>input_sequence_42069
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----ATGGCGGTTCCTCTGGTGCTCATGCTCTTGGTCGCCATGTTCACCGGCTCAGGTCAGCGGCCCCGACTA------C
TGGCTCTGCGCAAACATAGTAGTTTTGCCTGC-CTAGATTGAGTTCCTAGGTTTCTTTCTTTTCCATGCACTCCCCGGAC
CTGAATCTTTCTTGCTCTAGAGCACTT-------------------------AATAAACTTTCCTT----GTATGTTCTT
GAAATCTTT-TGTCTCTAGA-----TCAGGGA----------TGTTGTTGCTATTTGTGCCCAGTTTCCCCCATTTTTCT
CCATAGCTGTAGATAGAAGAAGAAAGATTTATTTCCTTGCTAGATATAGATTCGATTCGAGGGCTTATTATTGTTGTTTG
TGTGACTGGTGAGGTAGCAGATGCGATGTACTGCGTGTGCAAGTCGGACGCGAACCCGGTGGCGATGCAGAAGGCCATCG
ACTACGCGTGCGGCAAGGGCGCCGACTGCACCCAGATCACCTCCAGCGGGCCCTGCTTCCAGCCCTCCTCCGTCGTCGCC
CACTGCTCCTACGCCTGCAACAGCTACTACCAGAAGAACGCCGGCATGGGCGCCACCTGCGATTTCATGGGCGTCGCCAC
CCTCACCGGCGCCGACCCCAGCGCCGGATCCTGCAAGTACCCCGCCAGCGCTAGGTAACCA--CCCTCCCATCTACTACT
ACTTGTACTCCCACATGCCTCCCTCACATGCTTGCTTGGCTTGGAGCATGCTTACTACTCTACTAGATCAGTGAATCTGT
TTATTAAAGGATTTGGGGGCATTTCCCTTTTAATACTCCTGATTCGTG-----TACTTGAATCTGGGAAGTAGAGCATCT
-------TAAGCGAAATGCGGTATGGGCTCTGACTGACTGCCCCTGACTGGTGTCATGAGTCGCTGCGCATAGTTTACTT
GGTG-----TTATTAGTGCGCCGTAATCTAGATTCTTCACACGGCCGCACATACACCACGTACACACATGATAGTTAATT
CAACGGGGCCTTG-CTAGTTCAGGGTTCATGGTTACCAGAGTTACCGAGCG---CTACCAGTATACTGAAGTGTGCAC--
-TACCATGTTTCAGTTTGCAATATGCAAACACAAAGCTGATCTGAAAAATCATTGGCAAAAGCTGTCAAAGTAGATTCGG
GGAATATGTGCCGTGCCCACTAATGATGCACGAATATTACAGTACATCTGCAGCTAAACAACATA---TGCATCTTCACA
---TAGTAGTACCACTACTGATGAACACTCTAGTAGCTGT--GTGTTCTCCCTTT--GGTACTGTTCTTGAGTTCTTGCT
TT-GCCCATGTGAAGC-AAAAGGTGTCTGAATCGGATATTTCTAGTCCGAGCTTAAAGGGAGGTCCATCTTTCTCCGAAT
GCCACCCGTTCAAAGTTGCATTGAACCTGGGCAAGCGCGTCGGCATCATTGCATCTGCATTATATATGCAATAGATAGAT
TGGAAGCAACTTTCTCGCTTTTCTGAAGATGGGACGTGTGAAACATTTCGCCGTGCAATGTACTG-ACTGACCGACGCTG
TATGTGTGCGCTTTGTGTACGTTTCT----TTGTGCAGCGGCGTCGGCACTGGAGCAGGCACCGGCACCGGCGGCATGGG
AACCGGCGGCACAGGGACAGGCACCGGAGGCATGGGAACCGGCACCGGAACCAGCACCGGAACGGGCACGGGCGTCGGCA
CCGGCACCAGCACCGGCGGCATGGGGAGCATGACCCCGCCGGGCGCGACCAGCACCGGGATGCCGGGGAGCCCCTTCGGC
GGCGGCGCGTACGGCCCGTCTGGCATGAACCAGGACTACAGCGCAGCCGTGGTCGGTCGCCGCGTGGCCGCCGCGGGGCT
CCTCGTGGCGGCAGCCGCGCCGCTCCTCCTCCACTTCATCTGA-------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------------------
>chr1D_1_TraesCS1D01G335200
GCATAGTGATTG---TTTTGAACAAATAACTGTAGTGCCTTTGTCAGCATGTTAGATATAGGTCCCTACCACTCACAAGG
AACAAGCCATTTTTGCCATGTACACGACGGGCCAGTGCCCAC-------ATGTGAAGGACACA-----CCACACCACGAA
GCAAGAGGACACAGGAAGAGGGTAAACGTCCCATGTGAGAAACACCCAGAAAACGGTCGAC---GCAGGCCATGTGAGAG
CACCGATCATACGGGGAAACAAAAGCGAGCGCAAAAGCACCTCACTCCCCAGCAAGATCGACGTCAAGCCACGCTGGAGT
AGTGCAGAATCTAGTA--GTAATAAAAAGATATATGTCAC-----------AAAAAATAAAGAGCAACAAGTAC--CATC
CGACCGTTAATCCGCACTGCCGACTGGCCGTCACCACTCACTTTAT-TTTTTGACAGTGGCTCACCACCGCATGCACACT
GCGCGAGTAGTAGT-AGTAGTACT-GGTTTGGTGGAGAAATAAAGCCGTCCCGGCCGAGCGCA-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------GCGCAGCAGCACAGTGCCGCATGCCCGCCGCA
TCGGCTCTCTCCCATGCCA---------TGCCGCGCCAAAGCGGGACAGCGCGGCCCAGAGCGCCCTGCACGCCTTTGCA
CGAGCCGCACAGGACGATCCATCCGTCGATGACTCACCACCGCCGCTTGATGCGAGCGA--------AATAAAGCCGTTG
GCATGCGGACACGGCCCGGCTCGTCACCCCGTGGCAAGGACACTGGCGCACGGTCGCACGCCGACGCGTCCAGAGACACC
TCTAACTCCACCTCCAGGGGGCGAGCGAACGAACGGCTCGATGCGGGTTTGTGCGGCCGGTGTTCGCCGATAAAAAGGG-
GCCGCGCTCGGGAGCTTGACCGCACTGCAC--ACTACCACACTCCCCACTCTCCCACGCCACGCCGACTAGCTTCCTCCA
TTACCCTCCTCCT---TTGCTTGCCCAGACCTCGGCGAGGCTCCGGCGAGAGAGCGAGAGCGAAAGCTCCCTTCCGCTGC
TGCAATGGCGGTTCCTCTGGTGCTCATGCTCTTGGTCGCCATGTTCACCGGCTCAGGTCAGCGGCCCCGACTA------C
TGGCTCTGCGCAAACATAGTAGTTTTGCCTGC-CTAGATTGAGTTCCTAGGTTTCTTTCTTTTCCATGCACTCCCCGGAC
CTGAATCTTTCTTGCTCTAGAGCACTT-------------------------AATAAACTTTCCTT----GTATGTTCTT
GAAATCTTT-TGTCTCTAGA-----TCAGGGA----------TGTTGTTGCTATTTGTGCCCAGTTTCCCCCATTTTTCT
CCATAGCTGTAGATAGAAGAAGAAAGATTTATTTCCTTGCTAGATATAGATTCGATTCGAGGGCTTATTATTGTTGTTTG
TGTGACTGGTGAGGTAGCAGATGCGATGTACTGCGTGTGCAAGTCGGACGCGAACCCGGTGGCGATGCAGAAGGCCATCG
ACTACGCGTGCGGCAAGGGCGCCGACTGCACCCAGATCACCTCCAGCGGGCCCTGCTTCCAGCCCTCCTCCGTCGTCGCC
CACTGCTCCTACGCCTGCAACAGCTACTACCAGAAGAACGCCGGCATGGGCGCCACCTGCGATTTCATGGGCGTCGCCAC
CCTCACCGGCGCCGACCCCAGCGCCGGATCCTGCAAGTACCCCGCCAGCGCTAGGTAACCA--CCCTCCCATCTACTACT
ACTTGTACTCCCACATGCCTCCCTCACATGCTTGCTTGGCTTGGAGCATGCTTACTACTCTACTAGATCAGTGAATCTGT
TTATTAAAGGATTTGGGGGCATTTCCCTTTTAATACTCCTGATTCGTG-----TACTTGAATCTGGGAAGTAGAGCATCT
-------TAAGCGAAATGCGGTATGGGCTCTGACTGACTGCCCCTGACTGGTGTCATGAGTCGCTGCGCATAGTTTACTT
GGTG-----TTATTAGTGCGCCGTAATCTAGATTCTTCACACGGCCGCACATACACCACGTACACACATGATAGTTAATT
CAACGGGGCCTTG-CTAGTTCAGGGTTCATGGTTACCAGAGTTACCGAGCG---CTACCAGTATACTGAAGTGTGCAC--
-TACCATGTTTCAGTTTGCAATATGCAAACACAAAGCTGATCTGAAAAATCATTGGCAAAAGCTGTCAAAGTAGATTCGG
GGAATATGTGCCGTGCCCACTAATGATGCACGAATATTACAGTACATCTGCAGCTAAACAACATA---TGCATCTTCACA
---TAGTAGTACCACTACTGATGAACACTCTAGTAGCTGT--GTGTTCTCCCTTT--GGTACTGTTCTTGAGTTCTTGCT
TT-GCCCATGTGAAGC-AAAAGGTGTCTGAATCGGATATTTCTAGTCCGAGCTTAAAGGGAGGTCCATCTTTCTCCGAAT
GCCACCCGTTCAAAGTTGCATTGAACCTGGGCAAGCGCGTCGGCATCATTGCATCTGCATTATATATGCAATAGATAGAT
TGGAAGCAACTTTCTCGCTTTTCTGAAGATGGGACGTGTGAAACATTTCGCCGTGCAATGTACTG-ACTGACCGACGCTG
TATGTGTGCGCTTTGTGTACGTTTCT----TTGTGCAGCGGCGTCGGCACTGGAGCAGGCACCGGCACCGGCGGCATGGG
AACCGGCGGCACAGGGACAGGCACCGGAGGCATGGGAACCGGCACCGGAACCAGCACCGGAACGGGCACGGGCGTCGGCA
CCGGCACCAGCACCGGCGGCATGGGGAGCATGACCCCGCCGGGCGCGACCAGCACCGGGATGCCGGGGAGCCCCTTCGGC
GGCGGCGCGTACGGCCCGTCTGGCATGAACCAGGACTACAGCGCAGCCGTGGTCGGTCGCCGCGTGGCCGCCGCGGGGCT
CCTCGTGGCGGCAGCCGCGCCGCTCCTCCTCCACTTCATCTGATGCGGTGGTGACCACTGGTTGGCCGGCGGAAAGGCGC
GTCGGCAATGCTGGCGGGTGCGACGCCGGATTCGGTGGGCACGCCCC-GCCGCTTTTGTGTCCGGCTCG----CTCTCTC
GCCTGCCTTTCCGGCGTCTGCGTCGTTTTGATGGTTCGATCGGACGTACC---AC---------------------GTCC
ATGAGTGCTAGT---ACTCTTATTAAGCTGACCACCCCATGTGGTGTTTGTACCGGTGCGGGTCGTGGTAGAGTTGATGA
GATCTGGTAGGGGATTCTTTCTTCCTTCTCGTAGCGGTGACGGTGTTCCGAGACATATAATTATGTGTTGTCGTTCCAAC
CTCGTCTGTTTCCATGCCGCTTTTGTGCTGCTAGCTCATGATCAC-----CGCGTCTCGTGTT-GTC-TTGGCGCTGGGC
CTGTCGGTCACGGCCTCGCATCATCTGGCCGTCCCACC-------CGATGCCATGCTCCGTCTTGAGCTTGTTTTGTGTG
TGCATGCACGGTGGAGTTTTGGGGGTTTCCGG----------TGCGGCGGCACATGGAGCTTGGACGGATGTCGGGCAAG
GAGAAATATCGCGGCGATCGAGGTAGGGAGGGAGGGGTCTCGTGCTCGGAGCCAGAGCGCAGAGTCCACTTTGATCTGGA
CTCTTGTCTGTGGCGCGCGCACTACTGTACTCCTCGAGCGAGCGGGACACGCCGACACCGACACAGGAAAGGCTCACGAG
GCGCCCCACTGTGCTGCCTCTGATCTCCTCGGGGGCCGCGCGGTTCGTGACGGGACCAG-CGCGGGCGCAGCCAGGTGGG
GGCACGGGAGTGGGGTGCGGGGGCGGTGGTCTTGGGCGCGGCCTGGGCCAACGCATGGAAATATCGACGGGCATGGCGTT
GTGTGCCTTGGAGGTGGCCTGTTGTTGCCTTGGGCGCGGCCTGGGCCAACGCATGGAAATATCTGGGTCTCTCGGGCCCT
TGTGCTCGCCTCTCGTTGAGCGTGGGCTGGTGTCGTGCCTTGGAGGTGGCCTGTTGAGCC
>chr1A_1
GCATAGTGATTACTATTTTGAACAAATAACTGCAGTGCATTTGTAAACATGTTAGACATAGGTCCCTACCACTCACAAGG
AACAAGCCATTTTTGCCATGTACACGACGGGCCAGTGCCCACTGCCCACATGTGAAGGACACAGCAAACCAT-----GAA
GCAAGAGGACACAGGAAGAGGGTAAACGTCCCATGTGAGAAACACCCAGAAAACAGTCGACGCATCAGGCCATGTGAGAG
CACCCATCATACGGGGAAACAAAAGCGAGCGCAAAAGCACTTCACT----------------GTCAATCCACGCTGGACT
AGTGCAGAATCTAGTA--ATAAAAAGATGG-------------------AGCAAAAATAAAGAGCACCAAGTACACCATC
CGACCGTTAATCCGCACTGCCGACTGGCCGTCACCACTCGCTTT--ATTTTTGACAGTGGCTCACCACCGCATGCACACT
GCGCGAGTAGGAGT-AGTAGTACTGGGTTTGGTGGAGAAATAAAGCCATCCCGGGCGAGCGCAGGAGGGCAAATTTTCGT
ATTTTGATAAACCTATTCGAGATTTGATCCTATTTTAATTTTTTTCGAGATTTAACCCTTTTGCTACCGTCAGAGTTCAT
GACGGTAGGGTCTAATAGCCTACCGCCATAGACTTTGACGGTAGGAAACATTGCTACCGCCAACCGGGCTCTCTGGCGGT
AGGGTTGTGCAGGCTATCGTCAAGGTGCTTTGCGGTAGGCATGAGCACGCAATGTGTTCAATACTTAGGAGTTTTTTTGG
CGATAGGGCATGCAACCCTACCGTCATGGTCTCTTGCGGTAGCAAAAAAGACAGATCTCAAAAAAAATTCAAACTAAGAT
CGAATCTTAAATATGTTTTAGAAAATGGTCAAAACACGAAATTTAGCCGCGCAGGAGCACAGTGCCGCATGCCCGCCGCA
TCGGCCACTCCCAC--CCA---------TGCCGCGCCAAAGCGGGACAGCGCGGCC-AGAGCTCTCTGCACGCCTTTGCA
CGAGCCGCACAGGACGATCCACCC----ATGACTCACCACCGCCGCTTGATGCGAGCGAGCGAGCGAAATAAAGCCGTTG
GCATGCGGACACGGCCCGGCTCGTCACCCCGTGGCAAGGACACTGCCGCACGGTCGCACGCCGACGCCTCCAGAGACACC
TCCACCTCCACCTCCAGGGGGCGGGCCAACGAACGGCTCGATGCGGGCTTGTGTGGCCCGTGTTCGCCGATAAAAAGGGT
GCCGCGCTCGGGAGCTTGACCGCACTGCACACACTACCACACTCCCCACTCTCCCACGCCACGCCGACTAGCCTCCTCCG
TTCCCCTCCTCTCTTCTTGCTTGCTCGGACCT-----------CGGCGAGAGAGCGAGAGCGAAAGCTCCCTTCTGCTGC
TGCAATGGCGGTTCCTCTGGTGCTCGTGCTCTTGGTCGCCATGTTCACCGGCTCAGGTCAGCGGCCC----------AGC
TCGCCCTGCGCAAACATAGTAGTTTTTGACCGTCTAGATTGAGTTCCTAGGTTTATTTCTTTTCCATTCACTCCCTGGAC
CTGAATCTTTCTTGCTCTAGAGCACTTCTTGAATGTCCTATGCAACATCTCCAACAAACTTTCCCTTGTAGTATGTTCTT
GAACTGTTGCTGTCCCTAGA-----TCAGAGATGCTAGATGGTGTTCTTGCTATTTGTGCCTAGTTTTCCCCATTCTCCG
TAACTG-------TAGAACGACAGAGATTTATTTCATTGTCAGATTCGTGAGCTAACC---GGCTTATTATTGCTGTTTG
AGTCGGTG-------AGCAGATGCCATGTACTGCGTGTGCAAGTCGGACGCGAACCCGGCGGCGATGCAGAAGGCCATCG
ACTACGCGTGCGGCAAGGGCGCCGACTGCACCCAGATCACCTCCAGCGGGCCCTGCTTCCAGCCCTCCTCCGTCGTCGCC
CACTGCTCCTACGCCTGCAACAGCTACTACCAGAAGAACGCCGGCATGGGCGCCACCTGCGACTTCATGGGCGTCGCCAC
CCTCGTCGCCGCCGACCCCAGCGCCGGATCCTGCAAGTACCCCGCCAGCGCTAGGTTAATAGCCCCTCCCATCTATGCTC
TTCCTCC-----------------CACATGCTTGCTTGGCTTAGAACATGCTTACCACTCTACTAGATCAATGAAGCTGT
TTAATAATAGATTTACTGGCATTTCCCTTTTAATACTCCTGATTGGATTGGACTACTTGAATCTGGCAAGTATACAGAGT
ATCTTAATAAGCGAGATGCAG--------------GACTGCCCCTGACTGCTGTCACCAGTCGCTCGGCATAGTTTACTT
GGGTTATTCTTATTAGTGCGCCGTAATCTAGATTCTTCACACGGCCGCACATACACCACGTACGCACATGATAGTTCATT
CAGCTAGGTGAGTTACCAG-------------------------------------ACCTGTATACTGAAGTGCGTAGTA
GTACCGTGTTTCAGCTTGCAATATGCAAACACAAATCTGATCTGAAAAATCATTGGCAAAGGCTGTCAAAGTAGATTCGA
GGAATATGTGCCGTGCCCACTAATGATGCACGAATATTACAGTACATCTGCAGCTTAACAACATAGTATGCATCTTCACA
TGGTAGTAGTGCCACTGCTGATGTCCGCTCTAGTAGCTGGACGTGTTCTCCCTTTGGGCTACTGTTCTTGAGTTCTTGCT
TT-GCCCATGTGAACCAAAAAGGCGTCTGAATCGGATATCTCTAGTCCGACCTTAAAGATACACCCGTCTTTCGCCGAAT
GCCACCCGTTCAAAGTGGCATCGGACCTGGGCAAGCGCGTCGGCATCATTGCATCCGCATTATGCAATAGATAGATAGAT
TCCAAGCAACTTTCTCGCTTTCTTGAAGATGGGACGTGTGAGACATTTCGCCGTGCAATGTACTGTACTGACGGACGCTG
TGTGTGCGCGCTTTGTGTATGTTTCTTTCCTTGTGCAGCGGCGTAGGCACCGGAGCA------GGCACCGGCGGCATGGG
CACCGGCGGCACAGGGATGGGCACCGGCGGCATGGGCACCGGCACAGG---CAGCACCGGGACAGGCACGGGCGTC----
--------AGCACCGGCGGCATGGGGAGCATGACCCCGCCGGGCGCGACCAGCACCGGGATGCCGGGGAGCCCCTTCGGC
GGCGGCGCGTACGGCCCGTCGGGCATGAACCAGGACTACAACGCAGCCGCCGTCGGTCGCCGCGTGGCCTCCGCCGGGCT
TCTCGTGGCGGCAGCCGCGCCGCTCCTCCTCCACCTCATCTGATGCGGTGGTGACCACTGGCTGGCCG---------CGC
GTCGGCAAT----GCGGGTGCGGCGCCGGATTCGGTGGGCGCGCCCCCGCCGCTTTTGT-----GCCCG----CTCGCTC
GCCTGCATTTCCG------GCGTCGTTTTGATGGTTCGATCGGACGTACTGGTAGCAGCGTAGTGTGTGTGTGTCTGTCC
ATGAGTAC---TAGCACTCTTATTAAGCTGACCACCCCATGTGGTGTCTGTACCGGTGCGGGTCGTGGTAGAGTTGATGA
GATCTGGTAGGGGATTCTTTCTTCCTTCTCGTAGCGGTGACGGTGTTCCGAGACATATAATTATGTGTTGTCGTTCCAAC
CTCGTCTGTTTGCATGCCACTTTTGTGCTGCTAGCTCATGATCAC-----CGCGTCTCGTGTTTGTC-TTGGCGCTGGGC
CTGTCGGTCACGGCCTCGCATCATCAGGGCGACCCACCCCACCCATGATGCCATGCTCCGTGTTGAGCTTCTTTTGTGTG
TGCATGCACGGTGGAGTTTTGGGGGTTTCCGGTGCGGCGCGCTGCGGCGGCACATGGAGCTTGGACGGATGTCGGGCAAG
GAGAAATATCGCGGCGACCGAGGGAGGGTGGC-----TCTCGTGCTCGGAGCCAGAGCGCGGAGTCCACTTTGATCTGGA
CTCTTGTCTGTGGCGCACTACTGTAGTACAGTACT----------------CCGACACCGACACAGGAAAGGCTCACGAG
GCGCCCCACCG---TGCCTCTCATCTCCTCGGGGGCCGCGCGGTTGTG--------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------------------
>chr1B_18
AACATAG-------------------TAACTGTAGTGCCTTTGTAAACATGCTAGTTATAGGTCCCTACCACTCACGAGG
AACAAGCCATTTTTGCCATGTACACGACGGGCCAGTGCCCAC-------ATGTGAAGGACACA-----CCAT-----GAA
GCAAGAGGACACACGAAGAGGGTAAACGGCCCATGTGAGAAACACCCAGAAAACAGTCGAC---TCAGGCCATGTGAGGG
CACCGATCATACGGGGAAACAAAAGCGAGGGCGAAAGCACTTCACTCCCCAGCAAGATCGACGTCAAGCCACGCTGGCGT
AGTGCAGAATCTAGTACTGTAATGAAAAGATGTATAGACAGAGCAAGGAAGAAAAAATAAAGAGCAACAAGTAC--CATC
CGACCGTTAATCCACACTGCCGACTGGCCGTCACCACCCACTTTACATTTTTGACAGTGGCTCGCCACCGCACGCTGGAC
CGGGCAGCGAGCCGCAGTACTACT-GGTTTGGTGGAGAAATAAAGCCGTCCCCGGCCAAGCGAGAA--------------
--------------------------------------------------------------------------------
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---------------------------------------------------------CACAGTGCCGCATGCCCGCCGCA
TCGGCCACTCCCAC--CCATGCCTGCCATGCCGCGCCAAAGCGGGACAGCGCGGCCCAGAGCTCTCTGCACGCCTTTGCA
CGAGACGCACAGGACGATCCATCCGTCGATGACTCACCACCGCCGCTTGATGCGAGCA--------AAATAAAGCCGTTG
GCATGCGGACACGGCCCGGCTCGTCACCCCGTGGCAAGGACACTGGCGCACGGTCGCACGCCGACGCGTCCAGAGACACC
TCCAGG----------------GGGCGAACGAACGGCTCGATGTGGGTTTGTGTGGCCGGTGTTCGCCGATAAAAAGGG-
GCCGCGCTCGGGAGCTTGACCGCACTGCACACTACTA-ACACTCTCCACTCTCCCACGCCACGCCGACTAGCTTCCTCCG
TTCTCCTCCTCAT---TTGCTTGCCCGGACCTCGGCGAGGCGTCGGCGAGAGAGCTCGACCTCAAGCTCCCTTCCGCTGC
TGCAATGGCGGCCCCTCTGGTGCTCATCCTCTTGGTCGCCATGTTCACCGGCTCAGGTCAGCGGCCCCAATCCCCACAGC
TCGCTCTGCGCAAACATAGTAGTTTTGCCTGC-CTAGATTGAGTTCCTAGGTTTCTTTCTTTTCCATTAACTCCCCAGGC
CTGAATCCTTTTGTTCT---AGCACTTCTTGAAGGTGCTTTGGACA---TCTAACAAACTTTCCTT----GTATCTTCTT
GAAAACTTT-TGTCTCTAGACTAGATCAGAGA----------TGTTCTTGCTATTTGTGCCTGGTTTTCTCCATCCTCCA
GAACTG-------TAGAACAAGAAATATTTATTTCCTTGCTGCTG--------GATTCGAGAGCTTATTGTTGTTTGGTT
GGTGACC-------TAGCAGATGCGATGTACTGCGTGTGCAAGTCGGACGCGAACCCGGTGGCGATGCAGAAGGCCATCG
ACTACGCGTGCGGCAAGGGCGCCGACTGCACCCAGATCACCTCCAGCGGGCCCTGCTTCCAGCCCTCCTCCGTCGTCGCC
CACTGCTCCTACGCCTGCAACAGCTACTACCAGAAGAACGCCGGCATGGGCGCCACCTGCGACTTCATGGGCGTCGCCAC
CCTCACCGGCGCCGACCCCAGCGCCGGATCCTGCAAGTACCCCGCCAGCGCAAGGTTAACCCCCATCTG-----------
---------CCCACATGCCTCCCTCACATGTTTGTTTGGCCTCGAACATGCTTACTACTCTACTAGATCAGTGAAACTGT
TTAATAATAGATTTACGGGCATTTCCCTTTTAATACTCCTGATTGGAG-----TACGTGAATCTGGGAAGTAGTATATCT
-------TAACCGAGATGCAGTATGGCCT----CTGACTGCCCCTGACTGGTGTCATGGGTCGCTGGGCATAGTTTACTT
GGTG-----TTATTAGTGTGCCGTAATCTAGATTCTTCACACGGCCGCACATGAGCCACGTACACACATGATAGTTAATT
CAACGTGCCGTAATCTAGTTCAGGGTTCATGGTTACCAGAGTTACCGAGTAGTACTACCAGCATTCTGAAGTGTGTAGTA
--ACCATGTTTCAGCTTGCAATATACCAACACAAAGTTGATCTGAAAAATCATTTGCAAAAGCTGTCAAAGCAGATTCGT
GGAATATGTGCCGCGCCCACTAATGACAGACGAATATTACAGTACATCTGCAGCTAAACAACATA---TGCATCTACACA
---TAGTAGTACCACTACTGATGAACACTCTAGTAGCTGGA--TGTTCTCCCTTT--GCTACTGTTCTTGAGTTCTTGCT
TTTGCCCATGTGAAGC-AAAAGGTGTCTGAATCGGATATTTCTAGTCCGACCTTAAAGGGCGGTCCATCTTTTGCCGAAT
GCCACCCGTTCAAAGTTGCATTGAACTTGGGCAAGCGCGTCGGCATCATTGCATCTGCATTATATATGCAATAGATAGAT
TCTAAGCAACTTTCTCGCTATTTTGAAGATGGGACATGTGAGACATTTCACCGTGCAATGTACTG-----ACCGACGATG
TACGTGTGCGCTTTGTGTACGTTTCTTTCTTTCTGCAGCGGCGT------------A------GGCACCGGCGGCATGGG
AACCGGCGGCACAGGGACAGGTACCGGCGGCATGGGAACCGGTACAGGAACCAGCACCGGAGCGGGCACGGGCGTCGGCA
CCGGCACCAGCACCGGCGGCATGGGAAGCATGACCCCGCCGGGCGCGACCAGCACCGGGATGCCGGGAAGCCCCTTCGGC
GGCGGCGCGTACGGCCCATC---CATGAACCAGGACTACAGCGCAGCCGTGGTCGGTCGCCGCGTGGCCGCCGCGGGGCT
CCTCGTGGCGGCAGCCGCGCCGCTCCTCCTCCACTTCATCTGATGCGCTGGCGACCACTGGTTGGCTGGCGGAAAGGCGC
GTCGGCAATGCTGGCGGGTGCGACGCCGGATTCGGTGGGCGCGG--CCGCCGCTTTTGT-----GCCCGTTGGCTCGCTC
GCCTGCCTTTCCG------GCGTCGTTTTGAT-GTTCGATCGGACGTACC---AGTAGCCTAGTGTCTGTCTGTCTGTCC
ATGAGTAC---T---ACTCTTATTAAGCTGACCACCCCATGTGGTGTTTGTACCGGTGCGGGTCGTGGTAGAGTTGATGA
GATCTGGTAGGGAATTCTTTCTTCCTTCTCGTAGCGGTGACGGTGTTCCGAGACATATAATTATGTGTTGTCGTTCCAAC
TTCGTCTGTTTCCATGCCACTTTTGTGCCGCTAGCTCATGATCGTGGTGGCGTGTCTCGTGTT-GTCTTTGGCGCTGGGC
CGGTCGGTCACGGCTTCGCATCATCAGGTCGA-----CCCGCCCACGATGCCATGATCC----------------GTGTG
AGCATGCACGGTGGAGTTTTGGGGGTTTGCGGTGCGCCGCGCTGCGGCGGCACATGGAGCTTGGACGGATGTCGGGCAAG
GAAAAATATCGCCGCGATCGAGG--------------TCTGGTGCTCGGAGCCAGAGCGCAGAGTCCACTTTGATCTGGA
CTCTTGTCTGTGGCGCGCACTACTGTAT----CTCGAGCGAGCGGAACACGCCGACACCGACACAGGAAAGGCTCACGAG
GCGCCCCACTG---TGCCTCTGATCTCCTCGGGGGCCGCGCGGTTCATGACGGGACCAGCCGCGGGCGCAGCCAGGTGCG
GGCACGGGATTGGGGGTACCAGGCGGTGGTCTTCGGCGCGGTCTGGGCCAACGCATGGA---------------------
--------------------------------------------------------------------------------
------------------------------------------------------------
>SNPs
-----------S--------------------------------S-S---------------------------------
-----------------------------------------------------------------------SSSSSS---
------------------------------------------------------S---------S---------------
----------------------------------------S---------------------------------------
-------------------------------S---SSSSS----------------------------------------
---------------------------------------------S----------------------------------
----------S-------------------------------------------S-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------S-------------------------
-----SSSSS--SSSS----------------------------------------------S-S---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--S-S------------------S-----------------------------S--------------------------
-------------------------------------------------------------------------------S
--S--------S--------------S--------------SS-------------------------------------
--------------------------------------------------------------------S-SSS-------
-S-----------------------------------------------------------------S------------
------------------------------------------------------S-------------------------
-----------------------------S----------------S--------------S-----S-------S-S-S
SS-SS-SSSSSSS-----S--------------------------SSSSSSS----------------------------
S-------SSSSSS------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------S-----------------
--------------------------------------------------------S-S----------------SSSSS
SSSSSSSSS---------------------------------S--S-----------------------------S----
---S---SS-----SS----------------------------S-S---------------------------SS----
--------------S----S------S--SSSS---------------------------------S-------------
--------------------------------------------------------------------------------
-----S---S-SS------------------------------------SS------------------------S-S--
--------------S----------------------------------------------------------------S
--------------------------------------------------------------------------------
---------------------------------------S------------------S---------------------
--------------------------------------------------S----------------------S------
--------------------------------------------------------------------------------
-SS-------------------S------------------S--------------------------------------
--------------------------------------------S-----S------SSSSSS-----------------
---------------------------S-----------------S----------------------------------
--------------------------------------------------------------------------------
--------------------S-----------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------S------------------SSSSS--S---------S---
-------------SSSSSS-----------------------------------S-------------------------
------S-SSS---------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------S-------------------------------------------------------------
-------------------------S--S--S-----------------------------S--------S---------
--------------------------------------------------------------------------------
-----------------------S----S--SSSSSS-------------------------------------------
------------------S-SSSSS-S-SSSS-------------S----------------------------------
-----------SSS--------------------------------S-------------------------------S-
---------S-----SSSSSS------------S-------S-----------------SSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_157
--------------------------------------------------------------------------------
---------------------------------------------------------TGAAGGACACACCACACCAC---
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>reverse_2335
--------------------------------------------------------------------------------
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--------------AATGCGGTATGGGCTCTGAC----------------------------------------------
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>forward_2206
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------CATGCTTGCTTGGCTTGGAG----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
------------------------------------------------------------
>reverse_3539
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
------------------TGCGTCGTTTTGATGGTTCG------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------
