>input_sequence_42097
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--------ATGAGCAGCAGACACGAGGGCGGCGGCCATGGCGCCGCCGCGGCGGCGGCG---GGAGCTGGCGTGGGTAGT
ATCAAGGAGGGCGGCGGCCGGGACGCGCACGAGGACGACCTGGTGATGCCCGGGTTCCGGTTCCACCCGACGGAGGAGGA
GCTGATCGAGTTCTACCTCCGCCGCAAGGTGGAGGGCAAGCGCTTCAATGTCGAGCTCATCACCTTCCTCGACCTCTACC
GCTACGACCCCTGGGAGCTCCCAGGTCTGGAACA--ATCACTCTACTCAATTGCCTCTTTTCAGAATTCAGATCTTTGTG
CTGAATTTC-----------------------------TTATGCGTGGC--TGTGGCTGACCGGCG--------------
--------------------------------------------------------------------------------
-------------------ACCGCAGCGCTGGCGGCGATTGGGGAGAAGGAGTGGTTCTTCTACGTGCCGAGGGACCGCA
AGTACCGGAACGGGGACAGGCCCAACCGGGTGACGGCGTCGGGGTACTGGAAGGCGACGGGGGCGGACAGGATGATCCGG
GC---GGAGAACAACCGCTCCATCGGGCTCAAGAAGACGCTCGTCTTCTACTCCGGCAAGGCGCCCAAGGGCGTCCGCAG
CAGCTGGATCATGAACGAGTACCGCCTCCCCACCGCCGACACCGACCGATACCACAAGGTACGTAGTACCTGTATTCTAG
CATCTCATAGAAATTTCCCTCCTGATCTATCCATCTGCACAAGAAACGGCCGGCCGGAATGATTAATCTGCAGGTAATTT
CATTAGAAGACATGAACTAGGGTTTGTGCTGCGCCTGT--A--------------CTAGTTCTTTGATTTTGGGTAGTAC
CAATTTTGGGGCATATAATTTTGCCTTTATTGTACTTCTTG----TGCATAAATATACGCCGTTTCAGATCTACAAGTAA
TCAGCTAGCTAGGGCTTCAATCTTCTTTATCTTAT-TACTTGCACCATGGTGTTCTTGCCATGA-----------ACAAC
CTACGCACTCGATTGGATATCTCTCTAGATAGCACTATAGCTAGAATCTTGAACATATGAG------GAACC--TAGAAT
TCCATCCTAGATTCCTCAATCTTTTTGACCGGAATCAATTGTAGTATCGACTTTAGAACTAAATTTTCAGCAGAGAGTAG
ACA---TCCTCAATTCTTCGCATGCCACACATTTCCTTG-----TCGATCCTCACGTGT----TACACCTCCATG-----
AATTTGCAGACAGAAATCTCTCTCTGCCGTGTCTACAAGCGCACCGGCATCGACGACGGCCGTGGCCACCCCTCCTCGGC
GCGGTCGACGATGCCCTCCCGCCGCGGCGCTGAG---GCACGGCAGGACAACAGACAAGGGTCATCGTCGACGTCCACGC
CCACGCCACCGCCGACTCCATCCAAGCTCCAACTTCTACAAGCAGGCGAGTGCACGTCGCCGCCGGCGCCCATGACCGAT
CACGCCCAAACGCACAGGCCGGCGG---CTCCAAGGCAGCACCTAGCAGCCACCTTAAAGCCCTCGGGTGGCTCATTAGG
ATACCTACAGTCAACCGCAGCGACCGGCG---ATCATCAGCAGGAGGCAGCCGCGGCGTTGCTGTACCAGCAGTACTCCA
AGAGCACAAACACCTTCGCGTCCACGTACTCGCTGCTCAACCTGGTGAACGCGGCGTCCATGGGCGTCGCCTCCGCCGCG
GCCATCGACGAGCTGAGCACGCTGGTGGGCCACGGCGCCGCCCAGCTGCCGTCCTACCACAGCCCCGCGTCGTCCGGCGG
CCACCACGACCACTTCGTCGTTCCACTGCCGACGCCGCCGACGCAGCCAATTACGCCGCTGGGGACGCTGCCGATGTCGC
TGGCCGCCATCTCCGACAAGATCTGGGACTGGAACCCGATCCCCGACGCGGCGGCGGGCAGAGATTACGGTGGCGCCGGC
TTCAAGTGA-----------------------------------------------------------------------
--------------------------------------------------------------------------------
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--
>chr3D_1_TraesCS3D01G398200
GTTAAAGATCCTCCACCACCATTTGATGATCAAGCATAGATTCCCAATAGAGGTGTTAATGATGCCTAGCCCCCCTCCCC
CCCAAGGCTTTTAGGTTTACACACAAGCTTCCATTTCACCAGACGTCATTGATTAGCTCTAAGGAAATGTTGTTTGTGCT
AGTGGAACTCTCTCATTTGGACTTACGGAGATGCTAGCAAAATGC-------CAATGCCACACTATAGTTATTCATGCCA
GTAGAGTAATAACCTC-ATTCAAGATGAAATTGAGGAGGATAAATTGGTGCAACATATAGGAAAAAT--ATGCATTATAG
GTGCGGAAGAACTTATATTTTGGTTAAAGTTGAAAATATTTACCAA------------------------TACCAGACTT
ACATTGTGGACCCAAGAGAGTAGCCGGGCCCAAAGAAAGAG--TACAGAAAATCACCAAAGCCACCGCATTAATCAATGC
AAAGAATGCAGACGCACTCCATATCCATCACTCACCTCACCGGGGCACAATCACAGGGTTGCAAGCGGGCAACCGCCCAT
GGCTGTACTCTTCCTGAGGCGTCCTTTTCCCCCTATTTAACTCGGCTCCTCCGTCGCTTTCCACCTCTCCCGTGT-GTGT
GTGATGCGTCACGGCTCGCT--CACATATCGCCATTGCCACTCCACTGTGCGCGCGTAGCTCGGGATTCTAGCTAGCGTA
GACTAGTGGTTAGAGCGACCAGTAGCAGCCGTC----CAGTTAATACTCACGCTAGGTAAAGATACTGGATGTATCCCAC
GATCGACTAATCCTTGTGCTTTCTCGTCGATATATATATTGGCCCAAA-CACTAATCTTATCCCTTCCCCCCCTCGATCG
ATTCTCCACTTGCAATACGCGCACCCCGGCCGGGCCGAGCTCCTTTTCGCGAGAGGAAGCAGCTGGCCACTTAACTTGCT
CTCGTGCTCAC----CTAGCTAGCTAGCTAACACCCAGCTGCCCTAGCCCCTAGCTATCTAGCAACCTATGCGAATTGGG
GAGGAGGCATGAGCAGCAGACACGAGGGCGGCGGCCATGGCGCCGCCGCGGCGGCGGCG---GGAGCTGGCGTGGGTAGT
ATCAAGGAGGGCGGCGGCCGGGACGCGCACGAGGACGACCTGGTGATGCCCGGGTTCCGGTTCCACCCGACGGAGGAGGA
GCTGATCGAGTTCTACCTCCGCCGCAAGGTGGAGGGCAAGCGCTTCAATGTCGAGCTCATCACCTTCCTCGACCTCTACC
GCTACGACCCCTGGGAGCTCCCAGGTCTGGAACA--ATCACTCTACTCAATTGCCTCTTTTCAGAATTCAGATCTTTGTG
CTGAATTTC-----------------------------TTATGCGTGGC--TGTGGCTGACCGGCG--------------
--------------------------------------------------------------------------------
-------------------ACCGCAGCGCTGGCGGCGATTGGGGAGAAGGAGTGGTTCTTCTACGTGCCGAGGGACCGCA
AGTACCGGAACGGGGACAGGCCCAACCGGGTGACGGCGTCGGGGTACTGGAAGGCGACGGGGGCGGACAGGATGATCCGG
GC---GGAGAACAACCGCTCCATCGGGCTCAAGAAGACGCTCGTCTTCTACTCCGGCAAGGCGCCCAAGGGCGTCCGCAG
CAGCTGGATCATGAACGAGTACCGCCTCCCCACCGCCGACACCGACCGATACCACAAGGTACGTAGTACCTGTATTCTAG
CATCTCATAGAAATTTCCCTCCTGATCTATCCATCTGCACAAGAAACGGCCGGCCGGAATGATTAATCTGCAGGTAATTT
CATTAGAAGACATGAACTAGGGTTTGTGCTGCGCCTGT--A--------------CTAGTTCTTTGATTTTGGGTAGTAC
CAATTTTGGGGCATATAATTTTGCCTTTATTGTACTTCTTG----TGCATAAATATACGCCGTTTCAGATCTACAAGTAA
TCAGCTAGCTAGGGCTTCAATCTTCTTTATCTTAT-TACTTGCACCATGGTGTTCTTGCCATGA-----------ACAAC
CTACGCACTCGATTGGATATCTCTCTAGATAGCACTATAGCTAGAATCTTGAACATATGAG------GAACC--TAGAAT
TCCATCCTAGATTCCTCAATCTTTTTGACCGGAATCAATTGTAGTATCGACTTTAGAACTAAATTTTCAGCAGAGAGTAG
ACA---TCCTCAATTCTTCGCATGCCACACATTTCCTTG-----TCGATCCTCACGTGT----TACACCTCCATG-----
AATTTGCAGACAGAAATCTCTCTCTGCCGTGTCTACAAGCGCACCGGCATCGACGACGGCCGTGGCCACCCCTCCTCGGC
GCGGTCGACGATGCCCTCCCGCCGCGGCGCTGAG---GCACGGCAGGACAACAGACAAGGGTCATCGTCGACGTCCACGC
CCACGCCACCGCCGACTCCATCCAAGCTCCAACTTCTACAAGCAGGCGAGTGCACGTCGCCGCCGGCGCCCATGACCGAT
CACGCCCAAACGCACAGGCCGGCGG---CTCCAAGGCAGCACCTAGCAGCCACCTTAAAGCCCTCGGGTGGCTCATTAGG
ATACCTACAGTCAACCGCAGCGACCGGCG---ATCATCAGCAGGAGGCAGCCGCGGCGTTGCTGTACCAGCAGTACTCCA
AGAGCACAAACACCTTCGCGTCCACGTACTCGCTGCTCAACCTGGTGAACGCGGCGTCCATGGGCGTCGCCTCCGCCGCG
GCCATCGACGAGCTGAGCACGCTGGTGGGCCACGGCGCCGCCCAGCTGCCGTCCTACCACAGCCCCGCGTCGTCCGGCGG
CCACCACGACCACTTCGTCGTTCCACTGCCGACGCCGCCGACGCAGCCAATTACGCCGCTGGGGACGCTGCCGATGTCGC
TGGCCGCCATCTCCGACAAGATCTGGGACTGGAACCCGATCCCCGACGCGGCGGCGGGCAGAGATTACGGTGGCGCCGGC
TTCAAGTGACGGATCAAGAGGGAAGCGCGTGCGCGGCAACAGTGCATGCACCCGTGCATGGCTAGCTGTGC----AATTG
GTACCACTCCACCT--TGTACACCTCC-TCTCTCTCTCTCTCACTCTCTCC---------CTCTCTCTCTCCACAGTTAT
TATTCTTCTGAGTAAACGAACAATTAGACCATTATAGCATTCTTGGCCAG-TCCATATATAGATCACCCCATCTTCTCAG
GTACTACGTACTCCAGTATGATCAAGAGAATTCAGGATAGATAATTTGTAATTCCTGATGAGTTCCATATAATAACCTCG
-TCGATTTGACATGATACACATGCATGTGTTACTCACTGGCAATGTAGGACCTGGATGGGCGCATGTACTTGCATGTGTC
CAGTCAAAAGTGCCTCGTTTTTAACTGTCTGACTTTGGACACATAAAATAATGCCATGCCGCCAGCTGCATGATTGGGCG
ATGACCATGGCAGAGATTGCCTCACCGGAATGATTAGGAGAGAGAGAGAGAGGAGAGAACTTGCAGGCCGGAGGTGCTGT
CGGGGTGTACTACAGGACCGTGTCAGAGATGGATGTGAGGATTATACTGGCCTGCTGCAATCATGTGAGCGCAACATTTG
TCTTTTCTCTCTTCTCCCACTCTCTGCATGCTCTCTGTATATACAGTCGGAGCACTGTGTTCTCTTGCCATGGTTTGTTG
GATTTTTGTTAGTGCTATCATGGATTATTGGATGAGC----TTGTCAGAGCGTGTCATGGACTCACACT------CACTC
ACCGGTGGATGGTACTTACGGCCAGGCGGTGTCGTCCCGGTTTGCGCCTCGCAGACGTGTGTGGGGATGGAAAGGGAGGT
GAAATGCACCGCCAAATTGGTGTGGGGAGATAAGATACCTCCTGTCTACCTAGTAGCTACTTGGCCCGTGC-----ATGA
GATCGATAACTTGGAGAGGACAGTCTATACTCGTAGGGAGCAAGCTGTTTTCTCAAATATATATTGCTGGTCTTGGTACT
TT
>chr3B_1
GTTAAAGATCCTCCACCACCATTTGATGATCAAGCATAGATTCATAATAGAGTTGTTAATAATGCTTAGCCCC-------
-CCAAGGCTTTTAGGTTTACACATAAGCTTCCATTTCACCAGACGTCATTGATTAGCTCTAAGGAAATGTTGTTTGTGCT
AGTGGAACTCTCTCATTTGGACTTATGGAGATGCTAGCAAATGA--------CAATGCCACACTACAGTTATTTACGCCA
GTAGAGTAATAACCAC-ATTCGAGATGAAATTAAGGAGGATAAATTGGTGCAACATGAGAAGAAGAAAATGCA-------
--GCGGAGGAACTTATATTTTGGTTAAAGTTGAAAATATTTACCAA------------------------TACCAGACTT
ACATTGTGGACCCAAGAGAGTAGCCGGGCGGGCCCAAGGAAGCTACACGAACTCACCAAAGCCACCGCATTAATCAATGA
AAAGAATGCAGACGCACTCC--ATCCATCACTCACCTCACCGGGGCACAATCACAGGGTTGCAAGCGGGCAACCGCCCAT
GGCTGTACTCTTCCTGAGGCGTCCTTTTCCCCCTATTTAACTCGGCTCCTCCGTCGCTTTCCAC--CTCCCGTGT-GTGT
GTGATGCGTCACGGCTCGCT--CA--TATCGCCATTGCCACTCCACTGTGCGCGCGTAGCTCGGGATTCTAGCTAGCGTA
GACTAGTGGTTAGAGCGGCCAGTAGCAGCCGCCCGATCAGTTAATACTCACGCTAGGTAAAG--------------CCAC
CATCGATTAATCCTTGTGCTTTCTGATCGATATATATTGCCCCAGACACCACTAATCTTATCCTTCC--CCCCTCGACCG
ATTCTCCACTTGC-ATACGCGCACCCCGGCCGTGCCGAGCTCCTTTTCGCGAGAGGAAGCAGCTGGCCACTTAACTTGCT
CTCGTGCTCAC----CTAGCTAGCTAGCTAACACCCAGCTGCCCTAGC-------TAGCTAGCAACCTGTGCGGATTGGG
GAGGAGGCATGAGCAGCAGACACGAGGGCGGCGGCCATGGCGCCGCCGCCGCGGCGGCG---GGAGCTGGCGTGTGTAAT
ATTAAGGAGGGCGGCGGCCGGGACGCGCACGAGGACGACCTGGTGATGCCGGGGTTCCGGTTCCACCCGACGGAGGAGGA
GCTGATCGAGTTCTACCTGCGCCGCAAGGTGGAGGGCAAGCGCTTCAATGTCGAGCTCATCACCTTCCTCGACCTCTACC
GCTACGACCCCTGGGAGCTCCCAGGTCTGGAACA--ATCACTCTATTCAATTGCCTCTTTTCAGAATTCAGATCTTTGTG
CTGAATTTC-----------------------------TTATGCGTGGC--TGTGGCTGACCGGCG--------------
--------------------------------------------------------------------------------
-------------------ATCGCAGCACTAGCGGCGATTGGGGAGAAGGAGTGGTTCTTCTACGTGCCGAGGGACCGCA
AGTACCGGAACGGGGACCGGCCCAACCGGGTCACGGCGTCGGGGTACTGGAAGGCGACGGGGGCGGACAGGATGATCCGG
GC---GGAGAGCAGCCGCCCCATCGGGCTCAAGAAGACGCTCGTCTTCTACTCCGGCAAGGCGCCCAAGGGCGTCCGCAG
CAGCTGGATCATGAACGAGTACCGCCTCCCCACCGCCGACACCGACCGATACCACAAGGTATATTCTAGCTATATTCTAG
CATCTCACTGAAATTCCCCTCCTGATCTATCGATCTGAACAAGAAACGA---GCTGGTTTAACTAATTTGCAGGTAATTT
AATTAGCAGGTATGAACTAGGGTTTGTGCTTCGCCTGTGTA--------------CTAGTTCTTTGATGTGGGTTACTAC
CAATTTTTGGGCATCTAATTTTCAAATTGTTCTGCTTATGG----T------GCATACGCCTTTTCAGGTCTGCAAGTTA
ATC---AGCTAGGGCTTCAATCTTTTGTATCTTCT---CTTGCACCTTGTTGTTCATGCCATGAACAACATATGCACAAC
CTATGCACTCGATTGGATATCTCCCTAGATGC-----TAGCTAGCATCTGGAACATATGAA------GAACCTATAGAAT
TCCATCCTAGATTCCTTAACTTTCAGC---------------------------------------------------AG
ACA---TCCTCAATTCTTCGCATGCCACA--TTTGCTTC-----TCGATCCTCAGTCCTCACGTACG--TCCATGAATTA
AATTTGCAGACCGAAATCTCTCTCTGCCGCGTCTACAAGCGCACCGGCATCGACGACGGCCGTGGACACCCCTCCTCGGC
GCGGTCGACGATGCCCTCCCGCCGTGGCACTGCAGCAGCACAGCAGGACAACAGACAAGGGTCATCGTCGACGTCCACGC
CCACGCCACCGCCGACTCCGTCCAAGCTACACCTTCTCCAAGCAGGCGAGTGCACGTCGCCG---GCGCCCATGACCGAT
CACGCCCAGACGCACAGGCCGGCGGCGGCTCCACGGCAGCAGCTAGCAGCCACCGTAAAGCCCTCGGGTGGCTCAATAGG
ATACCTACAGTCGACCGTTGCGGCCGGCGAGCATCATCAGCAGGAGGGAGCCGCGGCGTTGCTTTACCAGCAGTACTCCA
AGAGCACAAACACCTTCGCGTCCACGTACTCGCTGCTCAACCTGGTGAACGCGGCCTCCATGGGCGTTGCCTCGGCCGCG
GCCATCGATGAGCTGAGCACGCTGGTGGGCCACGGCGCGGCCCAGCTGCCGTCCTACCACAGCCCCGCGTCATCCGGCGG
CCACCACGACCACTTCGTCGTTCCCCTGCCGACGCCGCCGTCGCAGCCAATAACGCCGCTGGGGACGCTGCCGATGTCGC
TGGCCGCCATCTCGGACAAGATCTGGGACTGGAACCCGATCCCCGACGCGGCGGTGGGCAGAGATTACGGTGGCGCCAGC
TTCAAGTGACGGATCAAGAGGGAAGCGCCTGCGCGGCAACAGTGTATGCACCCGTGCATGGCTAGCTGTGCAATTAATTG
GTACCACTCCACCT--TGTACACCTCCCTCTTTCTCTCTCTCACTCTCT-C---------CTCTCTCTCTCCACAGTTAT
TATTCTTCTGAGTAAACGAACAATTAGACCATTATAGCATTCTTGTCCAGGTCCATATATAGATCATCCCATCTTCCCAG
-------GTACTCCAGTATGATCAAGAGAATTCAGGATAGATAATTTGTAATTCCTGATGAGTTCCATATAATAACATCG
ATCGATTTGACATGATACACATCCATGTGTTACTCACTGGCAATGTAGGACCTGGATGGGCGCATGTACTTGCATGTGTC
CAGTCAAAAGTGCCTCGTTTTTAACTGTCTGACTTTGGACACATAAAATAATGCCATGCCGCCAGCTGCATGATTGGGAG
ATGACCATGGCAGAGATTGCCTCACCGGAATGATTAGGAGAGAGAGAGAG-GGATAGAACTTGCAGGCCGGGGGTGCTGT
CGGGGTGTACAACAGGACCGTGTCAGAGATGGATGTGAGGATTATACTGGCCTGCTGCAATCATGTGAGCGCAACATTTG
TCTTTTCTCTCTTCTCCCTCTCTCTGCATGCTCTCTGCATGTACAGCGGGAGCACTGTGTTCTCTTGTCATGGATTATTG
GATTTTTGTTAGTGCAATCATGGATTATTGGATGAGCA----TGTCAGAGCGTGTCATGGACTCACTCA---------TC
CCCGGTGGATGGTACGTACGGCCAAGCGGAGTCCCAGTT-TTTGGGCCTCGCAGATGTGTGTGGGGATGGAAAGGGAGGT
GAAACGCAATGCCAAATTGGTGTGGGGAGATAAGATACCTCCTGTCTAGC---TAGCTACTCGGCCCGTGC-----ATGA
GATCGATACCTTGGACAGGGCAGTCTATACTCGTAGGGAGCAAAATTGTTTCTGAAATATATATTGCTGATCTTGGTACT
--
>chr3A_129
--------------------------------------------------------------------------------
------------------------------------------------TTGATTAGCTCTAGC-AAATGTTGTTTGTGCT
AGTGGAACTCTTTCATTTGGACTTATGGAGATGCCAGTAAAATCTAAAATGTCAATGCCACAATGAAGTTACTTATGCCA
GAAGAGTAATAACCTCGATTCAAGATGAAATTAAGGAGGATAAATTGGTGCAACATGAGAAGAAGAAAAATGCATTATAG
GTGCGGAAGAACTTATATTTTGGTTAAAGTTGAAAACATTTTTTTAGACATTAAAGTTGAAAACATTTACTACCAGACTT
ACATTGTGGACCCAAGAGAGTAGCCGGGCCCAAGGAAAGAG--TACAGAGAATCACCAATGCCACCGCATTAATCAATGC
AAAGAATGCAGACGCACTCCATATCCATCACTCACCTCACCGGGGCACAATCACAGGGTTGCAAGCGGGCAACCGCCCAT
GGCTGTACTCTTCCTGAGGCGTCCTTTTCCCCCTATTTAACTCAGCTCCTCCGTCGCTTTCCACCTCCCGCCTCCCGTGT
GTGATGCGTCAGGGCTCGCTCACA--TATCGCCATTGCCACTCCACTGTGCGCGCGTAGGC----ATTCTAGCCAGCGTA
GAGTAGTGGTTAGAGCGACCAGTAGCAGCCGCC----CAGTTAATACTCACGCTAGGTAAAGATACTGGATGTATCCCAC
GATCGACTAATCCTTGTGCTTTCTCATCGATATATATATTGGCCCAAA-CACTAATCTTATCCCTTC--CTTCTCGAACG
ATTCTCCACTTGC-ATACGCGCACCCCGGCCGGGCCGAGCTCCTTTTCGCGAGAGGAAGCAGCTGGCCACTTAACTTGCT
CTCGTGCTCACCTAGCTAGCTGCCTAGCTAACACCCAGCTGCCCTAGCCCCTAGCTAGCTAGCAACCTATGCGAATTGGG
GAGGAGGCATGAGCAGTAGACACGAGGGCGGCGGCCATGGCGCCGCCGCGGCGGCGGCGGGAGGAGCTGGCGTGGGGAGT
ATCAAGGAGGGCGGCGGCCGGGACGCGCACGAGGACGACCTGGTCATGCCGGGGTTCCGGTTCCACCCGACGGAGGAGGA
GCTCATCGAGTTCTACCTCCGCCGCAAGGTGGAGGGCAAGCGCTTCAATGTCGAGCTCATCACCTTCCTCGACCTCTACC
GCTACGACCCCTGGGAGCTCCCAGGTCTGGAACACAATCACTCAATTCAATTGCCG-TTTTCAGAATTCAGATCTCTGTG
CTGAATTTC-----------------------------TCATGCGTGTGTGTGTGGCTGACCGGCG--------------
--------------------------------------------------------------------------------
-------------------ACTGCAGCGCTGGCGGCGATTGGGGAGAAGGAGTGGTTCTTCTACGTGCCGAGGGACCGCA
AGTACCGGAACGGGGACAGGCCCAACCGGGTGACGGCGTCGGGGTACTGGAAGGCGACGGGGGCGGACAGGATGATCCGG
GC---GGAGAACAACCGCTCCATCGGGCTCAAGAAGACGCTCGTCTTCTACTCCGGCAAGGCGCCCAAGGGCGTCCGCAG
CAGCTGGATCATGAACGAGTACCGCCTCCCCACCGCCGACACCGACCGATACCACAAGGTATATCCTAGCTATATTATAG
CATCTCCTAGAAATTCTCCTCCTGATCTATCCATCTGCGCAAGAAACGGCCGGCCGGAATGATTAATCTGCAGGTAATTT
CATTAGAAGACATGAACTAGGGTTTGTGCTGCGCCTGT--AGTCCTGTACTACTACTAGTTCTTTGATGTTGGGTG---C
CAATTTTGGGGCATCTAATTTTGCCTTTATTGTACTTCTTGTGCAT------ATATACGCGGTTTCAGATCTACAAGTAA
TCAGCTAGCTAGGGCTTCAATCTTCTTCATCTTACATACTTGCACCCTGGTGTTCTTGTCATGAACAACCTAT-------
--ACGCACTCGATTGTATATCT------ATAC-----TAGCTAGCATCTTGAACATATGGCTATGAAGAACC--TAGAAT
TCCATCCTAGATTCCTCAATCTTTTTGACCGGAATCAATTGTAGT--CAAGTTTACAATTGAATTTTAACTAGAGAGCAG
ACATCGTCCTCAATTCTTCGCATGCGACA--TTTCCTTGTGCGATCGATCCTCACGTGT----TACG--TCCATG-----
AATTTGCAGACAGAAATCTCTCTCTGCCGCGTCTACAAGCGCACCGGCATCGACGACGGCCGTGGCCACCCCTCCTCGGC
GCGGTCGACGATGCCCTCCCGCCGCGGCGCTGAG---GCACGACAGGACAACAGACAAGGGTCATCGTCGACGTCCACGC
CCACGCCGCCGCCGACTCCATCCAAGCTCCAACTTCTACAAGCAGGCGAGTGCACGTCGCCGCCGGCGCCCATGACCGAT
CACGCCCAAACGCACAGGCCGGCGG---CTCCAAGGCAGCAGCTAGCAGCCGCCGTCAAGCCCTCAGGTGGCTCATTAGG
ATACCTACAGTCAACCGCGGCGGCCGGCGAACATCATCAGCAGGAGGGAGCCGCGGCTTTGCTTTACCAGCAGTACTCCA
AGAGCACAAACACCTTCGCTTCCACGTACTCGCTGCTCAACCTGGTGAACGCGGCCTCCATGGGCGTCGCCTCCGCCGCG
GCCATCGACGAGCTGAGCACGCTGGTGGGCCACGGCGCCACCCAGCTGCCGTCCTACCACAGCCCCGCGTCGTCCGGCGG
CCACCACGACCACTTCGTCGTTCCCCTGCCGGCGCCGCCGTCGCAGCCAATTACGCCGCTGGGGACGCTGCCGATGTCGC
TGGCCGCCATCTCCGACAAGATCTGGGACTGGAACCCGATCCCCGACGCGGCGGCGGGCAGAGATTACGGTGGCGCCGGC
TTCAAGTGACGGATCA--AGGGAAGCGCGTGCGCGGCAACAGTGCATGCACCCGTGCATGGCTAGCTGTGCAATT----G
GTACCACTCCACCTCTTGTACACCTCTCTCTCTCTCTCTCTCTCTCTCT-CTCTCTCTCTCTCTCTCTCTCCACAGTTAT
TATTCTTCCGAGTAAACGAACAATTAGACCATTATAGCATTCTTGGCCA-GTCCATATATAGATCACCCCATCTTCTCAG
-------GTATCATCA----------AGAATTCAGGATAGATAATTTGTAATTCCTGATGAGTTCCATATAATAACCTCG
-TCGATTTGACAAGATACACATGCATGTGTTACTGA----CAATGTAGGACCTGGATGGGCGCATGTACTTGCATGTGTC
TAGTGAAAAGTGCCTCGTTTTTAACTGTCTGACTTTGGACACATAAAATAATGCCATGCCGCCAGCTGCATGATTGGGCG
ATGACCATGGCAGAGATTGCCTCATCGGAATGATTAGGAGAGAGT---------GAGAACTTGCAGGCCGGGGGTGCTGT
CGGGGTGTACTACAGGACCGTGTCAGAGATGGATGTGAGGATTATACTGGCCTGCTGCAATCATGTGAGCGCAACATTTG
TCTTTTCTCTCTTCTCCCTCTCTCTGCATGCTCTCTGCATATACAGTCGGAGCACTGTGTTCTCTTGCCATGGTTTGTTG
GATTTTTGTTAGTGCTATCATGGATTATTGGATTAGCTTGCTTGTCAGAGCGTGTCATGGACTCACTCACTCACACACTC
ACCGGTGGATGGTACGTACGGCCAGGCGGTGTCGTCCCAGTTTGGGCCTCGCAGATGTGTGTGGGGATGGAA--------
GAAATGCACCGCCAAATTGGTGTGGG-AGATAAGATACCTCCTGTCTACC---TAGCTACTTGGCCCGTGCATGAGATGA
AATCGATACCTTGGATAGGACAGTCTATACTCGTAGGGAGCAAAGCTGCTTCTGAAATATATATTGCTGGTCTTGGACT-
--
>chr1D_1082
GGCGGCAGTC----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------GACTCGCATGAGAACGACCTGGTGATGCCGGGATTCCGGTTCCACCCGACGGAGGAGGA
GCTGATCGAGTTCTACCTCCGGCGCAAGGTGGAGGGCCGGCGCTTCAACGTCGAGCTCATCACCTTCCTCGACCTCTACC
GCTTCGACCCATGGGAGCTCCCCGGTACATAGT----------------------------------------CATACAC
ACACATACA---------GCACCGCTTAACT-----------------CAAATTGGGGTCTTGA---------------T
TAATTTCTTGGTGT------------------------------------------------------------------
--------------------TGGCAGCAATGGCGGTGATTGGGGAGAAGGAGTGGTTCTTCTACGTGCCCCGGGACCGCA
AGTACCGGAACGGCGACCGGCCGAACCGGGTGACGGCGTCGGGGTACTGGAAGGCGACGGGGGCCGACAGGATGATCCGC
GG---CGAGAACAGCCGGCCCATCGGCCTCAAGAAGACGCTCGTCTTCTACTCCGGCAAGGCCCCCAAGGGCGTCCGCAG
CAGCTGGATCATGAACGAGTACCGCCTC----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------CCGCCGCCCACCACCGAC
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--
>chr1A_1082
GGCGGCAGTC----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------GACTCGCACGAGAACGACTTGGTGATGCCGGGGTTCCGGTTCCACCCGACGGAGGAGGA
GCTGATCGAGTTCTACCTCCGGCGCAAGGTGGAGGGCCGGCGCTTCAACGTCGAGCTCATCACCTTCCTCGATCTCTACC
GCTTTGACCCATGGGAGCTCCCCGGTACACA--------------------------------CTAGCTAGAACACACAG
CCACACACC---------GC--------TTAGCTCAAATTAATCTTGGCAGATTGGGGTCTTGA---------------T
TGATTTCTTGTTGT------------------------------------------------------------------
--------------------TGGCAGCAATGGCGGTGATTGGGGAGAAGGAGTGGTTCTTCTACGTGCCCCGGGACCGCA
AGTACCGGAACGGCGACCGGCCGAACCGGGTGACGGCGTCGGGGTACTGGAAGGCGACGGGGGCCGACAGGATGATCCGC
GG---CGAGAACAGCCGGCCCATCGGCCTCAAGAAGACGCTCGTCTTCTACTCCGGCAAGGCCCCCAAGGGCGTCCGCAG
CAGCTGGATCATGAACGAGTACCGCCTC----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------CCGCCGCCCACCACCGAC
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--
>chr1B_1082
GGCGGCAGTC----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------GACTCGCACGAGAACGACCTGGTGATGCCGGGGTTCCGGTTCCACCCGACGGAGGAGGA
GCTGATCGAGTTCTACCTCCGGCGCAAGGTGGAGGGCCGACGCTTCAACGTCGAGCTCATCACCTTCCTCGACCTCTACC
GCTTCGACCCATGGGAGCTCCCCGGTACAC---------------------------------------------TACAT
ACACATATACCGATAAACGCACCGCTTATTAGCTCAAATTAATCTTGGCAGATTGGGGCCTTGA---------------T
TGATTTCTTGGTGT------------------------------------------------------------------
--------------------TGGCAGCAATGGCGGTGATTGGGGAGAAGGAGTGGTTCTTCTACGTGCCTCGGGACCGCA
AGTACCGGAACGGCGACCGACCGAACCGGGTGACGGCGTCGGGGTACTGGAAGGCGACGGGGGCCGACAGGATGATCCGC
GG---CGAGAACAGCCGGCCCATCGGCCTCAAGAAGACGCTCGTCTTCTACTCCGGCAAGGCCCCCAAGGGCGTCCGCAG
CAGCTGGATCATGAACGAGTACCGCCTC----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------CCGCCGCCCACCACCGAC
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--
>chr7D_1096
GCACGTGGAGAC--------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------GGTGATGCCCGGGTTCCGTTTCCACCCGACGGAGGAGGA
GCTGATCGAGTTCTACCTCCGTCGCAAGGTGGACGGCAAGCGCTTCAACATCGACCTCATCGCCTCCGTCGACCTCTACC
GCTACGACCCATGGGATCTCCCCGGTACTGCCCAACAACGAATCCACCTAATTATAATCATGGCTAGC----T-----AG
CTTCCCACC---------GC--------GTACATGATTTCATGCATGTGACTCGGGATCCCTTTAATTAACTCGTCTCGT
TGATTTCATGTGACCTCCACCTTCATTCTCACC-TTTTCCTTTCCCGCCTCTCCCCATCTCCATGGGTGCACGGGTCGAT
TGTATTGCGGGGATAAATCATGGCAGCACTGGCGTCGATCGGGGACAAGGAGTGGTTCTTCTATGTGCCTCGGGACCGCA
AGTACCGGAACGGCGACCGGCCGAACCGGGTGACGCCGTCAGGGTACTGGAAGGCCACGGGGGCGGACAGGATGGTGAAA
GTCGTGGAGGGCAACCGCTCCATCGGCCTCAAGAAGACGCTCGTCTTCTACGTCGGCAAGGCACCCAAGGGCCTCCGCAG
CAGCTGGATCATGAACGAGTACCGCCTGCCACACGGTGAAACCGAACGGTACCAAAAGGTA-------------------
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--
>chr7A_1096
GCACGTGGAGAC--------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------GGTGATGCCCGGGTTCCGTTTCCACCCGACGGAGGAGGA
GCTGATCGAGTTCTACCTCCGTCGCAAGGTGGACGGCAAGCGCTTCAACATCGACCTCATCGCCTCCGTCGACCTCTACC
GCTACGACCCATGGGATCTCCCCGGTACTGCCCAACGACGAATCCACCTAATTATAATCATGGCTAGC----T-------
--TCCCACC---------GC--------GTACATGATTTCATGCATGTGACTCGAGATCCCTTTAATTAACTCGTCTCGT
TGATTTCATGTGACCTCCACCTTCATTCTCACC-TTTTCCTTTCCCGCCTCTCCCCATCTCCATGGGTGCACGGGTCGAT
TGTATTGCGGGCATAAATCATGGCAGCACTGGCGTCGATCGGGGACAAGGAGTGGTTCTTCTACGTGCCTCGGGACCGCA
AGTACCGGAACGGCGACCGGCCGAACAGGGTGACGCCGTCGGGGTACTGGAAGGCCACGGGGGCGGACAGGATGGTGAAA
GTCGTGGAGGGAAACCGCTCCATCGGCCTCAAGAAGACGCTCGTCTTCTACGTCGGCAAGGCACCCAAGGGCCTCCGCAG
CAGCTGGATCATGAACGAGTACCGCCTGCCACACGGTGAAACCGAACGGTACCAAAAGGTA-------------------
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--
>chr7B_1096
GCACGTGGAGAC--------------------------------------------------------------------
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-----------------------------------------GGTGATGCCCGGGTTCCGTTTCCACCCGACGGAGGAGGA
GCTGATCGAGTTCTACCTCCGTCGCAAGGTGGACGGCAAGCGCTTCAACATCGACCTCATCGCCTCCGTCGATCTCTACC
GCTACGACCCATGGGATCTCCCCGGTACTGCGCAACGACGAATCCACCTAATTATAATCATGGCTAGCTAGCT-------
--TCCCACC---------GC--------GTACATGATTTCATGCATGTGACTCGAGATACCTTTAATTAACTAGTCTCGT
TGATTTCATGTGACCTCCACCTTCATTCTCACCTTTTTCCTTTCCCTCCTCTCCCCATCTCCATGGGTGCACGGGTCGAT
TGTATTGCGGGCATAAATCATGGCAGCACTGGCGTCGATCGGGGACAAGGAGTGGTTCTTCTACGTGCCTCGGGACCGCA
AGTACCGGAACGGCGACCGGCCGAACCGGGTGACGCCGTCAGGGTACTGGAAGGCCACGGGGGCGGACAGGATGGTGAAA
GTCGTGGAGGGCAACCGCTCCATCGGCCTCAAGAAGACGCTCGTCTTCTACGTGGGCAAGGCACCCAAAGGCCTTCGCAG
CAGCTGGATCATGAACGAGTACCGCCTGCCACACGGTGAAACCGAACGGTACCAAAAGGTA-------------------
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--
>SNPs
-------------------------------------------SS-------S-------S----S-------SSSSSSS
S----------------------S--------------------------------------------------------
-------------------------S-----------------SS--------------------S-------S------
--------------------------------S-----------------------SSSSSS--S-S-------------
--------------------------------------------------------------------------------
---------------------------------S----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------SS------------------------------------------------------
-------------------------------S------------------------------------------------
-------------------------S-----------------------------------------SS--------S--
-------------S------------------------------------------------------------------
---------------------------------------------------------S----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------S----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------SS-SS--S--S--------
---------------S----------------------------------------------------------------
--------------------------------------------------------------------S-------S---
--------------S-------------------------------SSSSSS----------------------------
----------------------------------------------S---------------------------------
-----------------------S-------SSSSSS-------S---------------S-------------------
---------------------------------------------SS-S-S----S--S-S------S-SS------S--
-----------------------------SS-----------------------------------SSS-----------
-----------------------------S--------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------S------------S-------------------------
------------------S---S------------------------S---------------S----------------
-------------------------------------------------------S------------------------
--------------------------------------------------------------------------------
------------------------S---------------S---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------S------------------------------
--------------------------------------------------------------------------------
SSSSSSS-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------S--------------------S--------
--------------------------------------------------------------------------------
------------------S------------------S------------------------------------------
------------------------------------------------------------------S-S-----------
---------------S----------------------S-----S----------S------------------------
--------------------------------------------------SSS---------------------------
--------S------S---------------------------SS-SS-----S--------------------------
SS
>forward_74
-----------------------------------------------------TGTTAATGATGCCTAGCCCCC------
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--
>reverse_2308
--------------------------------------------------------------------------------
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-------------------------------------------------------------------CAGCAGAGAGTAG
ACATCCTCA-----------------------------------------------------------------------
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--
>forward_894
--------------------------------------------------------------------------------
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-------------------------------------------------------------------------TCGATCG
ATTCTCCACTTGCA------------------------------------------------------------------
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--
>reverse_2682
--------------------------------------------------------------------------------
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-----------------------------------------CCTAGCAGCCACCTTAAAGC-------------------
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--
>forward_2351
--------------------------------------------------------------------------------
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----------CAATTCTTCGCATGCCACACA-------------------------------------------------
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--
>reverse_3909
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------TCACTCACCGGT
GGATGGTA------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--
