATGCGGCCAGGATAGAGGCGCTCCGAAGCA
TATGCCTTCTCAAATATTATCCCGTCTTCGACGACGCCAATCATGAC---------------------------------
------------------------------------------CTCAAGTTGGTGGAGAAGGCGTTGGCGGCTCTTAACAT
AGTCCGTTGCCAAGACTTCACCCAATACGAACCCAAGCTCAATGCTTTCAAGTGTAGTCGATACTACAACTTTGAGAACC
TAGCCTTCTTCGACTTCGACAAAGAGTGTGAGTGTCGATACCACAATTTTTTATCACCATCATCAAACTTGTTCTTCTTC
TTCTAGGTCTTCACTGCACGACACAATATCAATATATGAGTATGCATGTGTTACATGTTGGTTTTGATTTGTTATCATGG
CTTTTATTTATTCATGTGCAGCTAGCTTCCAACGTGGTCCCCCGCTCCACAAGTTACCTTCACCC---GAGTCGATCCAA
CGATATTGCCTCAATGTCATTTCTGTCAAGGCGTGTGAATCGGATGTTGGCTATCCGATCAGCGTGTTTGGAACCGTTAT
AGCGAGGGACTATGTCGACTACAGATGCGTCTATCTGTTTAGGCGTGAAAGGGATGATCCCCAGCTCATCAGCTCTCCCG
TATGTACCTTGATCTTTGTTCCTCGCCTTGTTAATTGCTGCTTATTATATCATTCCACCGTTTT-TGCTTGGAAATGTA-
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AGGCGTGTTTGACATGTTTTCTTTCCCTG---------------------------------------------------
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-----------------------------------------------------------------AACCCTTTTGCAGGA
TGATATGTTATCTTTGATAGATCCATGTCGAGCGCTTGTTCCAATAGACAACGTTTATTTTGAGACTGATTTAAAGATCA
AGTGTGATGGAGGGGCAGATAGAGTTTTCAGTAAAGGCATAACGGAATTCAATTGGGTTTGCATCCCTACATACAAGCAA
ACCATGACGGTCAGTGTGTATAGTTTCCTGAGTGACGTGGAGTTTTTATGTGCACTGGTTCACGAACCCGTAGAAGCCAC
CATTGCAATCAATGTTTTGAAGGGCCCATGTAATATCTCAAGAGTAGCCGCTTCGACTCCCGGAAACTTCAAGGATCAAA
TCGTTCCATGCGAATCAGCGGGCAGTCCGTCGGTAGTCGGCGATGGTGAGTCCATCCCGTTAACTCGGAGCGTGGTAGCT
ATCTCGCTAGATCGGAAGTTGACGCTCTTCCTTGTTGGTGGTGACGCGTGTGAACACCTTGCCCTCACTCTAGGATATTC
CGATCAAGTGCTTATTCGCAAGATGGGTTGTGCGGTGCTGGAGGTAATAGTTGGGTGGACATATGTGCCGAAAAGAGAGA
TGCCTAATATGTTTAAGGATATTGGAAAACATACACGCCTCTTGCTGTGAGAAGGTATGGTGCCGATGGAGGCCACGTAT
TAGTTGTTTGTATAATTGTG---GTACTCCTTCAATTAGAAGATGTAAGGCGTTACATAATTGTGTTTTAGATGTAACAT
AATTTTGTATTAGATGTAAGGCGTTATGTGAGAGGATTTCACGAAATGTAATTGGAGGTACTCTGAGCTTTTTGTTCATA
AAAAAAAT--GGTTTGCAAGAGCATGAAATCAACATAGATCAATATGCATATACATACTGTAGA-AAGTGTTGTGGCATT
GTGGGTCTTGACTACTATACATATACT-----------------------------------------------------
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>chr3D_997
GAGGAGGG------------------------------------------------------------------------
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-------------------------------------------------------------GATGGTGGCGCTGCGTAGT
CAGGAGGGCGTGGATTTCGTGGTTCCCTCAGAGGAGGCGAGGCTGTCCATGTTCTTACATCGTAGGATCGAGCTTGACCC
CGACAACTACTTCGTCCCCGCCGACGGCGACGAGACCAAGTACACCCCCATCTTGCTCCGCTCCATCCGAGCCGAGGTCC
TATCCAAGGTTTTGGAGTACTGCAAACAGTCCTAT---------------------GCCTCCT---GCCGCTGGGACGGC
GCCCACCATCTCAACCACAAT---GAGACGCTCTATGATCTCATCCTGGTAATCAATTAAGCTAAGCTATTTCTTAATCC
AACTCTATCAAAATTATACATTATATTTATTTTAACTTGCATCCATACTGGTTCTCTTCTATCACAACATGTATGTTATT
TGTATTGTACTAAATCAGCGACAATTAATATGGATAGGAGGGAGTACATTAGATTATGCATGAGTGCTACTTTCATGTTG
TCTTTGCTTAGCCTAATTAATATACATAGTTCATCTATGATGCTTAACTGGTTTTTCTTTCAGCAATTGTGTGCTAGCAC
CATATTTTGTT---CTTCTCTTTAAAAGCATTGCACTACTATTTA-----------------------------------
--------------------------CAGGCTTCGGACTATCTTGAAGTCCATCGACTCCTTGACCTATCGTGCCAGACC
CTTGCCAATAAGATCAAGGGGAAGTCACCCCGTGAGATAGGTAATATCCTCAACATCACGGGTGTCTTTGCTCCCGAATT
AAATGAAGAGCATTCAAGTAGGTGTTGCAC--------------------------------------------------
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-----------------------------------------------------TACCAACATGGTATGTACACTTTCTCG
ACCCATATGGAGCTGAATTATATATCTTATGATTTGTTTCATTGACATTACTAACAACAAAATCATATACACCGCCATGT
ACTCTTATTCCTTAGTGGCGTGTGGATTGACTAACAACAAACATGTACCTGTTGGCGTGGATGAGTAGGTTACAGCGGCC
ATGGAAGTCATCTCCAAGAAGAAGCCATCTGTGAACCAAGAGCTCAAATTGGCGGAGAAGGCGTTGCAGGCTCTTGACGT
AGTTCGTCGCCAAGAGTTCACCGCATACGACCCCGTGCTCAGGCGTCTTAAACGCAATCGAGTTGACATCTTC---AACC
TAGCCTTCTTTGACATTTATAAAGAGAGTGAGTATTTTGGTGAGTGCTTGTTTGATCCATGCA--------TTCATCTTC
TTCTAGGTCTTCACTGCATGCAAATA--------------------------------TGTTTCTGACCTGTGATCATGT
CCTTTTTTCT--------CAGCTAGCTTTTCTCGTGGTCCACAACTTCACAAGATAACACCAATGCATGAGTCAGTTGTG
CGATCTTGTGTCAATGTAATTTACATTAAGGTACGCGAATCGGACGTCGGCTTTCCAATCAACATATTTGGTACCATTAT
TGCAAGGGATCAAGTCGACTATAGATGTGTCTATCTGTTTAGGCGTGAAATGGATGATCCCCAATTCATCAGCTCGGCGG
TA------TTTATATTTATTCCTTAACTAGTTAATCACTACTTATTGCTCTTTCCACACAGAAATGCAAGGACCGTTTTA
CTTTGTGTTCTCTAATGCACGATTTTGACTGCAATTCTTTGCTTGTAATATGCTTAAAAATAGTAAAAGGATATTTATCA
TAAAAAATATATTCCAAGGCATACAAAAATATTTATCTTACATGGTAAATCCACATACTTCTAGTATTAGTGACCAAAGT
TTTACAATGTCAATTGCATGCATAATCGTGCACCTTATATCTGAAGTTCTACCTTAGTTCTGAGGCAGAATATGTCCCAG
AAGTGTGTTGTCCATCTTCTCTTTCACTATCTATTATAATTTTATTATTGTGATTTTGTGATTGATATGTTCAAATAACA
TCATTTGATTTCTTCTGAAAAATCTAAGTGTGCTAGTTTTCACATCCACGCATTTCAAAACCTCCTTGCTTTGCAACATC
AGATTATCGTCATCACATAAATGATATTTACTGAACATCATATTTGATCATTACATTAATTGTAGTCCTTGTGGATTGGC
ATTCTAATTTATAGATTTGTCATGCCCAAGTTGTTGTTTAGTCAATGTATATTTTTCACTAAATGTTCTTGTCAACTGTA
TGGTTTCTTCAGACATTTCAACATGTTCTTTAAATAATAAGGTAGTGGTATTGTAAATTGAATAATTTATATTGGTGTTT
TTTCATCTGAACTTGCAAGTGTTATATAGCTTTTCACAGGAGCAGCGTTAAAGTAGTGGTATCGTAAATTGAATAATTTA
TATTGGTGGTTTGTTCATCTGAACTTGCAAGTGTTATATAGTTTTTCACAGGAGCAGCGTTAAAAGTTATGATAATATTG
TAATCATCTGAATTTTTCTGACTATGTATGCTTGCTCCAGAGATAAATCTTAACATTTCTTCCTAAACCCTTTTGCAGGA
TGATATGTTATCTTTAATGGATCCATGCCGAGGGCTTGTTCCGGAAGATAAAGTTTATTTTGAGGTCGATTTAAAGATCA
AGTGTGATGGAGGCATGATTAAAGATTTTAGCAAAGGTGTGGGAGTTTTTGATTGGATCCGGCTCTATCCAGGCAAGGAG
AGATTGACTTTCGGTGTATATAGTCATATAAGCACCGTGGAATTTTTATGTGAGCAAGTTTACAGTCCCGTGGAAGCTAC
CATTGCAATCAATATTTTGAAAGGGTCGTGCAGTATCTCAAGAGTAGTTGCTTCGACTCCTGGAAACTTTAAGGACCATA
TCATTCTATACGAAGCAGCATGCAGCCCGATAGTAATCGAAAGTGGTGGCTCTGTTCCTTTAACTCGTCGCGTGGTAGCT
GTCTCACTGGATCACAAGTTGGCGCTCTTCATTGTTGGTGGTGACGTGCTTGAACACCTTGCCCTCACTCTAGGTCATTC
TCATGAAGTGGTCAATCGGAGGATGGGTTGCGCCGAATTGGAGGTGAAAGTTGCTTGGACATCCGTCCCGGTAAGAGAGA
GACCTGATATGTTTAAGGTTGTCGGAA---ATACGCGGCTCTTGTTGTGAGAAGGTACGGCAGTGATGGATGT---ATAT
TAGTT-TTTGTGTAGTTGCCGCAGTACTCCCCCCTTCACAAGATTTAAGGCGTTA-------------------------
--------------------------------------------------------------------------------
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>SNPs
SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S----S---SS-S----------S-SSS-
------------S---------------S---S-----------S-----------------------S-----------
--------------------------------------S--S---SS-----------S----------------S----
--SSSSSSSSS-------------------------------S----------------------------S--------
--------------------------S-S-----------------S---S--------SSS---S--------------
---S-----SSS-----------------S----------S-----------------------S--------S-SS---
-------------------------S-------SS----------------------------SS-------S-------
----S-----------------------S-------------------------S-------------------------
-------------------------------------------------------------S--S---S--------S--
-SS---S------------------------S--S-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------S--------------------------------
------S-------------------------------------------S----S-------------SS-S-S-SSSS
--SSSSSSSSSSS-------------------------------------------------------------------
---S-S---------------S--SSS--SSSSS--------------S--S----------------------------
--------------------------------------S-----------------------------------------
---S--------------------------------------S-----------------------------S-------
-S-------------------------------------------------------S----------------------
--------------S-----------------------------------------------------------------
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-S---------------------------------------------------S--------------------------
-----------S--S-----------------------------------------------------------------
-------S----------------------------------------------S-------------------------
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------------S--------------------------------------------------------S----------
-------------------------S------------------------------------S-----------------
-----------------S-----------S----S-------S---S---S-----------------------------
----------------------S---------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------S-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------S----------------S----------------------------------------------
--------------------------------------------------------------------------------
------S-----------------------------S----------------------S--------------------
-------------------------------------------------------S-----------------------S
--------------------------------------------------------------------------------
-----S--------S-----------------------------------------------S-----------------
-----------------------------------------------------------------------S--------
--------------------------------------------------------------S-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------S------------------------S-S----S---------------
------------S------S-------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSS
>forward_793
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-----------------------------------------------------TGGGCAGATTGTGTGTGTGT-------
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>reverse_4696
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-------------------------------------------------------GCTCCCGGAAACTTCAAGGA-----
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>forward_1895
--------------------------------------------------------------------------------
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-----------------------------------GACCTGCCATATCCTCGACG-------------------------
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>reverse_5338
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---------------------------------------------------------AAAGGAAGCAAAGCAGCTGC---
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-------------
