>input_sequence_42100
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---------------------ATGAAGCGCGAGTACCAGGACGCCGGCGGGAGCGG---TGGCGGGGGCGGCATGGGCTC
GTCTGAGGACAAGATGATGGT------GTCGGCGGCGGCGGGGGAGGGGGAGGAGGTGGACGAGCTGCTGGCGGCGCTCG
GGTACAAGGTGCGGGCCTCCGACATGGCGGACGTGGCGCAGAAGCTGGAGCAGCTGGAGATGGCCATGGGGATGGGCGGC
GTGGGCGCCGGCGCCGCCCCCGACGACAGCTTCGCCACCCACCTCGCCACGGACACCGTGCACTACAACCCCACCGACCT
CTCCTCCTGGGTCGAGAGCATGCTGTCGGAGCTCAACGCGCCGCCGCCGCCCCTCCCGCCCGCCCCGCAGCAGCTCAACG
CCTCCACCTCCTCCACCGTCACGGGC---GGTGGGTACTTCGATCTCCCGCCCTCGGTTGACTCCTCCTGCAGCACCTAC
GCCCTGCGGCCGATCCCCTCCCCGGCCGGCGCCGTCGGGCCGGCCGACCTGTCCGCCGACTCCGT---GCGGGACCCCAA
GCGGATGCGCACTGGCGGGAGCAGCACCTCGTCGTCGTCATCCTCCTCGTCCTCTCTCGGTGGG---GGCGCCAGGAGCT
CTGTGGTGGAGGCTGCTCCGCCGGT------CGCGGCCGGGGCCAACG---CGCCCGCGCTGCCGGTCGTCGTGGTCGAC
ACGCAGGAGGCCGGGATTCGGCTGGTGCACGCGCTGCTGGCCTGCGCGGAGGCCGTGCAGCAGGAGAACTTCTCTGCCGC
GGAGGCGCTGGTGAAGCAGATACCCTTGCTGGCCGCGTCCCAGGGCGGCGCGATGCGCAAGGTCGCCGCCTACTTCGGCG
AGGCCCTCGCCCGCCGCGTCTTCCGCTTCCGCCCGCAGCCGGACAGCTCCCTCCTCGACGCCGCCTTCGCCGACCTCCTC
CACGCGCACTTCTACGAGTCCTGCCCCTACCTCAAGTTCGCCCACTTCACCGCCAACCAGGCCATCCTGGAGGCCTTCGC
CGGCTGCCGCCGCGTGCACGTCGTCGACTTCGGCATCAAGCAGGGGATGCAGTGGCCCGCCCTCCTCCAGGCCCTCGCGC
TCCGTCCCGGCGGCCCTCCCTCGTTCCGCCTCACCGGCGTCGGCCCCCCGCAGCCGGACGAGACCGACGCCTTGCAGCAG
GTGGGCTGGAAGCTCGCCCAGTTCGCGCACACCATCCGCGTCGACTTCCAGTACCGCGGCCTCGTCGCCGCCACGCTCGC
GGACCTGGAGCCATTCATGCTGCAGCCGGAGGGC---GAGGAGGACCCGAACGAGGAGCCCGAGGTAATCGCCG--TCAA
CTCGGTCTTCGAGATGCACCGGCTGCTCGCGCAGCCCGGCGCCCTGGAGAAGGTCCTGGGCACCGTGCGCGCCGTGCGGC
CGAGGATCGTCACCGTGGTGGAGCAGGAGGCCAACCACAACTCCGGCACATTCCTGGACCGCTTCACCGAGTCT------
-----------------------------CTGCACTACTACTCCACCATGTTCGATTCCCTCGAGGGCGGCAGCTC---C
GGCGGCCCATCCGAAGTCTCATCGGGGGCT-GCCGCTGCTCCTGCCGCCGCCGGCACGGACCAGGTCATGTCCGAGGTGT
ACCTCGGCCGGCAGATCTGCAACGTGGTGGCCTGCGAGGGGGCGGAGCGCACAGAGCGCCACGAGACGCTGGGGCAGTGG
CGGAACCGGCTGGGCAACGCCGGGTTCGAGACCGTGCACCTGGGCTCCAATGCCTACAAGCAGGCGAGCACGCTGCTGGC
CCTATTCGCCGGCGGCGACGGGTACAAGGTGGAGGAGAAGGAGGGCTGCCTGACTCTCGGGTGGCACACGCGCCCGCTGA
TCGCCACCTCGGCATGGCGCCTGGCCGCGCCGTGA---------------------------------------------
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------------------------------------------------------------------
>chr4A_1_TraesCS4A01G271000
AATATTGACCATCCCTATGGCTTGACCCGTATCATAACCGTGTGTCGCATTAGCTATGTACGTGTCATGCGAGACAAAAT
CATGTAGATAGGTCAAAATGTTGGTTGTTAGATTCGGTCATCGATAGACAAGTTAGGGCATCTTTGATTCACATGATTCT
AGAAACACATGAAATGAAAAGATTGCAAAGTTACGCCCATTTGAATCATGCACGGTTTTTGGTTTGGTTGCATCGCCGGA
AAAACGTGGATCCTTTTCATGAGGTTTTCAGTGGACACTAGAATTCCT-TGGAATGAATAC-AAATGAATCCTTGGCAAA
TATTTGTGTTGGATTCAATCCTACAAACTAAACGACCAGCACGGAAAAAGAATCCCCAAGGATTAAAAGA-CTCCTTCGA
TTCAAAGAGGCCCTCAACAGTGCAATAC-------CTTCAAAGTCTTGGAATCCATTTTTCCCATGAGCACTGCAAGCCA
CAGAGAGGGCCACACGGCCGCAGCGCACGGAGAAGGAGTCAGACGTAGC--------------AGAGCCCCCATCCCGCA
TAGCA--TTTTTATTTAATTTGCGGGGATTTCTGGGGTGGTGGGCGCAAGATTTGTAACTGGATGGCGAAGTTTGTCTGG
TGATAAAGATGGGCGCGACGAATCCGTCCATCGATCCAACGCTGTGCGCGTGTTGGCCCGGGGCCCCGCCCGCCAGCGAC
CCACCACTCCACCCAGACCCAGATGCCTT-CCCCCTC------CCATCACCCGATGCCGTCTCGCAATCTCCCCCCTCCC
CTTCCCCTACAACTACTACTACTCGCTCCCGCTGCCGCTCGCTCGCTCGCTCGCTGCTTTG-------------------
---------CTCTCTCTCCTTCTTCTTCCTCCTTCTTCCTCCCCCACCCCCCGCCCCCCGACCCTGGATCCAAATCCCGA
CCCTCCCCAGAACCGGAACCGAGGCAAGCAAAAGCTTGGCGCAATTATTGGCCGGAGATAGGTAGAGAAGCGAGGCAGCT
CGCTCGCGGTGAGGCGAGATCATGAAGCGCGAGTACCAGGACGCCGGCGGGAGCGG---TGGCGGGGGCGGCATGGGCTC
GTCTGAGGACAAGATGATGGT------GTCGGCGGCGGCGGGGGAGGGGGAGGAGGTGGACGAGCTGCTGGCGGCGCTCG
GGTACAAGGTGCGGGCCTCCGACATGGCGGACGTGGCGCAGAAGCTGGAGCAGCTGGAGATGGCCATGGGGATGGGCGGC
GTGGGCGCCGGCGCCGCCCCCGACGACAGCTTCGCCACCCACCTCGCCACGGACACCGTGCACTACAACCCCACCGACCT
CTCCTCCTGGGTCGAGAGCATGCTGTCGGAGCTCAACGCGCCGCCGCCGCCCCTCCCGCCCGCCCCGCAGCAGCTCAACG
CCTCCACCTCCTCCACCGTCACGGGC---GGTGGGTACTTCGATCTCCCGCCCTCGGTTGACTCCTCCTGCAGCACCTAC
GCCCTGCGGCCGATCCCCTCCCCGGCCGGCGCCGTCGGGCCGGCCGACCTGTCCGCCGACTCCGT---GCGGGACCCCAA
GCGGATGCGCACTGGCGGGAGCAGCACCTCGTCGTCGTCATCCTCCTCGTCCTCTCTCGGTGGG---GGCGCCAGGAGCT
CTGTGGTGGAGGCTGCTCCGCCGGT------CGCGGCCGGGGCCAACG---CGCCCGCGCTGCCGGTCGTCGTGGTCGAC
ACGCAGGAGGCCGGGATTCGGCTGGTGCACGCGCTGCTGGCCTGCGCGGAGGCCGTGCAGCAGGAGAACTTCTCTGCCGC
GGAGGCGCTGGTGAAGCAGATACCCTTGCTGGCCGCGTCCCAGGGCGGCGCGATGCGCAAGGTCGCCGCCTACTTCGGCG
AGGCCCTCGCCCGCCGCGTCTTCCGCTTCCGCCCGCAGCCGGACAGCTCCCTCCTCGACGCCGCCTTCGCCGACCTCCTC
CACGCGCACTTCTACGAGTCCTGCCCCTACCTCAAGTTCGCCCACTTCACCGCCAACCAGGCCATCCTGGAGGCCTTCGC
CGGCTGCCGCCGCGTGCACGTCGTCGACTTCGGCATCAAGCAGGGGATGCAGTGGCCCGCCCTCCTCCAGGCCCTCGCGC
TCCGTCCCGGCGGCCCTCCCTCGTTCCGCCTCACCGGCGTCGGCCCCCCGCAGCCGGACGAGACCGACGCCTTGCAGCAG
GTGGGCTGGAAGCTCGCCCAGTTCGCGCACACCATCCGCGTCGACTTCCAGTACCGCGGCCTCGTCGCCGCCACGCTCGC
GGACCTGGAGCCATTCATGCTGCAGCCGGAGGGC---GAGGAGGACCCGAACGAGGAGCCCGAGGTAATCGCCG--TCAA
CTCGGTCTTCGAGATGCACCGGCTGCTCGCGCAGCCCGGCGCCCTGGAGAAGGTCCTGGGCACCGTGCGCGCCGTGCGGC
CGAGGATCGTCACCGTGGTGGAGCAGGAGGCCAACCACAACTCCGGCACATTCCTGGACCGCTTCACCGAGTCT------
-----------------------------CTGCACTACTACTCCACCATGTTCGATTCCCTCGAGGGCGGCAGCTC---C
GGCGGCCCATCCGAAGTCTCATCGGGGGCT-GCCGCTGCTCCTGCCGCCGCCGGCACGGACCAGGTCATGTCCGAGGTGT
ACCTCGGCCGGCAGATCTGCAACGTGGTGGCCTGCGAGGGGGCGGAGCGCACAGAGCGCCACGAGACGCTGGGGCAGTGG
CGGAACCGGCTGGGCAACGCCGGGTTCGAGACCGTGCACCTGGGCTCCAATGCCTACAAGCAGGCGAGCACGCTGCTGGC
CCTATTCGCCGGCGGCGACGGGTACAAGGTGGAGGAGAAGGAGGGCTGCCTGACTCTCGGGTGGCACACGCGCCCGCTGA
TCGCCACCTCGGCATGGCGCCTGGCCGCGCCGTGA--TCGCGAGTTTTGAACGCTGTAAGTACACATCGTGAGCATGGAG
GACAACACAACCCCGGCGGCCGCCCCGGCTCTCCGGCGCACGCACGCACGCACCTCT-----GAAGAAGAAG---CTAAA
TGTCATGTCAGTAAACGCTGAATTGCAGCGACCGGCTACGATCGACGGGGCTACGGGTGGTTCCGTCCGTCCGGCGTGAA
GAGGTGGACGGACGACGAACTCCGAGCCGACCA--CC---GGCATGTAGTAATGTAATCGCTTCTTCGTTCCCAGTTCTC
CCGCACCTCCATGATCACCCGTAAAACTCCTCCTAAGCCCCATTAT---------TACTACTACTACTATTATGTTTAAA
TGTCTATTATTGCTACTGTATGTGTAATTCCTCCAATCGCTCATATCAAAATAAGCGCGGGCCGGACTTTGTTAGCAGCT
CCTATGAGAATGAA------TTTTGTACGCAAGCCACATCCAAAATTGGGCTGACCTTTGTTCTGTTCCGTTCTTGATCA
GTGGTATAAGCTTGTATGTTCATGGCGTTCACTGCTCTTATGAACATGATGG---------------CTTTGCAATTGCT
GACCGTCTGACTTGGGGACTTGGTGGTGTGCCATGGGAAGAGATTCACATCACGGATTAGATTAGCCTGCCTTTGCCGTC
TTTGAGAGCTTGCCGAACGAAGTTTCCCGATCTAGGAATTGCTGCAAATGATGCGGCGTGTTGGAAACATCTCGTGTAGT
TTCCCCTGCTGTGCCGGGCTGGCTGTGCGGTCACCCCGCCGCTGGCTGTTTCTC-ATCTAAAAATGAACCTGCACGTTAG
TTGGAGAGGCGCATCACCT----------------CCCACCAATCGGTCAAGGGTTCGGCCCTGCTGCCGTAGCAATCAG
TTGATC-AAGCCGAATACTGTTTCTGTACAACGGCC---CGTCTGAATGCCGCACGGCCACAGCAATCAGTTCCATGATC
ACAGCTTTACACT-----GCACCAACCACTGCTGATCGGTGCTGCGAAGCCATAACAAAAGATACT
>chr4D_9
--------CCAACCCTATGGCTTGCCCCGTATCATAACCGTGTGTCGCATTAGCTATGTATGTGTCATGTGAGACAAAAT
CGAAGGTAGGAG---AAATGTTGGTTGTTGGATTTGATCATCGGTAGACAAGTTAGGGCATCTTCGATTCACATGATTCT
AGAAACACATGAAGTAAAAAGATTGCAAAGCTATGCCCATTTGAATCATGCACGGTTTTTGGTTTCGTTGCATCGCCGGA
AAAACATGGATTGTTTTTAGGAGTTTTTGAGTGGATGCTAGATTCCTTATGGAATGAATACAAAATGAATCCTTGGTAAA
TATTCGTGCTGGATTCGATCCTACAAACTAAACGGTCAACATGGAAAAAAAT--CCCAAGGATTAAAAAGGCTCCTTCGA
TTCAAAGAGGCCCTCAACAGTGCAATACACAGATGCTTCAAAGTTTTGGAATCCATTTTG-CCATGAGCGCTGCAAGCCA
CAGAGAGGGCCACACGGCCGCAGCGCACAGAGAGGGAGTC-GACGTAGC--------------AGAGCCCCATCACCCGC
AGCATTTT-----TTTAATTAGTGGGGATTTCTGGGGTGGTGGGCGCAAGATTTGTAACTGGATGGCGAAGTTTGTCTGG
TGATAAAGATGGGCGCGACGAATCCGTCCATCGATCCAACGCTGTGCGCGTGTCTGGCCGGGGCCCCGCCCGCCAGCGAC
CCACCACTATGCCCCG-CCCAGATGCCTTCCCCCCTC------CCATCACCCGATGCCGTC-------------------
-------TACAACTACTACTACTCGCTCCCGCTGCCGCTCGCTCGCTGCTCTGCTCGCTCGTTCTCCTCCCAGTTCCCAC
CCCAACCATCTCCATCTCCTCCTTCTTCCTCCTCTCCCA--------CCCCCGCCCCCCGACCCTGGATCCAAATCCCGA
CCCGCCCCAGAACCGGAACCGAGGCAAGCAAAAGCTTCGCGCAATTATTGGCCAGAGATAGATAGAGAGGCGAGGTAGCT
CGCG-------------GATCATGAAGCGGGAGTACCAGGACGCCGGAGGGAGCGGCGGCGGCGGTGGCGGCATGGGCTC
GTCCGAGGACAAGATGATGGT------GTCGGCGGCGGCGGGGGAGGGGGAGGAGGTGGACGAGCTGCTGGCGGCGCTCG
GGTACAAGGTGCGCGCCTCCGACATGGCGGACGTGGCGCAGAAGCTGGAGCAGCTCGAGATGGCCATGGGGATGGGCGGC
GTGGGCGCCGGCGCCGCCCCCGACGACAGCTTCGCCACCCACCTCGCCACGGACACCGTGCACTACAACCCCACCGACCT
GTCGTCTTGGGTCGAGAGCATGCTGTCGGAGCTCAACGCGCCGCCGCCGCCCCTCCCGCCCGCCCC---GCAGCTCAACG
CCTCCACCTCCTCCACCGTCACGGGCAGCGGCGGCTACTTCGATCTCCCGCCCTCCGTCGACTCCTCCAGCAGCATCTAC
GCGCTGCGGCCGATCCCCTCCCCGGCCGGCGCGACGGCGCCGGCCGACCTGTCCGCCGACTCCGT---GCGGGATCCCAA
GCGGATGCGCACTGGCGGGAGCAGCACCTCGTCGTCATCCTCCTCCTCGTCGTCTCTCGGTGGG---GGCGCCAGGAGCT
CTGTGGTGGAGGCTGCCCCGCCGGT------CGCGGCCGCGGCCAACGCGACGCCCGCGCTGCCGGTCGTCGTGGTCGAC
ACGCAGGAGGCCGGGATTCGGCTGGTGCACGCGCTGCTGGCGTGCGCGGAGGCCGTGCAGCAGGAGAACCTCTCCGCCGC
GGAGGCGCTGGTGAAGCAGATACCCTTGCTGGCCGCGTCCCAGGGCGGCGCGATGCGCAAGGTCGCCGCCTACTTCGGCG
AGGCCCTCGCCCGCCGCGTCTTCCGCTTCCGCCCGCAGCCGGACAGCTCCCTCCTCGACGCCGCCTTCGCCGACCTCCTC
CACGCGCACTTCTACGAGTCCTGCCCCTACCTCAAGTTCGCGCACTTCACCGCCAACCAGGCCATCCTGGAGGCGTTCGC
CGGCTGCCGCCGCGTGCACGTCGTCGACTTCGGCATCAAGCAGGGGATGCAGTGGCCCGCACTTCTCCAGGCCCTCGCCC
TCCGTCCCGGCGGCCCTCCCTCGTTCCGCCTCACCGGCGTCGGCCCCCCGCAGCCGGACGAGACCGACGCCCTGCAGCAG
GTGGGCTGGAAGCTCGCCCAGTTCGCGCACACCATCCGCGTCGACTTCCAGTACCGCGGCCTCGTCGCCGCCACGCTCGC
GGACCTGGAGCCGTTCATGCTGCAGCCGGAGGGC---GAGGAGGACCCGAACGAGGAGCCCGAGGTAATCGCCG--TCAA
CTCAGTCTTCGAGATGCACCGGCTGCTCGCGCAGCCCGGCGCCCTGGAGAAGGTCCTGGGCACCGTGCGCGCCGTGCGGC
CCAGGATCGTCACCGTGGTGGAGCAGGAGGCGAATCACAACTCCGGCACATTCCTGGACCGCTTCACCGAGTCT------
-----------------------------CTGCACTACTACTCCACCATGTTCGATTCCCTCGAGGGCGGCAGCTCCGGC
GGCGGCCCATCCGAAGTCTCATCGGGGGCT-GCTGCTGCTCCTGCCGCCGCCGGCACGGACCAGGTCATGTCCGAGGTGT
ACCTCGGCCGGCAGATCTGCAACGTGGTGGCCTGCGAGGGGGCGGAGCGCACAGAGCGCCACGAGACGCTGGGCCAGTGG
CGGAACCGGCTGGGCAACGCCGGGTTCGAGACCGTCCACCTGGGCTCCAATGCCTACAAGCAGGCGAGCACGCTGCTGGC
GCTCTTCGCCGGCGGCGACGGCTACAAGGTGGAGGAGAAGGAAGGCTGCCTGACGCTGGGGTGGCACACGCGCCCGCTGA
TCGCCACCTCGGCATGGCGCCTGGCCGGGCCGTGATCTCGCGAGTTTTGAACGCTGTAAGTACACATCGTGAGCATGGAG
GACAACACAGCCCCGGCGGCCGCCCCGGCTCTCCGGCGAACGCACGCACGCACGCACTTGAAGAAGAAGAAG---CTAAA
TGTCATGTCAGTGAGCGCTGAATTGCAGCGACCGGCTACGATCGATCGGGCTACGGGTGGTTCCGTCCGTCTGGCGTGAA
GAGGTGGATGGACGACGAACTCCGAGCCGACCA--CCACCGGCATGTAGTAATGTAATCCCTTCTTCGTTCCCAGTTCTC
CACCGCCTCCATGATCACCCGTAAAACTCCTAAGCC------------------CTATTATTACTACTATTATGTTTAAA
TGTCTATTATTGCTA-----TGTGTAATTCCTCCAACCGCTCATATCAAAATAAGCACGGGCCGGACTTTGTTAGCAGCT
CCAATGAGAATGAA-ATGAATTTTGTACGCAAGGCACGTCCAAAACTGGGCTGAGCTTTGTTCTGTTCTGT---------
--------------TATGTTCATGGTGCTCACTGCTCTGATGAACATGATGGTGCCTCCAATGGTGGCTTTGCAATTGTT
GAACGTTTGGCTTGGGGACTTGGTGGTGGTGCATGGGATGAGATTCACATCACGGATTAGATTAGCCATCCGTTGCCGTC
TTTGAGAGCTTGCCGAACGAAGTTTCCCGATCTAGGAGTTGCTGCAAATGATGCGGCTTGTTGGAAAGATCTCGTGTAGT
TTCCCCTGGGGTGCCCGGCTGGGTGTGTGGTCACCCCGCCGCTGGCTGTTTCC-GATCTAAAAATGAACCTGCACGTTAG
TTGGAGAGAGGGGC------------GCATCACCACCCACCAATCGGTCAAGGGTTCGGCCCTGCTGCCGTAGCAATCAG
TTGATC-AAACCGAATACTGTTTCTGCACAACGGCCGGCCGTCTGAATGCCGCACAGCCATAGCAATCAGTTGGATGATC
AAAGCCAAAGCTTTTGCCGCACCAACCACTGCTGATCGGTGCTCCGAAGCCGTAACGGAAAGA---
>chr4B_307
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--------------------------------------------------------------------ATCCTTGGTAAA
TATTCGTGCTGGATTCAATCCTACAAACTAAACGACCAGCACGGAAAAGAAT--CCC-----------------------
----------------------------------------AAGTCTTGGAATCCATTTTG-CCAT---------AAGCCA
CAGGGAGGGCCACACGGCCGCAGCGCACGGAGAGGGAGAGGGAGAGGGAGTCTGACGCAGCAGAGAGCCCCATCACCCGC
AGCGTTTTTTTTCTCTAATTTGCGGGGATTTCTGGGGTGGTGGGCTCAGGATTTGTAACTGGATGGCGAAGTTTGTCTGG
TGATAAAGACGCGCGCGACGAATCCGTCCATCGATCCAACGCTGTGCGCGTGT-TGGCCCGGGCCCCGCCCGCCAGCGAC
CCACCACTGTGCCCCG-CCCAGATGCCTTCCCCCCCCTCCCATCCATCGCCCGATGCCGTC-------------------
-------TACAACTACTA-----------CGCTGCCGCTCCCTCGCTGCTCTGCTCGCTCTCCTCCCTC------CCCAC
CCCAACCATCCCCGTCTCCTCCTCCTTCCTCCTCT-------------------CCCCCGACCCTGGATCCAAATCCCGG
CCCGCCCCAGAGCCGGAATCGAGGCAAGCAAAAGCTT-----------------GAGATAGATAGAGAGGCGAGGTAGGG
AGGCGA----GAGGCGAGATCATGAAGCGCGAGTACCAGGACGCCGGAGGGAGCGGCGGTGGCGGGGGAGGCATGGGCTC
GTCCGAGGACAAGATGATGGTGTCGGGGTCGGCGGCGGCGGGGGAGGGGGAGGAGGTGGACGAGCTGCTGGCGGCGCTCG
GGTACAAGGTGCGGGCGTCCGACATGGCGGACGTGGCGCAGAAGCTGGAGCAGCTGGAGATGGCCATGGGGATGGGCGGC
GTGGGCGCCGGCGCCGCGCCCGACGACAGCTTCGCCACCCACCTCGCCACGGACACCGTGCACTACAACCCCACCGACCT
CTCCTCCTGGGTCGAGAGCATGCTGTCGGAGCTCAACGCGCCGCCGCCGCCCCTCCCGCCCGCCCC---GCAGCTCAACG
CCTCCACCTCCTCCACCGTCACCG---GCGGCGGGTACTTCGATCTCCCGCCCTCCGTCGACTCCTCCTGCAGCACCTAC
GCGCTGCGGCCGATCCCGTCCCCGGCCG------TCGCGCCGGCCGACCTCTCCGCCGACTCCGTCGTGCGGGATCCCAA
GCGGATGCGCACTGGCGGCAGCAGCACC---TCGTCGTCATCCTCATCGTCCTCTCTCGGCGGTGGCGGCGCCAGGAGCT
CTGTGGTGGAGGCTGCCCCGCCGGTGGCCGCCGCGGCCGGT------G---CGCCCGCGCTGCCGGTCGTCGTGGTCGAC
ACGCAGGAGGCCGGGATTCGGCTGGTGCACGCGCTGCTGGCGTGCGCAGAGGCCGTGCAGCAGGAGAACTTCTCTGCCGC
GGAGGCGCTGGTGAAGCAGATACCCTTGCTGGCCGCGTCCCAGGGCGGCGCCATGCGCAAGGTCGCCGCCTACTTCGGCG
AGGCCCTCGCCCGCCGCGTCTTCCGCTTCCGCCCGCAGCCGGACAGCTCCCTCCTCGACGCCGCCTTCGCCGACCTCCTC
CACGCGCACTTCTACGAGTCCTGCCCCTACCTCAAGTTCGCCCACTTCACCGCCAACCAGGCCATCCTGGAGGCGTTCGC
CGGCTGCCGCCGCGTGCACGTCGTCGACTTCGGCATCAAGCAGGGGATGCAGTGGCCCGCCCTTCTCCAGGCCCTGGCGC
TCCGTCCCGGCGGCCCTCCCTCGTTCCGCCTCACCGGCGTCGGCCCCCCGCAGCCGGACGAGACCGACGCCTTGCAGCAG
GTGGGCTGGAAGCTCGCCCAGTTCGCGCACACCATCCGCGTCGACTTCCAGTACCGCGGCCTCGTCGCCGCCACGCTCGC
GGACCTGGAGCCGTTCATGCTGCAGCCGGAGGGC---GAGGAGGACCCGAACGAGGAGCCCGAGGTAATCGCCG--TCAA
CTCGGTCTTCGAGATGCACCGGCTGCTCGCGCAGCCCGGCGCCCTGGAGAAGGTCCTGGGCACCGTGCGCGCCGTGCGGC
CGAGGATCGTCACCGTGGTGGAGCAGGAGGCGAACCACAACTCCGGCACATTCCTGGACCGCTTCACCGAGTCC------
-----------------------------CTGCACTACTACTCCACCATGTTCGATTCTCTGGAGGGCGGCAGCTC---C
GGCGGCCCATCCGAAGTCTCATCTGGGGCG-GCTGCTGCTCCTGCCGCCGCCGGCACGGACCAGGTCATGTCCGAGGTGT
ACCTCGGCCGGCAGATCTGCAACGTGGTGGCCTGCGAGGGGGCGGAGCGCACAGAGCGGCACGAGACCCTGGGGCAGTGG
CGGAACCGCCTCGGCAACGCCGGGTTCGAGACCGTCCACCTGGGCTCCAATGCCTACAAGCAGGCGAGCACGCTGCTGGC
GCTCTTCGCAGGCGGCGACGGGTACAAGGTGGAGGAGAAGGAGGGCTGCCTGACGCTGGGGTGGCACACGCGCCCGCTGA
TCGCCACCTCCGCATGGCGCCTGGCCGCGCCGTGA--CCGCGAGTTTTGAACGCTGTAAGTACACATCGTGAGCATGGAG
GACGACACAACCCCGGCGGCCGCCCCGGCTCTCCGGCGCACGCACGCACGCACGCTCTTGAAGAAGAAGAAGAAGCTAAA
TGTCATGTCAGTGAACGCTGAATTGCAGCGGCCGGCCACGATCGAC---------------------CGTCCGGCGTGAA
GAGACGGAC-GACGACGAACTCCGAGCCGACCATCCCACCGGCATGTAGTAATGTAATCCCTTCTTCGTCCCCAGTTCTC
CACCGCCTCCATGATCACCCGTAAAACTCCCAAGCCCTACTACTACTACTACTACTACTACTACTACTATCATGTTTAAA
TGTCTATTATTGCAA-----TGTGTAATTCCTCCAATCGCTCATATCAAAATAAGCGCGGGCCGGACTTTGTTAGCTGCT
CCAATGAGAATGAAAATGAATTTTGTACGCAACGCACGTCCGAAACTGAGCCGAGCTCTGTTCTGTTCTTG---------
---------------ATGTTCATGGTGTCTTTGGTGATCAACTTAG----------------------------------
------------------------------------------------------------------CTTCCTTTGCCGTG
TTTGAGGGCTTGCCGAAGGAAGTTTCCCGATCTAGGAGTTGCTGCAAATGATGCGGCGTGTTGGAAAGATCTCGTGTAGT
TTCCCCCTGC-----------GGTGTGTGGTCACCCCGCCGCTGGCTGTTTCCTGATCTAAAAATGAACCTGCACGTTAG
TTGGAGAGGGGGGCGCATCAGCATCAGCATCACCACCGATCGGC----CAAGGCTTCGGCCCTGCTGCCGGAGCAATCAG
TTGATCAAAACCGAATACTGTTTCTGCACAAC------------------------------------------------
------------------------------------------------------------------
>chr4A_1882
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-------------------------------------------------CCTCCTTGACACCGGCTTCCCTGGCCTCCTC
CACGCGCACTTCTACGAGTCAGGCCCCTACCTCAAGTTCGCACACTTGACCGCGAACCAAGCCATCCTGGAGGCATTTGC
TGGCTGCCGTCGTGTCCACGAAGTCGACTTCGGCATAAAGCAGGGTATGCAATGGCCTGCCTTTCTCCAAGCCCTTGCCC
TCGGTCCCGGCGGTCCTCCGTCTTTCCGCCTCACCAGCATTGCCCCGCCGCGTCCGAACAAGAACTT---CTTGCAGCAG
CTGGGCTGGAATCTTGCCCAGTTCGCGCACACTATCCAAGTGGATTTCCACTACCGCGGCCTCGTCGCCGCTACGCTCGC
TTACCTGGAGCCATCCATGCTGCAGCCGGAGGGTGAGGAGGAGGACCGAAATGAAGAACCCGAGGTAATCGCCACATCAA
CTCCGTCTTCGAGATGCACCGGCTGCTCGCGCAGCCTGGCGCCCTTGAGAAGGTCCTAGGCACCGTGCACGCCCTGCGGC
CGAGGATCATTACCATGGTAGAGCAGGAGGTAAACCACAACT-CGGCTCTTTCCTGGACCGCTTCACCGAGTCT------
-----------------------------CTGCAATACTACTCTGCCATGTTCGATTCTCTTGAGGGTGCCGGCTCT---
---GGCCCGTCCGAAGTCTCATCGGGGGCT-GCTGCTGCTGGT---------GGTACGGACCAGGCCATGTCAGAGGTGT
ACCTTGGCCAGCAGATTTGCAACGTGGTGGCTTGCGAGGGCGCGGAGCGCACAGAGCACCACGAGACTCTGGAGCAGTGG
CGGAACCGTCTTGGCAATGCCGGGTTCGAGACCGCGCACCTGGGCTCCAATGCCTACAAGCAGGCCAGCACGCTGCTGGC
TCTCTTCAGCGGGGCCGATGGGTACAAGGTGGAGGAGCAGGAAGGTTGCCTAACACTTGGGTGGCACACTCGCCCGCTGA
TCGCCACTTCGGCTTGGCGCCTCGCCGCACCGTGATCACAAGTTTTATATGA--TGTGAGTACACATCATGAGCATGGAG
CACAAC--------------------------------------------------------------------------
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>chr4B_2028
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-----------------------------------TCAAGCAGGGGATGCAGTGGCCCGCCCTTCTCCAGGCCCTAGCCC
TCCGTCCCGGCGGCACCCCCTCGTTCCGCCTCACCGGCGTCGGCCCCCCGCAGCCGGACGAGACCGACGCCTTGCAGCAG
ATGGGCTGGAAGCTCGCCCAGTTCGCGTACACCATCCGCGTCGACTTCCAGTACCGCGGCCTCGGCGCCGCCACGCTGGC
GGACCTGGAGCCGTTCATGCTGCAGCCGGAGG------------ACTCAAACGAGGAACCCGAGGTAATCTCCG--TCAA
CTCAGTCTTCGAGATGCACCGGCTGCTCGCCCAGCCCGGCGCCATGGAGAAGGTCCTGGGCACCGTGCGCGCCGTGCGGC
CGAGGATCGTCACCGTGGTAGAGCAGGAGGGGAACCACAACTCCGGCACATTCCTGGACCGCTTCACCGAGCACTACTAC
TACTCCACCATGTTCGATTCCTGGACTCGCTGCACTACTACTCCACCATGTTCGATTCCCTCGAGGGCGGCAGCTC---C
GGCGGCCCATCCGAAGTCTCATCGGGGGGCAGCTGTTGCTCCTGCCGCCGCCGGCACGGACCAGGTCATGTCTGAGGTGT
ACCTCGGCCGGCAGATCTGTAACGTGGTGGCCTGCGAGGGGGCGGAGCGCACAGAGCGCCACGAGACCCTGGG-------
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>chr5A_2028
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-----------------------------------TCAAGCAGGGGATGCAGTGGCCCGCCCTTCTCCAGGCCCTAGCCC
TCCGTCCCGGCGGCACCCCCTCGTTCCGCCTCACCGGCGTCGGCCCCCCGCAGCCGGACGAGACCGACGCCTTGCAGCAG
ATGGGCTGGAAGCTCGCCCAGTTCGCGTACACCATCCGCGTCGACTTCCAGTACCGCGGCCTCGGCGCCGCCACGCTGGC
GGACCTGGAGCCGTTCATGCTGCAGCCGGAGG------------ACTCGAACGAGGAGCCCGAGGTAATCTCCG--TCAA
CTCAGTCTTCGAGATGCACCGGCTGCTCGCCCAGCCCGGCGCCATGGAGAAGGTCCTGGGCACCGTGCGCGCCGTGCGGC
CGAGGATCGTCACCGTGGTGGAGCAGGAGGGGAACCACAACTCCGGCACATTCCTGGACCGCTTCACCGAGCACT-----
---------------------------------ACTACTACTCCACCATGTTCGATTCCCTCGAGGGCGGCAGCTC---C
GGCGGCCCATCCGAAGTCTCATCGGGGGGCAGCTGTTGCTCCTGCCGCCGCCGGCACGGACCAGGTCATGTCTGAGGTGT
ACCTCGGCCGGCAGATCTGTAACGTGGTGGCCTGCAAGGGGGCGGAGCGCACAGAGCGCCACGAGACCCTGGG-------
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>chr7B_2028
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-----------------------------------TCAAGCAGGGGATGCAGTGGCCCGCCCTTCTCCAGGCCCTAGCCC
TCCGTCCCGGCGGCACCCCCTCGTTCCGCCTCACCGGCGTCGGCCCCCCGCAGCCGGACGAGACCGACGCCTTGCAGCAG
ATGGGCTGGAAGCTCGCCCAGTTCGCGTACACCATCCGCGTCGACTTCCAGTACCGCGGCCTCGGCGCCGCCACGCTGGC
GGACCTGGAGCCGTTCATGCTGCAGCCGGAGG------------ACTCGAACGAGGAGCCCGAGGTAATCTCCG--TCAA
CTCAGTCTTCGAGATGCACCGGCTGCTCGCCCAGCCCGGCGCCATGGAGAAGGTCCTGGGCACCGTGCGCGCCGTGCGGC
CGAGGATCGTCACCGTGGTGGAGCAGGAGGGGAACCACAACTCCGGCACATTCCTGGACCGCTTCACCGAGCACTACTAC
TACTCCACCATGTTCGATTCCTGGACTCGCTGCACTACTACTCCACCATGTTCGATTCCCTCGAGGGCGGCAGCTC---C
GGCGGCCCATCCGAAGTCTCATCGGGGGGCAGCTGTTGCTCCTGCCGCCGCCGGCACGGACCAGGTCATGTCTGAGGTGT
ACCTCGGCCGGCAGATCTGTAACGTGGTGGCCTGCGAGGGGGCGGAGCGCACAGAGCGCCACGAGACCCTGGG-------
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>chr1B_2028
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-----------------------------------TCAAGCAGGGGATGCAGTGGCCCGCCCTTCTCCAGGCCCTAGCCC
TCCGTCCCGGCGGCACCCCCTCGTTCCGCCTCACCGGCGTCGGCCCCCCGCAGCCGGACGAGACCGACGCCTTGCAGCAG
ATGGGCTGGAAGCTCGCCCAGTTCGCGTACACCATCCGCGTCGACTTCCAGTACCGCGGCCTCGGCGCCGCCACGCTGGC
GGACCTGGAGCCGTTCATGCTGCAGCCGGAGG------------ACTCGAACGAGGAGCCCGAGGTAATCTCCG--TCAA
CTCAGTCTTCGAGATGCACCGGCTGCTCGCCCAGCCCGGCGCCATGGAGAAGGTCCTGGGCACCGTGCGCGCCGTGCGGC
CGAGGATCGTCACCGTGGTGGAGCAGGAGGGGAACCACAACTCCGGCACATTCCTGGACCGCTTCACCGAGCACTACTAC
TACTCCACCATGTTCGATTCCTGGACTCGCTGCACTACTACTCCACCATGTTCGATTCCCTCGAGGGCGGCAGCTC---C
GGCGGCCCATCCGAAGTCTCATCGGGGGGCAGCTGTTGCTCCTGCCGCCGCCGGCACGGACCAGGTCATGTCTGAGGTGT
ACCTCGGCCGGCAGATCTGTAACGTGGTGGCCTGCGAGGGGGCGGAGCGCACAGAGCGCCACGAGACCCTGGG-------
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>chr6B_2061
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--------------------------------------------------------------------AGGCCCTAGCCC
TCCGTCCCGGCGGCACCCCCTCGTTCCGCCTCACCGGCGTCGGCCCCCCGCAGCCGGACGAGACCGACGCCTTGCAGCAG
ATGGGCTGGAAGCTCGCCCAGTTCGCGTACACCATCCGCATCGACTTCCAGTACCGCGGCCTCGGCGCCGCCATGCTAGC
GGACCTGGAGCCGTTCATGCTGCAGCCGGAGG------------ACTCGAACGAGGAGCCCGAGGTAATCGCCG--TCAA
CTCAGTCTTCGAGATGCACCGGCTGCTCGCCCAGCCCGGCGCCATGGAGAAGGTCCTGGGCACCGTGCGCGTCGTGCGGC
CGAGGATCGTCACCGATGTGGAGCACGAGGGGAACCACAACTCCGGCACATTCCTGGACCGCTTCACTGAGCACTACTAC
TACTCCACCATGTTCGATTCCTGGACTCGCTGCACTACTACTCCACCATGTTCGATTCCCTCGAGGGCGGCAGCTC---C
GGCGGCCCATCCGAAGTCTCATCGGGGGGAAGCTGTTGCTCCTGCCGCCGCCGGCACGGACCAGGTCATGTCTGAGGTGT
ACCCCGGCCGGCATATCTGTAACATGGTGGCCTGCGAGGGGGCGGAGCGCACAGAGCGCCACGAGACACTGGG-------
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------------------------------------------------------------------
>SNPs
SSSSSSSS---S------------S-----------------------------------S--------S----------
-SSSSSS-SSS-SSS--------------S----S-S------S--------------------S---------------
-------------S-S--------------S--S-------------------------------S--------------
-----S-----SS----S-S---S----S------SS-----S-S-S-----------------------------S---
----S---S----------------------------------------S-SSS--------------SS----------
-----------------------------------------------------------SS--------S----------
---------------------------------S------S------------------------------SSSS--SSS
SSSSS-------S-------------------------------------------------------------------
-----------------------------------------------------SS-S-----------------------
--------SSS---S-S--------------------------------------------SSSSSSSSSSSSSSSSSSS
SSSSSSS----------------------------------------SSSSS---SSS-S--------------------
------------SS------S------------SSSS-SSSSSSSSS---------------------------------
---S---------------------------------S---------------S-------S------S------S----
---SSSSSSS-------------------------------------S--------------------------------
---S----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------SSS-----------
-------------------------------S-----------------------S--S---------------------
--S-----------------------------SS---S------------------------------------S-----
--------------------------------------------------------------------------------
----------------S---------------------------------------------------------------
-----------------------------------------S--------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------S-----
---------------------------------------------------------------S----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------S------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------S----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
S--S--------------------------------------------------S--S----------------------
--------------------------------------------------------------------------------
-----------------------------------------------------SSSS-----------------------
------------S---------------------------------S---------------------------------
-----------------------------------------------------------S--------------------
-SS-S--------------------------SSSSSSSS-S-S--S----------------------------------
---------------SSSSS------------------------------------------------------------
--S------------------------------S---S-------S--------S-------------S--SSSSSSSSS
SSSSSSSSSSSSSS-----------S------------S---------------------------------------S-
--S---S--S------------------SSS-------S-----------------------------S-----------
-------------------------------------S-----------------------------S------------
--------SS-----S------S----S------------------------SS--------------------------
---------S-SSSSSSSS-------------------------------------------------------------
---------S----------------S----------------------------S----S-----------SS------
-S---SSS-SSS-------------------------------S-------S----SS--SSSSSS
>forward_925
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-------------------------TTCCTCCTTCTTCCTCCCCC-----------------------------------
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------------------------------------------------------------------
>reverse_2512
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-------------------------------CAACCACAACTCCGGCACAT-----------------------------
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------------------------------------------------------------------
>forward_998
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------------------CCGAGGCAAGCAAAAGCTTG------------------------------------------
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------------------------------------------------------------------
>reverse_3097
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--------------------------------------------------------TGAAGAAGAAGCTAAATGTCATGT
CA------------------------------------------------------------------------------
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------------------------------------------------------------------
