>input_sequence_42089
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------------------------------ATGGGGAAGAACCAGGCGTACAAGGCGATGCAGCGGGCGC
GGCTGGGCTCGTCCTCCGGCGCCCC-CGGCGAAGGGGAGGAAGACGGCATGGTCGGTCCCCTTCCTCACC-CCCCTTACC
ACAGATCCTTAATCC----------CCCCTAGTTCCAAGCTCGCAGCAATCCATATCTGATTGCTCCGCCC---GCAAAC
CCTATCTAGATCTGCCGGGACGTCCATGGCGAATCTTGCTGCTTGTAGATGCTTTCTTT-TCCTTTTGATGATGAGGGGA
CTTTTACTAACGAGGGCCGTCACAGACGGACGGTTCATTTCATTCTCCAGAGTGGCACGCGGCGCGCTTGGCCAGCCTCA
ACAAGACCCACACCCTCACGTGGGAGGAGTTCAAGAAGAAGCAGAAGGTATGCGCGGC----CTCGGCTTGCTCTCTGCT
GGCTTTTGTTGGTGGA-TTTAGTTTCTTCGCTCTGTAATTTTGG---------CCATGATTTTATCCATGCTGCT-----
---GCTTAAGCTCTGCGATGTGCTATTTGTGCTCCTATTTTATGTTA--AATGTATGATGGAAGCTGAATTTCAGGCATA
CTGCCTTGTATGTGATGCCCAAGTTTGTTTTGGCCTGGTGTGGAATGGCGATTGACTTTATAGTGCATATAGCAACGAAT
TAAGCTACGTTGTAGCATAGGAGGGAAATTAGCAGCCTGAACTTTGGCAGTGGAAGCTTGGTCCTGTGCCACCCAGGGTC
TAGTCGTCCTTCCTCTGGTTTGCTGACCTTTGAGTTTCTCTAGCATCGGTTTGCCATCAGACA-TTAGACTCGTGCTACC
GTAAAAGGTAGTACAACCATTTGTCAGTGGCACACCCATTATTGCAGCCATCCACGATAGTTTACCTAGCTTCAGAAGTC
TAATGATGCCATTTACTTGGTTTTCA------------------------------------------------------
-----------------------------CTTGTTCTCTTTGATAAATAGCAACTTAGACGGAGTATGTATATGCTGATT
CCAAACAGATCAACCTA-GGTCCGCATTAGGCGGGGTGGGGTTTACTTGGCAAA-GCTTTATTGTTTTCTGCATTGACTC
CACATGGTTATTGGCTTACTAGTTAGC--ACTATAGATCAGGCTCAGCCTTTTTGTACT--TATAAGGTCACTGTGTGGC
TATAATAGTTATCTATTATCAGTACCTTCATAGTAATTAATGATGCTCTTGTCCCCTATAGGACGAGGAGCTAAAGAGAG
GTGAGGTGGAGGCTGACAAAGATAAAATGATGAGAGAGTATAGAGCTCAACTGGATGCTGAAAGGGCCCAAAAGCTTGGT
CGTGGAAGAGACGTTGTAAAGTCAAAATCATCATCTTCCAAGAAAGGTAAATCAACTTAATGACGTGCTGAACGATGTTT
GTTACATTTAGGTCCCAGTAGGTGA-ACTCTTTCTTAAATCTATCCCATGTGTTGAG-TTTCTGACAAAGAATTATGGAT
ACAGAAAAGAAGGAAAAGGACGCAAAGAAACGGATTAAAAAGAGGAGGAAGGTATTACTCTCAAATACAAATGTAATAAT
TGGCCACATCATGATGAATGGAAAACACCAAAAAGTATCCGCTATATAAATGATTCTAGATATAAGCATTTTTTTTACCT
TCTCCTGTTGGGATGAATTTGGGAAACAAAAATGGTCCTACTTGCTCACTTCTGCATTCTTACAGCACAGAAGTTCGTCA
GAAAGTTCCAGCTCATCAGAATCATCAAGTAGTGATGATGAGGACAGGGGTTCAAGAAAATCCCGATCCCGATCAAGATC
AAAGCGAAGTAAGAAAGATAAGAAGCACAGGTCCCGATCCAAGCATGCGGGAAGTGACAGCGAGGAGGAAGGCCCTGTTC
GCCTCTCGAAATTCTTTGGGAATGCAAAGAATTAG---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-
>chr2A_1_TraesCS2A01G353200
GCACGAGTTAGGGTACTAAGGCACTCATGTCTTAGTACACCAACAACCTTGTATGGATCTTCACAGTGATCCTGGGAACT
TAATTTGTAGGGTAATTTTTTTGTTTTGTTTTCTATTATGTTTATCAACAACAACTTCACATTAAAGTCATCGGACGGGA
GGAAGAGGGGA-GGGGAGGTGATCCAACGAACTCAACTATATCGGGTTGGGTGAGTGTGTAGTACGTTTGCTCCGATCTC
ATGCCATCTCAATGTATTTTTCTTCCTAAATGAATTTGACACCTCCTTGACCATTAGAACTGACAATCTAAAGTTAATGT
TATTCAACCAAATTAATTTACTCGGGTCATAACCCATGTCTTGAGCTCACACCACGATCCTCAAATG-------------
-------------------------------------TCAACCAACAAACTTTAATTCATACGAAGTAATGTTTTCTTTT
GTTGCAACACACGTACATTTATGCTAATATAAACAAAGAAGAGATGCGCCCTTGCTCAATCCGACCTGGGGAAATATCAT
GTGCTACCAACGTTTAGGTGATACCGTGATACGGGCTCTTGGTAA-CGTTGGATATCAGATCAAACGGCTCCTATGAGCT
ATTAAACATT-TTACAAAAAAAATCATCGAAGAATCTTGAAATTGCGTGCAGGTACAACAACTCCTTATATGCCGTCGGA
TCTGAGATCCAACGGTTCAGACGTCCGTATCATGGTAGCATATGAAGACCGGT------------------ATCCA-GCC
ATCCAGTTCCGATCAGACGGTAGACACGCGGCCGCAGCAGCAGCCCGCGGGCGGAGAGTTCCTCCCACAGGCCAGAGCCA
GAGGAGGGGAGGCCTT--CCTTCCCCTTCCCCCATCTTCTCCTTTACCTTATCGGCGTCATCGCCATCACCCGTCATAAC
TCGCGGCCGCACGCGTCGTACCAAAAGGAGGGAGGAAAAAGGGATCTCCACTCCACTCCGCCTCCC------CCTCCGCC
CCGCACGGTTCCAATCTGGTTCTCGGCCCAGCAATCGAGGATGGGGAAGAACCAGGCGTACAAGGCGATGCAGCGGGCGC
GGCTGGGCTCGTCCTCCGGCGCCCC-CGGCGAAGGGGAGGAAGACGGCATGGTCGGTCCCCTTCCTCACC-CCCCTTACC
ACAGATCCTTAATCC----------CCCCTAGTTCCAAGCTCGCAGCAATCCATATCTGATTGCTCCGCCC---GCAAAC
CCTATCTAGATCTGCCGGGACGTCCATGGCGAATCTTGCTGCTTGTAGATGCTTTCTTT-TCCTTTTGATGATGAGGGGA
CTTTTACTAACGAGGGCCGTCACAGACGGACGGTTCATTTCATTCTCCAGAGTGGCACGCGGCGCGCTTGGCCAGCCTCA
ACAAGACCCACACCCTCACGTGGGAGGAGTTCAAGAAGAAGCAGAAGGTATGCGCGGC----CTCGGCTTGCTCTCTGCT
GGCTTTTGTTGGTGGA-TTTAGTTTCTTCGCTCTGTAATTTTGG---------CCATGATTTTATCCATGCTGCT-----
---GCTTAAGCTCTGCGATGTGCTATTTGTGCTCCTATTTTATGTTA--AATGTATGATGGAAGCTGAATTTCAGGCATA
CTGCCTTGTATGTGATGCCCAAGTTTGTTTTGGCCTGGTGTGGAATGGCGATTGACTTTATAGTGCATATAGCAACGAAT
TAAGCTACGTTGTAGCATAGGAGGGAAATTAGCAGCCTGAACTTTGGCAGTGGAAGCTTGGTCCTGTGCCACCCAGGGTC
TAGTCGTCCTTCCTCTGGTTTGCTGACCTTTGAGTTTCTCTAGCATCGGTTTGCCATCAGACA-TTAGACTCGTGCTACC
GTAAAAGGTAGTACAACCATTTGTCAGTGGCACACCCATTATTGCAGCCATCCACGATAGTTTACCTAGCTTCAGAAGTC
TAATGATGCCATTTACTTGGTTTTCA------------------------------------------------------
-----------------------------CTTGTTCTCTTTGATAAATAGCAACTTAGACGGAGTATGTATATGCTGATT
CCAAACAGATCAACCTA-GGTCCGCATTAGGCGGGGTGGGGTTTACTTGGCAAA-GCTTTATTGTTTTCTGCATTGACTC
CACATGGTTATTGGCTTACTAGTTAGC--ACTATAGATCAGGCTCAGCCTTTTTGTACT--TATAAGGTCACTGTGTGGC
TATAATAGTTATCTATTATCAGTACCTTCATAGTAATTAATGATGCTCTTGTCCCCTATAGGACGAGGAGCTAAAGAGAG
GTGAGGTGGAGGCTGACAAAGATAAAATGATGAGAGAGTATAGAGCTCAACTGGATGCTGAAAGGGCCCAAAAGCTTGGT
CGTGGAAGAGACGTTGTAAAGTCAAAATCATCATCTTCCAAGAAAGGTAAATCAACTTAATGACGTGCTGAACGATGTTT
GTTACATTTAGGTCCCAGTAGGTGA-ACTCTTTCTTAAATCTATCCCATGTGTTGAG-TTTCTGACAAAGAATTATGGAT
ACAGAAAAGAAGGAAAAGGACGCAAAGAAACGGATTAAAAAGAGGAGGAAGGTATTACTCTCAAATACAAATGTAATAAT
TGGCCACATCATGATGAATGGAAAACACCAAAAAGTATCCGCTATATAAATGATTCTAGATATAAGCATTTTTTTTACCT
TCTCCTGTTGGGATGAATTTGGGAAACAAAAATGGTCCTACTTGCTCACTTCTGCATTCTTACAGCACAGAAGTTCGTCA
GAAAGTTCCAGCTCATCAGAATCATCAAGTAGTGATGATGAGGACAGGGGTTCAAGAAAATCCCGATCCCGATCAAGATC
AAAGCGAAGTAAGAAAGATAAGAAGCACAGGTCCCGATCCAAGCATGCGGGAAGTGACAGCGAGGAGGAAGGCCCTGTTC
GCCTCTCGAAATTCTTTGGGAATGCAAAGAATTAGATGCTATATCGATACGCCCAATACCAATTTGCTTGCACCTGAGGT
CATATCATTTTGAATCGTCAATTGGTGGGTGTTGATTGTATTCTATTGAGACGACTCTCAGAAGGTTGTGGGAACCAGTT
TCCA---TGTTGTTTCTCAACAGAATGTTCGGTAACTGGAGGTTTAGGTGTTGAACCATTATATGGTATCCTGCAACTTG
TAAGAAATATCAAATCATTGTTACATTGTTGTACTTGATGGATAGTGACAGTATTTATATTCGATTTGAACTGCTTTAAT
TCTTTTCAGAACTTGATATTTA---TATTATTTATCTTTGGTTGATCTTTAGATCTCTTTTATGAGAATTGGCTTCTCTG
TTGGTGTATTTGCTGTGAGCTATGAAAAATACAGTCCCCTCCGTCTCTATGTTTGATTAAATTCACACAAAAAAAATATT
AACACGTAGTACTATATATATACACATGTTCTACCTCTGTAACTAAATATAAGATGTTTTTGCAGTTTCTCTTCAGTAAC
TAAATATAAGATTTTTTTCCCTCAAATTTTTTTTAAGACTTTTGCAGTTCATTTGAACGATAGTACAATACAAAATAAGT
AAAATATGAAAAAAAATATCATAATGAATCTGATGATACTGATTTGGTATTTGTGGATAAACTTGGTCAAATTCAGTGTA
GTATGACATTAATTTTTATAAAAAAGTAGAGGTATTACCTTGCTAACAATTGGCAGAGAAGAAAAAAAGTGTAGCATCCT
TGCAAATGAACAAAATTTATCTTTCCCGGTGATTTTTTTTCTTTTCTTTTTTGACATCTCCCGATGGCACACTGGCACTG
GCTAATTTTTTTAAAATAATACATTTTTTATATTAAATTTCAGAAATATTACGCTGTAATTATATTTTTTAAAAATATTA
ACCAATCGGCCTACTGCTGATCGATTGGACCCAGTCGGCCTGCTGCTGGCCGATTGGCCCCCAATGGCCCACTGCGGGCT
G
>chr2B_45
--------------------------------------------AACCTTGTATGCATCTTCATAGTGATCCTGGGAACT
TAATTTGTAAGGCAA-TTTTTGGTTTTGTTTTCTATC----TTCTCAACAACAACTTCACATTGAAGTCGTCGGGCGGGA
GGAAGAGGGGAGGGGGAGGTGATCTAACGAACTCAGCTATATC-GGTTGGGTGAGTGTGTAGTATGTTTGCTCCGATCTC
AAGCCATCTCAATGTATTTTTCTTCATAAATGAATTTGCCGCCTCCTTGACCATTAGAACTGATAGTCTAAAGTCAATGT
TGTTCAACCAAATTAATTTACTCGGATCATAACCCATGTCTTGAGCTCACACCACGATCCTCAAGTGATCCGTCTTTTCT
TTTGTCATCAACGACCGTTCTTCCATGACACAATTCCTCGACCAACAAACTTTAACTCATACAAAGCAATGTTTTCTTTT
GTTGCAACACACAAACATTTATGCTAGTATAAACAAAGAAGAGATGCGTCCTTGCTCAATCTGGCC--------------
----------CGTTTAGGTGATACCGTGATACAGGCTCTTGACAACCGTTGGATCTCAGATCAAACGGCTCCCGGGAGCT
CTTGGACATTTTAC--AAAAAAATCATTCAAGAGTCTTGAAATTGTGTGCAGGTATAACAACTCCTCAGGTGCCGTCGGA
TCTGAGATCCAACGGTCCAGACGTGTGTATCATGGTAGCATACGAAGGCCGGTATCACCTGAAACTTTCCCATCCA-GCC
GTCCAGTTCCGATCAGACGGTAGACATGCGGCCGCAGCAGCAGCCCGCGGGCGGAGAGTTCCTCCCACAGGGCAGAGCCA
GAGGAGGGGAGGCCTT--CCTTCCCC------CATCTTCTCCTTTACCTTATCGGCGTTATCGCCATCACCCGTCATAAC
TCGCGGCCGCACGCGTCGTACCAA-AGGAGGGAGGAAAAAGGGATCTCCACTCCACTCCGCCTCCT------CCTCCGCC
CCGCGCGGTTCCAATCTGGTTCCCGGCCGAGCAATCGAGGATGGGGAAGAACCAGGCGTACAAGGCGATGCAGCGGGCGC
GGCTGGGCTCGTCCTCCGGTGCCCC-CGGCGAAGGGGAGGAAGACGGCATGGTCGGTCCCCTTCCTCACC-CCCCTTACC
ACAGATCCTTAATCC----------CCCCTAGTTCCAAGCTCGCA---ACCCATCTCTGATTGCTCCCCCCCGTGCAAAC
CCTATCGAGATCTGCCGGAACGGCCATGGCGAATCTTGCTGTTTGTAGATGCTTTTTCC--CCTTTTG---ACGAGGGAA
CTTTTACTAACGAGGGCCGTCACAGACGGACGGTTCATTTCATTCTCCAGAGTGGCACGCGGCGCGCTTGGCCAGCCTCA
ACAAGACCCACACCCTCACGTGGGAGGAGTTCAAGAAGAAGCAGAAGGTATGCGCGGC----CTGGACTTGCTCTCTGCT
GGC-TTTGTTGGTGGA-TTTAGTTTCTGCACTCTATAATTTTGG---------CCATGATTTTATTCATGCTGCT-----
---GCTTAAGCTCTGCGATGTGCTATTTGTGCTCCTATTTTATGTTA--AATGTATGATGTATGCTGAATTTCAGGCATA
CTGCCTTGTATGTGATGCCCAAGTTTGTTTTAGCCTGGTGTGGAACGGCGATTCACTTTATAGTGCATATAGTAACGAAT
TAAGCTACGTTGTAGCATTTGAGGGGAATTAGCAGCCTGAACTTTGGCAGTGGAAGCTTGGTCCTGTGCCACCCAGGGTC
CAGTTGTCCTTCCCCTGGTTTGCTGACCTTTGAGTTTCTCTAGCACCGGTTTGCCATCAGACATTTAGACTTGTGCTACT
GTAAAAGGTAGTACAACCATTTAGTGG-----CACCGCTTATTGCAGACATCCATCATACTTTACCTAGCTTCAGAAGTC
TAATGATGCCATTTGCTTGGCTTC--------------------------------------------------------
--------------GATTCCTTTACTTGTCTTGTTATCTTTGATAAATAGCATCTTAGGCGGAGTATGTATATGCTGATT
CCAAACAGATCAACCTACGGTCAGCATTAGTTGGGTTGGCGTTTACTTGGCAAATG-TTTATTGTTTTCTGCATTGATTC
CACACGGTTATTGGCTT------------ACTGCAGACCAGCCTAAGCCTTTTTGTACTTATATAAGGTCACTGTGTAGC
C---ATAGTTATCTATTATCAGTACCTCCATAGTCATAAATGATGCTCTTGTCCCCTATAGGACGAGGAACTAAAGAGAG
GTGAGGTGGAGGCTGACAAAGATAAAATGATGAGAGAGTATAGAGCTCAACTGGATGCTGAAAGGGCCCAAAAGCTTGGC
CGTGGAAGAGACGTTGTAAAGTCAAAATCATCATCTTCCAAGAAAGGTAAATCAACTTAATAACATGCTGAACGATGTTT
CTTACATTTAGGTCCCATTAGGTGAAACTCTTTCTTAAATCTGTTCCATGTGTTGAGTTTTCTGACAAAGGATTATGGAT
ACAGAAAAGAAGGAAAAGGACGCAAAGAAACGGATTAAAAAGAGGAGGAAGGTATTACTCTCAAATACAAATGTAATAAT
TGGCCACATTATGATGAATGGAGAACACCAAAAAGTATCCGCTATATAGATGATTCTAGATATAAGCATT-TTTTTACCT
TCTGCTGTTGGGATGAATTTGGGAAACAAAAATGGTCCTACTTGCTCACTTCTGCATTCTTACAGCACAGAAGTTCGTCA
GAAAGTTCCAGCTCATCAGAATCATCAAGTAGTGATGATGAGGACAGGGGTTCAAGAAAATCCCGATCCCGATCAAGATC
AAAGCGAAGTAAGAAAGATAAGAAGCACAGGTCCCGATCCAAGCATGCCGGAAGTGACAGCGAGGAGGAAGGCCCTGTTC
GCCTCTCGAAATTCTTTGGGAATGCAAAGAATTAGACGCTATATCGATACGCCCAATACCAATTTGCTTGCTCCTGAGGT
CATATCATTTTGAATTGTCAATTGGTGGGTGTTGATTGTATTCTATCGAGACAACTGTCAGAAGGTTGTGGGAACCAGTT
TCCA---TGTT---TCTCAACAGAATGTTTGGTAATTGGAGGTTTAGGTGTTGAACCATTATATGGTATCCTGCAACTTG
TAAGAAATATCAAATCATTGTTACATTGTTGTACTTGATGGATAGTGACAGTACTCATATTCGATTTGAACTGCTTTAAT
TCTTTTCAGAACTTGATATTTAA-TTATTATCTTCCTTTGGCTGATCTTTAGATCTCCTTTATGAGAATTGGCTACTCTG
TTGGTGTATTTGCTATGAGCTATGAAAAATACAGCCCCCTCCGTCTCTATGATTAAATTG------ACAGAAAATATATT
AACATGTATACAATA-----------------------------------------------------------------
--------------------------------------------------------------------------------
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-
>chr2D_45
--------------------------------------------AACCTTGTATGCATCTTCATAGTGATCCTGGGAACT
TGATTTGTAGGCCAATTTCTTTGTTTTGTTTTCTATTACATTTCTCAACAACAACTTCACATTGAAGTTGTCCGGCGGGA
GGAAGAGGGGAGGGGGAGGTGATCCAACAAACTCAGCTATATCGGGTTGGGTGAGTGTGTAGTAGGTTTGCTCCGATCTC
ATGACATCTCGATGTATTTTTCTTCCTAAATGAATTTTCCACCTCCTTGACGACTAGAACTGATAGTCTAAAGTTAATGT
CGTTCAA----ATTAATTTACTCGGATCATAACCCATGTCTTGAGCTCACACCACGATCCA-----------TCTTTTCT
GTTGTCATCAATGACAGTTCTTCCATGACACAATTCCTCGACCAGCAAACTTTAATTCATACAAAGCAATATTTTCTTTT
GTTGCAACACACATACATTTATGCTAGTATAAACAAAGAAGAGATGCACCCTTGCTCAATCCGGCCCAAGGAAATATGAT
GTGCTACCAGCGTTTAGGTGATACCGTGATATGGACTCTTGGCAGCCGTTGGATCTCAAATCAAACGGCTTTCGGAAGCT
CTTGAACATT-TAC--AAAAAAGTGATCTAAGAGTCTCGACATTGCGTGCAGGTACAACAACTCTTAAGATGCCGTCGGA
TCTGTGATCCAACGGTCCAAATGTCCGTATAACGGTAGCATATGAAGACCGATATCACCTGAAACTTTGGCAATCCGGCC
ATCCAGTTCCGATCAGACGGTAGACACGCGGCCGCAGCAGCAGCCTGCGGAGGCAGAGTTCCTCCCTCAGGCCAGAGCCA
GAGGAGGGGAGGCCTTCCCCTTGCCC------CATCTTCTCCTTTACCTTATCGGCGTTATCGCCATCACCCGTCATAAC
TCGCGGCCGCACGCGTCGTACCAA-AGGAGGGAGGAAAAAGGGATCTCCACTCCACTCGGCCTCCT------CCTCCGCC
CCGCGCGGTTCCAATCTGGTTCCCGGGCCAGCAATCGACGATGGGGAAGAACCAGGCGTACAAGGCGATGCAGCGGGCGC
GGCTGGGCTCGTCCTCCGGCGCCCC-CGGCGAAGGGGAGGAAGACGGCATGGTCGGTCCCCTTCCTCGCC-CCCCTTACC
ACAGATCCTTAATCC----------CCCCTAGTTCCAAGCTCGCA---ACCCATCTCTGATTGCT-CCCCCCGTGCAAAC
CCTATCGAGATCTGCCGGGACGTCCATGGCGAATCTTGCTGCTTGTAGATGCTTTTTCC-CCCTTTTG---ATGAGGGGA
CTTTTACTAACGAGGGCCGTCACAGACGGACGGTTCATTTCATTCTCCAGAGTGGCACGCGGCGCGCTTGGCCAGCCTCA
ACAAGACCCACACCCTCACGTGGGAGGAGTTCAAGAAGAAGCAGAAGGTATGCGCGGC----CTCGGCTTGCTCTCTGCT
GGC-TTTGTTGGTGGATTTTAGTTTCTGCACTCTGTAATTTTGG---------CCATGATTTTATCCATGCTGCT-----
---GCTTAAGCTCTGCGATGTGCTATTTGTGCTCCTATTTTATGTTA--AATGTATGATGGATGCTGAATTTCAGGCATA
CTGCCTTGTATGTGATGCCCAAGTTTGTTTTGGCCTGGTGTGGGATGGCGATTCACTTTGTAGTGCATATAGTAACGAAT
TAAGCTACGTTGTAGCATAGGAGGGAAATTAGCAGCCTGAACTTTGGCAGTGGAAGCTTGGTCCTGTGCCACCCAGGGTC
CAGTCGTCCTTCCCCTGGTTTGCTGACCTTTGAGTTTCTCTAGCATCGGTTTGCCATCAGACATTTAGACTTGTGCTACT
GTAAAAGGTAGTACAACCATTTATCAGTGGCACACCGCTTATT-CAGCCATCCACGATACTTTACCTAGTTAGCTTGAAA
AACGATCTTATATTTTACTCCCTCCGTCCCACAATATAAGATCGTAGCTTGAAAAATGATCTTACATTGTGGGATGGAGG
GAGTGCTTGGTTTTGATTCCTTTACTTATCTTGTTCTCTTTGATAAATAGCAACTTAGACGGAGTATGTATATGCTGATT
CCAAATAGATCAACCTA-TGTCCGCATTAGTTGGGGTGG-GTTTACTTGGCAAACGCTTTATTGTTTTCTGCATTGACTC
CACATGGTTATTGGCTTACTAGTTAGTGTACTGCTGATGAGGCTCAGCCTTTTTGTACT--TATAAGGTCACTGTGTAGC
TATAATACTTATCTGTTATCAGTACCTTCATAGTAATCAATGATGCTCTTGTCCCCTATAGGACGAGGAACTAAAGAGAG
GTGAGGTGGAGGCTGACAAAGATAAAATGATGAGAGAGTATAGAGCTCAACTGGATGCTGAAAGGGCCCAAAAGCTTGGT
CGTGGAAGAGACGTCGTAAAGTCAAAATCATCATCTTCCAAGAAAGGTAAATCAACTTAATGACGTGCTGAACGATGTTT
CTTACATTTAGGTCCCATTAGGTGA-ACTCTTTCTTAAATCTATTCCATGTGTTGAGTTTTCTGACAAAGAATTATGGAT
ACAGAAAAGAAGGAAAAGGACGCAAAGAAACGGATTAAAAAGAGGAGGAAGGTATTGCTCTCAAATACAAATGTAATAAT
TGGCCACATTATGATGAATGGAAAACACCAAAAA-TATCCGCTATATAAATGACTCTAGATATAAACATT-TTTTTACCT
TCTCCTGTTGGGATGAATTTGGGAAACAAAAATGGTCCTACTTGCTCACTTCTGCATTCTTACAGCACAGAAGTTCGTCA
GAAAGTTCCAGCTCATCAGAATCATCAAGTAGTGATGATGAGGACAGGGGTTCAAGAAAATCCCGATCCCGATCAAGATC
AAAGCGAAGTAAGAAAGATAAGAAGCACAGGTCCCGATCCAAGCATGCCGGAAGTGACAGCGAGGAGGAAGGCCCTGTTC
GCCTCTCGAAATTCTTTGGGAATGCAAAGAACTAGATGCTATATCGATACGCCCAATACCAATTTGCTTGCTCCTGAGGT
CATATCATTTTGAATCGTCAATTGGTGGGTGTTGATTGTATTCTATTGAGATGACTCTCAGAAGGTTGTGGGAACCAGTT
TCTGTGTTGTT---TCTCAACAGAATGTTTGGTAACTGGAGGTTTAGGTGTTGAACCATTATATGGTATCCTGCAACTTG
TAAGAAATGTCAAATCATTGTTACATTGTTGTACTTGATGGATAGTGACAGTATTCATATTCGATTTGAACTGCTTTAAT
TCTTT-CAGAACTTGATATTTAAATTATTATCTTTCTTTGGCTGATCTTTAGATCTA--TTATGAGAATCGGCTTCTCTG
TTGGTGTATTTGCTGTGAGCTATGAAAAATACAGTCCCCTCCGTCTCTATGTTTGATTAAATTCACTG-AAAAATATATT
AACATGTA------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-
>chr3D_915
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------------------AGGGAGGAAAAAGAGATCTCCACTCCACTCTGCCTCCCCCTCTCCCTCCGCC
CCGCGCGGTTCCAATCTGGTTCCCGGGCCAGGAATCGAGGATGGGGAAGAACCAGGCGTACAAGGCGATGCAGTGGGCGC
GGCTGGGTTCGTCCTCCGGCGCCTCTCGGCGAAGGGGAGGAAGACGGCATGGTCAGGCCCCTTCCTCACCTCCCCTCACC
ACAGATACTTAATCTCGCGTCACCACCCTTACTTCCAAGCTCACA---ATCCACCTCTGATTGTT-CCCCCCG--CAAAT
CCTATTAAGATCTTCCGGAACGTCCATGTCGAATCTTGCTGTTTGTAGGTGCTATTCTTTCCCTTCTG---ATGAGGGGA
CTTTTACTAACGAGGGCCGTCACAGCCGGACGGTTCATTTCATTCTCCAGAGTGGCACGCGGTGCGCTTGGTCAGCCTCA
ACAAGACCCATACCCTCACGTGGGAAGAGTTC---AAGAAGGAGAAGGTATGTGCGGCGGCCCTCGACTCGCTCTCTGCT
GGC-TTTCTTGGTGGA-TTTAGTTTCTTCACTCTGTAATTTTGTGTGTCCTATCCACGGTTTTATCCATGCTGCTGCACT
GCTGCTTAAGCTCTGCGATGTGTTATTTGTGCTCCTATTTTATACTATTAATGTATGATGGATGCTGAATTTCAAGCATA
CTGCCTTGTATGTGATG---------------------------------------------------------------
--------------------------------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------S-------S----------------
------------S-------------------------SS---S-------------------S-----S----S-----
-----------------------------------S----------------------------S---------------
--------------------------------------S------------------------S-S--------------
-S-----------------------S--------------------------------------S---------------
---------------------------------------S----------------------S---S-------------
------------S-------------S------------------------------------S--SSS--------S--
---------S--------------------------------S-----------S-----------------SSS-----
S--S--------SSSS------------S----S--------------------------------S-S-----------
----------------S---------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------SSSSSS--------------------------S---------------------
------------------------S-------------------------------------------------------
----S-----------------S---------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------SSS------S------------S------------
------S------------------------------------------------S----S-------SSS---------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---S-------------------------S--------------------------------------------------
--------------------------------------------------------------S-----------------
-----------------------------------------------------S------------------S-------
--------------------------------------------------------------------------------
S------------S---------------------------------------------------------S-------S
----------------------S-------------SS---------------------S--------------------
--------------S-----S--S-S------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------SS-------S----------------------------------------
--------------------------S-----SS-------------------------------------------S--
-------------------------------------S-------------------------------S----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
S----------------S--------------------------S-----------------------------------
--------------------------------------------------------------------------------
---------S------------------------------------------------------------S---------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------S-------------------------------
-----------------------------------------------------------------------S--------
--------------------------------------------------------------------------------
-----------SSS---------------S--------------------------------------------------
-------------------------------------------------------S------------------------
-------------------------------S-S-------S---------------S----------------------
--------------------------------------------------------------------------S-----
----S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
S
>forward_548
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------CCCTTGCTCAATCCGACCTG------------
--------------------------------------------------------------------------------
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-
>reverse_2192
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------CGGGGTGGGGTTTACTTGG------------------------------
--------------------------------------------------------------------------------
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-
>forward_1248
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------CTAGTTCCAAGCTCGCAGCA--------------------------------
--------------------------------------------------------------------------------
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-
>reverse_3009
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------GGGAAGTGACAGCGAGGAG-------------
--------------------------------------------------------------------------------
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-
>forward_1734
--------------------------------------------------------------------------------
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----------------------------------CTGGTGTGGAATGGCGATTG--------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-
>reverse_3230
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------CGGTAACTGGAGGTTTAGGTGT-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-
