>input_sequence_41847
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--------------------------------------------------------------ATGCCGCCGCCACTTTCA
CTGCTCCACGCGCGCAAGCTCCACGCGACGCTCCTCAAGTCCGGTCACCATGGCGACGCCTACCGCTGCAACCTCCTCCT
CCGCGCCTACACCCGCGGCGGCGCACTTGCCGACGCCCGCGACCTACTGGACCTCATGCCGTCCCCGACTCTCGTCTCCT
ACAACACTGTCCTCTCGGGCTACGCCTCCTCCTCGACCCCCGGCCTCCTCGACGCCGCCCTGCACCTGCTAGACGCGATG
CCCGAAAGGGACTCCTGGTCCTGGAACACCGCGATATCCGGCCTTGCACGCGCCGGCCGGGCTCACGACGCGCTGCGGAG
GTTCCTGCAGATGACGCGCACCCCCGTGGCGCCGGACGCGTTCACCTACTCCATCGTCTCGCCGTGCTGCGGCGTTGACA
TGGGATCCGCGCGTCAGGTCCACTCGCGGGCTCTCAAGGCCGGGGTGTTCGCGGACGCCTGCGTCGGCACTGGTTTCATC
AAGCTGTACGCAGAGCTGGGCCTGATGGAGGATGCACGCAAGGTGTTCGATTGTATGCCGCTGAGGGATCTGATGTCATG
GAATGTGCTCCTGGACTGCGGTGTGAGGTCCGGGGAAGCAGGATCGTGTATGAAGGAGTTTCTTAGCATGACCGGCTGCG
GGGTTCGGCCTGATGAGTTCACCTTTGCCACTGTCTTGAATGGTTTGGCTGAGCGGTCTGCAGGTCTGGAGGCAATGCAG
GTACACTCAGTTATTCTGAAATCTGGGTATCTTAGGGATCTTTTTCTATGCAATTCTTTGCTGGACGTGTACGGGAGATG
CGGTTACGTTGACTTGGCCAAGAAACTGTTCGATGCTATGCTTGAGAAGGATGTTGTGTCGTGGACCACTGTGATTTCAG
GGCTTGCAGCCTGCGGTTACCAGGCTGATGCCTTTGACATATTTTGCCAGATGCTGAAAGCTGCAATGCCGCCCAATTCC
TTCACCTTTGGGAGCATAGTAAGCTCATGTGCATATGTGAATGACCTTGGCAGTGGGAGGCAGTGTCATGCTCTTGCTGT
CAAGCATGGGTTAGAACTCGTTCCTATAGCTGCCAGCTGTTTTGTCGATATGTACTCAAAGTGCGCCAAGATGGATGATG
CAATAAGAATGTTTGAGATCATGCCACAGAGAGACATTGTAGCTTGGAATGCAATGATATGCGGATTAGCTCAGAATGGT
CAATCAGTGAGATCTCTTGAGCTGTATGATGAAATGATGCGACTTCATCATGAATCGGTCACCCCAAACTCAGTAACTTT
TGTGGGTGTCCTGAGCGCATGCAGCCATGCTGGTGATGTCCAGAAAGGTTGCAACTACTTCACTCAAATGGTTAATGACT
TCCACATCGAACCAATTTCAGAGCACTACACTTGCCTTATCGATCTCTTTGCGCGAGCTGGGTGGTTAGATGAAGCAGAA
GAGATCATTTCGAACTTACCTTTCAAACATGATGCTGTTATCCTGGGCACCATGCTTAATGGCTGCAGAAAATATGGTAA
TCTTGACATGGCTAAGCGCTTTGCTAAGAGGCTTCTAGTGAATAATCCAGATAATGCATCGGGCATTTTTCTACTCTCAA
ATATGTACATTGCAAATGAAGAATGGAATAATGCCTCGGAGCTGAGGGATGCTGCGATATCAAGTGGAACTCATAAAGTC
ATGGGGAATAGCTGGATTGATGTTGGTGGTCAAGTACAATGTTTCAAAGCGGGCTCTAGTCCAGATGCACAATTCGAACA
GATATATGATGTTCTGCAACAACTTCAGTTGATGATGGTAGATGCTGACAAGCTGGTCACACGGATTAACTCCTTATGTA
CTTATATTAACAGTGAGTAG------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------------------------------------------------------------------
>chr4A_1_TraesCS4A01G186000
TGCAACATTTGGTAACGACGGATGACGTAGCTCAGGTGACGTAACCCTTGCGGCCGCCGCGATGAGGCCAACC---TTCT
TCGAGCCGACTAGCTGCTCGTGACTGCTGGTGTGAGGCTTGACCCAATCCTTGATGATACTAAGGATGGTCTCCAGGTCG
GAGCTCTGAGACACAGTGACCGTGACGCGAATTCTAACCCAAAATTCCTGTAGAGGGCGGT-----GGCGGTCTTCCCCG
CGCCTTCAAAGCCGGTTGCGGCCTCCCTC-CGGCTATATCCCGCAAAGTGAAGACGACCCCCGCCGTGGATCCCAAGGCC
GTGGCACTGGCCTCCGGTGGATACCAC-GGTCGCCGCTGGACGTGCGGGGAAGCCGGCGACCCCCGCCCACCGTCGATCC
CGCGACAATGTGGTCACGCATGAACGACTCCTCCCGCTTCAAGATGGGCATGCCCATGAACTGGTGTCGGCCTCCAGTGG
ATCCCACGGCCACTGCTGGACACGCGGGGAAGTCGACGGCCCCGCCCATCATCGACCCCGAGACGATGTGCCCATGCACG
AACGCCCCTCTAGCTTCGAGATGGGGACACCAATGAACCTGA-CCCCAGGATCTCGGTCGGCATCCAGCGACGCTCTCTT
CGTCGTCGTCGTGGGCGGCGAATGAGGGAGGAGAGGGGCA----------ACGGAGTGGGGAAGGAGTGGAGGGAGGAGG
AAGGCGTGGGGGAAAAAAGTGAAGACAGAGTAGTGGGGTGGCTGGGTTCATCCGGGCGACACACCTTCAACCCGAACGAG
CTTCTAAGGACGATGTGGCGAGTCGAGACCGTCGTGATGTGTGCATTTCAATCGAACATCAATAAGGACGTCAAGACGAA
ATTGCTTCGTGCCACGTGTCTGACACTTATCATTTGAGATTTGATTTTTTATGCTAAACTTAAAAA-CTTTGATCAAATT
TGTAAAACCTCCTCGGCTTTCTCAAAAAAGGTGAAAAATAACTCATTGCCACAGTTGAATGAATGCCGCCGCCACTTTCA
CTGCTCCACGCGCGCAAGCTCCACGCGACGCTCCTCAAGTCCGGTCACCATGGCGACGCCTACCGCTGCAACCTCCTCCT
CCGCGCCTACACCCGCGGCGGCGCACTTGCCGACGCCCGCGACCTACTGGACCTCATGCCGTCCCCGACTCTCGTCTCCT
ACAACACTGTCCTCTCGGGCTACGCCTCCTCCTCGACCCCCGGCCTCCTCGACGCCGCCCTGCACCTGCTAGACGCGATG
CCCGAAAGGGACTCCTGGTCCTGGAACACCGCGATATCCGGCCTTGCACGCGCCGGCCGGGCTCACGACGCGCTGCGGAG
GTTCCTGCAGATGACGCGCACCCCCGTGGCGCCGGACGCGTTCACCTACTCCATCGTCTCGCCGTGCTGCGGCGTTGACA
TGGGATCCGCGCGTCAGGTCCACTCGCGGGCTCTCAAGGCCGGGGTGTTCGCGGACGCCTGCGTCGGCACTGGTTTCATC
AAGCTGTACGCAGAGCTGGGCCTGATGGAGGATGCACGCAAGGTGTTCGATTGTATGCCGCTGAGGGATCTGATGTCATG
GAATGTGCTCCTGGACTGCGGTGTGAGGTCCGGGGAAGCAGGATCGTGTATGAAGGAGTTTCTTAGCATGACCGGCTGCG
GGGTTCGGCCTGATGAGTTCACCTTTGCCACTGTCTTGAATGGTTTGGCTGAGCGGTCTGCAGGTCTGGAGGCAATGCAG
GTACACTCAGTTATTCTGAAATCTGGGTATCTTAGGGATCTTTTTCTATGCAATTCTTTGCTGGACGTGTACGGGAGATG
CGGTTACGTTGACTTGGCCAAGAAACTGTTCGATGCTATGCTTGAGAAGGATGTTGTGTCGTGGACCACTGTGATTTCAG
GGCTTGCAGCCTGCGGTTACCAGGCTGATGCCTTTGACATATTTTGCCAGATGCTGAAAGCTGCAATGCCGCCCAATTCC
TTCACCTTTGGGAGCATAGTAAGCTCATGTGCATATGTGAATGACCTTGGCAGTGGGAGGCAGTGTCATGCTCTTGCTGT
CAAGCATGGGTTAGAACTCGTTCCTATAGCTGCCAGCTGTTTTGTCGATATGTACTCAAAGTGCGCCAAGATGGATGATG
CAATAAGAATGTTTGAGATCATGCCACAGAGAGACATTGTAGCTTGGAATGCAATGATATGCGGATTAGCTCAGAATGGT
CAATCAGTGAGATCTCTTGAGCTGTATGATGAAATGATGCGACTTCATCATGAATCGGTCACCCCAAACTCAGTAACTTT
TGTGGGTGTCCTGAGCGCATGCAGCCATGCTGGTGATGTCCAGAAAGGTTGCAACTACTTCACTCAAATGGTTAATGACT
TCCACATCGAACCAATTTCAGAGCACTACACTTGCCTTATCGATCTCTTTGCGCGAGCTGGGTGGTTAGATGAAGCAGAA
GAGATCATTTCGAACTTACCTTTCAAACATGATGCTGTTATCCTGGGCACCATGCTTAATGGCTGCAGAAAATATGGTAA
TCTTGACATGGCTAAGCGCTTTGCTAAGAGGCTTCTAGTGAATAATCCAGATAATGCATCGGGCATTTTTCTACTCTCAA
ATATGTACATTGCAAATGAAGAATGGAATAATGCCTCGGAGCTGAGGGATGCTGCGATATCAAGTGGAACTCATAAAGTC
ATGGGGAATAGCTGGATTGATGTTGGTGGTCAAGTACAATGTTTCAAAGCGGGCTCTAGTCCAGATGCACAATTCGAACA
GATATATGATGTTCTGCAACAACTTCAGTTGATGATGGTAGATGCTGACAAGCTGGTCACACGGATTAACTCCTTATGTA
CTTATATTAACAGTGAGTAGTGACAACTATGCTTTATTTTGATGAGTTTCAAATTCATATTGAGTAGTATGTGCAACTTG
GGTTGTTTTGAAT-GACCCATTTGGATAGTATTTCTATGCGAGAAGGTTAGTTACTAATGCAATGCAACCTACTACATCA
GTCGACTCGCAATACTAAATCATGTGTTCCTGAAATCATTCATATTTACTCAAACACCACGTTTGTTTGAGTACATACGT
TGCAGATGTGAGAACTCTTTGGTTTTATGCCAATAAATGTCCACTCTTCTTTTAGATGG---TTAAGTTCCTTGTCATGG
AACCAACCCACTTGGGTTCAGATGTGCCCATTCAGTGGTATTTCGGGTTTTCCAGCGCTAATCTTTCAGTGGTATGATGT
GCCCATCTACTACAAGGAGCATGCAGCGACTCCGTCAATCTCAAGATCTATCGGTTCAGTCTCTCGGAGATGCTCATGGG
AATATCGTAGGAAGAAAGATAGAGGAGGCATTTCAGATGGTAGGGGCTAGAATGAATTAATAATCTAAGGAAGAGTTGTA
TCACAAAGTTACACTCACTCGACTCGGCATGG------ACGAGGTTACAAACAAATCGAGGGACCGTTTCACAAAAGTAT
TCTGGATGCAC-GAGGAGGGTACTTATTTTTTGCAGGGAATTTAGAGCTTTATTCAAAAGAATGCATTCACTGAGTTGTT
AACCAGAAGACTGCTAATCAGGAAGCTTGGAGTTTCAGTAAGCTAGCTTTCAGTGACAGGCACGGTGCAACCACACTTTG
CACACAAATGTGCTGAACCCAGTTGCTGATCTACTTAGGGCCTGTTTGGTTTTAATAAGTCATCTGGCTTATAAGTCAGG
TGACTTAAAACCAATGACTTATAAGTCACGTCTGTTTGGTTGTCATCTGACTTATAAGTCACCTGACCACACCTTCTCAT
CTTGTTTTTTTTTATGAAAAAAGGGTGGGATCCATGCAAAAGGGGATGACTTATAAGTTTTAAGTTGGGGT
>chr4D_1
TGCAACATTTGGTAACGACAGATGACATAGCTCGGGTGACATGACCCTTGCGGCCGTCGCGATGAGGCCAACGTTTTTCT
TCGAGCCGACCTGCTGCTCGTGACTGCTAGTGTGAGGCTTGACCCGATCCTTGATGATCCTGAGGATGGCCTCTAGGTCG
GAGCTCTGAGACACGGTGACCACGACGCGAATTCCTACCCAAAATTCCTGTAGAGGGCGGTAGGATGGCGGTCTTCCCCA
CGCCTTCGAAGCCGGCTGTGGCCTCCCCCTCGGCTAGATCCCGCCATGGAT---------------------CCAAGACC
GTGGCGCCGGCCTCCGGTGGATCCCACAGGCCGCGGCTGGACGCGCGGGGAAGCCGGCGA-CCCCGCCCACCGTCGATCC
CGTGACGATGTGTCCACGCACGAACGGCTCCTCCGGCTTTAAGATGGGGATGCCCATGAACTGGCGCCGGCCTCCGGTGG
ATCCCA-GGCCGCCGTTGGACGCGCGGGGAAGTCGGCGACCCCGCCCACCGTCAACCCCGCGACGATGTGCCCATGCACG
AACGCCCCTTCGGCTTCGAGATGGGGACGCCCATGAACCTGACCCCCAGGATCTCGGCCGGCGTCCAGCGACGCTCTCTC
TGCCGTCGTCGTGGGCGACGAAGGAGGGATATAATGGGGAGGAGCAGGCGACGGAGTGGGGAACGAGTGGAGGGAGGAGG
GAGGCGTGGGG---AAAAGTGAAGATAGAGTAGTGGGGTGGCTGGGTTTGTTCGGGTGACACACCTTCGACCCGAACGAG
CTTCTAGGGACGACGTGGCGAGTCGGGAGCGTCGTGATGCGGCGTTTCAATCATACGGAGT-TAAGGACATCATGACCAT
TTTGCTTCGT-----------------------------TTAGATTTTCTAGGTTAAACTTTAAAAACTTTGATCAAATT
TGTAAAACCTCGTCGGCTTTCTCAAAAAAGGTGAAAAAGAACTCATTGCCACAATTGAATGAATGCCGCCGCCACTTTCA
CTGCTCCACGCGCGCAAGCTCCACGCGACGCTCCTCAAGTCCGGTCACCATGGCGACGCCTACCGCTGCAACCTCCTCCT
CCGCGCCTACACCCGCGGCGGCGCACTCGCCGACGCCCGCGACCTACTGGACCTCATGCCGTCCCCGACCCTCGTCTCCT
ACAACACCGTCCTCTCCGGCTACGCCTCCTCCTCGACCCCCGGCCTCCTCGACGCCGCCCTGTACCTGCTAGACGCGATG
CCCGAAAGGGACTCCTGATCCTGGAACACCGCCATATCCGGCCTTGCACGCGCCGGCCGGGCTCGCGACGCGCTGCGAAG
GTTCCTGCAGATGACGCGCACCCCCGTGGCGCCGGACGCGTTCACCTACTCCATCGTCTCGCCGTGCTGCGGCGTTGACC
TAGGGTCCGCGCGTCAGGTCCACGCACGGGCTCTCAAGGCCGGGGTGTTCGCAGATGCCTGCGTTGGTACTGGTTTCATC
AAGCTGTACGCACAGCTGGGCCTGATGGAGGATGCACGCAAGGTGTTCGATTGTATGCCGCTGAGAGATCTGATGTCATG
GAATGTGCTCCTGGACTGCGATGTGAGGTCCGGGGAAGCGGGATCGTGTATGAAGGAGTTTCTTAGCATGACCGGCTCCG
GGGTTCGGCCTGATGAGTTCACCTTTGCCACTGTCTTGAATGGTTTGGCTGAGCGGTCTGCAGGTCTGGAGGCAATGCAG
GTACACTCAGTTATTCTAAAATCTGGGTATCTTAAGGATCTTTTTCTGTGCAATTCTTTGCTGGACGTGTACGGGAGATG
CGGTTACGTTGACTTGGCCAAGAAACTGTTTGATGCTATGCTTGAGAAGGATGTCGTGTCGTGGACCGCTGTGATTTCAG
GGCTTGCAGCCTGCGGTTACCAGGCTGATGCCTTTGACATATTTTGCCAGATGCTGAAAGCTGCAATGCTGCCCAATTCC
TTCACCTTTGGGAGCATAGTAAGCTCATGTGCATATGTGAATGACCTTGGCAGTGGGAGGCAGTGTCATGCTCTTGCTGT
CAAGCATGGGTTAGAACTCGTTCCTATAGTTGCCAGCTGTTTTGTCGATATGTACTCAAAGTGCGCCAAGATGGATGATG
CAATAAGAATGTTTGAGATCATGCCACAGAGAGACATTGTATCTTGGAATGCAATGATATGTGGATTAGCTCAGAATGGT
CAATCAGCGAGATCTCTTGAGCTGTATGATGAAATGATGCGACTTCATTGTGAATTGGTCACCCCAAACTCGGTAACTTT
TGTGGGTGTCCTGAGCGCATGCAGCCATGCTGGTGATGTCCAAAAAGGTTGCAGCTACTTTACTCAAATGGTTAATGACT
TCCACATCGAACCAATTTCAGAGCACTACACTTGCCTTATCGATCTCTTTGCGCGAGCTGGATGGTTAGATGAAGCAGAA
GAGACCATTTCAAACTTACCTTTCAAACATGATGCTGTTATCCTGGGCACCATGCTTAACGGCTGCAGAAAATATGGTAA
CCTTGACATGGCTAAGCGCTTTGCTAAGAGGCTTCTAGTGAATAATCCAGATAATGCATCGGCCATTTTTCTACTCTCAA
ATATGTACATTGCAAATGAAGAATGGAGTAATGCCTCGGTGCTGAGGGATGCTGCGATTTCAAGTGGAACTCATAAAGTC
ATGGGGAATAGCTGGATTGATGTTGGTGGTCAAGTACAATGTTTCAAAGCGGGCTCTAGTCCAGATGCACAATTCGAACA
GATATATGACGTTCTGCAACAACTTCAGTTGATGATGGTAGATGCTGACAAGCTGGTCACACAGGTCAACTCCTTGTGTA
CTTATATTAACAGTGAGTAGTGACAACTATGCTTTATTTTGATGAGTTTCAAATTCATATTGAGTAGTATGTGCAACTTG
GGTTGTTTTGAAT-GACCGATTTGGATAGTATTTCTACGCGAGAAGGTTAGTTACTTATGCAATGCGACCTACTACATCA
GTCGACTCACAATACTAAATCATGTGTTCCTGAAATCATTCATATTTACTCAAACACCACGTTTGTTTGAGTATATACAT
TGCAGATGTAGGAACTCTTTGGTTTTATGCCAATAAATGTCCACTATTCTTTTAGATGGTTATTAAGTTCCTTGTCATGG
AACCAACCCACTTGGGTTCAGATGTGCCCATTCATTGGTATTTCCGGTTTTCCAACGCTATTCTTTCAGTGGTATGATGT
GCCCATCTACTACAAGGAGCATGCGGCGACTTCATCAATCTTAAGATCTATCGGTTCAGTCATT--GAGATCCTCATGGG
GATATCGTAGGAAGAAAGATAGAGGAGGAATTTCAGGTGGTA-GGGCTAGAATGAATTAATAGTCTA----AGAGTTTTA
TCACAAAGTTACACTCACTCGACTCGGCATGGGGCGCGACGAGGTTACAACCAAATCGAGGGACCATTTCGCAGAAGTGT
TTCGGACGCAC-GAGGAGGGTG-TTTTTTTTTGCAGGGAATTTAGAGCTTTATTCAAAAGAATGCATTCACCGAGTTGTT
AACCAGAAGACTG----TCAGAAAGCTCGGAGTTTCAGTAAGCCAGCTTTCGGTGACATGCATGGTGCAACCACGCTTCG
CACCCAAATGTGTTGGA-CCATTTGCTGATCAACTTA-------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------
>chr4B_898
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------ATTAGATTTTCTAGGTTAAACTTTAAAAACTATGATCAAATT
CGTAAAACCTCCTCGGCTTTCTCAAAAAAGGTGAAAAAGAACTCATTGCCACAGTTGAATGAATGCCGCCGCCACTTTCA
CTGCTCCACGCGCGCAAGCTCCACGCGACGCTCCTCAAGTCCGGTCACCATGGCGACGCCTACCGCTGCAACCTCCTCCT
CCGCGCCTACACCCGCGGCGGCGCACTGGCCGACGCCCGCCACCTACTGGACCTCATGCCGTCCCCGACCCTCGTCTCCT
ACAACACCGTCCTCTCCGGCTACGCCTCCTCCTCGACCCCCGGCCTCCTTGACGCCGCCCTGCACCTGCTAGACGGGATG
CCCGAAAGGGACTCCTGGTCCTGGAACACCGCCATATCTGGCCTTGCACGCGCCGGCCGGGCTCGCGACGCGCTGCGAAG
GTTCCTGCAGATGACGCGCACCCCCGTGGCGCCGGACGCTTTCACGTACTCCATCGTCTCGCCGTGCTGTGGCGTTGACC
TAGGATCCGCGGGTCAGGTCCACGCGCGGGCTCTCAAGGCCGGGGTGTTCGCGGACGCCTGCGTCGGCACTAGTTTCATC
AAGCTGTACGCAGAGCTGGGCCTGATGGAGGATGCACGCAAGGTGTTCGATTGTATGCCGCTGAGAGATCTAGTGTCATG
GAATGTGCTCCTGGACTGCGGTGTGAGGTCCGGCGAAGCAGGATCATGTATGAAGGAGTTTCTTAGCATGACCGGCTGCG
GGGTTCGGCCTGATGAGTTCACCTTTGCCACTGTCTTGAATGGTTTGGCTGAGCGGTCTGCAGGTCTAGAGGCAATGCAG
GTACACTCAGTTATTCTAAAATCTGGATATCTTAGGGATCTTTTCCTATGCAATTGTTTGCTGGACGTGTACGGGAGATG
CGGTTACGTTGACTTGGCCAAGAAGCTGTTTGATGCTATGCTTGAGAAGGATGTTGTGTCGTGGACCGCTGTGATTTCAG
GGCTTGCAGCCTGCGGTTACCAGGCTGATGCCTTCGACATATTTTGCCAGATGCTGAAAGCTGCAATGCTGCCCAATTCA
TTCACATTTGGGAGCATAGTAAGCTCATGTGCATATGTGAATGACCTTGGCAGTGGGAGGCAGTGTCATGCTCTTGCTGT
CAAGCATGGGTTAGAACTTGTTCCTATAGTTGCCAGCTGTTTTATCGATATGTACTCAAAGTGCGCCAAGATGGATGATG
CAATAAGAATGTTTGAGATCATGCCACAGAGAGACATTGTATCTTGGAATGCAATGATATGTGGATTAGCTCAGAATGGT
CAATCAGCGAGATCTCTTGAGCTGTATGATGAAATGATGCGACTTCATTGTGAATCGGTCACCCCAAACTCAGTAACTTT
TGTGAGTGTCCTGAGCGCATGCAGCCATGCTGGTAATGTCCAAAAAGGTTGCAGCTACTTTACTCAAATGGTTAATGACT
TCCACATCGAACCAATTTCAGAGCACTACACTTGCCTTATCGATCTCTTTGCGCGAGCTGGATGGTTAGATGAAGCAGAA
GAGATCATTTCAAACTTACCTTTCAAACATGATGCTGTTATCCTGGGCACCATGCTTAATGGCTGCAGAAAATATGGTAA
CCTTGACATGGCTAAGCGCTTTGCTAAGAGGCTTCTAGTGAATAATCCAGATAATGCATCGGCCATTTTTCTACTCTCAA
ATATGTACATTGCAAATGAAGAATGGAGTAATGCCTCGGAGCTGAGGGATGCTGCGATTTCAAGTGGAACTCATAAAGTC
ATGGGGAATAGCTGGATTGATGTTGGTGGTCATGTACAATGTTTCAGAGCGGGTTCTAGTCCAGATGCATAATTCGAACA
TATATATGATGTTCTGCAACAACTTCAGTTGATGATGGTAGATGCTGACAAGCTGGTCACACAGATTAACTCCTTATGTA
CTTATATTAACAGTGAGTAGTGACAACTATGCTTTATTTTGATGAGTTTCAAATTCAAATTAAGTAGTATGTGCTACTTG
GGTTGTTTTTGCAAGACCGATTTGGATAGTATTTATATGCGAGAAGGTTAGTTATTTATGCAATGCAACCTACTACGTCA
GTCGACTCACAGTACTAAATCATTTGTTCCTGAAATCATTCATATTTGCTCAAACACCACATTTGTTTGAGTATATACAT
TGCAGATCTAGGAACTCTTTGG-TTTACGCCAAAAAATGTCTACTCTTCTTTTAGATGGTTA---AGTTCCTTGTCATGG
AACCAGCACACTTGGGTTCAGATGTGCCCATTCAGTGGTATTTCAGGTTTTCCAGTGATATTCTTTCGGTGGTATGATGT
GCCCATCTACTACAAGGAGCATGTGGCGACTTCGTCAATCTCAAGATCTATCGGTTCAGTCTCTCGGAGATCCTGATGGG
GATATCGTAGGAAGAAAGATAGAGTACGCATTTTGGGTGGTAGGGGATAGAATGAATTAATAATCTAAGGAAGAGTTGTA
TCACAAAGTTACACTCACTCGACTCGGCATGGGGCGCGACGAGGTTACAAACAAATCGAGGGACCATTTTGCAGAAGTGT
TCCGGACGCACTGAGGAGGGTACTTTGTTTTTGCGGGGAATTTAGAGCTTTGTTAAAAAGAATGCATTCACTGAGTTGTT
AACTAGAAGACTGCTAATTAGGAAGCTTGGAGTTTCACTAAGCCAGCTCTCGGTGACAGGCACGGTGCAACCATGCTTTG
CACACAAATGTGTTGGA-CCATTTGCTGATCTACTT--------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------
>SNPs
-------------------S------S------S------S-S-------------S---------------S-------
----------SS----------------S----------------S------------S--S-------S---S------
--------------S------SS-----------SS-------------------------------------------S
-------S-------S--S--------S--------S-------S-S-SSSSSSSSSSSSSSSSSSSSSSSS-----S--
-----S-S--------------S-------S---S--------S----------------S-------------------
--S---S-----SS------S-----S-------S----S--------S---------------S-S--------S----
------S----S-S-S-----S-------------S--S---------S-S--S------S-------------------
---------SSS----------------S--S-------------------------S----S----------------S
S-S--------------S----S------SSSS-S---S------------------------S----------------
S----------SSS-----------S----------------------SS-S----S-----------S-----------
------S------S-----------S--S----------S-SSSS--SS-SSSS-SSSSSSS-------S---S---S-S
S---------SSSSSSSSSSSSSSSSSSSSSSSSSSSS---S------S--S-S-------S------------------
--------------------------------------S-----------------------------------------
--------------------------------------------------------------------------------
---------------------------S-----------------------------------------S----------
-------S--------S---------------------------------------------------------------
--------------------------------S-------------------------------S------------S--
-------------------------------------------------------------------------------S
-S---------------------S--------------------------------------------------------
-----------------------------------------------------------------S--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------S--------------------------------------------------------------
------------------------------S------------------------------------S------------
---------------------------------------------------------------------S----------
--------------------------------------------------------------------------------
-----------------------------S--------------------------------------------------
-----------------------------------------S-------------------S------------------
-------S----------------------------------------SS------------------------------
------------------------------------------S----------S------S-------------------
-------------------------------------------------------------S------------------
-----------S--------------------------------------------------------------------
S-------------------------------------------------------------S-----------------
---------------------------S------------------------------S---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------S-----------------
--------------------------------------------------------------------------------
------------------S-------------------------------------S-----------------------
--------S----------------------------------------------------------------S----S-
---------SS---------------------------------------------------------------------
--------------------------------------------S---------------S-------------------
------------------------S------S---------------------------------------S--------
S-----------------------------------S-------------------------------------------
-----------------------------------------------------------------S----S--S----S-
--S---S------------------S------------------------------------------------------
-------------------------------------------S-------S----------------------S-----
------------S--S-S---S---------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_289
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------CCGGCTATATCCCGCAAAGT-------------------------------
--------------------------------------------------------------------------------
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>reverse_2110
--------------------------------------------------------------------------------
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-----------------------------CTGCCAGCTGTTTTGTCGAT-------------------------------
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-----------------------------------------------------------------------
>forward_897
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------------------------------------------------------------------------GAA
ATTGCTTCGTGCCACGT---------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------------------------------
>reverse_2668
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------------------ATAATGCCTCGGAGCTGAGG---------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------
>forward_1586
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------------------------------------TCGATTGTATGCCGCTGAGG--------------
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-----------------------------------------------------------------------
>reverse_3519
--------------------------------------------------------------------------------
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------------------------------------------------------------------------------AT
TCTGGATGCACGAGGAGG--------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------------------------------------------------------------------
