>input_sequence_41860
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---AGCGTATTTCGGTTTCCTCGATTGCCCCCAATCCGTGGCTGCGCGTCCGCCGGTGGCCGGGGGTTCTAATCCGAGCG
ATTCCCAATCCCAACCGCCGCTGGAAGACCCCGCAGCTCCACGACAGCGCGGGCAGA------CATGGCGCCCGTACTAC
CTGCGCCGGCGGCGGCGGCGGC------TCCTCCCACCTTCTGCCGCGTCTCTCTCCCGGCCCGCAGCGCCTTCC---CC
TCCTCC---CCCGCCAAAAGCCTTCGCAGGTTTGCGGCCAGGAGCA---GCGGCGGCGGCGGCCGTCCCGAGCCCAAAGC
AGGTACATCCACCTCCTCCTGATGCGCCCGCCGTCCTTTGGATAGTTCGAGAGGGGCATTTCGGGCTGGGTCGCTTACTC
CATCCCCCGTTGTTCTGCTGCTCATGTGCCAGGTGATGACGAGAGCAAGGCCGTCCTTGACGCCTTCTTCCTCGGGAAGG
CCTTGGCGGAGGCGCTGACGGAGAGGGCCGAGTCGGTGGTGGGCGAGGTATTCAGCGTCGTCGGGCAGTGGCAGGCGGAG
CAGCAGAAGCAGGTCCAGGAATTCCAGGTACTGCACAGCCGCGGCCCTTGCTTTGCTCCCCATGGTTAG-------TAT-
------------ACTAGTGTTTAGCTTTACCTTCAACCTGGCTACTGGACAACCAGATATGTTCCTAGGCCAGCTGATGG
CAGATAGGCCTGTGAATTCTCAGTGCCAACTTAGTAAGTTCTTGTACATTCAGATGTCACACAACT-AAAAACTAAATGA
TGTTATTCTTCTACATCCAGAAGTGCACACGCTTTAGCTTTTTGAGGTCACATAATCTAACTGCTTTCCATGATTAATCA
TCATTGTTGATCGATTCATAGTTTATAGCTACAATTTATTGTGGACATACTTTTAATTTTCTTCTCTTAACCTCAAAGAA
CTGCACTCACTTCTAAATTGCATTTTGGGGGATAATTGTAACTACAGGAGGAAGTAGTTCAGAGAGCCCAAAAGGCTAAG
GAAAGAGCTGCTGAGGAGGTCGTTGATGATAAGGGACCAAAGACTCTAAAGGGACCTTCAACAACAATCGTGACGCCTGC
ACCTATGTCTCCTCCTTCTCCTAATATTCCCACACAGGCAGAACAGTTATAAGCGGCGATGAAGAGTTAGTGCTGCATGT
AGACTCACTTT-TGTGCTCCAAGAAAGTGATGAAATTCTCCTATGAGATATGTATTGATCAAGTTGTCCTTTCTTTGATA
GTGAATATCCAGAATATCAACTAGAAAAATCTATGGT-------------------------------------------
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----------ACAAGTTCCGAGATGAGTGGAATAAAAATCTGTTAGTTT-------------GCTACAGATTCTGAAAAT
AATAATTTTATTGCCTGTATGATGTCGTTCTATATAATAATATGTTCTCAGGAAACAGCTTCAAAGAACCGTTACAACCA
GAAACAATAGTTATCTTAATTTACATTTT--TCTTTCTTGAGAAAACTTCACAAAGGACATGTGAAAGGGTG--------
--------A----------------CTGTAGCAGTAGAACTCCAAACTTGGACTCCTACTCCCTTTTACTGGTGGCCTTT
GCATCTGGTTCTTGGTGTCTTTATTCTGTCAAATAAACTGCTATTCAGTTCCCAGAGAAATTATGTGTGCACTGTGGCTA
ACTGAATATTCTCTTCGAGAGAAGTACTAGCTGGATTATGTATGCAACACATTTGTGACATGTGCTTTCCGTGATTTCAA
GAATTTGTGTTGTGTCATAATGCTTTAGTCCATTATGAATAGTTAAATACGTACATAGAATGCAGGTCTTCAAGGGAAGA
GCAGAA---CTGCAGACTATCGCAGATTATGTTGGGCGTTCTTGCC---TAAAATGCAATATATTCCAACTGATGCACTG
A-----------ACTTGCCAAAATCATTGTGAAGATAGAC----------------------------------------
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>chr2A_1_TraesCS2A01G384700
CAATATACACATAGTTCAGCTTAATCAATATATCAATAATGATTTATCCTCAGGAAGATATCCAGTGCCCAGTGGAAACC
ACCCTCTCCATGAAAACTCCGCTGTTTATAAGTAATAACCTCATCATACATGCACATTTTAGAAGTTTTTAG--------
---------------TACTTGTACACATGATTTTGAGAGTTTTCATGAGAAGGTGGTTTTCACCAGATATTTATAAAGCT
TTTATCCATAGGATGATTGGGATAAGCCCTTGCAGAAATAAATAGTAACCTAACAATACCTTTCCGCAAGATGGCCACCT
CTGAAAACTCTTGACAACGCCATCAGAGTAGATGAAAGCAATATCTTCAGCACCATCTTGTGCCTTG---------TAGT
CTTACGCACACCATCTGGCCCAACTATGCAGTTAGTTCATCTCAGGTCCTCCAGCGAGCTACAAGACGTCAAACTGTGGC
AGGCCCAGACCCACATCTCATTTCAGGCTCGGAGCTGGCGTTCCTCTGATCCTATCATTGTATAAGTTCTGAACTAGAGT
CATAGTCTTGCCCGCACGATGACATGTACAACGGAATCGGCACTGTAGCCGCTGGCTTCTTCAGAGCATAGCAAGATATA
ATCA----------CCTGCCTGCTTGGCTCTTGTCTCTCCCCCTTCCATGAAGCCGTCATTTCGTCAAACAGCTGGTCTG
CGCCAACGGGCTGACCACCTGACGCCTCTTCCCGTTGCTACTTCAGAGTGACAGAGCCGCAGCCCGCCGCAACGCTCAAT
G-CCTTGCAAGCTCGCCGTCGAGGCGATGGGGGGAAGGAGGGGAGCAGCGAGCTGACCATGCGCTTCGACTTGCCGGCGC
CGGTGACTGCGAGCTGACCATGCGCGAGCGGTGTGCCTGGCAAGTGGCAAGTGGCAACGGCTTGAGGACGATTTGTTTTG
GGTGTAATTACCGGACTGACCCTGTCTCTGCCCGTGTGCCGTGGTACACCAGCCAAGGGAAAAAGATACTCCCACAGAAG
ACAAGCGTATTTCGGTTTCCTCGATTGCCCCCAATCCGTGGCTGCGCGTCCGCCGGTGGCCGGGGGTTCTAATCCGAGCG
ATTCCCAATCCCAACCGCCGCTGGAAGACCCCGCAGCTCCACGACAGCGCGGGCAGA------CATGGCGCCCGTACTAC
CTGCGCCGGCGGCGGCGGCGGC------TCCTCCCACCTTCTGCCGCGTCTCTCTCCCGGCCCGCAGCGCCTTCC---CC
TCCTCC---CCCGCCAAAAGCCTTCGCAGGTTTGCGGCCAGGAGCA---GCGGCGGCGGCGGCCGTCCCGAGCCCAAAGC
AGGTACATCCACCTCCTCCTGATGCGCCCGCCGTCCTTTGGATAGTTCGAGAGGGGCATTTCGGGCTGGGTCGCTTACTC
CATCCCCCGTTGTTCTGCTGCTCATGTGCCAGGTGATGACGAGAGCAAGGCCGTCCTTGACGCCTTCTTCCTCGGGAAGG
CCTTGGCGGAGGCGCTGACGGAGAGGGCCGAGTCGGTGGTGGGCGAGGTATTCAGCGTCGTCGGGCAGTGGCAGGCGGAG
CAGCAGAAGCAGGTCCAGGAATTCCAGGTACTGCACAGCCGCGGCCCTTGCTTTGCTCCCCATGGTTAG-------TAT-
------------ACTAGTGTTTAGCTTTACCTTCAACCTGGCTACTGGACAACCAGATATGTTCCTAGGCCAGCTGATGG
CAGATAGGCCTGTGAATTCTCAGTGCCAACTTAGTAAGTTCTTGTACATTCAGATGTCACACAACT-AAAAACTAAATGA
TGTTATTCTTCTACATCCAGAAGTGCACACGCTTTAGCTTTTTGAGGTCACATAATCTAACTGCTTTCCATGATTAATCA
TCATTGTTGATCGATTCATAGTTTATAGCTACAATTTATTGTGGACATACTTTTAATTTTCTTCTCTTAACCTCAAAGAA
CTGCACTCACTTCTAAATTGCATTTTGGGGGATAATTGTAACTACAGGAGGAAGTAGTTCAGAGAGCCCAAAAGGCTAAG
GAAAGAGCTGCTGAGGAGGTCGTTGATGATAAGGGACCAAAGACTCTAAAGGGACCTTCAACAACAATCGTGACGCCTGC
ACCTATGTCTCCTCCTTCTCCTAATATTCCCACACAGGCAGAACAGTTATAAGCGGCGATGAAGAGTTAGTGCTGCATGT
AGACTCACTTT-TGTGCTCCAAGAAAGTGATGAAATTCTCCTATGAGATATGTATTGATCAAGTTGTCCTTTCTTTGATA
GTGAATATCCAGAATATCAACTAGAAAAATCTATGGT-------------------------------------------
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----------ACAAGTTCCGAGATGAGTGGAATAAAAATCTGTTAGTTT-------------GCTACAGATTCTGAAAAT
AATAATTTTATTGCCTGTATGATGTCGTTCTATATAATAATATGTTCTCAGGAAACAGCTTCAAAGAACCGTTACAACCA
GAAACAATAGTTATCTTAATTTACATTTT--TCTTTCTTGAGAAAACTTCACAAAGGACATGTGAAAGGGTG--------
--------A----------------CTGTAGCAGTAGAACTCCAAACTTGGACTCCTACTCCCTTTTACTGGTGGCCTTT
GCATCTGGTTCTTGGTGTCTTTATTCTGTCAAATAAACTGCTATTCAGTTCCCAGAGAAATTATGTGTGCACTGTGGCTA
ACTGAATATTCTCTTCGAGAGAAGTACTAGCTGGATTATGTATGCAACACATTTGTGACATGTGCTTTCCGTGATTTCAA
GAATTTGTGTTGTGTCATAATGCTTTAGTCCATTATGAATAGTTAAATACGTACATAGAATGCAGGTCTTCAAGGGAAGA
GCAGAA---CTGCAGACTATCGCAGATTATGTTGGGCGTTCTTGCC---TAAAATGCAATATATTCCAACTGATGCACTG
A-----------ACTTGCCAAAATCATTGTGAAGATAGACAACAGGTAATTATGCAACTAAAGTATTCTTATTATTTTT-
TTACGTACTATCATTAAATTGTAACTATTTTTCTTATACTCCTTCCGTTCCTAAATATAAGTCTTTTTAGAGATTCCAAT
ATGGACTACATACGGAGGGATCTCTAAAAAGACTTATACTCCCTCCGTTCCAAATTACTCGTCGTGGTTTTAGTTCAAAT
TTGAACTAAAACCACGACGAGTAATTTGGAACGGAGGGAGTACATTGCATACCTGCAGAACCGCGGATGAGAATGATGTT
GCAACTTCTAGTTTGCTTTGTTGATTCTTTTTTAGATGCTTATGTGATGAATTGTTGGAGTTAGAGCATAGGTATACAGC
GTTGTTAGGAATTTGCAAAGTAAATTTTTATATGAATTTTCTCTAGAGTAGAACACACCATTGGTCGTGCAGTTTAGTCA
CACAAGTTGCAGAATATTTTAAACTGGTTAAATACTTCTGATAATAAAATGTTGCAGTTTAGGGTGCTTTATGCCAAACT
CTGTTAGATACTCTCTATCTGATTGGGCAAAGGCTGCGCTATGCATGGTTTATTTATAAACATAAATATCTCTACATTCT
TACGATAACAACCTTAATATTGACCATTTGTTCACACGCATAAAGATGTCTTGCAACTCACGACCTTGCATAGTATTCAG
GCACGGGAAAT-AAGGTACGCCTTTACATGATATTCCTGACACATATGGATGGTACAAGCATAAC---------------
------------------------CAACCAATCCCCCCCTTGAGCAACTGTGAACTGGCTCAGTGGCTAGGGGAGGTTTT
AACACCCAATACGTTGTGGGTTCGAATCCTAACTTGCTCATTTGTTTCGCAACTTCTTAGTATCCAGGATTACAAATCGT
GAGCTGAATATGTGAAATGTCATTCATATATTTAGATGATATTGACGCGCGGGCAG----AACCATCAGTGGCTCAGGAA
GTATAGTACTGCTGCAGCTGGGATCCATTTTGAAACTCTCTCGAC
>chr2B_10
---------CATAGTTCAGCTTAATCAACATATCAAGAATGATTTATCCCCGTGAAGATATCTAGTGCCCGGTGGAAACC
AACCTCTCCATAAAAACTCTATGGTTTACAACTAATAACCTCCTCATACATGCATTTTTTAGAAGTTTTTAG--------
---------------TACTTCTACACGTGATTCCGAGAGTTCTCATGAGAAGGTGGTCTTCACCAGATATTC----AGCT
TTTATACATAGGATGATTGGGATAAGCCCTTGCAGAAATAAATAGTAACTTAACAATACCTTTCGTCAAGATGGCGACCT
CTGAAAACTCTTAACAAGGCCATCAGAGTGGTTGCAAGCAATATCTTCAGCACTGCGATCATCATCTTGCACCGTCTAGT
CTTACGCACACCATCTGGCCCAACTACGCAGTTAGGTCATCTCAGGTCCTCCAGCGAACTACGAGATATCAAACTGCGGT
AGGCCAAGACCCACATCTTATTTCAGGCTCGGAGCTGGAGTTCCTCTGATCCTATCATTGTACATTTGCTGAACTAGAGT
CGTAGTCTTGCCCGCACGACGACATGCACAACAGAATCGGCACCGTAGCAGCTGGCTTCTTCAGATCATAGTAAGATATA
TAATCACCTGCCTGCCTGCCTGCCTGCCTCTTGTCTCTCCCCCTTCCATGAGGCCGCCATTTCGTCAAACAGCTGGTCTG
CGCCAACGGGTTGACCCCCTGACGCCCCTTCCCATTGCTACTT--------CAGAGCCGCAGCCCGCCGCAATGCTCAAT
GGCCTTGCGATCTTGAGGTCGAGGCGATGGGGGGAAGAAGGGGA------------------------------------
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>chr2D_109
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----------------------------TAAGTAATAACCTCGTCATACATGCACATTTTAGAAGTTTTTAGAACTTACT
AAGCCTCTCTGAACTTACTTATACACGTGATTTCGAGAGTTT---------GGTGGTTTTCACCA-ATATTTATAACATG
GTACGG--------------------------------------------------------------------------
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-------------------------------------------------ACTGGCCCTGTCTCGACGACGATTTGTTTTG
GGTGTAATTACTGGACTGGCCCTGTCTCTGCCCGTGGTA-GTGGTACACCAGCCAAGGGAAAAAGATACTCCCACACAAG
ACAAGCG-------------TCGATTGCCCCCCATCCGTGGCTGCGCGTCCGCCGGTGGCCGGGGGTTCTAATCCGAGCG
ATTCCCAATCCCAACCGCCGCTGGAAGACCCCGCAGCTCCACGACAGCGCGGGCAGA------CATGGCGCCCGTGCTAC
CTGCGCCGCCGGCGGTGGCGGC------TCCTCCCACCTTCTGCCGCGTCTCTATCCCGGCCCGCAGCGCTTTCCCCTCC
TCCTCC---CCCGTCAGAAACCTTCGCAGGTTTGCGGCCAGGAGCGGCGGCGGCGGCGGCGGCCGTCCCGAGCCCAAAGC
AGGTACATCCACCACCTCCTGATGCGCCCGCCGTCCTTTGAATAGGTTGAGAGGGGCATTTCGGGCTGGGTGTCTTACTC
CATCCTCCGTTGTTCTGTTGCCCATGTGCCAGGTGATGATGAGAGCAAGGCCGTCCTTGACGCCTTCTTCCTCGGGAAGG
CCTTGGCGGAGGCGCTGACGGAGCGGGCCGAGTCGGTGGTGGGCGAGGTGTTCAGCGTCGTCGGGCAGTGGCAGGCGGAG
CAGCAGAAGCAGGTCCAGGAATTTCAGGTACGGCACAACCCCCGCCCTTGCTTTGCTCCGCATGGATAG-------TATT
AGGGATATACTGACTAGTGTTTAGCTTTACCTTCAATCTGGCTACTGGACAACCAGATATGTTCCTAGGCCAGCTGATTG
CAGATAGGCCTGTGAATTCTCAGTGCCAACTTAGTAAGTTCTTGTACATTCAGATGTCACACAACT-AAAAACTAAATGA
TGTTATTCTTCTACATCCAGAAGTGCACACGCTTTAGCTTTTTGATGTCACATAATCCAACTGCTTTCCATGATTAATCA
TCATTGTTGATCGATTCATAATTTATAG----------------ACATACTTTTAATTTTCTTCTCTTAACATCAAAGAA
TTGCACTCACTTCTAAATTGCATTTTGGGGGATAATTGTAACTACAGGAGGAAGTAGTTCAGAGAGCCCAAAAGGCTAAG
GAAAGAGCTGCTGAGGAGGTCGTTGATGATAAGGGACCAAAGACTCTAAAGGGACCTTCAACAACAATCGTGACGCCTGC
ACCTACGCCTCCTCCTTCTCCTAATATTCCCACACAGGCAGAACAGTTATAAGCGGCGATGAAGAGTTAGTGCTGCATGT
AGACTCAC-TT-TGTGCTCCAAGAAAGTGATGAAATTCTCCTATGAGATATGTATTGATCAAGTTGTCCTTTCTTTGATA
GTGAATATCCAGAATATCAACTAGAAAAATCTATGGT-------------------------------------------
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----------ACAAGTTCCGAGATGAATGGAATAAAAATCTGTTAGTTT-------------ACTACAGATTCTGAAAAT
AATAATTTTATTGCCTGTATGATGTCATACTATATAATAATATGTTCTCAGGAAACAGCTTCAAAGAACCTTTACAACCA
GAAACAATGGTTATCTTAATTTACATTTT--TCTTTCTTGAGAAAACTTCACAAAGGACATGTGAAAGGGTG--------
--------ATTCGATCATCAAATAACTGTAGCAGTAGAACCCCAAACTTGGACTCCTACTCCCTTTTACTGGTGGCCTTT
GCATCT---TCTTGGTGTCTTTATTCTGTCAAATAAACTGCTATTCAGTTCCCAGAGAAATTATGTGTGCACTGTGGCTA
ACTGAATATTCTCTTCGAGAGAAGTACTAGCTGGATTATGTATGCAACACATTTGTGACATGTGCTTTCCGTGATTTCAA
GAATTTGTGTTGTGTCATAATGCTTTAGTCCATTATGAATAGTTAAATA----CATAGAATGCAGGTCTTCAAGGGAAGA
GCAGAA---CTGCAGACTAACGCAGATTATGTTGGACGTTCTTGCC---TAAAATGCAATATATTCCAACTGATGCACTG
ATGATGTTGAAAATTTGCCAAAATCATTGTGAAGATAGACAACAGGTAATTATGCAACTAAAGTATTATTTTTATTTTTA
TTACGTACTATCATTAAATTGTAACTATTTTTCTTATACTCCCTCCGTTCCTAAATATAAGTCTTTTTAGAGATTCCAAT
ATGGACTGCATACGGAGGGATCTCTAAAAAGACTCATATTTAGGAACAG-------------------------------
-----------------------------------GGGAGTACATTGCATACCTGCAGAACCGCGGATGAGAATGATGTT
GCAACTTCTAGTTTGCTTTTTTGATTCTTTTTTAGATGCTTATGTGATGAATTGTTGGAGTTAGAGCATAGGTATACAGC
GTTGTTAGGAATTTGCAAAGTAATTTTTTATATGAATTTTCTCTAGAGTAGAACACACCATTGGTCATGCAGTTTAGTCA
CACAAGTTGCAGAATATTTTAAACTGGTTAAATACTTCTGATAATAAAATGTTGCAGTTTAGGGTGTTTTATGCCAAACT
CTGTTAGATACTCTCTATCTGATTGGGCAAAGGCTGCGCTATGCATGGTTTATTTATAAACATAAATATCTCTACATTCT
TACGATAACAACCTTAATATTGACCATTTGTTCACACGCATAAAGATGTCTTGCAACTCACGACCTTGCATAGTATTCAG
GCACGGGAAAT-AAGGTACGACTTTACATGATATTCGTGGCACATATGGATGGTACAAGCATAAC---------------
------------------------CAACCAATCCCCCCTTTGAGCAACTGTGAACTGGCTCAGTGGCTAGGGGAGATTTT
AACACCCAATACATTGTGGATTCGAATCCTAACTTGCTCATTTGTTTCGCAACTTCTTAGTATCCAGGATTACAAATCGT
GAGTTGAATATGTGAAGTATCATTCATATATTTAGATGATATCGACGTGCGGGCAG----AACCATCAGTGGCTCAAGAA
GTATAGTACTGCTGCAGCTGGGATCCATTTTGGAACTCTCTTGAC
>chr2B_797
GGGGAA--------------------------------------------------------------------------
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---------------------------------------------CAGCGAGCTGACCATGCGCTTCGACTTGCTGGCGC
CGGTGACTGGAAGCGAG------GCGCGCGGTGTGCCT----------AAGTGGCAACCGCTCGACGACGATTTGTTTTG
GGTGTAATTACCGGACTGGCCCTGTCTCTGCCCGTGGTACACC--ACACCAGCCAAGGGAAAAAGATACTCCCACACAAG
ACAAGCG-------------TCGATTGCCCCCCATCCGTGGCTGCGCGTCCGCCGGTGGCCGGGGGTTCTAATCCGAGCG
ATTCCCAATCCCAACCGCCGCTGGAAGACCCCGCAGCTCCACGACAGCGCGGGCAGAGGCAGACATGGCGCCCGTGCTAC
CTGCACCGGCGGCGGCGGCGGCGGCGGCTCCTCCTCCCTTCTGCCGTGTCTCTCTCCCGGCCCGCAGCGCTTTCC---CC
TCCTCCTTCCCCGTCAGAAGCCTTGGCAGGTTTGCAGCCAGGAGCA---GCGGCGGCGGCGGCCGTCCCGAGCCCAAAGC
AGGTACATCCACCTCCTCCTGATGCGCCCGCCGTCCTTTGGATAGTTCGAGAGAGGCATTTCGGGCTGGGTCGCTTACTC
CATCCTCCGTTGTTCTGCTGC-------CCAGGTGATGAAGAGAGCAAGGCCGTCCTCGACGCCTTCTTCCTCGGGAAGG
CCTTGGCGGAGGCTCTGACGGAGAGGGCCGAGTCGGTGGTGGGCGAGGTGTTCAGCGTCGTCGGGCAGTGGCAGGCGGAG
CAGCAGAAGCAGGTCCAGGAATTTCAGGTACGGCACAGCCGCGGCCCTTGCTTTGCTCCCCATGGAGTATTAGGGATAT-
------------ACTAGTGTTTAGCTTTACCTTCAATCTGGCTACTGGACAACCAGATATGTTCCTAGGCCAGCTGATTG
CAGATAGGCCTGTGAATTCTCAATGCCAACT-AGAAAGTTCTTGTACGTTCAGATTTCAAACAACTTAAAAACTATATGA
TGTTGTTCTTCTACATCCAGAACTGCAC-CGCTTTAGCCTTTTGATGTCACATAATCCAACTGCTTCCCACGGTTAATCA
TCATTATTGATGACAGCATAGTGTATAGCTAGAATTTATTGTGGCCATGCTTTTCGTTTTCTTCTCTAAACCTCACAGAA
TTATACACACTTCTAAATTGCTCTTTGGGGGGTAATTGTAAATACAGGAGGAGGTAGTTCAGAGAGCCCAAAAGGCTAAG
GAAAGAGCTGCTGAGGAGGTCGTTGATGATAAGGGACCAAAGACTCTAAAGGGATCTTCAACAACCATTGTGACGCCTGC
ACCTACACCCCCTCCTTCTCCTACTATTCCCACACAGGCAGAATAGTTATAAGCGACGATGAAGAGTTAGTGCTGCATGT
AGACTCAC-TTTTGTGCTCCAAGAAAGTTACGAAATTCTCCTTTGAGATATTTATTGATCAAGTTGTCCTTTCTTTGATA
GTGAATATCCAGAATGTCAACTAGAAAAATCTATGCCTGTTATGGCGCTGCTAGAAGGAGGGCGCGAGAGGGCCGGCCGG
GGGCCTTTTTGCCCACGGCCGGGCAAGAGGGAAGGGATTTCCTTCTTAATTCTTGCTTGATTAGATTGATACATTTCCTC
TCTTTATATAGAAAGGTTTACTTGACTCCCAAGCAAGGCTTACTTGACTCCTAAGAAAGCGACCCTTATCTCTAATTAAC
CCTAAGACTAACGGGCTATACCGCCAGCCCAGGCCATTAGGCCCATTACGTACTCTAACACTACACCCCACCTGGACATG
CAGCTTGTCCTCAAGCTGCAGCCTAACCAACTTATAACCATGACTTGAGGTAACACAAACCTAACACCTAAAAACAAGCC
TTTTACATCTCGGCTTGTTTTATTACTCTCAACCTGAAATGGACTGGGATGATTTATTTTGGACCTCTTAACAAAAAGTG
GATACCATCCGCACGTCGGACGTGCACGTGTACAGCCACCTGGATCCCATGGACACCATATGGACAAAAGGAGTGCATGT
GTATGGGCACCTGGAAGTGGTTGCAAGAGCGACCAACAGAGGCGCCCTCGCGGCGGAATGCAGTGGTGCTACGCGGTGCG
CTCTTGTCGGTGACACCATGCCTTCTCCCCGCCGGACGGCTGTTGGTCGGCACCGCACATAGAAGAGTGGAGGGTTGTCG
ATGGACAATGGCGAGGATGGGTGCGCCGCCCCAACCGCCGACGTCGCAGACTTTGAGGGCGTTGTCCATGGGGAAAACAG
CATGCCCAAGATCCCCGACGCAGTGGACGAGATCGAGGTCCTTTGCGCAGCGAAGCGCAACTGGGAGGAGCGGCAGCTGC
AGACCACGCAACTCCCGCACATGCCGATGCGCTAGGAGGCCGCGTGCAACAGCCTGCAGCCTCACCGTCGCCGACACGTG
GCGAGTAGTGATCCAATCTGGAAGCGGTGACGGCGACGGCGGAAGCTTGATCTGCTGGATGGGGACGCCCTGGGGAAGCG
GTGATGGCGACGGCGGGAACTTGATCTGGTGGATCGGGACTCCCGTCGGCGCGGTCGATGCGGGGCCGGAGCTGACCGGT
GATGGCTGCTGCAGTTGCAGCGGCTGCTGCGGCGGAGCGCCGGGCGCGGCGGAGGTCGCCAGGAGCGGTGGCTGCCACTG
CAGCCAGGGCGGGGCGGTGGATGGCAGCTGCTGCAGCGGCCCGATGAGCGCGGCGGAGGCCACCTGGTGCGGCGGCTGCC
ACGGCAGCCAGGACGGGACGGTGGTGGCGGTGGATGGCAGTTGCAGCGGCTGCTGTAGCAGCCCGACGAGCGCGGCGGAG
GCCGCCTGGTGCGGCGGCTGCCACGACAGCCAGGACGGGGCGATGGATGGCAGCTGCAGCGGCTGCTGCAGCAGCCCGGC
GAGCGCGGCGGGGGCCGCTTGGTGCGGCGGCTGCCACGGCAGCCACGGCGGCGCGGTGGCGGTGATGGGCGGCACAGCCG
GGTGCGGCCCATAGGACCCAGCCAAGAACAGGTGGATCTCCTGGACCGCCTGTGTTAGGTCCCGCAGCGCCCCGGACACC
TCCGGGGTGAGGACGACGGGGGCGGGCGCGACGGAGGATCCCGGCGCGGGCAGGAGCGGGGCGACGGTCGTGACCGGCAG
CGAAAGAGACGGGTTGGGCGGCGGTGAAGACATGATCGAACCGAAGCTAGCTGATACCAAATTGTTATGGCGCTGCTAGA
AGGAGGGCGCGAGAGGGCCGGCCGGGGGCCTTTTTGCCCACGGCCGGGCAAGAGGGAAGGGATTTCCTTCTTAATTCTTG
CTTGATTAGATTGATACATTTCCTCTCTTTATATAGAAAGGTTTACTTGACTCCCAAGCAAGGCTTACTTGACTCCTAAG
AAAGCGACCCTTATCTCTAATTAACCCTAAGACTAACGGGCTATACCGCCAGCCCAGGCCATTAGGCCCATTACGTACTC
TAACAATGCCACAAATTCACAGATGAATGGAATAAAAATCTGGAATAAAAATCTGTTAGTTCACTACAGATTCTGAAAAT
AATAATTGTATTGCCTGTATGACGTCATTCTATATAATAATATGTTCTCAGGAAACAGCTTCAAAGAACCTTTACAACCA
GAAACAATGGTTGTCTTAATTTACATTTTTTTCTTTCTCGAGAAAACTAAACAAAGGACATGTGAAAGGGTGATTTGATC
ATCAAATAA----------------CTGTAGCAGTAGAACCCCAAACTTGGACTCCTATTAACTTTTACTGGTGACCTTT
GCATCTGATTCTTGGTGTCTTTATTCTGTCAAATAGACTGCTATTCAGTTCCCAGAGAAATTATGTGTGCACTGTGGCTA
ACTGAATATTCTCTTTGAGAGAAGTGCTAGCTGAATTATGTATGCAACACATTTACAACATGCACTTTCCGTGATTTCAA
GAATTTTTGTTGTGTCACAGTGCTTTAGTCCATTATGAATCGTTGAATA----CCTAGAATGCAGGTCTTCAAGGGAAGA
GCAGAAGAACTGCAGACTAACACAGATTATGTTTGGACATTCTTGCCTATAAAATGCACTATGTTCCCACTGATGGACTG
ATGATATTCAGAACTTGCCAAAATC-TTGTGAAGATAGACGACAGGTAATTA--------AAGTGTTCTTATTATTTTTA
TTCCGTACTATCATTAAATTGTAACTAATTTTGTTA--------------------------------------------
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----------------------------------------TACATTGCATAACTGCTGAACTGCGGATGAGAATGATGTT
TCAACTTCTAGTTTGCTTTGTTGATTCTTT-TTAGATGCTTATGTGATGAATTCTTGGAGTTAGAGCATAGTTATATAGC
GATGTTAGGAATTTGCAAAGTAATTTTGCATATGAATTTTCTCTGGACTAGAATACACCATTGGTCGTGCAGTTCAGTCA
CATGAGTAGCAGAATA-TTTAAACTGGTTAAATACCTCTGATTATGAAATGATGCAGTTTAGGGTGTTTTA-GCGAAACT
CTGTTAAATACT--CTATCTGATTGGGCAAATGCCGCGCCATGCATGGTTCATTCACAAACATAAATATTTCTACATTCG
TACGATAACGACCTGAACGTTGGCCATTTATTCACACACATAAAGATGTCTTGCAACTCATGACCTTGCATAGTATTCAG
GCACGGGGAAACAAGGTACGACTTTACATAATTTTCCTAGCACATATGGATACTACAGACATAAAAAAAATATTCCACCC
ATTGAGTTGTCAGACGCCATATGACAACCAATTCTCCCATTGATTAACTGTGAACTGGATCAATGGCCAAGGGAGGTTTT
G-CACCCAGCGCGTTGTGGGTTCGAATCCTAACTTGCTCATCTTTTTCGCAACTTCTTAGTGTCCAGGATTACAAATCGT
GAGCTGAATATGTGAAGTATCATTCATGTATTTACATGATATTGATGCATGGGATGAAGAAACCATCAGTGGCTCAGGAC
GTATAGTACGGCTGCAGCTGGGATCCATTTTGGAGTTCTCT----
>SNPs
SSSS-SSSS-------------------S-------S------------S-SS---------S-------S---------
-S---------S-------SSSS-------------------S-------------------------------------
--------------------S-----S------S----------------------------------------------
-----S-------------------------------------------S--------------SS---------S----
------------S----S-----------S-S--S------------------SSSSS-SSS-S-SS-------------
--------------------------S--------S---------------------S----S---SS--------S--S
-----S------------S-------------------S-----------------------S-SS-S------------
-S-----------------S------S-----S----------S-----S---------------S-----S--------
SSSS-------------------S--S------------------------S----S-----------------------
----------S-----S---------S------S---------SSSSSSSS---------------------S-------
--------S-S--S-SS--------------------S------S-----------------------------S-----
---------SS---SSSSSSSSS---S-----------SSSSSSSSSS--------------S--S--------------
------------------S-----------------SSS-------------------------------------S---
-------SSSSSSSSSSSSS------------S-----------------------------------------------
---------------------------------------------------------------------------S----
----------------------------------------------------------------------S---------
-------------S--S---------------------------------------------------------------
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-----S---------------S-----------------S----------------------------------------
-------------------------------------------------S------------------------------
-----------------------S-------S---------------------------------S--------------
------------------------------------S-----------------------------------------S-
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---------------------------------------------S-----------S----------------------
-------------------------------S------------------------------------------------
S-------------------------------------------------------------------------------
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-----S-S------------------------------------------------------------------------
--------S-----------------------------------------------------------------------
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--------------------------S-----------------------------------S-----------------
--------------------------S-------------------------------------------S---------
--------S-----------------------------------------------------------------------
----------------------------------------S---------------------------------------
-------S------------------------------------------------------------------------
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-------------------------------------------------SSSS---------------------------
-------------------S------------------------------------------------------------
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------------------------------------------S-------------------------------------
-------S--------------------------S---S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------------------------------
--------------------------------------------------------------------------------
-----------------------S--------------------------------------------------------
------------------------------------------------------------------S-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------S------------------S----------------------------------------
--------------------------------------S-----------------------------------------
--------------------------------------------------------------------------------
----------------S-S-------------------------------------------------------------
--------------------------------S--------S---
>forward_811
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------AACGCTCAA
TGCCTTGCAAG---------------------------------------------------------------------
--------------------------------------------------------------------------------
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>reverse_1717
--------------------------------------------------------------------------------
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------------------------------------CCTGGCTACTGGACAACCA-------------------------
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---------------------------------------------
>forward_1048
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------CTCCCACAGAAG
ACAAGCGT------------------------------------------------------------------------
--------------------------------------------------------------------------------
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>reverse_4900
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-------------------TCGCAGATTATGTTGGGCGT-----------------------------------------
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---------------------------------------------
>forward_1759
--------------------------------------------------------------------------------
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-----------------------------------------------------------TGTTCCTAGGCCAGCTGATG-
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>reverse_5230
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-----------------------------AACGGAGGGAGTACATTGCA-------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------
