>input_sequence_41783
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-------------------------------------------------------ATGAGCAGTAGACACGAGGGCGGCG
GCCATGGCGCCGCCGCGGCGGCGGCGGGAGGAGCTGGCGTGGGGAGTATCAAGGAGGGCGGCGGCCGGGACGCGCACGAG
GACGACCTGGTCATGCCGGGGTTCCGGTTCCACCCGACGGAGGAGGAGCTCATCGAGTTCTACCTCCGCCGCAAGGTGGA
GGGCAAGCGCTTCAATGTCGAGCTCATCACCTTCCTCGACCTCTACCGCTACGACCCCTGGGAGCTCCCAGGTCTGGAAC
ACA------------------ATC---------AC--------TCAATTCAATTGCCG-TTTTCAGAATTCAGATCTCTG
TGCTGAATTTCTCATGCGTGTGTGTGTGGCTGACCGGCGACTGCAGCGCTGGCGGCGATTGGGGAGAAGGAGTGGTTCTT
CTACGTGCCGAGGGACCGCAAGTACCGGAACGGGGACAGGCCCAACCGGGTGACGGCGTCGGGGTACTGGAAGGCGACGG
GGGCGGACAGGATGATCCGGGCGGAGAACAACCGCTCCATCGGGCTCAAGAAGACGCTCGTCTTCTACTCCGGCAAGGCG
CCCAAGGGCGTCCGCAGCAGCTGGATCATGAACGAGTACCGCCTCCCCACCGCCGACACCGACCGATACCACAAGGTATA
TCCTAGCTATATTATAGCATCTCCTAGAAATTCTCCTCCTGATCTATCCATCTGCGCAAGAAACGGCCGGCCGGAATGAT
TAATCTGCAGGTAATTTCATTAGAAGACATGAACTAGGGTTTGTGCTGCGCCTGT--AGTCCTGTACTACTACTAGTTCT
TTGATGTTGGGTG---CCAATTTTGGGGCATCTAATTTTGCCTTTATTGTACTTCTTGTGCAT--ATATACGCGGTTTCA
GATCTACAAGTAATCAGCTAGCTAGGGCTTCAATCTTCTTCATCTTACATACTTGCACCCTGGTGTTCTTGTCATGA---
--------ACAACCTATACGCACTCGATTGTATATCT------ATAC-----TAGCTAGCATCTTGAACATATGGCTATG
AAGAACC--TAGAATTCCATCCTAGATTCCTCAATCTTTTTGACCGGAATCAATTGTAGT--CAAGTTTACAATTGAATT
TTAACTAGAGAGCAGACATCGTCCTCAATTCTTCGCATGCGACA--TTTCCTTGTGCGATCGATCCTCACGTGT----TA
CG--TCCATG-----AATTTGCAGACAGAAATCTCTCTCTGCCGCGTCTACAAGCGCACCGGCATCGACGACGGCCGTGG
CCACCCCTCCTCGGCGCGGTCGACGATGCCCTCCCGCCGCGGCGCTGAG---GCACGACAGGACAACAGACAAGGGTCAT
CGTCGACGTCCACGCCCACGCCGCCGCCGACTCCATCCAAGCTCCAACTTCTACAAGCAGGCGAGTGCACGTCGCCGCCG
GCGCCCATGACCGATCACGCCCAAACGCACAGGCCGGCGG---CTCCAAGGCAGCAGCTAGCAGCCGCCGTCAAGCCCTC
AGGTGGCTCATTAGGATACCTACAGTCAACCGCGGCGGCCGGCGAACATCATCAGCAGGAGGGAGCCGCGGCTTTGCTTT
ACCAGCAGTACTCCAAGAGCACAAACACCTTCGCTTCCACGTACTCGCTGCTCAACCTGGTGAACGCGGCCTCCATGGGC
GTCGCCTCCGCCGCGGCCATCGACGAGCTGAGCACGCTGGTGGGCCACGGCGCCACCCAGCTGCCGTCCTACCACAGCCC
CGCGTCGTCCGGCGGCCACCACGACCACTTCGTCGTTCCCCTGCCGGCGCCGCCGTCGCAGCCAATTACGCCGCTGGGGA
CGCTGCCGATGTCGCTGGCCGCCATCTCCGACAAGATCTGGGACTGGAACCCGATCCCCGACGCGGCGGCGGGCAGAGAT
TACGGTGGCGCCGGCTTCAAGTGA--------------------------------------------------------
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-----------------------------------
>chr3A_1_TraesCS3A01G403300
ATACTCAAAGATAATGTGTGATCCGCGGTCTCGACTGCCGCTATGAAAATTGGGCAAACATGCTCGTATCAATGATAACT
TAGCGAGATCATAATCGTTGATTAGCTCTAGC-AAATGTTGTTTGTGCTAGTGGAACTCTTTCATTTGGACTTATGGAGA
TGCCAGTAAAATCTAAAATGTCAATGCCACAATGAAGTTACTTATGCCAGAAGAGTAATAACCTCGATTCAAGATGAAAT
TAAGGAGGATAAATTGGTGCAACATGAGAAGAAGAAAAATGCATTATAGGTGCGGAAGAACTTATATTTTGGTTAAAGTT
GAAAACATTTTTTTAGACATTAAAGTTGAAAACATTTACTACCAGACTTACATTGTGGACCCAAGAGAGTAGCCGGGCCC
AAGGAAAGAG--TACAGAGAATCACCAATGCCACCGCATTAATCAATGCAAAGAATGCAGACGCACTCCATATCCATCAC
TCACCTCACCGGGGCACAATCACAGGGTTGCAAGCGGGCAACCGCCCATGGCTGTACTCTTCCTGAGGCGTCCTTTTCCC
CCTATTTAACTCAGCTCCTCCGTCGCTTTCCACCTCCCGCCTCCCGTGTGTGATGCGTCAGGGCTCGCTCACATATCGCC
ATTGCCACTCCACTGTGCGCGCGTAGGC----ATTCTAGCCAGCGTAGAGTAGTGGTTAGAGCGACCAGTAGCAGCCGCC
----CAGTTAATACTCACGCTAGGTAAAGATACTGGATGTATCCCACGATCGACTAATCCTTGTGCTTTCTCATCGATAT
ATATATTGGCCCAAA-CACTAATCTTATCCCTTCCTT--CTCGAACGATTCTCCACTTGC-ATACGCGCACCCCGGCCGG
GCCGAGCTCCTTTTCGCGAGAGGAAGCAGCTGGCCACTTAACTTGCTCTCGTGCTCACCTAGCTAGCTGCCTAGCTAACA
CCCAGCTGCCCTAGCCCCTAGCTAGCTAGCAACCTATGCGAATTGGGGAGGAGGCATGAGCAGTAGACACGAGGGCGGCG
GCCATGGCGCCGCCGCGGCGGCGGCGGGAGGAGCTGGCGTGGGGAGTATCAAGGAGGGCGGCGGCCGGGACGCGCACGAG
GACGACCTGGTCATGCCGGGGTTCCGGTTCCACCCGACGGAGGAGGAGCTCATCGAGTTCTACCTCCGCCGCAAGGTGGA
GGGCAAGCGCTTCAATGTCGAGCTCATCACCTTCCTCGACCTCTACCGCTACGACCCCTGGGAGCTCCCAGGTCTGGAAC
ACA------------------ATC---------AC--------TCAATTCAATTGCCG-TTTTCAGAATTCAGATCTCTG
TGCTGAATTTCTCATGCGTGTGTGTGTGGCTGACCGGCGACTGCAGCGCTGGCGGCGATTGGGGAGAAGGAGTGGTTCTT
CTACGTGCCGAGGGACCGCAAGTACCGGAACGGGGACAGGCCCAACCGGGTGACGGCGTCGGGGTACTGGAAGGCGACGG
GGGCGGACAGGATGATCCGGGCGGAGAACAACCGCTCCATCGGGCTCAAGAAGACGCTCGTCTTCTACTCCGGCAAGGCG
CCCAAGGGCGTCCGCAGCAGCTGGATCATGAACGAGTACCGCCTCCCCACCGCCGACACCGACCGATACCACAAGGTATA
TCCTAGCTATATTATAGCATCTCCTAGAAATTCTCCTCCTGATCTATCCATCTGCGCAAGAAACGGCCGGCCGGAATGAT
TAATCTGCAGGTAATTTCATTAGAAGACATGAACTAGGGTTTGTGCTGCGCCTGT--AGTCCTGTACTACTACTAGTTCT
TTGATGTTGGGTG---CCAATTTTGGGGCATCTAATTTTGCCTTTATTGTACTTCTTGTGCAT--ATATACGCGGTTTCA
GATCTACAAGTAATCAGCTAGCTAGGGCTTCAATCTTCTTCATCTTACATACTTGCACCCTGGTGTTCTTGTCATGA---
--------ACAACCTATACGCACTCGATTGTATATCT------ATAC-----TAGCTAGCATCTTGAACATATGGCTATG
AAGAACC--TAGAATTCCATCCTAGATTCCTCAATCTTTTTGACCGGAATCAATTGTAGT--CAAGTTTACAATTGAATT
TTAACTAGAGAGCAGACATCGTCCTCAATTCTTCGCATGCGACA--TTTCCTTGTGCGATCGATCCTCACGTGT----TA
CG--TCCATG-----AATTTGCAGACAGAAATCTCTCTCTGCCGCGTCTACAAGCGCACCGGCATCGACGACGGCCGTGG
CCACCCCTCCTCGGCGCGGTCGACGATGCCCTCCCGCCGCGGCGCTGAG---GCACGACAGGACAACAGACAAGGGTCAT
CGTCGACGTCCACGCCCACGCCGCCGCCGACTCCATCCAAGCTCCAACTTCTACAAGCAGGCGAGTGCACGTCGCCGCCG
GCGCCCATGACCGATCACGCCCAAACGCACAGGCCGGCGG---CTCCAAGGCAGCAGCTAGCAGCCGCCGTCAAGCCCTC
AGGTGGCTCATTAGGATACCTACAGTCAACCGCGGCGGCCGGCGAACATCATCAGCAGGAGGGAGCCGCGGCTTTGCTTT
ACCAGCAGTACTCCAAGAGCACAAACACCTTCGCTTCCACGTACTCGCTGCTCAACCTGGTGAACGCGGCCTCCATGGGC
GTCGCCTCCGCCGCGGCCATCGACGAGCTGAGCACGCTGGTGGGCCACGGCGCCACCCAGCTGCCGTCCTACCACAGCCC
CGCGTCGTCCGGCGGCCACCACGACCACTTCGTCGTTCCCCTGCCGGCGCCGCCGTCGCAGCCAATTACGCCGCTGGGGA
CGCTGCCGATGTCGCTGGCCGCCATCTCCGACAAGATCTGGGACTGGAACCCGATCCCCGACGCGGCGGCGGGCAGAGAT
TACGGTGGCGCCGGCTTCAAGTGACGGATCA--AGGGAAGCGCGTGCGCGGCAACAGTGCATGCACCCGTGCATGGCTAG
CTGTGC----AATTGGTACCACTCCACCTCTTGTACACCTCTCTCTCTCTC-TCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCCACAGTTATTATTCTTCCGAGTAAACGAACAATTAGACCATTATAGCATTCTTGGCCAG-TCCATATATAGATC
ACCCCATCTTCTCAG-------GTATCATCA----------AGAATTCAGGATAGATAATTTGTAATTCCTGATGAGTTC
CATATAATAACCTCG-TCGATTTGACAAGATACACATGCATGTGTTACTGA----CAATGTAGGACCTGGATGGGCGCAT
GTACTTGCATGTGTCTAGTGAAAAGTGCCTCGTTTTTAACTGTCTGACTTTGGACACATAAAATAATGCCATGCCGCCAG
CTGCATGATTGGGCGATGACCATGGCAGAGATTGCCTCATCGGAATGATTAGGAGAGAGT---------GAGAACTTGCA
GGCCGGGGGTGCTGTCGGGGTGTACTACAGGACCGTGTCAGAGATGGATGTGAGGATTATACTGGCCTGCTGCAATCATG
TGAGCGCAACATTTGTCTTTTCTCTCTTCTCCCTCTCTCTGCATGCTCTCTGCATATACAGTCGGAGCACTGTGTTCTCT
TGCCATGGTTTGTTGGATTTTTGTTAGTGCTATCATGGATTATTGGATTAGCTTGCTTGTCAGAGCGTGTCATGGACTCA
CTCACTCACACACTCACCGGTGGATGGTACGTACGGCCAGGCGGTGTCGTCCCAGTTTGGGCCTCGCAGATGTGTGTGGG
GATGGAA--------GAAATGCACCGCCAAATTGGTGTGGG-AGATAAGATACCTCCTGTCTACCTAG---CTACTTGGC
CCGTGCATGAGATGAAATCGATACCTTGGATAGGACAGTCTATACTCGTAGGGAGCAAAGCTGCTTCTGAAATATATATT
GCTGGTCTTGGACTCTTGGTACTTTTAGATTCTCT
>chr3D_98
--------------------------------------------------------------------------------
-----------------TTGATTAGCTCTAAGGAAATGTTGTTTGTGCTAGTGGAACTCTCTCATTTGGACTTACGGAGA
TGCTAGCAAAATGC-------CAATGCCACACTATAGTTATTCATGCCAGTAGAGTAATAACCTC-ATTCAAGATGAAAT
TGAGGAGGATAAATTGGTGCAACATATAGGAAAAAT--ATGCATTATAGGTGCGGAAGAACTTATATTTTGGTTAAAGTT
GAAAATATTTACCAA------------------------TACCAGACTTACATTGTGGACCCAAGAGAGTAGCCGGGCCC
AAAGAAAGAG--TACAGAAAATCACCAAAGCCACCGCATTAATCAATGCAAAGAATGCAGACGCACTCCATATCCATCAC
TCACCTCACCGGGGCACAATCACAGGGTTGCAAGCGGGCAACCGCCCATGGCTGTACTCTTCCTGAGGCGTCCTTTTCCC
CCTATTTAACTCGGCTCCTCCGTCGCTTTCCACCTCTCCCGTGT-GTGTGTGATGCGTCACGGCTCGCTCACATATCGCC
ATTGCCACTCCACTGTGCGCGCGTAGCTCGGGATTCTAGCTAGCGTAGACTAGTGGTTAGAGCGACCAGTAGCAGCCGTC
----CAGTTAATACTCACGCTAGGTAAAGATACTGGATGTATCCCACGATCGACTAATCCTTGTGCTTTCTCGTCGATAT
ATATATTGGCCCAAA-CACTAATCTTATCCCTTCCCCCCCTCGATCGATTCTCCACTTGCAATACGCGCACCCCGGCCGG
GCCGAGCTCCTTTTCGCGAGAGGAAGCAGCTGGCCACTTAACTTGCTCTCGTGCTCACCTAGCTAG----CTAGCTAACA
CCCAGCTGCCCTAGCCCCTAGCTATCTAGCAACCTATGCGAATTGGGGAGGAGGCATGAGCAGCAGACACGAGGGCGGCG
GCCATGGCGCCGCCGCGGCGGCGGCG---GGAGCTGGCGTGGGTAGTATCAAGGAGGGCGGCGGCCGGGACGCGCACGAG
GACGACCTGGTGATGCCCGGGTTCCGGTTCCACCCGACGGAGGAGGAGCTGATCGAGTTCTACCTCCGCCGCAAGGTGGA
GGGCAAGCGCTTCAATGTCGAGCTCATCACCTTCCTCGACCTCTACCGCTACGACCCCTGGGAGCTCCCAGGTCTGGAAC
A--------------------ATC---------AC--------TCTACTCAATTGCCTCTTTTCAGAATTCAGATCTTTG
TGCTGAATTTCTTATGCGTGGC--TGTGGCTGACCGGCGACCGCAGCGCTGGCGGCGATTGGGGAGAAGGAGTGGTTCTT
CTACGTGCCGAGGGACCGCAAGTACCGGAACGGGGACAGGCCCAACCGGGTGACGGCGTCGGGGTACTGGAAGGCGACGG
GGGCGGACAGGATGATCCGGGCGGAGAACAACCGCTCCATCGGGCTCAAGAAGACGCTCGTCTTCTACTCCGGCAAGGCG
CCCAAGGGCGTCCGCAGCAGCTGGATCATGAACGAGTACCGCCTCCCCACCGCCGACACCGACCGATACCACAAGGTACG
TAGTACCTGTATTCTAGCATCTCATAGAAATTTCCCTCCTGATCTATCCATCTGCACAAGAAACGGCCGGCCGGAATGAT
TAATCTGCAGGTAATTTCATTAGAAGACATGAACTAGGGTTTGTGCTGCGCCTGT--A--------------CTAGTTCT
TTGATTTTGGGTAGTACCAATTTTGGGGCATATAATTTTGCCTTTATTGTACTTCTTGTGCATAAATATACGCCGTTTCA
GATCTACAAGTAATCAGCTAGCTAGGGCTTCAATCTTCTTTATCTTAT-TACTTGCACCATGGTGTTCTTGCCATGA---
--------ACAACC--TACGCACTCGATTGGATATCTCTCTAGATAGCACTATAGCTAGAATCTTGAACATATGAG----
--GAACC--TAGAATTCCATCCTAGATTCCTCAATCTTTTTGACCGGAATCAATTGTAGTATCGACTTTAGAACTAAATT
TTCAGCAGAGAGTAGACA---TCCTCAATTCTTCGCATGCCACACATTTCCTTG-----TCGATCCTCACGTGT----TA
CACCTCCATG-----AATTTGCAGACAGAAATCTCTCTCTGCCGTGTCTACAAGCGCACCGGCATCGACGACGGCCGTGG
CCACCCCTCCTCGGCGCGGTCGACGATGCCCTCCCGCCGCGGCGCTGAG---GCACGGCAGGACAACAGACAAGGGTCAT
CGTCGACGTCCACGCCCACGCCACCGCCGACTCCATCCAAGCTCCAACTTCTACAAGCAGGCGAGTGCACGTCGCCGCCG
GCGCCCATGACCGATCACGCCCAAACGCACAGGCCGGCGG---CTCCAAGGCAGCACCTAGCAGCCACCTTAAAGCCCTC
GGGTGGCTCATTAGGATACCTACAGTCAACCGCAGCGACCGGCG---ATCATCAGCAGGAGGCAGCCGCGGCGTTGCTGT
ACCAGCAGTACTCCAAGAGCACAAACACCTTCGCGTCCACGTACTCGCTGCTCAACCTGGTGAACGCGGCGTCCATGGGC
GTCGCCTCCGCCGCGGCCATCGACGAGCTGAGCACGCTGGTGGGCCACGGCGCCGCCCAGCTGCCGTCCTACCACAGCCC
CGCGTCGTCCGGCGGCCACCACGACCACTTCGTCGTTCCACTGCCGACGCCGCCGACGCAGCCAATTACGCCGCTGGGGA
CGCTGCCGATGTCGCTGGCCGCCATCTCCGACAAGATCTGGGACTGGAACCCGATCCCCGACGCGGCGGCGGGCAGAGAT
TACGGTGGCGCCGGCTTCAAGTGACGGATCAAGAGGGAAGCGCGTGCGCGGCAACAGTGCATGCACCCGTGCATGGCTAG
CTGTGC----AATTGGTACCACTCCACCT--TGTACACCTC---------C-TCTCTCTCTCTCTCACTCTCTCCCTCTC
TCTCTCCACAGTTATTATTCTTCTGAGTAAACGAACAATTAGACCATTATAGCATTCTTGGCCAG-TCCATATATAGATC
ACCCCATCTTCTCAGGTACTACGTACTCCAGTATGATCAAGAGAATTCAGGATAGATAATTTGTAATTCCTGATGAGTTC
CATATAATAACCTCG-TCGATTTGACATGATACACATGCATGTGTTACTCACTGGCAATGTAGGACCTGGATGGGCGCAT
GTACTTGCATGTGTCCAGTCAAAAGTGCCTCGTTTTTAACTGTCTGACTTTGGACACATAAAATAATGCCATGCCGCCAG
CTGCATGATTGGGCGATGACCATGGCAGAGATTGCCTCACCGGAATGATTAGGAGAGAGAGAGAGAGGAGAGAACTTGCA
GGCCGGAGGTGCTGTCGGGGTGTACTACAGGACCGTGTCAGAGATGGATGTGAGGATTATACTGGCCTGCTGCAATCATG
TGAGCGCAACATTTGTCTTTTCTCTCTTCTCCCACTCTCTGCATGCTCTCTGTATATACAGTCGGAGCACTGTGTTCTCT
TGCCATGGTTTGTTGGATTTTTGTTAGTGCTATCATGGATTATTGGATGA----GCTTGTCAGAGCGTGTCATGGACTCA
CACT------CACTCACCGGTGGATGGTACTTACGGCCAGGCGGTGTCGTCCCGGTTTGCGCCTCGCAGACGTGTGTGGG
GATGGAAAGGGAGGTGAAATGCACCGCCAAATTGGTGTGGGGAGATAAGATACCTCCTGTCTACCTAGTAGCTACTTGGC
CCGTGCATGAGAT-----CGATAACTTGGAGAGGACAGTCTATACTCGTAGGGAGCAAGCTGTTTTCTCAAATATATATT
GCTGGTCTTGGTACTTTT-----------------
>chr3B_98
--------------------------------------------------------------------------------
-----------------TTGATTAGCTCTAAGGAAATGTTGTTTGTGCTAGTGGAACTCTCTCATTTGGACTTATGGAGA
TGCTAGCAAATGA--------CAATGCCACACTACAGTTATTTACGCCAGTAGAGTAATAACCAC-ATTCGAGATGAAAT
TAAGGAGGATAAATTGGTGCAACATGAGAAGAAGAAAATGCA---------GCGGAGGAACTTATATTTTGGTTAAAGTT
GAAAATATTTACCAA------------------------TACCAGACTTACATTGTGGACCCAAGAGAGTAGCCGGGCGG
GCCCAAGGAAGCTACACGAACTCACCAAAGCCACCGCATTAATCAATGAAAAGAATGCAGACGCACTCC--ATCCATCAC
TCACCTCACCGGGGCACAATCACAGGGTTGCAAGCGGGCAACCGCCCATGGCTGTACTCTTCCTGAGGCGTCCTTTTCCC
CCTATTTAACTCGGCTCCTCCGTCGCTTTCCAC--CTCCCGTGT-GTGTGTGATGCGTCACGGCTCGCTCA--TATCGCC
ATTGCCACTCCACTGTGCGCGCGTAGCTCGGGATTCTAGCTAGCGTAGACTAGTGGTTAGAGCGGCCAGTAGCAGCCGCC
CGATCAGTTAATACTCACGCTAGGTAAAG--------------CCACCATCGATTAATCCTTGTGCTTTCTGATCGATAT
ATATTGCCCCAGACACCACTAATCTTATCCTT--CCCCCCTCGACCGATTCTCCACTTGC-ATACGCGCACCCCGGCCGT
GCCGAGCTCCTTTTCGCGAGAGGAAGCAGCTGGCCACTTAACTTGCTCTCGTGCTCACCTAGCTAG----CTAGCTAACA
CCCAGCTGCCCTAGC-------TAGCTAGCAACCTGTGCGGATTGGGGAGGAGGCATGAGCAGCAGACACGAGGGCGGCG
GCCATGGCGCCGCCGCCGCGGCGGCG---GGAGCTGGCGTGTGTAATATTAAGGAGGGCGGCGGCCGGGACGCGCACGAG
GACGACCTGGTGATGCCGGGGTTCCGGTTCCACCCGACGGAGGAGGAGCTGATCGAGTTCTACCTGCGCCGCAAGGTGGA
GGGCAAGCGCTTCAATGTCGAGCTCATCACCTTCCTCGACCTCTACCGCTACGACCCCTGGGAGCTCCCAGGTCTGGAAC
A--------------------ATC---------AC--------TCTATTCAATTGCCTCTTTTCAGAATTCAGATCTTTG
TGCTGAATTTCTTATGCGTGGC--TGTGGCTGACCGGCGATCGCAGCACTAGCGGCGATTGGGGAGAAGGAGTGGTTCTT
CTACGTGCCGAGGGACCGCAAGTACCGGAACGGGGACCGGCCCAACCGGGTCACGGCGTCGGGGTACTGGAAGGCGACGG
GGGCGGACAGGATGATCCGGGCGGAGAGCAGCCGCCCCATCGGGCTCAAGAAGACGCTCGTCTTCTACTCCGGCAAGGCG
CCCAAGGGCGTCCGCAGCAGCTGGATCATGAACGAGTACCGCCTCCCCACCGCCGACACCGACCGATACCACAAGGTATA
TTCTAGCTATATTCTAGCATCTCACTGAAATTCCCCTCCTGATCTATCGATCTGAACAAGAAACGA---GCTGGTTTAAC
TAATTTGCAGGTAATTTAATTAGCAGGTATGAACTAGGGTTTGTGCTTCGCCTGTGTA--------------CTAGTTCT
TTGATGTGGGTTACTACCAATTTTTGGGCATCTAATTTTCAAATTGTTCTGCTTATGG----T--GCATACGCCTTTTCA
GGTCTGCAAGTTAATC---AGCTAGGGCTTCAATCTTTTGTATCTTCT---CTTGCACCTTGTTGTTCATGCCATGAACA
ACATATGCACAACC--TATGCACTCGATTGGATATCTCCCTAGATGC-----TAGCTAGCATCTGGAACATATGAA----
--GAACCTATAGAATTCCATCCTAGATTCCTTAACTTTCAGC--------------------------------------
-------------AGACA---TCCTCAATTCTTCGCATGCCACA--TTTGCTTC-----TCGATCCTCAGTCCTCACGTA
CG--TCCATGAATTAAATTTGCAGACCGAAATCTCTCTCTGCCGCGTCTACAAGCGCACCGGCATCGACGACGGCCGTGG
ACACCCCTCCTCGGCGCGGTCGACGATGCCCTCCCGCCGTGGCACTGCAGCAGCACAGCAGGACAACAGACAAGGGTCAT
CGTCGACGTCCACGCCCACGCCACCGCCGACTCCGTCCAAGCTACACCTTCTCCAAGCAGGCGAGTGCACGTCGCCG---
GCGCCCATGACCGATCACGCCCAGACGCACAGGCCGGCGGCGGCTCCACGGCAGCAGCTAGCAGCCACCGTAAAGCCCTC
GGGTGGCTCAATAGGATACCTACAGTCGACCGTTGCGGCCGGCGAGCATCATCAGCAGGAGGGAGCCGCGGCGTTGCTTT
ACCAGCAGTACTCCAAGAGCACAAACACCTTCGCGTCCACGTACTCGCTGCTCAACCTGGTGAACGCGGCCTCCATGGGC
GTTGCCTCGGCCGCGGCCATCGATGAGCTGAGCACGCTGGTGGGCCACGGCGCGGCCCAGCTGCCGTCCTACCACAGCCC
CGCGTCATCCGGCGGCCACCACGACCACTTCGTCGTTCCCCTGCCGACGCCGCCGTCGCAGCCAATAACGCCGCTGGGGA
CGCTGCCGATGTCGCTGGCCGCCATCTCGGACAAGATCTGGGACTGGAACCCGATCCCCGACGCGGCGGTGGGCAGAGAT
TACGGTGGCGCCAGCTTCAAGTGACGGATCAAGAGGGAAGCGCCTGCGCGGCAACAGTGTATGCACCCGTGCATGGCTAG
CTGTGCAATTAATTGGTACCACTCCACCT--TGTACACCTC---------CCTCTTTCTCTCTCTCACTCTCT-CCTCTC
TCTCTCCACAGTTATTATTCTTCTGAGTAAACGAACAATTAGACCATTATAGCATTCTTGTCCAGGTCCATATATAGATC
ATCCCATCTTCCCAG-------GTACTCCAGTATGATCAAGAGAATTCAGGATAGATAATTTGTAATTCCTGATGAGTTC
CATATAATAACATCGATCGATTTGACATGATACACATCCATGTGTTACTCACTGGCAATGTAGGACCTGGATGGGCGCAT
GTACTTGCATGTGTCCAGTCAAAAGTGCCTCGTTTTTAACTGTCTGACTTTGGACACATAAAATAATGCCATGCCGCCAG
CTGCATGATTGGGAGATGACCATGGCAGAGATTGCCTCACCGGAATGATTAGGAGAGAGAGAGAG-GGATAGAACTTGCA
GGCCGGGGGTGCTGTCGGGGTGTACAACAGGACCGTGTCAGAGATGGATGTGAGGATTATACTGGCCTGCTGCAATCATG
TGAGCGCAACATTTGTCTTTTCTCTCTTCTCCCTCTCTCTGCATGCTCTCTGCATGTACAGCGGGAGCACTGTGTTCTCT
TGTCATGGATTATTGGATTTTTGTTAGTGCAATCATGGATTATTGGATGA----GCATGTCAGAGCGTGTCATGGACTCA
CTCA---------TCCCCGGTGGATGGTACGTACGGCCAAGCGGAGTCCCAGTT-TTTGGGCCTCGCAGATGTGTGTGGG
GATGGAAAGGGAGGTGAAACGCAATGCCAAATTGGTGTGGGGAGATAAGATACCTCCTGTCTAGC---TAGCTACTCGGC
CCGTGCATGAGAT-----CGATACCTTGGACAGGGCAGTCTATACTCGTAGGGAGCAAAATTGTTTCTGAAATATATATT
GCTGATCTTGGTACT--------------------
>chr1D_1085
GGCGGCAGTC----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------GACTCGCATGAG
AACGACCTGGTGATGCCGGGATTCCGGTTCCACCCGACGGAGGAGGAGCTGATCGAGTTCTACCTCCGGCGCAAGGTGGA
GGGCCGGCGCTTCAACGTCGAGCTCATCACCTTCCTCGACCTCTACCGCTTCGACCCATGGGAGCTCCCCGGTACATAGT
--------CATACACACACATACA---------GCACCGCTTAACT-----------------CAAATTGGGGTCT----
TGATTAATTTCTTGGTGTTGGC--AGCAA--------------------TGGCGGTGATTGGGGAGAAGGAGTGGTTCTT
CTACGTGCCCCGGGACCGCAAGTACCGGAACGGCGACCGGCCGAACCGGGTGACGGCGTCGGGGTACTGGAAGGCGACGG
GGGCCGACAGGATGATCCGCGGCGAGAACAGCCGGCCCATCGGCCTCAAGAAGACGCTCGTCTTCTACTCCGGCAAGGCC
CCCAAGGGCGTCCGCAGCAGCTGGATCATGAACGAGTACCGCCTC-----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------CCG
CCGCCCACCACCGAC-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------
>chr1A_1085
GGCGGCAGTC----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------GACTCGCACGAG
AACGACTTGGTGATGCCGGGGTTCCGGTTCCACCCGACGGAGGAGGAGCTGATCGAGTTCTACCTCCGGCGCAAGGTGGA
GGGCCGGCGCTTCAACGTCGAGCTCATCACCTTCCTCGATCTCTACCGCTTTGACCCATGGGAGCTCCCCGGTACACACT
AGCTAGAACACACAGCCACACACC---------GC--------TTAGCTCAAATTAATCTTGGCAGATTGGGGTCT----
TGATTGATTTCTTGTTGTTGGC--AGCAA--------------------TGGCGGTGATTGGGGAGAAGGAGTGGTTCTT
CTACGTGCCCCGGGACCGCAAGTACCGGAACGGCGACCGGCCGAACCGGGTGACGGCGTCGGGGTACTGGAAGGCGACGG
GGGCCGACAGGATGATCCGCGGCGAGAACAGCCGGCCCATCGGCCTCAAGAAGACGCTCGTCTTCTACTCCGGCAAGGCC
CCCAAGGGCGTCCGCAGCAGCTGGATCATGAACGAGTACCGCCTC-----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------CCG
CCGCCCACCACCGAC-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------
>chr1B_1085
GGCGGCAGTC----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------GACTCGCACGAG
AACGACCTGGTGATGCCGGGGTTCCGGTTCCACCCGACGGAGGAGGAGCTGATCGAGTTCTACCTCCGGCGCAAGGTGGA
GGGCCGACGCTTCAACGTCGAGCTCATCACCTTCCTCGACCTCTACCGCTTCGACCCATGGGAGCTCCCCGGTACAC---
----------TACATACACATATACCGATAAACGCACCGCTTATTAGCTCAAATTAATCTTGGCAGATTGGGGCCT----
TGATTGATTTCTTGGTGTTGGC--AGCAA--------------------TGGCGGTGATTGGGGAGAAGGAGTGGTTCTT
CTACGTGCCTCGGGACCGCAAGTACCGGAACGGCGACCGACCGAACCGGGTGACGGCGTCGGGGTACTGGAAGGCGACGG
GGGCCGACAGGATGATCCGCGGCGAGAACAGCCGGCCCATCGGCCTCAAGAAGACGCTCGTCTTCTACTCCGGCAAGGCC
CCCAAGGGCGTCCGCAGCAGCTGGATCATGAACGAGTACCGCCTC-----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------CCG
CCGCCCACCACCGAC-----------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------
>SNPs
SSSSS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSS-------------SS----------------------------S-------------------
---S--S-----SSSSSSSSS----------S-SS-----S---------S--------------S--------------
--------------------------------------------------------------------------------
-----S----SSSS-SSSSSSSSSSSSSSSSSSSSSSSS-----------------------------------------
--S---------------S---------S---------------------------------------------------
--------------------------------------------------------------------------------
------------S-----------------------S-S-S-SSS---------------S-------------------
--------------------------SS------------S--------S------------------------------
--------------------------------------------------------------------------------
-----------------------------------SS-------S-----------------------------------
------------------------------------------------------------------SSSS----------
---------------------------------------------------------------S----------------
--------------------------SSS--------------S------------------------------------
-----------S--------------------------------------S-----------------------------
--------------------------------------------------------------------------------
-SS------------------------------------------------------S-------------------S--
------------S-------SSSS-----------------S--------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-S-----------S---------S---------S---------------------S------------------------
----------------------------------------------------------SSSSSSSSSSSSSS--------
------------S------------------------------------------------------------S------
----------------------------------------S------SS----------S-----------S--------
--------------SS--------------S-------------------------------------------SSSSSS
SS-------------------------------------------------------------S-S----S--S-S----
--S-SS------S-----SSS-------------------S-------------SSSSS---------------------
--------------------------------------------------------------------------------
---------------------------------------------------------S----------------------
----------------------S---------------------------------------------------------
------------------------------------------------------------------S----S--------
S--------------------------------S-----------S--------------------------S-------
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------------------------------------------------------S-------------------------
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--------------------------------------------------------------------------------
-----------------------------SS----------SSSSSSSSS----------------S-------S-----
-----------------------S--------------------------------------------------------
-------------------------SSSSSS-------------------------------------------------
---------------------------S---------------------S------------------------------
---------------S---S------------------------------------------------------------
---------------------------------------S-------------------S--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------S-SSSS--------------------------
----SSSSSS-------------------------------------------S--------------------------
--------------------------------------------------------------------------------
-------------SSSSS------------S----------------------------SS--S----------------
-----------SSSS--SSSSSSSSSSSSSSSSSS
>forward_47
---------------------------GTCTCGACTGCCGCTATGAA---------------------------------
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-----------------------------------
>reverse_1171
--------------------------------------------------------------------------------
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--------------------------------------------------CATCGAGTTCTACCTCCGCC----------
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-----------------------------------
>forward_55
-----------------------------------TGCCGCTATGAAAATTGGGC-------------------------
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-----------------------------------
>reverse_1373
--------------------------------------------------------------------------------
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------------CATGCGTGTGTGTGTGGC--------------------------------------------------
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-----------------------------------
>forward_56
------------------------------------GCCGCTATGAAAATTGGGCA------------------------
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-----------------------------------
>reverse_1714
--------------------------------------------------------------------------------
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---------------------------------TCCTCCTGATCTATCCATCTGC-------------------------
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-----------------------------------
>forward_67
-----------------------------------------------AATTGGGCAAACATGCTCGT-------------
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-----------------------------------
>reverse_1832
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-----------------------------------------------------------------------ACTAGTTCT
TTGATGTTGGGTGC------------------------------------------------------------------
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-----------------------------------
>forward_1827
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-----------------------------------------------CTGCGCCTGTAGTCCTGTAC-------------
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-----------------------------------
>reverse_3734
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-----------------------------------------------------TGCTTGTCAGAGCGTGTCAT-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------
