>input_sequence_41803
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------------ATGGCTCTTGAAGCAGCGAACCACTACCTGCAGCTCGCCGGCGTCCATGGCACATCCACGCCGGCAGT
ACTACTCACCGTTCTCCTGC---TACTCATCATTCGACTAGCATGGGTGAGG---------ACCGCAACCGCGTCAACAA
GATTCGGCAAGCAGCAACAGCTCCCGCCTTCACCTCCAGGCAAGCTGCCCATCATCGGCCACCTCCACCTCCTCGGCTCC
CAGACACACATATCCATCCGGGACCTCGATGCCAAGCATGGCCGCAATGGCCTCTTGCTCCTCCGCATCGGTGCCGTACC
CACCTTGTTCGTGTCCTCGCCGAGCGCCGCCGAGGCCGTCCTGCGCACCCACGACCAAATCTTTGCGTCGCGGCCGCCAT
CCATGGCCGCCAACATCATTCGCTATGGGCCAACAGACATCGCGTTTGCACCCTATGGCGAGTACTGGCGGCAGGCCAGG
AAGCTCTTAACCACACATATGCTCAGCGCGAAGGTGGTGCACTCCTTCCGCCATGGTCGTCAAGAAGAGGTAAGAACTTT
TCCTCCTGCGCAGAAACG------AATATCGACCGTTAGTTAGTCCATCACTCATCATCTGACTCTCTGATCGATTGCTG
CAGGTGCGCCTCATTATCAACAAGATCCGTGCGGCGGCCACCAG------AGGCACGGCGGTGGACATGAGCGAGCTCCT
GTCCGGCTACACCAATGACGTCGTATGCCGTGCGGTCCTAGGAGAATCCCACCGCAAGGAAGGCCGGAACAGGCTTTTCA
GCGAGCTCACAGAGATCAATGTCTCCCTTCTTGGTGGGTTCAGCCTCGAGAATTACATCCCCCCAAATATGGTAATGGCG
GATGCGCTCTTGAGGCTGGTTTCCGTCAAGGCTCAGCGACTCAACAAGAGGTGGGACGACTTGTTCAACGAGATCATCGA
GGAACACCTACACCCCAGCAAACCATCATCTGGCGAGCAGCAAGCAGCAGATTTCATAGATCTTCTGCTCTCTCTCAAGG
AAGAGTACGGTCTCACTACGGATAACATCAAGGCCATTTTGGTGGTAA-TAATTACATTCGCAG----TTTTCT-ATTGC
AAATA--ATTGTCCATG---TCCTATACTATTGTCAATTTGTCATACTAGCTACTATAACATTTGGAGCTGGAGGGAGTA
TATAAGTAGTATGTTAAGAGTTG-----------CCATGTTGCATATACAGTTAGTACTTT---TTATGTGGTGATGTGA
TAA----ACACACA--CTAAGTTGGACCATTTGATCTTAACAGGACATGTTTGAGGCAGGCATAGAAACATCTTATCTGA
CGTTGGAATACGGCATGGCTGAGCTCATGAACAACAGACACATTCTGACAAAATTACAGGAGGAGGTAAGATCCCAAGGC
AAAAAGTTAGACATGATAACGGAGGAGGACCTTAGCAGCATGGCCTACCTAAGGGCAACCATCAAGGAGACGCTGCGCAT
GCACCCACCAGCACCCTTCCTCCTCCCACACTTCTCCACCGCTGAC---TGCAAGATCGACGGATACTTGATACCCGCCA
ACACACGTGTCCTTGTGAATGCTTGGGCCCTAGGGAGGGATCCATCGTCTTGGGAGAGGCCAGAGGATTTCTGGCCTGAG
AGGTTTCTGCAGGATCAAGATGGTGATGTGGACACCCAAATGAGGGGTAAGGATCTTAGGTTCCTGCCATTTGGGTTCGG
GCGGAGGATTTGTCCAGGGATGAATTTTGGGTTCGCCACCATGGAGGTTATGTTAGCAAATCTCATGTACCATTTTGATT
GGGATGTTCCAAATATGGTGGGTACCGGCGCAGGGGTTGATATGGCTGAGTCGTTCGGGTTAACGCTTCGCCGAAAGGAG
AAGCTTCAACTTGTTCCTCAGATTCCCTAA--------------------------------------------------
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>chr5A_1_TraesCS5A01G008900
TCATCATCAATCGCATGTTATTAAAATAAAAGACTCATGAGCATAACATTATCAGTAGATATACTCCAGAGTTAACTTGG
TGATTGTTGACAAAAGGAAGATTATATCTTTTTATCCTCATTTATTTGTGATGAAAATCCTCCTCCAGCAAGTAATATCA
AAAGACTGAAAACATTCTAATAGATAACTGATCTTTCATTAGGTCAAACCGTGTAAGCAAGCAAGTCAAGAGGAAAAGCA
TTACTTTGGATGATATATGCTTCACGCAACCCTCAAAGGAGTTCCACATACAAATGCAAAGCAAAAAA-----GGAAATA
CTTCTCAGAAAAAGAATGCTTGATACCCAATCAATATTCATGATGTGTTTATAGGGAGAGATGACTAGGAACCCAATTAA
TTAACATGGTAAAAAGCAAAGAAGTAACCAATTAAACAGCAAAAAGAAGTAACCAATTAATTAACATGGTAAAAACTAAA
GAAGTAAC-AAATTAATTAACATGGTAAAAAGTAAAGAAGTAATCAATC----------------------AAAAAGCAA
AGAAGTAAACAATTAATTAACATGGTAAATGTGAAATTGTTGGAATGTCATTCACAACTCAATGTGAAGTAGTCG-TGGT
CCCGTGCATTGGCATGGGTTGCATATATACTCAAATAGTAACATAGAAACATGCAGAGAGTATTATAGTTAGAAGTGTCA
TCTTCTCAATAAGAAA-----TATTATACGGTTTATTGGATGGTCCATAACTTCTTTGGCTTTGCAATGCACGCACGGAA
AAGCAAGGAAA-------TAAGTATTTTTCTAGAGATGTTGTGTGACTGGAGTGAATACACGTTACAGCC--GTTGAAAG
CTCAGCCAGTGGTGGAGAAGTGCACAAG-CAGTGCTATTCTGATTAGTATTGACATAATTGATGGAGAGCTTGAGGCTGC
GC--------TTATATAGATAGAGATGAGTAGGAAGTAGGAACCCAACCCAGCCCAGCCATTGTAGGCTTCCTGATCAGT
TGTGTGGACCACATGGCTCTTGAAGCAGCGAACCACTACCTGCAGCTCGCCGGCGTCCATGGCACATCCACGCCGGCAGT
ACTACTCACCGTTCTCCTGC---TACTCATCATTCGACTAGCATGGGTGAGG---------ACCGCAACCGCGTCAACAA
GATTCGGCAAGCAGCAACAGCTCCCGCCTTCACCTCCAGGCAAGCTGCCCATCATCGGCCACCTCCACCTCCTCGGCTCC
CAGACACACATATCCATCCGGGACCTCGATGCCAAGCATGGCCGCAATGGCCTCTTGCTCCTCCGCATCGGTGCCGTACC
CACCTTGTTCGTGTCCTCGCCGAGCGCCGCCGAGGCCGTCCTGCGCACCCACGACCAAATCTTTGCGTCGCGGCCGCCAT
CCATGGCCGCCAACATCATTCGCTATGGGCCAACAGACATCGCGTTTGCACCCTATGGCGAGTACTGGCGGCAGGCCAGG
AAGCTCTTAACCACACATATGCTCAGCGCGAAGGTGGTGCACTCCTTCCGCCATGGTCGTCAAGAAGAGGTAAGAACTTT
TCCTCCTGCGCAGAAACG------AATATCGACCGTTAGTTAGTCCATCACTCATCATCTGACTCTCTGATCGATTGCTG
CAGGTGCGCCTCATTATCAACAAGATCCGTGCGGCGGCCACCAG------AGGCACGGCGGTGGACATGAGCGAGCTCCT
GTCCGGCTACACCAATGACGTCGTATGCCGTGCGGTCCTAGGAGAATCCCACCGCAAGGAAGGCCGGAACAGGCTTTTCA
GCGAGCTCACAGAGATCAATGTCTCCCTTCTTGGTGGGTTCAGCCTCGAGAATTACATCCCCCCAAATATGGTAATGGCG
GATGCGCTCTTGAGGCTGGTTTCCGTCAAGGCTCAGCGACTCAACAAGAGGTGGGACGACTTGTTCAACGAGATCATCGA
GGAACACCTACACCCCAGCAAACCATCATCTGGCGAGCAGCAAGCAGCAGATTTCATAGATCTTCTGCTCTCTCTCAAGG
AAGAGTACGGTCTCACTACGGATAACATCAAGGCCATTTTGGTGGTAA-TAATTACATTCGCAG----TTTTCT-ATTGC
AAATA--ATTGTCCATG---TCCTATACTATTGTCAATTTGTCATACTAGCTACTATAACATTTGGAGCTGGAGGGAGTA
TATAAGTAGTATGTTAAGAGTTG-----------CCATGTTGCATATACAGTTAGTACTTT---TTATGTGGTGATGTGA
TAA----ACACACA--CTAAGTTGGACCATTTGATCTTAACAGGACATGTTTGAGGCAGGCATAGAAACATCTTATCTGA
CGTTGGAATACGGCATGGCTGAGCTCATGAACAACAGACACATTCTGACAAAATTACAGGAGGAGGTAAGATCCCAAGGC
AAAAAGTTAGACATGATAACGGAGGAGGACCTTAGCAGCATGGCCTACCTAAGGGCAACCATCAAGGAGACGCTGCGCAT
GCACCCACCAGCACCCTTCCTCCTCCCACACTTCTCCACCGCTGAC---TGCAAGATCGACGGATACTTGATACCCGCCA
ACACACGTGTCCTTGTGAATGCTTGGGCCCTAGGGAGGGATCCATCGTCTTGGGAGAGGCCAGAGGATTTCTGGCCTGAG
AGGTTTCTGCAGGATCAAGATGGTGATGTGGACACCCAAATGAGGGGTAAGGATCTTAGGTTCCTGCCATTTGGGTTCGG
GCGGAGGATTTGTCCAGGGATGAATTTTGGGTTCGCCACCATGGAGGTTATGTTAGCAAATCTCATGTACCATTTTGATT
GGGATGTTCCAAATATGGTGGGTACCGGCGCAGGGGTTGATATGGCTGAGTCGTTCGGGTTAACGCTTCGCCGAAAGGAG
AAGCTTCAACTTGTTCCTCAGATTCCCTAAACCTACTATGTGTAAGTTTATTTCGA-ATGAGCACAAGAATAAAGGCAAG
GAATAAAATGACTAATAATGTAGTACTGTTTATCAGTTATTATTACTA--------------------------------
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------------TATACTCCCTCCATCTCAAAATAAGTGTCTAAACTTTGTTCTAGCTCTAGATGGATGAGAAGTTAATT
TATTACACAGATCATATATGATGTACCACAGGTGCATACATAAAGAATAAAGCAATTTGCATACATTTGAGTGGCTATAG
ACCTATCAGCCACAGCACGCTGCAGCCACACAGCACGCCCGGAGATGT--------------------------------
--GGTGAGCAAAGCGCAATGGATAATAAAACTGAAAGCAAATACGGCCTAAACAATATATGTATAGGTAACTAATCATGC
ATGTATGAACACAGATATAAGCATGTAAACATTATTTCTACAATAAAA----------------AGTGATTAAGCTCAAA
CTTGAGTTGTCGCAACTCACAAGTT----------AAGCTGCTGTGTGTCTAAGACAATTAGTAACATCATA-TCTCCAA
GGGGAATCAGTGACGATCACATGTTTGAGCTTACCTCTAGATAAACCATGTGTCCTGCTGTCGTATCAGTTGCCACTGGT
TGAGGAACTTCTAGCTGAGTAGGGCTTGCTTCATCAGGTCATTTGGCCTGAGGCTAGAAAGTTGTTTTCATCATCAGACT
GGTCTTTCTCTTTGGCCGCGATCAGAGAGGGGATCTGGTCCTGTAAGGATTTTACACGGTCATAGAGCACCGAGGCCCGG
GATTGTTCTGCTTGGAGCTTTCTCTGGCATTTCTTGAGTTCTGCAAAATGTGCATCATCTATCATTAGTTCATTATTACT
ATACCTGTATTTTTTAGGTACGACTGTTAGACCTTTGAACCTGAGCATTGATAGTTGTGGATGACGCTAGGAGAGTTGGG
ACAATTTTCGTTGGTTTATTTCTCACACAATGCCATGCCAACCTGAGGGGTTGGGGATACATACTTATAGGCTGCTAGCC
AGCCAAGCATATGCTC
>chr5B_1
TCATCATCAATCGCATGTTATTAAAAGAAAAGACTCATGAGCATAACATTATCAGTAGATATACTCCAGAGTTAACTTGG
TGAAAGTTGACAAAAGGAAGATTATATCTTTTTATCCTCAATTATTTGTGATGAAAATCCTCTTCCAGCAAGTAATATCA
AAAGACTGAAAACATTCTGATAGATAACTGATCTTTCATCAGGTC-AACCGTGTAAGCAAAAAAGTCAAGAGGAAAAGCA
TTACGTTCAATGATATATGCTTCACGCAACCCTCAGAGGAGTTCCACATACAAATGCAAAGCAAAAAAAAAAAGGAAATA
CTTCTCAGAAAAAGAATGCTTGATACCCAATCAATATTCATGCCGTGTTTATAGAGAGAGATGAGTAGGAACTCAATTAA
TTAACATGCTAAAAAGCAAAGAAGTAAGCAATTAAACAGC--AAAGAAGTAACCAATTAGTTAACATGATAAAAAGTAAA
TTAGTAAAAAAATTAATTAGCATGGTAAAAAGTAAAGAAGTAATCAATTAAAAAGAAAAGAGTAACCAATTAAAAAGCAA
AGAAGTAACCAATTAATTAACATGGTAAATGTGAAATTGTTGGAATGTCATTCACAACTCAGTGTGAAGTAGTCG-TGGT
CACGTGCATTGGCACGGGTTGCATATATACTCAAATAGTAACGTAGAAACATGCAGAGAGTATTATAATTGGAAGTGTCA
TCTTTTCAATAAGAAATATTGTATTATATGGCTTATTGGATGGTCAATAACTTATTTGGCTTTGCAACACACGTACGGAA
AAGCAAGGTAAGTGCAAATAAGTATTTTTCTAGAGATGTTGTGTGGCTGGAGTGAATACATGTTACGGCCGTGTTGTAAG
CTCAGCCAGTGGTGGAAAACTGCACGAGACAC-----------------TTGACATAATTGATGGAGAGCTTGAGGCTGT
GC--------TTATATAGATAGAGATGAGTAGGACGTAGGAACCCAAACCCAGCCCA---------GCTTCCTGATCAGT
TGTGTGGACCACATGGCTCTTGAAGCAGCCTTCCACTACCTGCAGCTCGCCGGCGTCCATGGCACATCCACGCCGGCACT
ACTGCTCACCGTTCTCCTGC---TACTCATCATTCGACTAGCATGGGTGAGG---------ACCACAACGGTGTCAACAA
GATTCGGCAAGCAGCAGCAGCTCCCGCCTTCACCTCCAGGCAAGCTGCCCATCATCGGCCACCTCCACCTCCTCGGCTCC
CAGACACACATATCCATCCGGGACCTCGATGCCAAGCATGGCCGCAATGGCCTCTTGCTCCTCCGCATCGGTGCCGTACC
CACCTTGTTCGTGTCCTCGCCGAGCGCCGCCGAGGCCGTCCTGCGCACCCACGACCAAATCTTTGCGTCGCGGCCGCCAT
CCATGGCCGCCGACATCATTCGCTACGGCCCGACAGACATCGCGTTTGCACCCTATGGTGAGTACTGGCGGCAGGCCAGG
AAGCTGTTAACCACGCATATGCTCAGCGCCAAGGTGGTGCACTCCTTCCGCCATGGTCGTCAGGAAGAGGTAAAAACTTA
TCCTCATGTGCATGTGTGCGACGAAATATCAACCA----TTAGTCCGTCACTCGTCATTGGACTCGCCA----ATTGCTG
CAGGTGCGCCTTGTTATCAACAAGATCCGTGAGGCGGCCACCAG------AGGCACGGTGGTGGACATGAGCGACCTCCT
GTCCGGCTACACCAACGACGTCGTGTGCCGTGCGGTCCTCGGAGAATCCCACCGCAAGGCAGGCCGGAACAGGCTTTTCA
GCGAGCTCACAGAGATCAACGTCTCCCTTCTCGGCGGGTTCAGCCTCGAGAATTACATCCCCCCAAACATGGTAATGGCG
GATGTGCTCTTGAGGCTGGTTTCCGTCAAGGCTCAACGACTCAACAAGAGGTGGGACGACTTGTTCAACGAGATCATTGA
GGAACACCTGCACCCCAGCAAACCATCATCCGGCGAGCAGCAAGCAGCAGATTTCATAGATCTTCTGCTCTCTCTCAAGG
AAGAGTACGGTCTCACTACGGATAACATCAAGGCCATCTTGGTGGTAA-TAATTACATTCACTTGTA-TTTTCCCATTGC
AAATAAAATTGTCCATGTCCTCCTATACTGTTGTCAT-ACTACTAC--TACAAT------TTTTGGAGCTGGAGGGAGTA
TATAAGTAGTATACTAAGAGTTCATTCACAGTTTCCATGTTGCATATATATATATAGTTAGTACTTATGTGGTCATATGA
TCAACAGACACACACGCTAAGTTGGATCGTTTGATCTTAACAGGACATGTTTGAGGCTGGCATAGAAACATCCTATCTGA
CGTTGGAGTACGGCATGGCTGAGCTCATGAACAACAGACACATTCTGAAGAAATTACAGGAGGAGGTAAGATCCCAAGGC
AAAAAATTAGACATGATAACAGAGGAGGACCTTAGCAGCATGGCCTACCTAAGGGCAACCATCAAGGAGACGCTGCGCAT
GCACCCACCAGCGCCCTTCCTCCTCCCGCACTTCTCCACCGCTGAC---TGCAAGGTCGACGGATACTTGATACCCGCCA
ACACACGTGTCCTTGTGAATGCCTGGGCCCTAGGGAGGGATCCGTCGTCTTGGGAGAGGCCAGATGATTTCTGGCCTGAG
AGGTTTCTGCAGGATCAAGCTGGCGATGTGGACACCCAGATGAGGGGTAAAGATCTTAGGTTCCTGCCATTTGGGTTCGG
GCGGAGGATTTGTCCAGGGATGAATTTCGGGTTCGCCACCATGGAGGTTATGTTAGCAAATCTCATGTACCATTTTGATT
GGGATGTTCCGAATATGATGGGTACCGGTGCAGGGGTTGATATGGCTGAGTCGTTCGGGTTAACGCTTCGCCGAAAGGAG
AAGCTTCAACTTGTTGCTCAGATTCCCTAAATCTACTATGTACAAGTTTATTTCGACATGAGCACAAGAATAAAGGCAAG
GAATAAAATGACTAC---TGTACTACTGTTTATCAGTCATTATTACGTCCTCCATTCCTAAATACTCCCTCCGTCCGGAA
ATATTTGTCATCAGAATGGATAAAAAGTGGTGTATCTAGAACTAAAATACATCTAGATACATCCCCTTTTATTCATCTTG
ATGACAAGTATTTCCGGACGGAGGGAGTATAAGTCTTTTTAGAGATTCCAATAAGAGACTACGTACAGAGCAAAATGAGT
GAATCTACACTCTATAATATGTCTATATACATCTGTATGTAGTCCATAGTGAAATTTCTAAAAAGACTTACATTTAGGAA
CGGAGGGAGTACTATATAGTTC--------------------------------------AGATGTATGAGAAGTTTATC
-----------------ATAATGTACATCAGGC-------TAAACAATAGAGCAATGAACATA-ATTTGAGCGGCGATAG
ACCTATCTGCCACAACACGCTGCAGCCACATAGCACGCCCGCAGATGC--------------------------------
--GGTGAGCAAAGCGGAGTGGATAAAAAAATTGAAAGCAAATAAGGTCTAAACAGTATATGTGTAGGTAACTAATCATGC
ATGTATGGACACAGATATAAGCATGTAAACATTATTTCTACAGTAAAATAAAATTGTAGTCACAAGTGATTAAGCTCAAA
CTTGAGTCGTTGCAACTCGCAAGTTATAGGGCGACAAGCTGCTGTGTGTCTAAGACATATTGTAA-ATCATGTTCTCCAA
AGGGAATAGGTGGCGGTCTCATGTTTGGGCTTACCTCTAGATAAACCATGTGTCCTGTTGTCAGATGAGTTGCCACTGGT
TGAGGAACTACTAGTTGAGTAGGGCTTGCGTCATCA-GTCATTTGGTCCGAGGCTAGAAAGTTGTTTTCATCATCAGACT
GGTCCTTCTCTTTGGCCCTGATCAGAGAGGGGAGCTGGTATGGTAAGGATTTTGCGCGGTCATAGAGCACCAAGGCCCAG
AATTGCTCTGCTTGGAGCTTTCTCTGGCATTTCTTGAGTTCTGCAAAATGT-----------------------------
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>chr5D_383
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-------------------------------------------------------------------GGAACCCAATTAA
TTAACATGGTAAAAAGTAAAAAGTGATG----------------------------------------------------
-------------------------------------------------------------------AATTAAAAAGCAA
AGAAGTAACCAATTAATTAACATGGTAAATGTGAAATTATCGGAATGTCATTCAAAACTCAAAGCGAAGTAGCCGTTGGT
CCCGTATATTGGCAC-GGTTGCATATATATTCAAATAGTAACGTAGAAACACGCAGAG--TATTATATTTGGAAGTGCCA
TATTCTCTACAAGAAATATT-----ATACGGTTTATTGGATGGTCAATAACTTCTTTGGCTTTGCAATACACGTACGGAA
AAGCAAGGAAACTGCAAATAAGTATTTTTCTAGAGATGTTGTGTGGCTGGAGTGAATACACGTTACAGCCGTGTTGTAAG
CTCAGCCAGTGGTGGAAAACTGCACGAG-CAC-----------------TTGACATAATTGATGAAGAGCTTGAGGCTGT
GC--------TTATATAGATAGAGCTGAGTAGGAAGTAGGAACCCAACCCAGCCCAGCCATTGTAGGCTTCCTGATCAGT
TGTGTGGACCACATGGCTCTTGAAGCAGCGTTCCACTACCTGCAGCTCGCCGGCATCCATGGCACATCCACGCCGGCAGT
ACTACTCACCATTCTCCTGC---TACTCATCATTCGACTAGCATGGGTGAGG---------ACCACAACTGCGTCAACAA
GATTCGGTAAGCAGCAACAGCTCCCGCCTTCACCCCCAGGCAAGCTGCCCATCATCGGCCACCTCCACCTCCTCGGCTCC
CAGACACACATATCCATCCGGGACCTCGATGCCAAGCATGGCCGCAATGGCCTCTTGCTCCTCCGCATCGGTGCCGTACC
CACCTTATTCGTGTCCTCGCCGAGTGCCGCCGAGGCTGTCCTGCGTACCCACGACCAAATCTTTGCGTCGCGGCCACCAT
CCATGGCCGCTGACATCATTCGCTACGGCCCCACAGACATCGCATTTGCACCCTATGGTGAGTACTGGCGGCAGGCCAGG
AAGCTCTTAACCACACATATGCTCAGCGCCAAGGTGGTGCACTCCTTCCGCCATGGTCGTCAAGAAGAGGTAAGAACTTT
TCCTCCTGTGCAGAAACG------AATATCAACCGTTAGTTAGTCCGTCACTCATCATCTGACTCTCCGATCGATTGCTG
CAGGTGCGCCTCGTTATCAACAAGATCCATGAGGCGGCCACCAG------AGGCACGGCGGTGGACATGAGCGAGCTCCT
GTCCGGCTACACCAACGACGTCGTATGCCGTGCAGTCCTCGGAGAATCCCACCGCAAGGAAGGCCGGAACAGGCTTTTCA
GCGAGCTCACAGAGATCAACGTCTCCCTTCTTGGCGGGTTCAGCCTCGAGAATTACATCCCCCCAAACATGGTAATGGCG
GATGTGCTCTTGAGGCTGGTTTCCGTCAAGGCTCGGCGGCTCAACAAGAGGTGGGACGAATTGTTCAACGAGATCATTGA
AGAACACCTACACCCCAGCAAACCATCATCTGGCGAGCAGCAAGCGGTAGATTTCATAGATCTTCTGCTCTCTCTCAAGG
AAGAGTACGGTCTCACTACAGATAACATCAAGGCCATCTTGGTGGTAAGTAATTACATTCACAG----TTTTCCCATTGC
AAATA--ATTGTCCATG---TCCTACACTGTTGTCATTACTACTAC--TACAAT------ATTTGGAGCTGGAGGGAGTA
TATAAATAGTATATTAAGAGTTGG-----------CATGTTGCATACATAGTTAGTACTTT---TTATGTGGTGATGTTA
TCAACACACACACA--CTAAGTTGGATCCTTTGATCTTAACAGGACATGTTTGAGGCAGGCATAGAAACATCTTATCTGA
CGTTGGAGTACGGCATGGCTGAGCTCATGAACAACAGACACATTCTGAAAAAATTACAGGAGGAGGTAAGATCCCAAGGC
AAAAAGTTAGACATGATAACGGAGGAGGACCTTGGCAGCATGGCCTACCTAAGGGCAACCATCAAGGAGACGCTGCGCTT
GCACCCACCAGCGCCCTTCCTCCTCCCACACTTCTCCACCGCTGAC---TGCAAGATCGACGGATACTTGATACCCTCCA
ACACACGCGTCCTTGTGAATGCTTGGGCCCTTGGGAGGGATCCATCGTCTTGGGAGAGGCCAGAGGATTTCTTGCCTGAG
AGGTTTCTACAAGATCAAGATGGTGATGTTGACACCCAAATGAGGGGTAAGGATCTTAGGTTCCTGCCATTTGGGTTCGG
GCGGAGGATTTGTCCAGGGATGAATTTCGGGTTCGCCACCATGGAGGTTATGTTAGCAAATCTCATGTACCATTTTGATT
GGGATGTTCCGAATATGGTGGGTACCGGCGCAGGGGTTGATATGGCCGAGTCGTTCGGGTTAACGCTTCGCCGAAAGGAG
AAGCTTCAACTTGTTCCTCGGATTCCCTAAACCTACTATGTATAAGTTTATTTCGACATGAGCACAAGAATAAAGGCAAG
GAATAAAATGACTAATAATGTAGTGCTGTTTATCAGTTATTATTACTA--------------------------------
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------------TATATATTTC--------------------------------------AGATGGATGAGAAGTTAATT
TATTGCACAGATCATATATGATGTACCTCAGGCGCATACATAAAGAAGAATGCAATTTGCATACATTTGAGTGGCGATAG
ACCTATCTGCCACAACACGCTGCAGCCACACAGCACGCCAGCAGATGTATGTATATGTATAGGTAAAACTAATATATGTA
TAGGTGAGCAAAGCACAATGGATAATAAAACTGAAAGCAAATAAGGCCTAGACAATATATGTATAGGTAACTAATCATGC
ATGTATGGAGACAGATATAAGCATGTAAACATTATTTCTACAATAAAATAAATTTTACAC--------------------
---------TCACAACTCGCAAGTTATAGGGAGAGATGCTGCTGTGTGTCTAAGAAAATTTGTAATATCCTGTTCTCCAA
AGGGAATCAGTGACGATCTGATGTTTGGGCTTACCTCTAGGTAAATCATCTGTTCTGCTGTCAGATGAGTTGCCGCTGGT
TGAGGAACTTCTAGTTGAGTAGGGCTTGCGTCATCA-GTCATTTGGTCTGAGGCTAGAAAGTTGGTTTCATCATCTGACT
GGTCCTTCTCTTTGGCCGTGATCAGAGAGGGGAACTGGTCTTGTAAGGATTTTGCACGGGCATAGAGCACCGAGG-CCAG
AATTGCTCTGCTTGGAGCTTTCTCTGGCATTTCTTGAGTTCTGCAAAATGTGCATCATCTATCATTAGTTCATTA---CT
ATACCTGTATTTTTTAGGTATGAC--------------------------------------------------------
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>chr5D_858
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--------------------TGCACCAG-CAGTGACATTCTGATTATGGTAGACATAATTGATGGAGAGCTTGAGGCTGT
GCATGTTTATTTATATTGAGAGAGATGCATG---AGTAGGAACCCAACCCAGCCCAGCCATTGTAGGCTTCCTGGTCAGT
TG--TGGACGGCATGGCTCTTGAAGCTGCCCACCACTACCTGCAGCTCGCCGTCGGCCATGGCACATCCACGCCGGCGGT
ACTCCTCATCGTCGTTGTTCCCTTACTGATGTTAGTGCTAGTATCAGTAAGA---------ACATCAGCGTCCACAAGA-
-----A------AGCTGCGGCTCCCGCCTTCGCCTCCGGGCAGCCTTCCCATCATCGGCCACCTCCACCACATCGGCGCC
CAGACCCACATCTCCCTGCAGCACCTGGTCGACAAGTACGGCCACAACGGCCTCCTCTTCCTCCGCGCCGGCGCCGTGCC
CACCGTCATCGTCTCCTCGCCAAGCGCCGCCGAGGCCGTCATGCGCACCCACGACCACATCCTCGCGTCGCGCCCGTGGT
CCATGGCCTCGCACATCCTTCGCTACAACACCACTGACGTCGCCTTCTCGCCCTTGGGCGAGTACTGGCAGCACACCCGG
AAGCTCGTCAACACGCACCTGCTCAGTGCCAAGAAGGTGCACTCCTTCCGCCATGGCCGTCAAGAAGAGGTA--------
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>chr5A_977
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--------------------------------------------------------------------TTCCTAGTCAGC
TGTCTGGACGCCATGGCTCTTGAAGCAGCGTACCACTACCTGCAGCGCGCCGTCGGCCATGGCACATCCACAGAAGCACT
ACTACTCACCGTTCTCCTGC---TACTCATCATCCGACTAGCATGGGTAAGAGCCTTCGCCACCACCACCGCATCAGCAA
AATGCA------AGCAGCAGCTCCCGCCTACACCTCCCGGCAAGCTACCCATCATCGGCCACCTCCACCTTATCGGCTCC
CACCCCCACGTCTCATTCCGCGACCTCGCCGCAAAGCATGGCCGCGACGGCCTCATGCTCGTCCATGTCGGTGCCGTGCC
CACCGTCGTTGTGTCCACGCCCCAGGCCGCTGAGGCTGTCCTGCGCACGCACGACCACGTGTTCGCATCCAGGCCACGTA
ACCCCGTCGCCGACATCATCCGCTACAACTCCACAGACATCGCGTTCGCGCCCTACGGCGACTACTGGCGTAGGGCTAGG
AAGGTCGTCAACACGCATCTGCTCAGCGTCAAGATGGTCTACTCCAAGCGCCATGACCGCGAAGAAGAGGTA--------
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>chr5D_977
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--------------------------------------------------------------------TTCCTAGTCAGC
TGTCTGGACGCCATGGCTCTTGAAGCAGCGTACCACTACCTGCAGCGCGCCGTCGGCCATGGCACATCCACAGAAGCACT
ACTACTCACCGTTCTCCTGC---TACTCATCATCCGAGTAGCATGGGTAAGAGCCTTCACCACCACCACCGCATCGACAA
AATGCA------AGCAGCAGCTCCCGCCTACACCTCCAGGCAAGCTGCCCATCATCGGCCACCTCCACCTCATCGGCTCC
CACCCCCACGTATCCTTCCGCGACCTCGCCGCAAAGCATGGCCGCGACGGCCTCATGCTCGTCCATGTCGGTGCGGTGCC
CACCGTGGTGGTGTCCACACCTCAGGCCGCCGAGGCCGTCCTGCGCACACACGACCACGTGTTCGCGTCCAGGCCACGTA
ACCCCGTCGCCGACATCATCCGCTACAACTCCACTGACATCGCATTCGCGCCCTACGGCGACTACTGGCGTAGGGCTAGG
AAGGTCGTCAACACGCATCTGCTCAGCGTCAAGATGGTCTACTCCAAGCGCCATGACCGCGAAGAGGAGGTA--------
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>chr5B_984
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---------------------------------------------------------------------------TCAGC
TGTCTGGACGCCATGGCTCTTGAAGCAGCGTACCACTACCTGCAGCGCGCTGTCGGCCATGGCACATCCACAGAAGCACT
ACTACTCACCGTTCTCCTGC---TACTCATCATCCGACTAGCATGGGTAAGAGCCTTCGCCACCACCACCGCATCAACAA
AATGCA------AGCAGCAGCTCCCGCCTACACCTCCAGGCAAGCTGCCTATCATCGGCCACCTCCACCTCATCGGTTCC
CACCCCCATGTCTCCTTCCGCGACCTCGCCGCAAAGCATGGCCGCGACGGCCTCATGCTCGTCCATGTCGGTGCCGTGCC
CACCGTCGTCGTGTCCACGCCCCAGGCCGCCGAGGCTGTCCTGCGCACGCACGACCACGTGTTCGCGTCCAGGCCACGTA
ACCCCGTCGCCGACATCATCCGCTACAACTCCACAGACATCGCGTTCGCGCCCTACGGCGACTACTGGCGTAGGGCTAGG
AAGGTCGTCAACACGCATCTGCTCAGTGTCAAGATGGTCTACTCCAAGCGCCATGACCGCGAAGAAGAGGTACCTAGCTA
AAGGCATATATTACTCTTCTTTTATAGAAACACGGTACAGACACAGACGCTCACACTGATCGACTCAAT---GATCACTG
TAGGTGCGGCTCGTGGTCGCCAAGATCCGTGAGTTGGCCATGGCCGCTCCAGGCAAGGCGTTGGACATGACAGAGCTCCT
GGGCGGGTATGCCAGCGACTTTGTGTGCCGTGCGGTCCTCGGAGAGTCCCACAGGAAGCATGGCCGGAACGAGCTTTTCC
GCGAGCTCACCGAGATCAGCGCCTCCCTGCTGGGGGGATTCAACCTGGAGGACTACTTCCCGAGGTTGGCAAACCT---G
GATGTGTTCCTCAGGGTGGTTTGCTCCAAGGCAATGGGAGTCAGCAAAAGGTGGGACAACCTGTTTAACGAGCTCATCGC
CGAATATGAACACGGCAAGGAAGATAACGCGGAG---------------GACTTCGTACATCTTTTGCTTTCTCTGAAGA
AAGAGTACGGTCTCTCCACGGATAACGTCAAGGCCATCTTGGTGGTAA-T------------------------------
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>chr5B_1072
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---ACTCACCCTTCTCCTGC---TACTCATCATTCGACTAGCATGGGTGAGG---------ACCACAAT-----------
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-------GCCTCGTTATCAACAAGATCCGTGAGACGGCCACCAG------AGGCACGGCGGTGGACATGAGCGAGCTCCT
GTCCGGCTACACCAACGACATCGTGTGCCGTGCGGTCCTCGGAGAATCCCACCGCAAGGCAGGCCGGAACAGGCTTTTCG
GCGAGCTCACGGAGATCAACGTCTCCCTTCTCGGCGGGTTCAGCCTCGAGAACTACATCCCCCCAAACATGGTAATGGCC
GATGTGCTCTTGAGGCTGGTTTCCGTCAAGGCTCGACGACTCAACAAGAGGTGGGACGACTTGTTCAACGAGATCATTGA
GGAACACCCGCACCCCAGCAAACCATCATCCGGCGAGCAGCAAGCAGCAGATTTCATAGATCTTCTGCTCTCTCTCAAGG
AAGAGTACGGTCTCACTACGGATAACATCAAGGCCATCTTGGTGGTAA-TAATTACATTCACTTGTACTTTTCCCGTTGC
AAATA--ATTGTCCGTGTCTTCCTATACTGTTGTCAT-ACTACTACAGTATAAT------ATTTCGAGCTGGAGGGAGTA
TATAAGTAGTATATTAAGAGTTCATTCACAATTATAT------ATATATATATATA--TAGTACTTATGTGGTGATATGA
TCAACAGACACACACGCTAAGTTGGATCGTTTGATCTTAACAGGACATGTTTGAGGTAGGCATAGAAACATCTTATCTGA
CATTGGAGTACGGC------------------------------------------------------------------
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>chr5B_2305
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-----------GGCATGGCTGAGCTCATGAACAACAGACACATTCTGAAAAAATTACAGGAGGAGGTAAGATCCCAAGGA
AAAAAGTTAGACATGATAACAGAGGAGGACCTTAGCAGCATGGCCTACCTAAGGGCAACCATCAAGGAGACGCTGCGCAT
GCACCCACCAGCGCCCTTCCTCCTCCCGCACTTCTCCATCGCTGACTACTGCAAGATCGACGGATA-TTGATACCCTCCA
ACACACCCGTCCTTGTGAATGCCTGGGCCCTAGGGAGGGATCCATCGTCTTGGGAGAGACCAGAAGATTTCTGGCCTGAG
AGGTTTCTGCAGGATCAAGCTGGCGATGTGGACACCCAGATGAGGGGCAAAGATCTTAGGTTCCTGCCATTTGGGTTCGG
GCGAAGGATTTGTCCAGGGATGAATTTCGGGTTCGCCACCATGGAGGTTATGTTAGCAAATCTCATGTACCATTTTGATT
GAGATGTTCCGAATAAGATGGCTACCAGCGCAGGGGTTGATATGGCTGAGTCGTTTGGGTTAACGCTTCGCCGAAAGGAG
AAGCTTCAACTTGTTGCTCAGATTCCCTAAACCTACTATGTATAAGTTTATTTCGACATGAGCACGAGAATAAAGGCAAG
GAATAAAATGACTAAT---GTAGTACTGTTTATCAGTCATTATTACT---------------------------------
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>SNPs
--------------------------S-----------------------------------------------------
---SS-----------------------------------S---------------------S-----------------
------------------S--------------------S-----S--------------SS------------------
----S--SS--------------------------S--------------------------------------------
------------------------------------------SS----------S---------S---------------
---------------------------S------------SS-----------------S--------S------S----
SS-----S-----------S----------------------------S-------------------------------
--------S-----------------------------------------------------------------------
--------------S---------------------------S------------------------S--S---------
---------------------------------------------S----------------------S----S------
---------------------------------------------S------------------------------S---
----------------S--S-----S--------SS----------SSS------------------------------S
--------------------------------------------------------------------------------
------------------------------S-------------------------------------------------
----------------------------------------------------------------S---------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------S-------------S--S--S------------------------------------------------
-----------------------------S--------------------------------------------------
--------S---------------------S------------------------------------S------------
------------S------------------S------------------------------------------------
---------------S-----------------------S----------------------------------------
-------------------S--------------S--------------------------------S------------
----S---------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------S----------------------S------------S------
-----------------------------S------S-SSSS-SSSSSSS-S-SSSSSSS--------------------
------------S-----------------------------------S-------------------------------
-S------------------------S-S---------------------------------------------------
-------S----------------------------------------S-------------------------------
--------------------------------------------------------------------------------
------------S-------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------S----------------------------------------------------
----------S---------------------------------------------------------------------
-----------------------------------------S--------------------------------------
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----------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------
----S----------------------S----S------------------------------------------S----
-------S------S--------------------------S--------------------------------------
-------------------------------------------S------------------------------------
-------S------------------------------------------------------------------------
-------S----------S-----------------------------------------S----S-----S--------
S-----------------S--------S----------------------------------SS--S-------------
--------------S--------------S------S---------S---------------------------------
----S-------------S--------------S------S------------S------------------------S-
S----S---------------------------------------------------------------------SSS--
--------------------S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSS
>forward_906
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------CAGTGGTGGAGAAGTGCACA------------------------------------------------------
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>reverse_2891
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----------AAATATGGTGGGTACCGGCG--------------------------------------------------
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>forward_1472
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------------ACATCATTCGCTATGGGCCA------------------------------------------------
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>reverse_3562
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-----------------------------------------GAGATGTGGTGAGCAAAGCG-------------------
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----------------
