>input_sequence_42303
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------A-------------TGGTCCTAGC
CTTTGACCTGGCCTTTGTCGTTCATCCGTCTCA----------------------------------T----TATCCTAG
-CCGTGAACCTCCCACCCCA--------CACCTCTCCAAAGCTCAAAACTGCTCCGCCGGCCAAATGGTCCCGCTTCGGC
GCCTTCCGGCGCTGCCGCTAACGCGTGGCTCCACGCGCCGCCGCCTCCTCGCCACCGGG---------GCCTCACCGCTC
CCATGGCCGGGCCTTCACACCTGGCGCCGGGCCCCTCCCAGCGACCTCCGCTCGTGGGGCCCCAGCGGCCCCTGCGCCCC
GAACACGGACGAGGCGGGCGCGCCAGAAGCCGGCGCCGGAGCCGGCCACGGCTCGTCGCTGGCCGAGATGGGCGCCCTCG
TGCTGTCCACCGCCGCCCCCCTCGGCAAGGCGCACCTCACCCACGCCGCCTTCTCCCGGTGGGCGGCAGGCGGGCTCCCC
GTGGGCCTTGCGCGGGCCCCCGACCACCCCGCCAGGCCGGAAAAGCCCCTCGCGGTAAATGCTCATCCACCATCCTCCTG
TTGCTCTCTTCGTCGAGGCATTTGATCGAGCAGGTTTGGCTGTGTGGTGCTCTTGCTGCTGCAGGTGACTCAGAAGGAGG
TCCCCACGCACAAGGCGATGGGGGTGCCGCTAAACGCGTACATGCTCCACAACCTGGCGCACGTGGAGCTCAATGCCATC
GACCTTGCCTGGGATACTGTGGTGCGGTTCTCGCCGCTCCGGGACACCCTGGGAGATGGCTT---------CTTTGCCGA
TTTTGCGCGTGTGGCCGACGACGAGAGCCGGCATTTTCGGTGGTATTCACAGCGGCTTGCCGAGCTTGGGTTCAGGTGAG
TGGCACAAAGAATGCGGCAGTGTGGATGTTGAATCGATGCGAAATCTCTGTCCACTGGTTGTTCTG--------CCTGTT
GTCAACTTGTCATACATTGGCGGTGATAGTTTCCTTTATGACCTATGTCAGATTGTTGTAAGTTTGTAACAGTTT-CTGT
GGACAGATATGGCGATATGCCTGTCCACAATCTTCTGTGGAGGGAGTGTGCAAAATCCTCAAGTGATGTTTCTGCACGGA
TGGCTGTTATACCTCTAGTACAGGTGCCAGATCATCTT-CTTCTCTGCGATACTGTAAAAAATACATTGTTTATGACCTG
CTCGGTTTGAACCATGAGTTTCCAAATCTTTTTAGATGACAGTAGTTGGTGAATAATTTTGATTTAC--TAGACTTGACC
GATATGTTGATGATTAGAACCTTAATAGGAAGCTAGAGGCCTTGATGCTGGACCAAGACTAGTCCAGAAGTTAATTGGCT
TTGCGGATCATAGATCTGCCGACATTGTGGCAAAAGTAGCAGAGGAAGAGCTTGCACATGTTTCTGTAGGTTTATATTGG
TTCCTGAAAGTATGCGAAATGATGGGCCGTGTCCCTGGTGCTGCTTTTAGAGGTTAGGCTGGTTCTTTATGATCCAC-TA
AATACAATTTCATGAAATTATGTTGATTAATGGATTGTTTCTCTGTAACATTCCAGACTTGATAAAGGAGCATGATGTTG
TAATGAGGGGTCCATTTAATTACCAATCTCGTGATGAAGCTGGTATACCTCGAGAATGGTAAGCTTTGACTATACTGTGA
CTATGAATCTAGAAGTATTGCATGTATATATGAATAGGTTATATTGTTGATGCTGTTATTCAGGTACGATGAGACGCTTA
AACCTGAAGTTGCAAGCAACCTTTCAGAGGTGAGGGACTATCTATTGTTTATCCAGTGTGTTTTGATGTATCTAACTTGT
GGCGTGTACCTCACAGGTGCATGATAGGCTAGCATGTGTTGTTGAGATGGAGAGAGAGAATGCTAGTTTGAATGGCTAA-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------
>chr3A_1_TraesCS3A01G140600
GCACAACAAAGTGCACCCCGTATTGTTATCTAAAATGTATCTAGCCCTAACTGCAGTCTATAGAATGATATAATTCTTAT
GGTCTAAAATGATGAACCTAACATCTCCAGTTTCCTTG-TGTTTGCAGATCTTAACGTCAGACAGAAGA---TGATAACC
TGTAAGTTCACCAAAGATTCTGGCATGATATT-GCCGACACGATTCAATGTTGCCGTCTGTAAATTTTGGTCATGTAGGG
AAGCCTAACAACCACTGCTGCTGCCCGTGTTGCTGTTAGGTCTTTTTAGCCTC---ATAGTGGATGCCGGAGATCACGCA
TGCATTTCATGCGTCTGTACCATTATTTGCAGTTATGTACCTATTGTAGAGTGCTGCGTTTACTTAGTCATTCGCTGGAA
GTTATCTGACAATTGGATAGAAGACACCTGCAAATTGGGCAAGTAAAGACAGCCGGTGAAGACCAGGAACCTGGAGACCT
CGCCCTGTTGTAAGATTGTAAAATTGTTATAGTTGGTTAATTTCTTTTGTTTTATTTTGGAACTAGCTAGTCTGTAATTT
ATGTTGGGTCGGAATAGGGCGGATAATTCATCTTTCCCATTGCTCTGATTGTTCTAAAGATCTCTACACGCTCGTTTGAG
CTGTAACATTAAACATT-----TTTTACCTCAATAATGGAGGCAATCTGGAGGTTCACTTGGCAGTAAAAAAGTACTCGT
AATTAGTACAGTCGTTTCACTTCTCAGTTCTCTAAACTTCACTGATGCTAGTGGTCAAGTGATCT-AGTAAATGGTTCTT
ACTTTTCTTGCTGGTGGTTCTTTGCATCTCTATCTCTCAACATTACCCGTTCAGGACCTGATCTCATGGTTCTCATTTGG
TGATTGTGCCCACACCGTAAAACATTCCAATTGTTTTTACTTTTATTTTTGAGGGGCTTCCATTTTTTTTCTACTTTGTG
TGGTGAATAAGCTGTGCTATGCAAACCAATTTT--TAGTTTTTCTCCCTGCAAAAAA-------------TGGTCCTAGC
CTTTGACCTGGCCTTTGTCGTTCATCCGTCTCA----------------------------------T----TATCCTAG
-CCGTGAACCTCCCACCCCA--------CACCTCTCCAAAGCTCAAAACTGCTCCGCCGGCCAAATGGTCCCGCTTCGGC
GCCTTCCGGCGCTGCCGCTAACGCGTGGCTCCACGCGCCGCCGCCTCCTCGCCACCGGG---------GCCTCACCGCTC
CCATGGCCGGGCCTTCACACCTGGCGCCGGGCCCCTCCCAGCGACCTCCGCTCGTGGGGCCCCAGCGGCCCCTGCGCCCC
GAACACGGACGAGGCGGGCGCGCCAGAAGCCGGCGCCGGAGCCGGCCACGGCTCGTCGCTGGCCGAGATGGGCGCCCTCG
TGCTGTCCACCGCCGCCCCCCTCGGCAAGGCGCACCTCACCCACGCCGCCTTCTCCCGGTGGGCGGCAGGCGGGCTCCCC
GTGGGCCTTGCGCGGGCCCCCGACCACCCCGCCAGGCCGGAAAAGCCCCTCGCGGTAAATGCTCATCCACCATCCTCCTG
TTGCTCTCTTCGTCGAGGCATTTGATCGAGCAGGTTTGGCTGTGTGGTGCTCTTGCTGCTGCAGGTGACTCAGAAGGAGG
TCCCCACGCACAAGGCGATGGGGGTGCCGCTAAACGCGTACATGCTCCACAACCTGGCGCACGTGGAGCTCAATGCCATC
GACCTTGCCTGGGATACTGTGGTGCGGTTCTCGCCGCTCCGGGACACCCTGGGAGATGGCTT---------CTTTGCCGA
TTTTGCGCGTGTGGCCGACGACGAGAGCCGGCATTTTCGGTGGTATTCACAGCGGCTTGCCGAGCTTGGGTTCAGGTGAG
TGGCACAAAGAATGCGGCAGTGTGGATGTTGAATCGATGCGAAATCTCTGTCCACTGGTTGTTCTG--------CCTGTT
GTCAACTTGTCATACATTGGCGGTGATAGTTTCCTTTATGACCTATGTCAGATTGTTGTAAGTTTGTAACAGTTT-CTGT
GGACAGATATGGCGATATGCCTGTCCACAATCTTCTGTGGAGGGAGTGTGCAAAATCCTCAAGTGATGTTTCTGCACGGA
TGGCTGTTATACCTCTAGTACAGGTGCCAGATCATCTT-CTTCTCTGCGATACTGTAAAAAATACATTGTTTATGACCTG
CTCGGTTTGAACCATGAGTTTCCAAATCTTTTTAGATGACAGTAGTTGGTGAATAATTTTGATTTAC--TAGACTTGACC
GATATGTTGATGATTAGAACCTTAATAGGAAGCTAGAGGCCTTGATGCTGGACCAAGACTAGTCCAGAAGTTAATTGGCT
TTGCGGATCATAGATCTGCCGACATTGTGGCAAAAGTAGCAGAGGAAGAGCTTGCACATGTTTCTGTAGGTTTATATTGG
TTCCTGAAAGTATGCGAAATGATGGGCCGTGTCCCTGGTGCTGCTTTTAGAGGTTAGGCTGGTTCTTTATGATCCAC-TA
AATACAATTTCATGAAATTATGTTGATTAATGGATTGTTTCTCTGTAACATTCCAGACTTGATAAAGGAGCATGATGTTG
TAATGAGGGGTCCATTTAATTACCAATCTCGTGATGAAGCTGGTATACCTCGAGAATGGTAAGCTTTGACTATACTGTGA
CTATGAATCTAGAAGTATTGCATGTATATATGAATAGGTTATATTGTTGATGCTGTTATTCAGGTACGATGAGACGCTTA
AACCTGAAGTTGCAAGCAACCTTTCAGAGGTGAGGGACTATCTATTGTTTATCCAGTGTGTTTTGATGTATCTAACTTGT
GGCGTGTACCTCACAGGTGCATGATAGGCTAGCATGTGTTGTTGAGATGGAGAGAGAGAATGCTAGTTTGAATGGCTAAG
-TCTCACATGACGAATACATGAGAGACTTGGTACGTACGACGCAGATATTCTAGCACACTGATACTTTTTTCTTGGTTTA
TTTTGATGCCAACCACCACCAAACTGCTTTCATCCCTT----------------------------------GTCTATAT
TCTACTTATTGGACCTTTCCAGTTTGACATACATGATCACATCTATTATGTCGTATTATCATTATGGAAA---------A
GATAAGA----TTTTTTTTTGTTATGCTAGTATGCATCAGCTGATTCAGCTATATGTGCACTTCGAATGATTGTAGGAAA
GAAAAACACCG-AGTGTTCAAGTTGTTGACAGTGGGGTCCTGCCTGCCAGTCGGCTTCACAAGCCAAGGATTAGGGACGC
ACAAAGTTTCCTTAGCCTCAAAGTTTTTGATGGGCAAG-CACCCATAATTAGGAATGCAAGTTGGGCAGGGGTACCCCCT
AAGCCATCCTAGTTATTTTGCT-------TCACAACTAACACGAGGATTATGGACAGCAATTAGCAGGAAATGAACCACC
AATTGAATGAAATGGATGGATGTATTGATTGACCCACCTGCATCA-CTTTGCCAGAATAGCCATCCTGATAAATTTACAG
TCTAGTATATACCTGCTCAAATGTCATGAACAAAAAGGACCTGAACATTCTTTTTTCTGCATGT--GTATAAGTGTATTC
CACAACACGCAAGGCCTCATGTA---------------------------------------------------------
---------GTTGGCTTCATTCTCAAATGGGACGCGCTTCTGGTGCCC------TTTGATCAGTTAACTAAAGTAAGAAA
GCATTTGCAGTAGGTAGCCCTCTATTT-TTTTCGGGGTAAAAATAGAAAGCATCGGCTCAATATCATTGCAGTGGTGTAA
ATTGGTGAATACCATCCAATGTAAGGATGGCATGTGGGGCCTGAGGCCACATGTTAGTGTCAATCCTGGACGCTATTCTC
TTGCGTGATCGAGCAATATTGCCCTTTAAAGTAAGCTTCTGGTACCAGGATGAACACAAATCCGGTTTGTTGTTTCCTTG
TCACGTACACTT
>chr3B_1
GCACAACAAAGTGCGTGTCGT-TTGTTATTTAAAATGTATCTAGCCCTATGTGCAGTCTTTAGATCGATAGAAATCTTAT
GGTCCAAAATGTTGAACCTAACATCTCCGATTTCCTTAATGTTTGCAGATCTTAACGTCAGACAGAAGATGATGATAACC
TGTAAGTTCACCAAAGATTCTGGCATGATATTTGCCGACACGATTCAATGTTGCCATCTGTAAATTTTGGTCATGTAGGG
AAGCCTAACGACAACTGCTGCTGTCCGTGTTGCTGTTTGGTCTTTTTAGCCTCAAAATAGTGGATGCCGGAGATCACGCA
TGCATTTCATGCGTCTGTACCATTATTTGCAGTTATGTAACTATTGTAGAGTGCTGCGTTTACTTAGTCATTCGCTGGAA
GTTATCTGACAATTGGATAGAAGACACCTGCAAATTGGGCAAGTAAAGACAGCCGGTGAAGACCAGGAACCTGGAGACCT
CACCCTGTTGTAAGATTGTAAAATTGTTATAGTTGGTTAATTCCTTTTGTTTTATTTTGGAACTAGCTAGTCTGTAATTT
ATGTTGCGTCGGAATAGCATGGATAATTCATTTTCCCCATTGCTCTGGTTGCTCTAAGCTGAAACTTTTTTTTTTTTTTT
TTTTGCGGGTGAAGCTGAAACATTTTACCTCAATGTGGG---------------------GGCAGTAGAAAAGTAGC---
-------ACAGTCGTTTTGCTTTTCTGAAGCCTACACGTCAGTGAA---------CAAGTGATCTGAGTAACTGGTTCTT
TACTGTTGG------------------------CTCTCAACAGTAACCGTCTAGGA--TGATCTCATGGTTCTGAGTTTG
TCTCCCCACA-------------ATTCCAATTGATTC-----------------------------------ACTTTATG
CGGTGAATAAGTGGTGCTATGCAACCCGGTTT---TAGTTTGTTTTCCTGCAAAATAGCCCAACTCACGGAGGACCTGGC
CTTTGACATGGCCTTTGTT---CATCCATCTCA----------------------------------TTATCTATCCTAG
-CCGTAAACCTCCCACACGCCACAACACCAC--CTCCAAAGCTCGAAACCGCTCCACCGGCCAAATGGTCCCGCTTGGGC
GCCTTCCGGCGCTGCCGCTAGCGCGTGGCTCCACGCGCCGCCGCCTCCTCGCCGCCGGGGCCTCTGCCGCCTCACCGCTC
CCATGGCCGGGCCTTCACACCTGGCGCCGGGCCCCTCCCAGCGACCTCCGCTCGTGGGGCCCCAACGGCCCCTGCGTCCC
GAACACGGACAAGGCGGGCGCGCCAGAAGCCGGCGCCGGAGTCGGCGACGGCTCGTCCTTGGCCGAGATGGGCGCCCTCG
TGCTGTCCACCGCCGACCCCCTCGCCAAGGCGCACCTCACCCACGCCGCCTTCTCCCGGTGGGCGGCAGGCGGGCTCCCC
GTGGGCCTCGCCCGGGCCCCGGACCACCCCGCCAGGCCGGAAAAGCCCCTCGCGGTAAATGCTCCATCCACCT-----TG
TTGCTCTCTTCGTCGAGGCATTTCATCGAGCAGGTTGGG-TGTGTGGTGCTCTTGCTGCTGCAGGTGACTCAGAAGGAGG
TCCCCACGCACAAGGCGATGGGGGTACCGCTAAACGCGTACATGCTCCACAACCTGGCGCATGTCGAGCTCAATGCGATC
GACCTTGCTTGGGACACTGTGGTGCGGTTCTCGCCGCTCCGGGACACCCTGGGAGATGGCTT---------C--------
-TTTGCGCGTGTGGCTGACGATGAGAGCCGGCATTTTCGGTGGTATTCACAGCGGCTTGCCGAGCTTGGCTTCAGGTGAG
CAGCAGAGAGAATGCGGAAGTGTGAATATTGAATTGATGCGAAATCTCTGTCCACTGATAGTTCTA--------CCTGTT
GTCTACTTGTCATATGTCATAGTTTTCTA-------TATGAGCTATGTCAGATTGTTGTAAATCTGTAACAGTTTTCTGT
GGGCAGATATGGTGATATGCCTGTCCACAATCTTCTGTGGAGGGAGTGTGCAAAATCCTCAAGTGATGTTTCTGCACGGA
TGGCAGTTATACCTCTAGTACAGGTGCCAGATCATCTTCCTTCTCTGTTGCACTGTCAAAAATACATTGTC-ATAACCTG
CTCAATTTGAACCATGAGTCTCCGAATCTTTTTAGATGACAGTATTTGGTGAAGAATTTCGATTTAGTAC--ACTTGACC
AATATGTTGATGATTAGAACCTTAATAGGAAGCTAGAGGCCTTGATGCTGGACCGAGACTAGTCCAAAAGTTAATTGGCT
TTGCGGACCATAGATCTGCAGACATTGTGGCAAAAGTAGCAGAGGAAGAGCTTGCACATGTTTCTGTAGGTTTATATTGG
TTTCTGAAAGTGTGCGAAATGATGGGCCGTGTCCCTGGTGCTGCTTTTAGAGGTTAGGTTGCTTCTTTATGATCCACCTA
AATACAATTTCATGAAATTATGTTGATTCATGGATTGT-TCTCTTTAACATCCCAGATCTGATAAAGGAGCATGATGTTG
TAATGAGGGGTCCATTTAACTATCAGTCTCGTGATGAAGCTGGTATACCTCGAGAATGGTAAGCTTTGACTAAACTGTGA
C--TGAATCTTGAAGTCTTGCGTGTATATATGAATAAGTCATA---TTGTTGATGTTTTTCAGGTATGATGAGATGCTTA
AACCTGAAGTTGCAAGCAACCTTTCAGAGGTGAGGGACCATTTATTGTTTATCCGGTGTGTTTTGATGTATCTAACTTGT
GGTATGTACCTCACAGGTGCATGATAGGCTAGCATGTGTTATTGAGATGGAGAAAGAGAATGCTAATTTGAATGGCTAAA
ATCTCACCTGACGAATACTTGAGAGACTTGGTAGGTACTACACAGATATTCTAGCACACTGATACCTTTTTCTTGGTTTA
TTTTGATGCCAACCGCCACCAAGCTGCTTACATCCCTGACTAACCTTGGTTAGGTTGGTCACCTTGTCCTTTGCCTATAT
TCTACTTATTGGACCTTTTTAATTTGATATGCATGATCACATCTATGA-------------------AAA---------A
GATAAGAAAC-TTTTTTTTTGTTATGCTAGTATGCATCAGCTGATTGAGCTATATGTGCACTTTGAATGATTGTAGGAAA
CAAACCTCACTAAGTGTTCAAGTTGTTGACAGTGGGGTCCTGCCTGCCAGTTGGCTTCACAAGCCAGGGATTAGGGACGC
ACAAAGTTTCCTTAGCCTCAAATTTTTTGATGGGCCAT-AACCCATAATTAGGA----AAGTTGGGCAGGGGTATCCCCT
GCCCCATCCTAGTTATTTTGCTTCACAAGTCACAACTAATACAAGGACTATGGACAGCAATTAGCAGGAAGTATACTACC
AATTGAATGAAATGGACGGATGTATTGATTGAGCCACTTTCATCCCCTTTGCCAGAATAGCGATCCTGAAAAAATTA--G
TCTAATATACACCTGGTCAAACGTCAAGGACAAAATGTACTTGTATATTCTTTTTTATGTATATACGC--------ATTC
CACAACACGCAACATGCAGACCTCATGTAGTAATTTTTTCTTATG-TTTTTTCTCAATATAGGTTTGAGTCTTC------
------------------------------------------------------------------ACTAAAGTAAGAAA
GCATTTGCAGTAGGAAACTCTCCTAATGTTTTCGTGGTAAAAATAGAAAGCATTAGCTCAATACCAT-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------
>chr3D_1
GCACAACAAAGTGCATGCGGT-TTGTTATCTAAAATGTATCTAGCCCTGTGTGCAGTCTTTAGAATGATAGAAATCTTAT
GGTCCAAAATGATGAACCTAACATCTCCTGTTTCCTTAC-GTTTGCAGATCTTAACGTCAGACAGAAGATGATGATAACC
TGTAAGTTCACCAAAGATTCTGGCATGATATTTGCCGACACGATTCAATGTTGCCGTCTGTAAATTTTGGTCATGTAGGG
AAGCCTAACAACAACTGCTGCTGTCCGTGTTGCTGTTAGGTCTTTTTAGCCTC---ATAGTGGATGCCGGAGATCACGCA
TGCATTTCATGCGTCTGTACCATTATTTGCAGTTATGTAACTATTGTAGAGCGCTGCGTTTACTTAGTCATTCGCTGGAA
GTTATCTGACAATTGGATAGAAGACACCTGCAAATTGGGCAAGTAAAGACAGCCGGTGAAGACCAGGAACCTGGAGACCT
CGCCCTGTTGTAAGATTGTAAAATTGTTATAGGTG-------------GTTTTATTTTGGAACTAGCTAGTCTGTAATTT
ATGTTGTGTCGGAATAGCATGGATAATTCA-TTTCCCCATTGCTCTGGTTGCTCTAAGCTGAAAC---------------
---------------------ATTTTACCCCAATGTGGA---------------------GGCAGTAGAAAAGTAGC---
-------ACAATCGTTTTGCTTTTCTGAAGATGGGGCAGGGGC-------------------------------------
------------------------------------------------------GACCTGATCTCATGATTCTGAGTTTG
TCTCCCCACA-------------TTTCCAATTGGTTTCACTTTA-------------------------------TTATG
CGGTGAATAAGTTGTGCTATGCAAATCCGTTTTACTAGTTTGTTTCCCTGCAAAATGGTCCGACTGACAGTGGACCTCGC
CTTTGACCTGGCCTTTTTTGTGGCCATCTCATCGGCTGGACGCGTTGACGTGTGCATAGCAGCGTTGT----TATCCTAG
CCCGTAAACCTCCCACACCA--------CAC--CTCCAAAGCTCGAAACTGCTCCACCGGCCAAATGGTCCCGCTTGGGC
GCCTTCCGGCGCTGCCGCTAGCGCGTGGCTCCACGCGCCGCCGCCTCCTCGCCGCCGGGGCCTTCGCCGCCTCACCGCTC
CCATGGCCGGGCCTTCACACCTGGCGCCGGGCCCCTCCCAGCGACCTCCGCTCGTGGGGCCCCAACGGGCCCTGCGCCCC
GAACACTGACAAAGCGGGACCTCCAGAAGCCGCCGCCGGAGTTGGCCACGGCTCGTCCTTGGCCGAGATGGGCGCCCTCG
TGCTGTCCACCGCCGACCCCCTCGCCAAGGCGCACCTCACCCACGCCGCCTTCTCCCGGTGGGCGGCAGGCGGGCTCCCC
GTGGGCCTCGCCCGGGCCCCGGACCACCCCGCCAGGCCGGAAAAGCCCCTCGCGGTAAATGCTCCATCCACCT-----TG
TTGCTCTCTTCGTCGAGGCATTTCATCGAGCAAGTTGGG-CGTGTGGTGCTCTTGCTGCTGCAGGTGACTCAGAAGGAGG
TCCCCACGCACAAGGCGATGGGGGTGCCGCTAAACGCGTACATGCTCCACAACCTGGCGCACGTCGAGCTCAATGCCATC
GACCTTGCTTGGGATACTGTGGTGCGGTTCTCGCCGCTCCGGGACACCCTGGGAGATGGCTTCTTTGCGGAC--------
-TTTGCGCGTGTGGCTGACGATGAGAGCCGGCATTTTCGGTGGTATTCACAGCGGCTTGCCGAGCTTGGGTTCAGGTGAG
T-GCCCGAAGAACGCGGCAGTGTGAATATTGAATTGATGTGAAATCTCTGTCCACTGATAGTTCTGCCTGTTGTCCTGTT
GTCTACTTGTCATATGTCATAGTTTTCTG-------TATGAGCTATGTCAGATTGTTGTAAATCTGTAACAGTTTT-TGT
GGACAGATATGGTGATATGCCTGTCCACAATCTTTTGTGGAGGGAGTGTGCAAAATCCGCAAGTGATGTTTCTGCACGGA
TGGCAGTTATACCTCTAGTACAGGTGCCAGATCCTCTTCCTTCTCTGTTACACTGTCAAAAAGACATTGTC-ATAACCTG
CTCAATTTGAACCATGAGTCTCCGAATCTTTTTAGATGACAGTATTTGGTGAAGAATTTCGATTTAGTATATACTTGACG
AATATGTTGATGATTAGAACCTTAATAGGAAGCTAGAGGCCTTGATGCTGGACCAAGACTAGTCCAAAAGTTAATTGGCT
TTGCGGACCATAGATCTGCAGACATTGTGGCAAAAGTAGCAGAGGAAGAGCTTGCACATGTTTCTGTAGGTTTATATTGG
TTCCTGAAAGTATGCGAAATGATGGGCCGTGTCCCTGGTGCTGCTTTTAGAGGTTAGGTTGGTTCTTTATGATCCA-CTA
AATACAATCTCATGAAATTATGTTGATTCATGGATTGT-TCTCTTTAACATCCCAGATCTGATAAAGGAGCATGATGTTG
TAATGAGGGGTCCATTTAACTATCAGTCTCGTGATGAAGCTGGTATACCTCGAGAATGGTAAGCTTTAACTAAACTGTGA
C--TGAATCTTGAAGTATTGCATGTATATATGAATAAGTCGTA---TTGTTGATGTTTTTCAGGTATGACGAGGCGCTTA
AACCTGAAGTTGCAAGCAATCTTTCAGAGGTGAGGGACCATTTATTGTTTATCCGGTGTGTTTTGATGTATCTAACTTGT
GGTATGTACCTCACAGGTGCATGATAGGCTAGCATGTGTTGTTGAGATGGAGAAAGAGAATGCTAGTTTGAATGGCTAAA
ATCTCACCTGATGAATACTTGAGAGACTTGGTAGGTACTACACAGATATTCTAGCACACTGATACCTTTTTCTTGGTTTA
TTTTGATGCTAACCACCACCAAGCTGCTTACATCCCTGACTAACCTTGGTTAGGTTGGTCACCTTGTCCTTCGTCTATAT
TCTACTTATTGGACCTTTTCAATTTGACATGCATGATCACATCTATTATGTCGCATTATCATTATGGAAATTATGGAAAA
GATAAGAAACTTTTTCTTTTGTTATGCTAGTATGCATCAGCTGATTGAGCTATATGTGCACTTTGAATGATTGTAGGAAA
AAAAACTCACTAAGTGTTCAAGTTGTTGACAGTGGG-TCCTGCCTGCCAGTTGGCTTCACAAGCCAGGGATTAGGGACGC
ACAAAGTTTCCTTAGCCTCAAAGTTTTTGATGGGCTACAAACCCATAATTAGGAATGCAAGTTGGGCAGGGGTATCCCCT
GCCCCATCCTAGTTATTTTGCT-------TCACAACTAATACAAGGACTATGGACAACAATTAGCAGGAAGTAAACCACC
AATTGAATGAAATGGATGGATGCATTGATTCAGCCACTTTCATCCCCTTTGCCAGAATAGCGATCCTGAAAAAATTACAG
TCTAATATACACCTGCTCAAACATCAAGGACAAAATGTACCTGCATATTCTTTTTTATGTATGT--GC--------ATTC
CACAACACGCAACATGCAGACCTCATGTAGTAATTTTTCCTTATTTTTTTTACTCAATATAAGTTTGAATCTTCACTGAA
GTTTCATTTGTTGGCTTCGTTCTCAAATGGGACGTGCATCTTTTGCCCTTATATTTTGATCGGTTAACTAAAGTAAGAAA
GCATTTGCAGTAGGAAACTCTCCTAATGTTTTCGCGGTAAAAATAGAAAGCATTAGCTCAATACCAT-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------
>SNPs
---------------SS----S---------------------------SS--------S----------S--S------
----S-----------------------S--------S------------------------------------------
--------------------------------------------------------------------------------
------------S----------S--------------------------------------------------------
---------------------------------------S----------------------------------------
--------------------------------------------------------------------------------
------------------------------------------S-------------------------------------
------S----------SSS-----------S--S------------S---S-----SSSSSSSSSSSSSS-SS---SSS
S-S-SSSSS-S--SS-S-----------------SSS--SSSSSSSSSSSSSSSSSSSSS-------S-------SSSSS
SSSSSSS----------SS---S--S-SSSS---S--S---S---SSSSSSSSSS----------------S--------
SSS-S-SSSSSSSSSSSSSSSSSSSSSSSSSSS---------S--S----SS---------------------S-S--S-
-SSSSSSS-SSSSSSSSSSSSSS----------S---S-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S--
S----------S---------------SS------------S-S-----------S-----------------S---S--
------------------S--S-----S----------------------------------------------------
-----S----------S--------------SS-----------S----------S--------------------S---
--------------------S--------------------------------S--------------------------
----------------------------------------------------------------S---------------
----------S------------------------------S---------------SS---------------------
---------------S--------S-------------------------------------------------------
--------S--S--------S-------------------------------------------SSS-SS-S-SSSSS--
-----------------------S------------S--S----------------------------------------
----------------------------------------------------------------S---------------
--------S---------------------------------------------------------------SSSSSSSS
S--------------S-----S----------------------------------------------------------
-S----------------------S--S------S----------------------S-S--------------------
---S----------SS-SSSS-S-SSSS-SSSSSSS-----S-------------------S-S----------------
------------S-------------------------------------------------------------------
----S------------------------------------------SS-S-----S-------------SS--S-----
---SS--------------S---S--------------------S--------S-----S------S----S--------
S-----------------------------------------------------------------S-------------
-------S-----------S------------------------------------------------------------
----------------------------------------------------------S---------------------
----------------------------S---------S-----S------S-----SS---------------------
-------------------S--S--S----------------------------------------------S-------
-SS-------S-------------------------S--S---SSS---S--S----S--------S-------------
--------------------------------------S--S------------S-------------------------
--SS-------------------------------------------------S-------------------------S
-------S----------S--------------S----S--S-----------------------S--------------
----------------------S------S-------S------------------------------------------
------------------S--S--------S----------------------S--------------------------
----------------------------------------------S----------------S----------------
S----SSSS-S----------------------------------------S--------------S-------------
-----------------------------------S-S-S----------------------------------S-----
SSS------------------------------------S--S----S----------------------S-S-------
--------------------------------S----S-S----S----------------S-------S---S------
----S----S-----------S----S-S------S-S-----S-S----------S--S-------SSSSSSSSS----
------------SSSSSSSSSSS---------------------------------------------------------
------------------S---------------S--S---SS------------------S------------------
--------------S-S-S---SSSS--------S------------------SS--------S---SSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSS
>forward_22
--ACAACAAAGTGCACCCCGTA----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------
>reverse_1596
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------TCCTG
TTGCTCTCTTCGTCG-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------
>forward_1062
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--TTGACCTGGCCTTTGTCGTT----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------
>reverse_1955
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------CGATGCGAAATCTCTGTCCAC-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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------------
>forward_1922
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------AGCTTGGGTTCAGGTGAG
TG------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------
>reverse_3996
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------------------------------------------TTCTC
TTGCGTGATCGAGCA-----------------------------------------------------------------
------------
