>input_sequence_42271
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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------------------------------------------------GCACGCGACGCGAGCTTCCTTCTTCCCCAAAA
TCCTCCGTCCCGGCCGCCGCCTCCCCCAAAATCCAATCCTTTGCCGCCCTTCTCCAGCTCCATTCCC---------TTTG
CTCCCAGCAGATCCGCCACCCAGCGCGAGGACCCTGGGCGTGGCCATGAAGATGAAGGAGGGGGGCGACTGGAGCAGCGA
GTGGCGGCGGCCGCACGGCAGCGCCAAGTTG-------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------GGTGGCCTATCCATGGTCCCTGAATGGGATTCGCTTCCACCGGA
GCTTGTCCAAGCGGTCGCCGACCGCGTCCTCTCCGCCACCGGCGGCGTCGACGCGTACATGGACATGAGGGCCGTCTGCT
CAACCTGGCGCTCTGCCGTCGCCAAGTCATCTCCTTTCGCCGCGGTCGCCGGCCTCCGTTTCCGCCCGCGCCACTGGGTC
ATGCTCGACCTGCAACCCGACGACCTCAATGACGAG------GCTCGCCTCTTCCTCCACGTCCCCACCGGCCGCTTCCG
CCGCCTGCACCTCCCGGCGCTCCGCGACAACCTCGTCGCCGGTGCTGCCGACGGTCTCCTCGTGCTCGCGGACATGTATC
CGCCGCACTTGGCTCGTGTCCTCAACCCATTTACAGGTGACATGCTCCACTTCCCCGCGGCGTTACCTCGGCATTTTACC
TTTACCTCGGTGATGAAGGGAGGCTCTCATCCGACGCTGGTCTTGC----TGAGATGGGGCTCGGTGTTCTGTGCTGCCC
CAAACAGCGATCTCTTTACACAGACAGAGGAGGCCGTTGAATCCTACTTGGTGAGCATTGCTAACTTCCAGGGCGACGTC
TATTGTGCCGATGGCCGTGGATGTGTATTCAAGTTGGTCGCACTCGCACCAGCAGCAGACCAGTGTGATGATGATGATGA
TGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATG
ATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGAT
GATGATGATGATGATGATGCCGCGGCGCCGCCGGATGTGCACGTATATACACAAGAGGGAGATGA------TGATACAAA
AGAGGGAGATGATCACAGCGAAATGCCTTCTTATCTTGTGGAGTCTGCTGGGGAACTGCTGCTCGTTTGCTCCGTTGATC
AAACTTTGAAAGTTTTCAGAGTCAACGTCGAGCACAAGTTGTTGGAGGAGGTCAAGAGCCTCGGCGGCCGCACCTTGTTC
CTCGGCCAAGAGAGGTGTGTGTCTGTCGATGCAGCGAAGCTTCCTTCCGTTGACGGAGATTGCATATACATGTTAGATTT
TGAAAACGCGCCCATGTCAGATTCTGAAAGCGTGTCCATGTCAGATTCTGAAGACATGTCCGTGTCAGATTCTAGAGACA
AG------ATATGCGTGTATAACCTAAGAGGCGACGTGGTGGACATTATCTCCAGCAAGGACTTTTGTGCTCGACCTTTC
AGCCTTGTCCAGGTTCTCCTGCGGTACTGTGATGTCCTTCCCAAATTGTAAAGGGTGTGAAAATAAACCTGTGCTGGCCT
TGCTGCTACTGCCTCATGCCACTGTGAGTAGTAGATTAAGTAGTAGGTTTTCCCATATTGGAACAGTTTTATGTACTATT
TTGCTTATCTCCTTCATCTTATGTATTCTTGCATCGCTCGACTGATGTTGTTTATCAGCTGTTCATTAACCCTTATTCCA
GTCCGT-------GTTCTGACAATGGGTGTGTTGTACTCATAGTATAACCTTGAGTGTCTGGTTACATCTTTAATGTACC
CGTCGAATCAAAATTTCTCAATATC-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------
>chr3D_1_TraesCS3D01G494300
GAAAAGAAGAAAAAAATCGAAATTCTAAAC-TTTTTTTATTTTTGAATATTTTTGGGAACATCTGGGAATTTTCAAACAT
TTTCTAAAAATTAACGAACATAATTTGGAATTATATACTTTAATATAATTTCTGAAACAAATTTTAAACAGG--ATTTTT
TTTGAAAAAATGATGAAATATTTAAAATTGCGAACATTTTTAAAATATATGAACATCCG---------------------
--------------------------------------------GTTTACTTTTTTTCGTTTTCATGTTTTTTGA----T
TTTCTTTTTCAAACAATGCCCGTGCTTATATAAATTTGTTCAAATTTTCAAAAAATGATCACTTTTTCAAATTTTGATAA
TAAAACAAAAATGTTCGCATTTCAA-AAATTGTACAAAATTTCAATGAAACGTTTGTGTCTTTCAAAATTGCTTGGAATG
TCAAAACACGAT----TTTTTTTAAAGAGCGACCGAATTTTGAACACGAACATTTTTT-AAAACCCTAAAAAGTTTGGAA
GTCTAAACAAAAAAGTGAGAAAAATAAGAACAACAATTGGGAACCATACTTTTTACCAAATTTCCCCAAATATTGTTTGT
ATTTTTGTAGAAAAAACACCATGCTCAACGTAGCGTGTCCGGGTAGGCAAGAAGGCTCCATTTGAGAGCACATTGTTTGT
CAACATCTCTCAAATGATCCTAATTTTTTTATTTGATTGTATGACCAACTCAACGCATCATGCCAAGTTGTTTTGTTTTC
CACAAATTTTGCGTTTGCTAGAGTATTCTCGTTAAAAAAAGAGATAAATGGCCGGACGTGCCGCAGCTTTCTTAAACTTT
TTTATAAGTTGCTCCAAAATTAATGAATATGCATTTGATTTTCTTAAACTGAAATCAGGGGGAGGTTCCTGAGAATCTAT
CTAAAAAAACTAAAGTTGGAAGTTCATGGCAGAACTGTAAGTTTATTCAGTGATGAAACTAGAGGGCAGTCGGA-----G
ACGAGGCCCAAGCCCAAGCAAGCCGACCCTAAGCCATTCGCTC-----GCACGCGACGCGAGCTTCCTTCTTCCCCAAAA
TCCTCCGTCCCGGCCGCCGCCTCCCCCAAAATCCAATCCTTTGCCGCCCTTCTCCAGCTCCATTCCC---------TTTG
CTCCCAGCAGATCCGCCACCCAGCGCGAGGACCCTGGGCGTGGCCATGAAGATGAAGGAGGGGGGCGACTGGAGCAGCGA
GTGGCGGCGGCCGCACGGCAGCGCCAAGTTG-------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------GGTGGCCTATCCATGGTCCCTGAATGGGATTCGCTTCCACCGGA
GCTTGTCCAAGCGGTCGCCGACCGCGTCCTCTCCGCCACCGGCGGCGTCGACGCGTACATGGACATGAGGGCCGTCTGCT
CAACCTGGCGCTCTGCCGTCGCCAAGTCATCTCCTTTCGCCGCGGTCGCCGGCCTCCGTTTCCGCCCGCGCCACTGGGTC
ATGCTCGACCTGCAACCCGACGACCTCAATGACGAG------GCTCGCCTCTTCCTCCACGTCCCCACCGGCCGCTTCCG
CCGCCTGCACCTCCCGGCGCTCCGCGACAACCTCGTCGCCGGTGCTGCCGACGGTCTCCTCGTGCTCGCGGACATGTATC
CGCCGCACTTGGCTCGTGTCCTCAACCCATTTACAGGTGACATGCTCCACTTCCCCGCGGCGTTACCTCGGCATTTTACC
TTTACCTCGGTGATGAAGGGAGGCTCTCATCCGACGCTGGTCTTGC----TGAGATGGGGCTCGGTGTTCTGTGCTGCCC
CAAACAGCGATCTCTTTACACAGACAGAGGAGGCCGTTGAATCCTACTTGGTGAGCATTGCTAACTTCCAGGGCGACGTC
TATTGTGCCGATGGCCGTGGATGTGTATTCAAGTTGGTCGCACTCGCACCAGCAGCAGACCAGTGTGATGATGATGATGA
TGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATG
ATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGAT
GATGATGATGATGATGATGCCGCGGCGCCGCCGGATGTGCACGTATATACACAAGAGGGAGATGA------TGATACAAA
AGAGGGAGATGATCACAGCGAAATGCCTTCTTATCTTGTGGAGTCTGCTGGGGAACTGCTGCTCGTTTGCTCCGTTGATC
AAACTTTGAAAGTTTTCAGAGTCAACGTCGAGCACAAGTTGTTGGAGGAGGTCAAGAGCCTCGGCGGCCGCACCTTGTTC
CTCGGCCAAGAGAGGTGTGTGTCTGTCGATGCAGCGAAGCTTCCTTCCGTTGACGGAGATTGCATATACATGTTAGATTT
TGAAAACGCGCCCATGTCAGATTCTGAAAGCGTGTCCATGTCAGATTCTGAAGACATGTCCGTGTCAGATTCTAGAGACA
AG------ATATGCGTGTATAACCTAAGAGGCGACGTGGTGGACATTATCTCCAGCAAGGACTTTTGTGCTCGACCTTTC
AGCCTTGTCCAGGTTCTCCTGCGGTACTGTGATGTCCTTCCCAAATTGTAAAGGGTGTGAAAATAAACCTGTGCTGGCCT
TGCTGCTACTGCCTCATGCCACTGTGAGTAGTAGATTAAGTAGTAGGTTTTCCCATATTGGAACAGTTTTATGTACTATT
TTGCTTATCTCCTTCATCTTATGTATTCTTGCATCGCTCGACTGATGTTGTTTATCAGCTGTTCATTAACCCTTATTCCA
GTCCGT-------GTTCTGACAATGGGTGTGTTGTACTCATAGTATAACCTTGAGTGTCTGGTTACATCTTTAATGTACC
CGTCGAATCAAAATTTCTCAATATCTAGGAACTGACTTTCAATCCGGTTATACAGTGGTTAACGGGAAAAAAT----AAT
CTGCTTATGCAGTATTTCACCAAAACAAGTAGTACCAGGTTCCGAGTTAACCTGAATGATAAGAACCCGGTTTCAATCAT
AAGAACAGTAAACAGTTTTAGGCTCGAATTGAAGTGACCGCATTATCAAGGGAAGTTTGTCAGGCTACAAGAGGATGGAC
GCAGGTGGTTCTTCCACCGGAGCTCTAAAGATTGGGGCATGCGTGCTGCTG----------CCTCTTTTCCTGCCTGTAG
CTTTGTTCTTATAGGAACTAGGGCAGTGGCCCTCGTAATTGCAAAGGGAATCGCTTAAGTGTGTCTAACAGGTATGAACA
ATAAGCTTCTGGTTTCATAGTGCATATTAGACCATTAGAAATTGTTGATAGCCATTGAAAATGTTACATTTGGGTTGCAA
ACCTATGTATCCGGCATTTTGAAATTTAATTCAGAATTGGTCCATATAATTTAGTCAAATCTGGATTTTTTTTTCTGACC
AAAATTGAATTTTGTTTGAATCTAGGAGATTATAAACCAAAGAAACAGGGTGAGCGCAGCTGCCAAGCGGGGAAGGAGAT
TGCTTCCGAAAATTTTATCTAAATCGTTGTGAAATATAGAGAACGCAGGGGCATTGGAGTGAGAGTGGGGATATATTAGT
AATGGGGGTGTGACTGATATCAAGAGTTGACAGTGGATA-----------------------------TTGAATGAAGAA
CATCAGCAGGCAAAGATGGAATGGGAAGCTGAATCGGTGGAAGAAATATTACAGTCATCTAAGCCAGGAGTAGGAGATTA
AGTAAGTATTCTTTCATACGCCTTTATCCATACGGCTTGATGTGCAGCAGCTGTGTTCATGAATGCTTGTTTTAGTCAGT
CAGTTATCTGACAATGTACGCTTGTTGCAAGCTTCTGAATTATTTTCTGTACGGACTTTCCAATCCTTAAATCTCAGTCC
TTTCTTCTGTACTGCAATGCTAGTAATT
>chr3B_1
GAAAAGAAGCAAAAAAATCGAAGCTATATTTTTTTTTGTTTTTTGAATATTTTTGGAAATATTTGGGAATTTTCAAACAT
TTTCTAAAAATAAAAGAACATCGA----AATTATAAACTTTAATATAATTTCTGAACCAAATTCTAAAACAGGAATATTT
TTGGAAAAAATGATAATTT-TTTAAAATTGCGAATATTTTTAGAATATAAGAACATCTGTTAGAAACAAAAAAACTTGAA
AAATAGAACTGAAAATATACCCCTCAGCGACTGGTTTACTGTTTGTTTGTTTTGTTTCTCTTTCATGTTTTTTCTTTTTT
TTTCTTTTTCAAACAATGCCCGCACTTATATATATTTTTTCAAAATTTCAAGAAATGTTCATGTTTTCAATTTTT--TTA
ATAAACATAAGTGCTCGCATTTTAACAAATTGTACAAAATCTCAATAAAATGTTTGTGTCTTTCAAAACTGCTTGGAATG
TCAAAACATGAACATGTTTTTTAAAAGAGTGGCCGAATTTTGAACACGTACATTTTTTAAAAACACTAACAAATCTGGAA
TTCCAAACAAAAAAGTGAGAAAAATAAGAACAATAAATTGGAACCAATTTCC-----------CCCCAGATATTGTTTGT
ATTTGTGTAGAAAAAACACGATGTTCAACGTAGAGTGTCTGGGTAGGCAAGAAGGCTCCATTTGAGAGCATGTTGTTTCT
CAACATCTCTCAAATGATCCTAAT--------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------TTTTACC
TTTACCTCGGTA---AAGGGAGGCTCTCATCCAACGCTGGTCTTGCATGCTGAGATGGGGCTCGATGTGCTCTGCTGCCC
CAAACAGCGATTTCTTTACACATACA------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------AGATTCTAGAGACA
AG------ATGTGCGTGTATAACCTAAGAGGTGACGTGGTGGACATTATCTCCAGCAAGGACTTTTGTGCTCGCCCTTTC
AGCCTTGTCCAGGTTCTCCTGCGGTACTGTGATGTCCTTCCCAAATTGTAAAGGTTGTCAAAATAAACCTGTGCTGGCCT
TGCTGCTACTGCCTCATGCCACTGTGAGTAGTA------------GGTTTTCCCATATTGGAACAGTTTTATATACTATT
TTGCTCATCTCCTTCATCTTATGTATTCTTGCATCGCTCGACTGATGTTGTTTATCACCTGTTCATTAACCTTTATTTCA
GTCCGT-------GTTCTGACAATGGGTGTGTTGTACTCATAGTATTACCTTGAGTGTCTGCTTACATCTTTAATGTACC
CAACGAATCAAAATTTCTCAGTATCTAGGAACTGACTTTCAATCCGGTTATACGGTGGTTAACGGGAAAAATTAAAGAAT
CTGCTTATGCAGTATTTCACCAAAACAAGTAGTACCAGGTTCCGAGTTAATCTGAACAATAAGAAGCCGGTTTCAATCAT
AAGAACAGTAAACAGTTTTAGGCTCGAATTGAAGTGACCGCATTATCAAGTGAAGTTTGTCAGGCCACAAGAGGATGGAC
GCACGTGGTTCTTCCGCCGGAGCTCTAAAGATTGGGGCA----------TG----------CCTCTTTTCCTGCCTGTAG
CTTTGTTCTTATAGGAACTAGGGCAGTGGCCCTCGTAGTTGCAAAGGGAATCGCTTAAGTGTGTCTAACAGGTATGAAGA
ATAAGCTTGTGGTTTCATAGCGCATATTAGACCACTAGAAACTGTTGACAGCCATTGAAAATGTCACATTTGGGTTGCAA
ACCTTTGTATCCGGCATTTTGAAATTTAATTCAGAATTGGTCCGTATAATTTAGTCAAATCTGGATTTTTTTTTCTGACC
AAAATTGAATTTTGTTTGAATCTAGGAGATTATAAACCAAAGAAACAGGGTGAGTGCAGCTGCCAAGCGGGGAAGGAGAT
TGCCCAGACTTGTTGCTGGAGCCTGGAGGCAGCGGCCAAGCTTGCGTCGGCAAAGAAAGAAATCGACACAAAAGATGTTA
CGATGCGACAGGAGGTGTCACAACCTGGCAGGATGCAGCGTATTTGTCGTAGTCGCTAGATGTTTAACTCGATGAAAGAT
CCTCAACAGAAACAGAGTGAAGGTT-------------------------------------------------------
----------------------------------GCTTGATGTGCAGCGGCTGTGTTCATGAATGCTTGTTTTA----GT
CAGTTATCTGACAATGTACGCTTGTTGCAAGCTTCTGAATTATTTTCTGTACTGACTTCCCAATCCTTAAATCTCAGTCC
TTTCTTCTGTATTGCAATGCTAGTAAT-
>chr7D_917
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------------------------CTGTAAGTTTATTGAGTGTTAAAAACCGATAGAAAGGGCATCTGGG
ACGAGGCCCAAGCCCAACCAAGCCGACCCTAAGCCATTTCCTCCAAAAGCACGCGACGCGAGCTTCCTTCTTCCCCCAAA
TCCTCCCGGCCGCCTCCCTTCTCCCCCAAAATCCA-----TTGCCGCCCTTCTCCAGCTCCATTCCCCCATACAAGTTTG
CTCCCAGAAGATCCGCCGCCCAGCACCGATCCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGTGGCCTATCCATCATCCCGGAATGGAATTCGCTTCCAACGGA
GCTTGTCCAAGTTGTCGCCGACCGCGTCCTCTCGACCACCGGCGGCGTCGACGCGTACATGGACATGAGGGCCGTCTGCT
CAACCTGGCGCTCTGCCATCGCCAAGCCATCTCCGCTCGCCGCGGTAGCTGGCCTCCGTTTCCGCCCACGCCACTGGGTC
ATGCTGGACCTGCAACCCGACGACCGCAACGACGACGATGACGCTCGCCTCTTCCTCCACGTCCCCACCGGGCGCATCCG
CCGCCTGCACCTCCCGGTGCTCCGCGACAACTTCGTCGCCGGTGCTACTGACGGTCTCCTCGTGCGCGGGGACATGTATC
CACCGCACTTGGCTCGTGTCCTCAACCCCTTTACAGGTGACATGCTCCACTTCCCCGCGGCGTTACCTCGACATTTTAAG
CATACCTCGGTG---AAGGGAGGCTCTCATTCAACGCTGGTCTTGC----TGAGATGGGGCTCGGTGGTCTGTGCTGCCC
CGAACAGCGATTTCTTTACAGAGACAGAGGAGGCCGTTGAAACGTACCTGGTGAGCATTGTTAACTACCAAGGCGACGTC
TATTGTGCCGATGCGCGTGGATGTGTATTCAAGTTGG------TCGCACCAGCAGCAGACCAGTGTGATGATGATGAGCT
CCTGGTCATACCCGAGGTGT------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------CGCCGCCGGGTGTGGACGTATATGCAGAAGAGGGAGATGATGATGATGATACAAA
AGAGGGAGATGATGGCAGCGAAATGCCTTCTTATCTCGTGGAGTCTGCTGGGGAACTGTTGCTTGTTCGCTATGTGGATG
AAACTTTGAAAGTTTTCAGAGTCGACGTCGAGCACAAGTTGTTGGAAGAGGTCAAGAGCCTCGGCGGCCGCACGTTGTTC
CTCGGCCAAGAGAGGTGTGTCTCTGTGGATGCAGCTAAGCTTCCGTCTGTTGACGGAGATTGCATATACATGTTAGATTT
TGAAAACGTGTCCATGTCAGATTCTGAAGACATGTCCATGTCAGATTCTGAAGACATGCCCATTTTAGATTCTGGAGACA
AGTGCGACATGTGCGTGTATAACCTAAGAGGTGACATGGTGGATATTATCTACAGCAAGGACTTTCGTGCTCGACCTTTT
AGCCTTGTTCAGGTTCTCTTGTGGTACTGCGATGTCCTTCCCAAATTGTAGAGGTTGTGAAAATAAACCTGTTCTGGCCT
TGCTGCTAGTGCCTCGTGCCACTGTGAGTAGTAGATTAAGTAGTAGGGTTTTCCATGTTGGAACAGTTTTATGTACTATT
TTGATTATCTCCTTCATATTATATA---TTGCATCGCTCGACTGATGCTATTTATCAGCTATTCATTAATCCTTATTTCA
GTCCGTGTTCTTAGTTCTGACAATAGGTGTGTTGTACTCATGGTATGACCTTGCGTGTCTGGTTACATCTTTAATGTACC
CATCGAAT--------------ATCTAGGAACTTACTGCTGGTGGAGGA----------------------------AAT
CTGCTTATGCAGTATTTCATCAAAACAAGTAGTACCATG-TTCGAGTTAATCTGAATGATATGAACCT-GTTTCAATCAT
AAGAACAGTAAACAGTTTTAGGCTC-AATTGAAGTGACTGCATTATTAAGTGAAGTTTTTCAGGCTATAAGATGGACACC
---GGTGGTTCGTCCACTGGAGCTCTAAAGATTGGGGCA----------TGCGTGCTGCTACCTCTTTTCCTGCCTGTTG
CTTTGTTCTTATGGGAACTAGGGCAGTGGCTATCGTAGTTGCAAAGGGAAAGGCTTAAGTGTGTCTAACAGGTATGAAAA
ATAAACTTGTGGTTTCATAGTGCATATTAGACCACTAGAAATTGTTCACAGCCATTGAAAATATTACATTTGGGTTGCAA
ACCTTTGTATCCGGCATTTTAAAATTTAATTCAGAATTGATCCATATAATTTAATGAAATCTGGATTTTTTTTT---ACC
AAATTTGAATTTTGTTTGAA-CTAGGAGATTACTAGAAC-----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------
>SNPs
---------S------SSSS--SSSSS-SS-------SS-----------------S--S--S-----------------
-----------S--S------SSSSSSS-------S--------------------S------S----SSS-----S---
--S-----------S-SS-S--------------S-------S------S-------S----------------------
------------------------------------------------SS---S----SS-------------SS-----
----------------------SS--------S----S------S------S-----S---SS-------S----SS-S-
SS-----S--S--S--------S-----------------S-----S---S-----------------S-----------
--------S--S----------S------S-S----------------S---------------S----S--S-S-----
S--S-----------------------------S--S-S-------SSS-SSSSSSSSSSSSS-----S-----------
----S--------------S---S---------S-----S------------------------------SS------S-
------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------S----S-S---SSS--SS-S-SSS-S-------
-----------------S--------------------SS------------------------------------S---
------SSS---S-SS--SS---------------SSSSS----------------------------------------
-------S---------S------S-SSSSS-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------SS----S------S-----------S----
-----------SS--------------------SS---------------------------------------------
-----------------S--------S-------SS----------S--S-----------------S------------
-----S-------------------S---S-----S-----------------------------------S---S----
-----------------S-------------S--------------S-S----------------S--S-----------
-S--------------------------S-----------------------------------------S---------
------------SSS-----------------S-----------------------------------------------
-----------S-----------------------------S-S---S------------S-----S---S---------
-------------SS----------------------SSSSSS----------------------------------SSS
SSSS-SSSSSSSS--S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSS---------S----S--------S--S----------------------------
-------------SS---------------------S---------------------S----S---S---SS--S---S
-----------------------S----------------------S--------------------------S------
--------------------S-----S--------S--------S--S--------------------------------
--------S-S-----------------SS-S--------------------------S--S-S-S--------------
----------S--------------------S------------------------------------------------
------------------------------------------------------S-------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------S--
----------------------------------------------S---------------------------------
-S------------------S--------------------------------S-----------------S--------
--------------------------------------------------S-----------------------------
--------------------------------------------------S-----------------------------
---------------------------------------SSSSSSSSSS-------------------------------
-------------------------------------S----------------------------------------S-
--------S-------------------------S-------------S-------------------------------
----S---------------------------------------------------------------------------
------------------------------------------------------S-------------------------
---SSSSSSSSS--SSSSSSSSS-S-SS-SSSSSSSS-SSSSSSSSSS--SS-SSSS--SS-SS-SSSSS-S-S--SSSS
SSSS-S-SSSS--SSSS-SS---SSSSSS-SSS--S-SS------------------------------S--SSS----S
-S---S---SS-S---SS---S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------S-------------------------SSSS--
----------------------------------------------------S-----S---------------------
-----------S---------------S
>forward_1079
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------AAGCCGACCCTAAGCCATTC-----------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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----------------------------
>reverse_2874
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------CTTGTTC
CTCGGCCAAGAGA-------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------
>forward_2800
--------------------------------------------------------------------------------
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------------------------------------------------------------GCTCGTTTGCTCCGTTGATC
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------
>reverse_4349
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------CATACGGCTTGATGTGCAGC--------------------------------
--------------------------------------------------------------------------------
----------------------------
