>input_sequence_41946
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----------------------------------------ATGGATCTTGTAAGTGCTAGCGCGACACCACAGGCTCTAG
GGCTCCTCCTACTCTTCTTCCTCGTCGCCCTGCACCTGGCGGCGTCGAGTTCGGGAGCAGAGAAGCTGCGCAGCAAGCTC
CCATCGCCTCCGTTCAAGCTCCCCGTGATCGGGCACCTCCACCTCGTCGGGTCCCTCCCCCACGTCTCCCTCCGCGACCT
CGCCAGGAAGCACGGCCCCGACGTGATGCTCCTCCGCCTCGGCGCCGTCCCCACGCTCGTCGTGTCGTCCCCTCGCGCTG
CCAAGGCCGTCCTGCGCACGCACGACCACCTCTTCGCGTCCCGGCCGCACTCCGCCGTGGGCGACATCCTCTCCAACGGC
TCCACCAACGTGGCCTTGGCCCCCTACGGCGACTACTGGCGGCGGACCAAGAAGCTCGTCACCACCCACCTCCTCGCCGC
CAGGAAGGTCCGCTCCAACCGCGCCGCCCGCGAGCAGGAGGTGCGGCTGGTCCTGGCCAGGCTACGGGCCGCGGCCGCCG
ATACCGCGCGCACGGCGGTGGACGTGAGCGAGCTCTTCATCTACTTCGCCAACGACGTGGTGTGCCAGGCCGTGCTGGGC
AGGCTCCCCCGGGAGGCCGGCCGGAACCAGATGTTCCGGGAGCTGTTGGAGATCCACTGCAAGCTCTTAGGGGGGTTCAA
CCTGCCGGACTACTTTCCGATCTTGGCGAGGCTGGACATGGTGACCGCCAAGGCCGTGAAGCTGAAGAGAAGATGGGACG
ACGTACTGGACGACCTCATCGACAAGCACGCGAGCAAGATGGCGAATGACGATGAGGAGGAGGACTTCATCGACGTGTTG
CTCTCCGTTCAACAGGAGTACAGCCTGACCAGAGATAACATCAAGGCAATACTAGTGGTACGTACTAGT-----------
----------AGTTCCGTTAATTGGTTTGCAAATTGCACACGTTTCACTCCCAAAGAACTAGGACCCAGATATCCAGGGA
ACGTGAGATTTTTAGCTATGACAAATCAAAGGTTTTTTCATAGCAAATTGTGTTGGTCGAGGATGGTAAATTTATTTGGC
GAGCATGGCAAATCCTCCCCAGTTCATTTGTTGCCATAAAAATTGTCATGCTTGCACGCTAAAATTACCATCCCGCGTCA
ATATAAATTGCCATGATAACGTTAAATTTGCCATGATGCCATGTCTAAGAATCCGATGTCAGATTTTTAGTCTTTCCGAA
TAACTAATTGATTGCTCAAATCTT------------------------------TGCAGGACATGTTTGAAGCCGGGACA
GACACAACTTACATAGCACTCGACTACGCCATGGCTGAGCTGATGCGGAAACCACAGGCAATGGCCAAGCTGCAAGCCGA
GGTGAGAGGGTGCGCCACCAAGGGAAAAGAGATGGTGACCGAGGACGACCTAGGAAGCATGAGCTACCTCAAGGCCGCGA
TGAGGGAAGCGATGCGGCTGCACCCGTCAGGGCCTCTCATGATACCCCACCTCTCCGTGGCGGACTGCGGTGTAGAGGGC
CATACCATACCCTCCGGGACGCGTGTGATCATCAACGTGTGGGCGATAGGCAGGGACGCCGCCAGCTGGAAGGACGCGGA
GGAGTTCGTGCCCGAGCGGTTCATGGAAGAAGCCATGGATGCCACTTGCGACTTGCAGGGAAACGACTTTCGTTTCTTGC
CTTTTGGGTCTGGGCGAAGGATGTGCCCGGGTATAAGCTTCGCTGCCGTCACTTTCGAGATCATTCTGGCCAACCTTGTC
TACCACTTCAACTGGGAGCTACCGGAGGGATCCTCTAGCGTCGATATGACGGAGGAATTCGGGTTTGATGTGCACCGCAA
GGAGAGGCTGCTTCTTGTGCCACGTGTGCCTCACCACCTCTAG-------------------------------------
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>chr4D_1_TraesCS4D01G247200
CATAGGACATTGCACCGTGGGTAGGCAGCTCACAACAACGACGACACTATTCCACACCTAGATATCACACGGTTAGGTAG
GCCGAATTGTGTGCCTGACAAGTTACACAACACGTGATTTTCGTATGGTATGTGATAGCACCAGTGACCTTATCTTGCAC
ATGTTTCTCCAAACGTGTGTGATGTGTGATTTTGGCTTTGTGCATTGTCCGTCGGTATGTGTGTCTCGGTAGCATACTCT
GTGCAACTTCTACTATAAATAGATTATTGATAGTATGCTAGAGTGCCGACTTTAGGAAAAATATTTCATATGTCTTTGTT
TACATAGCGCTCACTTATTCCAAAGTTCGACTTTGATCATCAATTTGATCAATAAAACATGTGTTATACTCCCTTTGTCC
CATAATATAAGATGTTCTTATATTATGGTACGGCGGGGGTAAGTTACAAAATGAATATATCATTTGTCTTCAAATACAAT
CACAAATGCTATATTTTTCATAATATATAATTAATATGTTATTAGTGAAATGGTGGGCCAAAGTTTAATCACGTTTAATG
AGGGTGACATGTAACTATGGAGGGGGGAGTAGTACGCTGCACTGTGTGGGTGGGCAGTGGGCAGCTCATCGCAACACCTA
CGGTGCTCTTGTACTGTTCGCTACAGTGCAACTTATGTACCTTGGCATACTTTTGCACTGGTTTGTACGCTTCATTGCTT
TCGTTCCGGCGGTGAGGACTTATTATGGATTTGGATTTGGCAACGAAAAACAGTCATCTCGGATATGAGTTTCAACCTAG
CATGTCCGGATAGATTAAGATGGGACGAAGGGACGTACACAAGCCGGATTCAATTTGATTTGATTAGTACTCAAATGTGG
TTCTCATAGTCATGTAGGATTAAGATCCAGCATGAGTGGGCAGTTGGCACACATGCACTTTATGTGTATACAAGTACACG
AAGTTGGCACACAAGCACACATGCAGTTCAAGGCAGAGCCATGGATCTTGTAAGTGCTAGCGCGACACCACAGGCTCTAG
GGCTCCTCCTACTCTTCTTCCTCGTCGCCCTGCACCTGGCGGCGTCGAGTTCGGGAGCAGAGAAGCTGCGCAGCAAGCTC
CCATCGCCTCCGTTCAAGCTCCCCGTGATCGGGCACCTCCACCTCGTCGGGTCCCTCCCCCACGTCTCCCTCCGCGACCT
CGCCAGGAAGCACGGCCCCGACGTGATGCTCCTCCGCCTCGGCGCCGTCCCCACGCTCGTCGTGTCGTCCCCTCGCGCTG
CCAAGGCCGTCCTGCGCACGCACGACCACCTCTTCGCGTCCCGGCCGCACTCCGCCGTGGGCGACATCCTCTCCAACGGC
TCCACCAACGTGGCCTTGGCCCCCTACGGCGACTACTGGCGGCGGACCAAGAAGCTCGTCACCACCCACCTCCTCGCCGC
CAGGAAGGTCCGCTCCAACCGCGCCGCCCGCGAGCAGGAGGTGCGGCTGGTCCTGGCCAGGCTACGGGCCGCGGCCGCCG
ATACCGCGCGCACGGCGGTGGACGTGAGCGAGCTCTTCATCTACTTCGCCAACGACGTGGTGTGCCAGGCCGTGCTGGGC
AGGCTCCCCCGGGAGGCCGGCCGGAACCAGATGTTCCGGGAGCTGTTGGAGATCCACTGCAAGCTCTTAGGGGGGTTCAA
CCTGCCGGACTACTTTCCGATCTTGGCGAGGCTGGACATGGTGACCGCCAAGGCCGTGAAGCTGAAGAGAAGATGGGACG
ACGTACTGGACGACCTCATCGACAAGCACGCGAGCAAGATGGCGAATGACGATGAGGAGGAGGACTTCATCGACGTGTTG
CTCTCCGTTCAACAGGAGTACAGCCTGACCAGAGATAACATCAAGGCAATACTAGTGGTACGTACTAGT-----------
----------AGTTCCGTTAATTGGTTTGCAAATTGCACACGTTTCACTCCCAAAGAACTAGGACCCAGATATCCAGGGA
ACGTGAGATTTTTAGCTATGACAAATCAAAGGTTTTTTCATAGCAAATTGTGTTGGTCGAGGATGGTAAATTTATTTGGC
GAGCATGGCAAATCCTCCCCAGTTCATTTGTTGCCATAAAAATTGTCATGCTTGCACGCTAAAATTACCATCCCGCGTCA
ATATAAATTGCCATGATAACGTTAAATTTGCCATGATGCCATGTCTAAGAATCCGATGTCAGATTTTTAGTCTTTCCGAA
TAACTAATTGATTGCTCAAATCTT------------------------------TGCAGGACATGTTTGAAGCCGGGACA
GACACAACTTACATAGCACTCGACTACGCCATGGCTGAGCTGATGCGGAAACCACAGGCAATGGCCAAGCTGCAAGCCGA
GGTGAGAGGGTGCGCCACCAAGGGAAAAGAGATGGTGACCGAGGACGACCTAGGAAGCATGAGCTACCTCAAGGCCGCGA
TGAGGGAAGCGATGCGGCTGCACCCGTCAGGGCCTCTCATGATACCCCACCTCTCCGTGGCGGACTGCGGTGTAGAGGGC
CATACCATACCCTCCGGGACGCGTGTGATCATCAACGTGTGGGCGATAGGCAGGGACGCCGCCAGCTGGAAGGACGCGGA
GGAGTTCGTGCCCGAGCGGTTCATGGAAGAAGCCATGGATGCCACTTGCGACTTGCAGGGAAACGACTTTCGTTTCTTGC
CTTTTGGGTCTGGGCGAAGGATGTGCCCGGGTATAAGCTTCGCTGCCGTCACTTTCGAGATCATTCTGGCCAACCTTGTC
TACCACTTCAACTGGGAGCTACCGGAGGGATCCTCTAGCGTCGATATGACGGAGGAATTCGGGTTTGATGTGCACCGCAA
GGAGAGGCTGCTTCTTGTGCCACGTGTGCCTCACCACCTCTAGATTGGTCATTCACGTCTTGCTGTGGCACCAAATACTG
CAATCTTAGATCAATAATGGCAGATTTTATTGAGCAATGCTACACCTACGAAAGGTTAGGTAAGGAATTTATGTAAATGA
TGATGTGCGTGCTGTGATTGGGGATGGGGGAGAGGATGGGCCCCACCACGATGAAATTCAGGGGGGGTGGGGCAAGAGAA
TTTGTTGGAAGGTTATGTAGGTGTCCAAGGATCACGTAGGTGTAGTATTATTGGATTTTACTCCATTGCTTTCAGTCTGA
GTGGTCATGTGCATATTTATGAAGGGAGCACCTATCCTGGTGCATGAAACTTTTTTTGCATTAGTTGAATTCGTGGATTT
GCATTAGTTGGATCAAAATCAGATGGGTAGCTCCCGTCCTTTCTTCAACCTCCTGCAGTTCATCTTCTTCCTCTTTCTTA
CACCCACCTTCCCCGCCGTATCCACTCCCAAGTCCTAGTAGGATTCCC--T---TTCCTTTTC-GGAGT--GGGAAAG-A
AGGAA----A-GGAGGGAGAGGGAGAAGGAAAGG--G-------GGGGC--CGCCCCCCAC---CCCTTGTCCAATTCGG
TTTGGGCAGGGGGAGGCGCGCGCCACCTCGT-GGCC---C-----------TTCTTCCCTCTCTCTACTAAAGCCCAATA
--AGGCCCATTAACTTCCCCCGGCGAATCCCC-GTAACTCTCCGGTACTTC-AAAAAATACCCGAATTAC-TCGGAACCA
TTCCGATGTCCGAATATAGCCTTCCAATAT-AT----------GAATCTTTACCTCA-------TCCGGGACTCCGAACA
AACTTCGGT-CATCAAATCACAT-AACTCATAATACAAATCGTCATCGAACGTTAAGCGCGCGGACCCTACGGGTTCGAG
AACTATGTAGACATGATCGAGACACATCTCCGGTTAATAACCAATAGCGGAACCTGGATGCTCATATTGGCTCCTACATA
TTCTATGAAGATCTTTATCCGTTAAACAACATAACAATATACGTTATTCCCTTTGTCATCGGTATGTTACT
>chrUn_984
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-----------------------CAGTTCAAGAT--AGCCATGGATCTAGGTGCTATTGCA---ACTCCGCAGTCACTAT
GGCTCGTCCTTCTCCTCTTCCTCATCATCGTGTACCTCGCGACGTCGCGTTCTAGAGCAGAGAAGCTGTACGGCAAGCTT
CCATCGCCTCCATTCAAGCTCCCCTTGATCGGGCACCTCCACCTCGTCGGGTCTCTGCCCCACGTCGCCCTCCGCGACCT
CGCAACGAAGCACGGCCCCGACGTGATGCTCATCCGCCTCGGCGTCGTCCCCACGCTCGTCGTCTCGTCGCCTCGCGCTG
CCAAAGCCGTCCTACGCACGTACGACCACCTGTTCGCGTCCCGGCCGCACTCCCCCGTGGGCGACATCCTCTTCAGTGGC
TCCACCAACATAGCCTTCGCCCCCTACGGCGACTACTGGCGCCAGTTAAGGAAGATCGTCACCACCCACCTCCTCGGCGC
CAGGAAGGTCCGCTCCAACCGCGCTGCCCGTGAGACAGAGTTGCGGCTCGTCCTGGCCAGGGTAAAGGCCGCGATAG---
---CCGCGAGCTCGGCGGTGGACGTTAGCGAGGTCTTCAGCTACTTCGCCAACGACGTGATATGCCAGGCCGTGCTTGGC
AGGCTGCCCCGGGAGGCGGGCCGGAACAAGATGTTCCGGGAGCTGCTGGAGATTAACTCCAAGCTCCTAGGTGGGTTTAT
ACTCACCGACTTCTTCCCCAGCCTTGCAAGGCTGGACATGGCGTCCGGCAAGGCGGTGAAACAGAAGAAAATATGGGACG
ACCTGCTGGACGACCTCATCGACAAGCATGCGAGCAAGACGGTGATGGACGAGGACGAGCAAGACTTTATCGACGTCTTG
CTGTCTGTTCAACAAGAGTACGGCTTGACCAAAGATAACATCAAGGCAATACTCATGGTATGCACTATGCAGAT----CG
ATCGAGTTCCACTTCCATTAATTAATTCGCACAAGTTTTCTATTTATAATTT----------------------------
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------------TACTCAAATTTCTGACTGATATTTTATGTACAAACTAATCGATGCAGGACATGTTTGAAGCTGGGACC
GACACAACGTACGTATCGCTCGACTACGCCATGGCTGAGCTGATGCGGAACCCACGCGTGATGACCAAACTGCAAGCCGA
GGTGAGGAGCTGCGTCACCAAGGGCAAAGAAATGGTCACCGAGGAAGACCTTGCAAGCATGAGCTACCTCAAGGCCGTGA
TGAAAGAGGCCATGCGGCTGCACCCGTCCGGGGCTCTCTTGATACCCCACCTCTCCGTAGCCGACTGCGATGTAGAGGGC
TACACCATACCCTCCGGGACGCGCTTAATGGTCAACGCGTGGGCTCTAGGCAGGGACCCCACCTGCTGGGAGAATGCGGA
GGAGTTCGTGCCCGAGCGGTTCTTGAAAGGAGCCATGGATGCCGCTTGCGACTTCCAGGGGAACGACTTCCGTTTCTTGC
CGTTTGGGTCTGGCCGAAGGATATGCCCGGGCATAACCTTCGCCGCCGTCACATTCGAGATCATTCTCGCCAACCTCATC
TACCACTTCAACTGGGAGCTGCCAGAGGGGTCCCCAGGCGTCGATATGACGGAGGAATACGGGATCGATGTGCATCAGAA
GGTGAAGCTGCTTCTTGTCCCACG--------------------------------------------------------
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>chrUn_984
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-----------------------CAGTTCAAGAT--AGCCATGGATCTAGGTGCTATTGCA---ACTCCGCAGTCACTAT
GGCTCGTCCTTCTCCTCTTCCTCATCATCGTGTACCTCGCGACGTCGCGTTCTAGAGCAGAGAAGCTGTACGGCAAGCTT
CCATCGCCTCCATTCAAGCTCCCCTTGATCGGGCACCTCCACCTCGTCGGGTCTCTGCCCCACGTCGCCCTCCGCGACCT
CGCAACGAAGCACGGCCCCGACGTGATGCTCATCCGCCTCGGCGTCGTCCCCACGCTCGTCGTCTCGTCGCCTCGCGCTG
CCAAAGCCGTCCTACGCACGTACGACCACCTGTTCGCGTCCCGGCCGCACTCCCCCGTGGGCGACATCCTCTTCAGTGGC
TCCACCAACATAGCCTTCGCCCCCTACGGCGACTACTGGCGCCAGTTAAGGAAGATCGTCACCACCCACCTCCTCGGCGC
CAGGAAGGTCCGCTCCAACCGCGCTGCCCGTGAGACAGAGTTGCGGCTCGTCCTGGCCAGGGTAAAGGCCGCGATAG---
---CCGCGAGCTCGGCGGTGGACGTTAGCGAGGTCTTCAGCTACTTCGCCAACGACGTGATATGCCAGGCCGTGCTTGGC
AGGCTGCCCCGGGAGGCGGGCCGGAACAAGATGTTCCGGGAGCTGCTGGAGATTAACTCCAAGCTCCTAGGTGGGTTTAT
ACTCACCGACTTCTTCCCCAGCCTTGCAAGGCTGGACATGGCGTCCGGCAAGGCGGTGAAACAGAAGAAAATATGGGACG
ACCTGCTGGACGACCTCATCGACAAGCATGCGAGCAAGACGGTGATGGACGAGGACGAGCAAGACTTTATCGACGTCTTG
CTGTCTGTTCAACAAGAGTACGGCTTGACCAAAGATAACATCAAGGCAATACTCATGGTATGCACTATGCAGAT----CG
ATCGAGTTCCACTTCCATTAATTAATTCGCACAAGTTTTCTATTTATAATTT----------------------------
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------------TACTCAAATTTCTGACTGATATTTTATGTACAAACTAATCGATGCAGGACATGTTTGAAGCTGGGACC
GACACAACGTACGTATCGCTCGACTACGCCATGGCTGAGCTGATGCGGAACCCACGCGTGATGACCAAACTGCAAGCCGA
GGTGAGGAGCTGCGTCACCAAGGGCAAAGAAATGGTCACCGAGGAAGACCTTGCAAGCATGAGCTACCTCAAGGCCGTGA
TGAAAGAGGCCATGCGGCTGCACCCGTCCGGGGCTCTCTTGATACCCCACCTCTCCGTAGCCGACTGCGATGTAGAGGGC
TACACCATACCCTCCGGGACGCGCTTAATGGTCAACGCGTGGGCTCTAGGCAGGGACCCCACCTGCTGGGAGAATGCGGA
GGAGTTCGTGCCCGAGCGGTTCTTGAAAGGAGCCATGGATGCCGCTTGCGACTTCCAGGGGAACGACTTCCGTTTCTTGC
CGTTTGGGTCTGGCCGAAGGATATGCCCGGGCATAACCTTCGCCGCCATCACATTCGAGATCATTCTCGCCAACCTCATC
TACCACTTCAACTGGGAGCTGCCAGAGGGGTCCCCAGGCGTCGATATGACGGAGGAATACGGGATCGATGTGCATCGGAA
GGTGAAGCTGCTTCTTGTCCCACG--------------------------------------------------------
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>chrUn_984
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-----------------------CAGTTCAAGAT--AGCCATGGATCTAGGTGCTATTGCA---ACTCCGCAGTCACTAT
GGCTCGTCCTTCTCCTCTTCCTCATCATCGTGTACCTCGCGACGTCGCGTTCTAGAGCAGAGAAGCTGTACGGCAAGCTT
CCATCGCCTCCATTCAAGCTCCCCTTGATCGGGCACCTCCACCTCGTCGGGTCTCTGCCCCACGTCGCCCTCCGCGACCT
CGCAACGAAGCACGGCCCCGACGTGATGCTCATCCGCCTCGGCGTCGTCCCCACGCTCGTCGTCTCGTCGCCTCGCGCTG
CCAAAGCCGTCCTACGCACGTACGACCACCTGTTCGCGTCCCGGCCGCACTCCCCCGTGGGCGACATCCTCTTCAGTGGC
TCCACCAACATAGCCTTCGCCCCCTACGGCGACTACTGGCGCCAGTTAAGGAAGATCGTCACCACCCACCTCCTCGGCGC
CAGGAAGGTCCGCTCCAACCGCGCTGCCCGTGAGACAGAGTTGCGGCTCGTCCTGGCCAGGGTAAAGGCCGCGATAG---
---CCGCGAGCTCGGCGGTGGACGTTAGCGAGGTCTTCAGCTACTTCGCCAACGACGTGATATGCCAGGCCGTGCTTGGC
AGGCTGCCCCGGGAGGCGGGCCGGAACAAGATGTTCCGGGAGCTGCTGGAGATTAACTCCAAGCTCCTAGGTGGGTTTAT
ACTCACCGACTTCTTCCCCAGCCTTGCAAGGCTGGACATGGCGTCCGGCAAGGCGGTGAAACAGAAGAAAATATGGGACG
ACCTGCTGGACGACCTCATCGACAAGCATGCGAGCAAGACGGTGATGGACGAGGACGAGCAAGACTTTATCGACGTCTTG
CTGTCTGTTCAACAAGAGTACGGCTTGACCAAAGATAACATCAAGGCAATACTCATGGTATGCACTATGCAGAT----CG
ATCGAGTTCCACTTCCATTAATTAATTCGCACAAGTTTTCTATTTATAATTT----------------------------
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------------TACTCAAATTTCTGACTGATATTTTATGTACAAACTAATCGATGCAGGACATGTTTGAAGCTGGGACC
GACACAACGTACGTATCGCTCGACTACGCCATGGCTGAGCTGATGCGGAACCCACGCGTGATGACCAAACTGCAAGCCGA
GGTGAGGAGCTGCGTCACCAAGGGCAAAGAAATGGTCACCGAGGAAGACCTTGCAAGCATGAGCTACCTCAAGGCCGTGA
TGAAAGAGGCCATGCGGCTGCACCCGTCCGGGGCTCTCTTGATACCCCACCTCTCCGTAGCCGACTGCGATGTAGAGGGC
TACACCATACCCTCCGGGACGCGCTTAATGGTCAACGCGTGGGCTCTAGGCAGGGACCCCACCTGCTGGGAGAATGCGGA
GGAGTTCGTGCCCGAGCGGTTCTTGAAAGGAGCCATGGATGCCGCTTGCGACTTCCAGGGGAACGACTTCCGTTTCTTGC
CGTTTGGGTCTGGCCGAAGGATATGCCCGGGCATAACCTTCGCCGCC---------------------------------
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>chr1D_984
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-----------------------CAGTTCACGAT--AGCCATGGATCTAGGTGCTATTGCA---ACTCCGCAGTCACTAT
GGCTCGTCTTTCTCCTATTCCTCATCGTCGTGTACCTGGTGACGTTGAGTTCTAGAGCAGATAAGCTGTACAACAAGCTC
CCATCGCCTCCGTTCAAGCTCCCCTTGATCGGGCACCTCCACCTCGTCGGGTCCCTCCCCCACGTCGCCCTCCGCGACCT
CGCCAGGAAGCACGGCCCCGATGTGATGCTCATCCACCTCGGCGTCGTCCCCACGCTCGTTGTCTCGTCGCCTCGCGCTG
CCAAGGCCGTCCTACGCACCTACGACCACCTGTTCGCATCCCGGCCACACTCCCCCGTGGGCGACATCCTCTTCAGTGGC
TCCACCAACATAGCCTTCGCCCCCTACGGCGACTACTGGCGCCAGTTAAGGAAGATCGTCACCACCCACCTCCTGAGCGC
GAGGAAGGTCCGGGCGAACCGCGCTGCCCGCGAGATGGAATTGCGGCTGGTCCTGGACAGGGTAAAGGCCGCGACAG---
---CCGCGAGCTCGGCGGTGGACGTCAGTGAGGTCTTCAGCTACTTCGCCAACGACGTGATATGTCAGGCCGTGCTTGGC
AGGCTCCCCCGGGAGGCGGGCCGGAACAAGATGTTCCGGGAGCTGTTGGAGATCAATTCCAAGCTTCTAGGGGGCTTTAT
ACTAACCGACTTCTTCCCCAGCCTTGCAAGGCTGGACTTGGTGTCCCGCAAGGCCGTGAATCAGAAGAAAATATGGGACG
ACCTGCTGGATGACCTCATCGACAAGCACGCGAGCAAGATGGTCACGGTCGAGGATGAGCAGGACTTTATCGACGTCTTG
CTCTCCGTTCAACAAGAGTACGGCTTGACCAATCATAACATCAAGGCAATACTCATGGTATGCACAATGCAGATCGATCG
ATCGAGTTCCACTTCCATTAATTAACTCGCACATGCTTTCCATTTATAGTTG----------------------------
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------------TGCTCAAATTACTGACAGATATTTTACGTACCAACTAATCGATGCAGGACATGTTTGAAGCCGGGACA
GACACAACGTACGTATCACTTGACTACGCCATGGCTGAGCTGATGCGGAACCCAAGGGTAATGACCAAGCTGCAAGCCGA
GGTGAGGAGTTGCGTGACCAAGGGCAAAGAAATGGTCACCGAGGAAGACCTTGCAAGCATGAGCTACCTCAAGGCCGTGA
TGAAAGAAGCGATGCGTCTGCACCCGTCGGGGGCTCTCTTGATACCCCACCTCTCCGTAGCCGAATGCGATGTAGAGGGC
TACACCATACCCTCTGGGACGCGCTTAATGGTCAACGCGTGGGCTCTAGGCAGGGACCCCACCTGCTGGGAGAATGCGGA
GGAGTTCATGCCCGAGCGGTTCATGGAAGGAGCCATGGATGCGGCTTGCGACTTCCAGGGGAACGACTTCCGTTTCTTGC
CGTTTGGGTCTGGGCGAAGGATATGCCCGGGCATAACCTTCGCCGCCGTAACATTTGAGATCATTCTCGCCAACCTCATC
TACCACTTTGACTGGGAGCTGCCCGAGGGGTCCCCGGGCGTCGATATGACGGAGGAATACGGGATCGATGTGCATCGGAA
GGTGAAGCTGCTTCTTGTCCCACGCGTGGCTCACGACCTCTAGATTG---------------------------------
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>chr5D_3333
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-----------------------ACTCCCAAGTCCTAGTAGGATTCCC--T---TTCCTTTTC-GGAGT--GGGAAAG-A
AGGAA----A-GGAGGGAGAGGGAGAAGGAAAGG--G-------GGGGCCGCG-CCCCCAC---CCCTTGTCCAATTCAG
TTTGGGCAGGGGGAGGCGCACGCCGCCTCGT-GGCC---C-----------TTCTTCCCTCTCTCCACTAAAGCCCAATA
--AGGCCCATTAACTTCCCCGGCGA--ATTCC-GTAACTCTCCGGTACTCC-GAAAAATACCCGAATCAC-TCGGAACCA
TTCCGATGTCTGAATATAGCCTTCCAATAT-AT----------GAATCTTTATCTCA-------TCTTGGACTCCGAAC-
AACTTCGGT-CATCAAATCACAT-AACTCATAATACAAATCATCATCAAACGTTAAGCGTGCGGACCCTACGGGTTCGAG
AACTATGTAGACATGACCGAGACACATCGCCGGTCAATAACCAATAGCGGAACCTGGATGCTCATATTGGCTCCTACATA
TTCTACGAAGATCTTTATCGGTCAAACCGCATAACAACATATGTTATTCCCTTTGTCATCGGTATGTTACT
>chr6B_3333
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-----------------------ACTCCCAAGTCCTACTAGGATTCCCCTT---TTCCTTTCT-GGAGT--AGGAGAG-A
AGAAAGAGGG-AAAGAGAGAGGGAGTAGGAAAGG--GCAAGGGGGGTGGTGCC-CCCTTTC---CCCTAGTCCAATTCGG
ACCCATGGGGGAGGGCGC--CTCCTTCCCTT-TGGC---C-----------TGCCTCCTCTATTCCCGTATGGCCCAATA
--AGGCCCAATACTTCTGCCGGCGA--ATTCCCGTAACTATCTGGTGCTCT-GAAAAATATGCGAATCAT-TCAGAACCT
TTCCGATGTCCGAATATAGCCTTCCAATAT-ATCGGTCC----------TTACCTCA-------AACGGGACTCTGAACA
AACTTCGGT-CATCAAATAACAT-AACTCATAATACAAATCGTCATCGAATGTTAAGCGTGCGGACCCTACGGGTTCGAG
AACTATGTAGACATGACCGAGACACATCTCCGGTCAATAACCAATAGCGGAACCTGGATGCTCATATTGGCTCCTACGTA
TTCGACGAAGATCTTTATCGGTCAAACCGCATAACAATATACGTTGTTCCCTTTGTCATCAGTATGTTACT
>chr6D_3346
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------------------------------------AGTAGGACTCCC--TCCCTTCCTTGTT-GGATTAGGAGAAGG-G
GGGAA----A-GAGGAGAGAGAGAGGAAGGAAAGGAG-------GGGGCGCCG-CCCCCCC---TCCTTGTCCAATTCGG
ACTAGTGGGGGAGGGGGC--GCGCGGC------------CTGCCCTAGCCGCCTCTCCTCTTCTCCACTAAGGCCCATGA
--AGGCCCATTAAACCCCCGGGGGG--TTTCG-GTAACCTCCCGGTACTCCGGTA-TATATCCGATAACCCCCGAAACCA
TTCCGGTGTCCGAATATAGTCGTCCAATAT-ATATG----TCCGTG-----ATCACA-------TCCGGGACTCCGAACT
ACCTTCGGTACATCAAAACATATAAACTCATAATATAACTGTCATCGAAACTTTAAGCGTGCGGACCCTACGGGTTCGAG
AACTATGTAGACATGACCGAGACACGTCTCCGGCCAATAACCAATAGCGGAACCTGGATGCTCATATTGGCTCCCACATA
TTCTACGAAGATCTTTATCGGTCAAACCGCATAACAACATACGTTGTTCCCTTTGTCATCGGTATGTTACT
>chr2D_3355
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---------------------------------------------CCC--T---TTCCTATTC-CTACT--AGGAGAAGG
CGGAA----A-GAGGAGGAGGGAAGAAGGAAAGA--G-------GGGCC--CG-GCCCCCCAAACCCTAAACCAATTCGG
TTTGGGCCAAAGGGGGGG--GCGCCCCACACCTTGCTTGCTGCCCTTT------------TTCTCCACTAGGGCCAAATA
--AGGCCCATAGACTCCCCGGGGGG--TTCCG-GTAACCTCCCGGTACTCTGAAA-AATACCCGATACACTTCGGAACCT
TTCCGGTGTCCGAATATAACCTTCCAATAT-ATCAATCTTTCCGTG-----ATCTCA-------TTCGGGACTCCGAACA
ACCTTCGGTACATCAAATCACAT-AACTCATAATACAAATCGTCATCGAACGTTAAGCGTGCGGACCCTACGGGTTCGAG
AACTATGTAGACATGACCGAGACACATCTTCGGTCAATAACCAATAGCGGAACCTGGATGCTCATATTGGCTCCTACATA
TTCTACGAAGATCTTTATCGGTCAAACCGCATAACAACATACGTTGTTCCCTTTGTCATCGGTATGTTACT
>chr1B_3358
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--------------------------------------------------T---TTCCTTTTCTGGAAT--AGCAAAGAG
GGAAA----GAGAGGAGGAATAGGAGAGGGAAAG--G-------GGGGG--CG-CCCCCGC---CCCTTGTCCAATTCGG
GTTGGCAAGGGGG--GCACGCGCCACCTCAC-TGGC---C-----------CGTCCTCTCTCCTCCACTAAGGCCCATGT
GTGGCCCATTAACTTCCCTGGGGGG--TTCCG-GTAAC-TCCCGGTACTCCGAAA-CCTACCCGATACTTCCCGAAACCA
TTCCGGTGTCTGAATATAACCTTCCAATAT-AT----------GTG-----ACCTCA-------TCCGGGACTCCGAACA
AACTTCGGT-TATCAAATCACAT-AACTCATAATACAAATCATCATCGAACGTTAAGTGTGCGGACCCTACGGGTTCGAG
AACTATGTAGACATGACCGAGACACATCTCCGGTCAATAACCAATAGCGGAACCAGGATGCTCATATTGGCTCCTACATA
TTCTACGAAGATCTTTATCGGTCAAGCCGCATAACTACATACGTTGTTCCCTTTGTCATCGGTATGTTACT
>chr5A_3367
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--------------------------------------------------------------C-GGAGA--GGGAAAA-G
GGGAA----G-GGAGAGAGAGGGAGAAGGAAAGA--G-------GGGGC--CG-CCCCCTC---CCCTAGTCCAATTCAG
TTTGGGCAAGGGGGGAGC--GCCCCTCTCAAATGGC---C-----------TTTATCCTCTCCTCCAATAAGGCCCAATA
--GGCCCAATACTTCTCCCGGGGGG--TTCCG-GTAACCTCCCGGTTCTCCGGAAGAATGCCCGAACCAC-TCAGAACCA
TTCCGATGTCCAAATGCAACCTTCCAATATTAT----------GAATCTTTATGTCTCGATCATTTCGGGACTCCGTACT
ACCTTCGGTACATCAAAACACATAAACTCATAATACCTATCGTCATCGAACATTAAGCGTGCGGACCCTATGGGTTCGAG
AACTATGTAGACATGACTGAGACTCACTTCCGGTCAATAACCAATAGCGGAACCTGGATGCTCATGTTGGTTCCTACATA
TTCTATGAAGATCTTTACTGGTCAAACCGCATAACAACA-------TTCCTTTTGTCATCGATATGTTACT
>chr6A_3368
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----------------------------------------------------------------GGAGT--AGGAGAGGA
AGGAA----G-GAGGAGAGAGGGAGGAAGGAAAG--G-------GGGGC--TG-GCCCCCC---TC-----CCAATTCGG
ATTGGGCTTGGGGGGCGC--GCCTCCCTCTT-TTCCCTTC-----------CCTCTCCTCTATTCCACTAAGGCCCAATA
--AGGCCCATATACTGCCCAGGGGG--TTCCG-GTAACCTCCCGGTACTCCGGAAAAATGCCCGAACCAC-TCTGAACCA
TTTTGATGTCCAAATATAGGCTTCCAATAT-ATCGATCTTT----------ATGTCTCAACCATA-------TCCGAACT
ACCTTTGGTACATCAAAACACATAAACTCATAATACCGATCGTCACCGAACGTTAAGCGTGCGGACCCTACGGGTTCGAG
AACTATGTAGACATGACCGAGACATGTCTTCGGTCAATAACCAATAGCGGAACCTGGATGCTCATATTGGCTCCTACATA
TTCTACGAAGATATTTATCGGTCAAACCGCATAACGGTATACGTTGTTCCCTTTGTCATCGGTATGTTACT
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSS---------SSSS------------S-SSSS-SS-SSSSSS--S--S---S-S---S
-----S----S---S--------S---S-S--S--------S----------SS--------------SS----------
------------------------S-----------------------------------------S-------------
-------------------------------S------------S------------------S-----S----------
-------------S------S----------S---------------------S------------------S--SS---
---------S-S-----S-----------------------S-S-SSS-S----S---------------------S---
------------------------S---------SS----S--------------------S--SS-------S-S-SSS
SSS-----S--S-------------S------S------S-------------------S-S--------------S---
-----------------S---------S--------------------------S---S-------S----------S-S
S--SS-S----S---S--S-S-S-S--S---------------S---S------------S-S-----S--S--------
--S-S-------------------------------------S--SS-----S--S---S-------S--------S---
--------------S------S--S------S---------------------SS-----S-S----SS-----------
-----------S----S------SS--S---S--SSSSSS-S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSS---------S-S--------------------------------------------------------
--------S---S--S----------------------------------S----S--S----S----------------
------SS-S----S---------S-----S-----S--------S-----S-S-----------------------S--
---SS-----------------------S---S-----S-------------------S--S-------S----------
S-S--------------------SS-S--SS------S------SS-----------S--S--S-----S--S-S-----
-----------------------------S-------------S----------S-----S--------S----------
-S--------------------S--------S----S------S--------S--------------S--------SS--
--------------------S--S-----S---S-SS---------------------S----S-S--------S--S--
--S--S------------S-----S---S-----S------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSS---------------------------------------------------------
-----------------------------------------------------S--------------------------
-----------------------------------------------------------------S--------------
--------------------S--S-SS-S--------------------S-----------------S------------
--------------------------------------------------------------------------------
-----------------------------------------------------------S--------------------
----------------S-----------------S---------------------------------------------
-------------------S--S----SS------------------------------------------
>forward_211
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-------------------------------TTGGCTTTGTGCATTGTCCG-----------------------------
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>reverse_2084
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---CATGGCAAATCCTCCCCAGT---------------------------------------------------------
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-----------------------------------------------------------------------
>forward_217
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-------------------------------------TTGTGCATTGTCCGTCGGTA-----------------------
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>reverse_2086
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-----TGGCAAATCCTCCCCAGTTC-------------------------------------------------------
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-----------------------------------------------------------------------
>forward_837
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-----------------AGATGGGACGAAGGGACGTA-------------------------------------------
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>reverse_2087
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------GGCAAATCCTCCCCAGTTCA------------------------------------------------------
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-----------------------------------------------------------------------
>forward_1027
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-----------------------------------------------TTGTAAGTGCTAGCGCGACA-------------
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>reverse_2942
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-------------------------------------------------------------GCTGTGGCACCAAATACTG
C-------------------------------------------------------------------------------
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-----------------------------------------------------------------------
