>input_sequence_41757
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------CCTGCTCC-------GTCTAGTCGCGACACCCGCACAGCT
CTGGT----TCGCAGCGATGGCGAGCCACCGCCGCCTCCGCGACCTGCTCCTCCTCGCCGCGGCGCTCCTGCTCTCCGCC
TCCTGCGCCGCCGCCGCCAACTTCGAGTACTGCAGTAAGTGCTCCGAACTCTCCTTTCTCCGCTAAACCATCCCCGTTTT
GACTCTCGAGATTCC-GCGGATTGTGTATGCGATGCGAGCTTCTATTGGTGCTTGGTTCCGCAGATAAGGGGCGCCACTA
TCCGGTGAAGGTGAGCGGCGTCGAGATCGTCCCCGACCCCGTCGTGCGCGGCCAGCCCGCCACCTTCAAGATCTCCGCCT
CCACCGGTAAGATTTCGTCGAATAGCCTGAACTCCTTGCGATCTCGCTTGTGAATTGTGACGCGGTGTGCTCATGACTGC
TGTCGAGCAACTTGAATCTA------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------GCTTG-----------------------------------------------------
--TTAGATCGGTGGCTCCGTGTGTATGTAGTAGTCAGATCAAATCGATGCACTTTTGCTTGTTTTTTTGAGGTATAAATT
TTTTCGAGGAAGAGGAATCAAACTAGTGCCCTGCTGAAGGTCTCGCTGGCGCTATCCATGTACTGTTACATGTGAATT-A
GTCACGTGCGCGGTAACATTTCAA--------CCATGAATTGG------------GGCCTACCATGGTGTGTTAGAGAAA
CTGAGAATTGGGGAATATGTCTCTTTATGTGTTTCTGTAAGACTGCTTTGGAGTTTGGACAAAAAGGCAGCTGGTACTGC
CATTCTATTTGCACCTG--GGATGTTTGGATTGTGGAACATCCAATATTCGTTGGACTCAAATTGCAGTAATGCGTGCAT
GTTTATTGGCCTTACTTTCATGACTTCCCTCTGTTTGTCGGTGCTTGTATGTGAGTTTGCCGAGGGTTCCCGAGTCTCCT
AAAATTCACCACACATGTCTACCGAAATGGT--------TTGTAGTAGTATGTCCCAGTTAATTGTTCTGATAGCCAAGA
GGTGAAGGAAATGTGAGTTCTAACATGTGGTTCCTGCAAAACACTTTATAGATTCCATTTCGTAGTTAGTACCATGGTCG
CTAGGGCTTTAATATTGAAATTGTTATGATGTGGATCTGGCAGGGTTTCTGCTGAAATATAGATTCTTTTTATCTGTTGG
GTCTAGTCT-TCCTAGATCTGCTACTAGTGTCTGCACACGCACACACACAC-------GCATGCACCCATATTTCACAGT
ATTTTTCTGTAACTAGAATGTTTT-TTTTTTCTAGTTGCTTCCTTCCTCTGAATCTCCCTGATACATTTTTACTGCTGTT
TACACCTGACAGATAAAACCATCACCAAAGGGAAGCTGGTGGTAGATGTGTGGTACTTCTTTTTACACGTCGATTCAGAG
ACTCATGACTTGTGTGCTGGGACTCCCTGTCCCGCAACGGGCAAATTCGTACTAGCCAGCGAACAGACTTTGCCATCTTA
CACCCCACCAGTAAGCATACCCGCAGTGCACATTCAGTTCCGGTGCCGAACTTTGTCTAGATATTTTCCCTTGTAGTGCT
TGT-GACAGACAAGGGGCTCAATAGGTCGCTGCAAGTAACATCACATCCAGACATCCTGACGTTTTGTGTTGTTGTGATG
TGCTTCAGGGTTCTTACAGTCTCCAGATGAAGCTGCTGGGGGACAAGAACGAGGAGCTGACCTGCATCTCGTTCGGGTTC
AGCATCGGGTTCGTCGCGCCTGTCGCCATTATGTGACCCAAATATGTGCCGCGAACCAAACGCAC-------CCTTGGTT
GCAGTTGCAAAGAGCTAGCACACCAC------GTATGAATGTACCTGCAGAACTCTCTGAAATCTGAATCACCCCGGGTG
GGAGAGCATGTGTTGGACTGAGCCGTTTTAT------------------CGTTTGTTCTGAGTG----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------
>chr5D_1_TraesCS5D01G434300
TCCCTGAGTGTAAACAGCCAATGCTTTGCGTTCGGTTCAGTGGTTGTTGCTATCGTTTCAGCCAACTCGTTGTCTATCAA
TGCCCACGTGCATCTTGAGACTGTGCATTCGACTAGTGAGTGTTTCCAAGAATCCTCCATCCCGCAGAAACCGCGTGCAC
TCGTATCAGTCATGTTTTTGCGCGCTCTAATGTCATTTGTCGAAATTGATTGTCGGGCGAGTCTCCATAAGAACATCCGG
ATCTTCGCCGGTACTTGTGTCTTCCACGCACCCTTCCAACTACCCTCCTCCTTCCGGATCTTCGCCCGTACTTGTGTCTT
CCACATACCCTTCCAACTACCCTCCTCCTTCGCCGAGCTAGAGGAGTCGGCCAAACCTTCGAGCTAGGCGGATCCTATTT
AGCGCTTCAGCGCCCGTTGGCAAACGACCGCCTAAAGGCGCTTCTAATTGCGCTCGGCCCATCTTGCCATTCTTTTTTGT
TATCTAAACCAAAAAAATGAGGAGCGCGCTTGGAAGGACTGGTCTAGGTGTCGCTGCACTAACCACCACACATAGGTACA
TCTAAAAAAAACCACACATAGGTCATCTCACGTGATCAGTTCCCCCTTCTCCCCTCTTTACTTCTACGTCATTTTTTTCT
TTTTTCTTTTTTATTTGGAACGATTTTGTTTGGTTTTTTTATTCTTTGCTAAATTGAATGAACTTTTTTATAAATTTCTG
AACTTTTTTCAAAACCGATGAACTCTTATCGAATTTGATGAACTTTTTTTTGAATGCGATAAACTCTATTTTTCTAAATC
AATGAACTTTTTTTTGTACTGGATGATCGAAGGCCTTAGTTGGGCTTAGTTGTCTAGTGGTGGTTCGTAAAGTCAACTGA
AGGCCTCCGCCCGGTCCAAACTAAGCCCAACCCAGTGCACGCCTAATCAGGCCCACACACATAAATGTCTCTCTCTCTAT
TGACCGTGTCCCACTTCCTCAACGACCCGACTCGTGTCCACCTGCTCC-------GTCTAGTCGCGACACCCGCACAGCT
CTGGT----TCGCAGCGATGGCGAGCCACCGCCGCCTCCGCGACCTGCTCCTCCTCGCCGCGGCGCTCCTGCTCTCCGCC
TCCTGCGCCGCCGCCGCCAACTTCGAGTACTGCAGTAAGTGCTCCGAACTCTCCTTTCTCCGCTAAACCATCCCCGTTTT
GACTCTCGAGATTCC-GCGGATTGTGTATGCGATGCGAGCTTCTATTGGTGCTTGGTTCCGCAGATAAGGGGCGCCACTA
TCCGGTGAAGGTGAGCGGCGTCGAGATCGTCCCCGACCCCGTCGTGCGCGGCCAGCCCGCCACCTTCAAGATCTCCGCCT
CCACCGGTAAGATTTCGTCGAATAGCCTGAACTCCTTGCGATCTCGCTTGTGAATTGTGACGCGGTGTGCTCATGACTGC
TGTCGAGCAACTTGAATCTA------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------GCTTG-----------------------------------------------------
--TTAGATCGGTGGCTCCGTGTGTATGTAGTAGTCAGATCAAATCGATGCACTTTTGCTTGTTTTTTTGAGGTATAAATT
TTTTCGAGGAAGAGGAATCAAACTAGTGCCCTGCTGAAGGTCTCGCTGGCGCTATCCATGTACTGTTACATGTGAATT-A
GTCACGTGCGCGGTAACATTTCAA--------CCATGAATTGG------------GGCCTACCATGGTGTGTTAGAGAAA
CTGAGAATTGGGGAATATGTCTCTTTATGTGTTTCTGTAAGACTGCTTTGGAGTTTGGACAAAAAGGCAGCTGGTACTGC
CATTCTATTTGCACCTG--GGATGTTTGGATTGTGGAACATCCAATATTCGTTGGACTCAAATTGCAGTAATGCGTGCAT
GTTTATTGGCCTTACTTTCATGACTTCCCTCTGTTTGTCGGTGCTTGTATGTGAGTTTGCCGAGGGTTCCCGAGTCTCCT
AAAATTCACCACACATGTCTACCGAAATGGT--------TTGTAGTAGTATGTCCCAGTTAATTGTTCTGATAGCCAAGA
GGTGAAGGAAATGTGAGTTCTAACATGTGGTTCCTGCAAAACACTTTATAGATTCCATTTCGTAGTTAGTACCATGGTCG
CTAGGGCTTTAATATTGAAATTGTTATGATGTGGATCTGGCAGGGTTTCTGCTGAAATATAGATTCTTTTTATCTGTTGG
GTCTAGTCT-TCCTAGATCTGCTACTAGTGTCTGCACACGCACACACACAC-------GCATGCACCCATATTTCACAGT
ATTTTTCTGTAACTAGAATGTTTT-TTTTTTCTAGTTGCTTCCTTCCTCTGAATCTCCCTGATACATTTTTACTGCTGTT
TACACCTGACAGATAAAACCATCACCAAAGGGAAGCTGGTGGTAGATGTGTGGTACTTCTTTTTACACGTCGATTCAGAG
ACTCATGACTTGTGTGCTGGGACTCCCTGTCCCGCAACGGGCAAATTCGTACTAGCCAGCGAACAGACTTTGCCATCTTA
CACCCCACCAGTAAGCATACCCGCAGTGCACATTCAGTTCCGGTGCCGAACTTTGTCTAGATATTTTCCCTTGTAGTGCT
TGT-GACAGACAAGGGGCTCAATAGGTCGCTGCAAGTAACATCACATCCAGACATCCTGACGTTTTGTGTTGTTGTGATG
TGCTTCAGGGTTCTTACAGTCTCCAGATGAAGCTGCTGGGGGACAAGAACGAGGAGCTGACCTGCATCTCGTTCGGGTTC
AGCATCGGGTTCGTCGCGCCTGTCGCCATTATGTGACCCAAATATGTGCCGCGAACCAAACGCAC-------CCTTGGTT
GCAGTTGCAAAGAGCTAGCACACCAC------GTATGAATGTACCTGCAGAACTCTCTGAAATCTGAATCACCCCGGGTG
GGAGAGCATGTGTTGGACTGAGCCGTTTTAT------------------CGTTTGTTCTGAGTGTCGAATGTCGGTTGTG
TGTGT--TTTACATGTGTAGTTTGTCTCGGCGGTTGCTTTCGACGAATCATGGGCGTTTTGGGTGATTAGTTGGGGCCGG
TGCCGCATTCATCCTG---TGATGGCCCGACAAGGGCGTTCATCCGTGGAGGACCTGTCGTGGGTTGCTGCTAGCACGCT
GTCGTGGGTTGCT-----------GCCGCACTGTCAAGCACCTAAATGCCTTTGTCCAT--GTACTCTGATGAAAGC---
TCCTT--TTTCTTTTGCTTTGATAATTTTGTTATATCTGGTGACTCGGCGCTTAGTTATAATACGCACAAATACATGTTA
AGCGTGTGTCCCT---ACCGGAGCATCAACACTCGTATGCGACAAGAAAGGGCGCGGCGTTTGGCTATGCAGTTGTCCTC
CTATG--------CTAGCTAAATACCCGTGCGTCATAAC-GAACAATAAATGAAATCTACGCAATATTCCA-AACAGCAA
AAGGGTAATACATACATAAATACAAATGAAAGAATCATTATAGTTTGGAACCATGCGTGTTGAGAGCGTGACTCTCGTGT
GACGTCAAATACGTCGTGAGAAACACCGACATCTTCCACATGTGTTCCTCCTCTGTACCGAAAAAGGGTTTCCCCCGCTT
TGTATTACAAAGCAACAACATTGATACAACCAACGATAGGTGCTGGGGCGGAAGCAGCACAGGCACGCCCAAAAGAAAAG
ACAGAAAATACAAAAGGAAGAAAATGCCGACAACGGCGGATCAACGAAAACGAAGATGACTCGCAACCGCTGCGCCCGCC
GGAGAAGTCCACCACGCTCCTAGCACCACGAAACGCCGCATACCAAGCAACACCTTCAAGAAGGAACGCGACGACAACGA
CGCTGCTACCGGACATGGCCTAGGGTTTCCCCCGGTACGCGAAGGGCCGTGGGAGGGAAGGAGGATATCCGACGCCCTTC
AGGAAGGCACGGCGGCGCCCACAGGCGTCACCGCGTCGGTGCCGAACAAGCCGACAAGGA
>chr5A_948
TCTCTCTCCTTGGATTGACCGGC---------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------CCCACTTGCTCAGCGACACGACTCGCGTCCACCTGCCTGCCTGCCGGTCTAGTCGCCACA-CCGCAGAGCT
TTGGT----TCGCAGCGATGGCGACCGACCGCCGCCTCCGCGACCTGCTCCTCCTCGCCGCGGCGCTCCTGCTCTCCGCC
TCCTGCGCCGCCGCCGCCGACTTCGAGTACTGCAGTGAGTGCTCCGAGCTCTCCTTTCGCGGCTAAATCGTCCCCGTTTT
GACTTTTGAGATTCC-GCGGATTGTGTATGCGATGCGAGCTTCTGTTGGTGTTTGGTTCCGCAGAAAAGGGGCGCCACTA
TCCGGTGAAGGTGAGCGGCGTGGAGATCGTCCCCGACCCCGTCGTGCGCGGCGAGCCCGCCACCTTCAAGATCTCCGCCT
CCACCGGTAAGATTTCGTCGAATAGCCTGAACTCCTTGCGATTTGGCTTGTGAATTGTGGCGCGGTGTGCTCATGACTGC
TGTCGGCCAACTTGAATCTACTCCCTCGGTTCCTAAATATTTGTCTTTCTAGACATTTCAAATGACTAGTACATACGGAT
GTATGTAGACATATTTTAGAGTGTAGATTCACTCATTTTGCTCCGTATGTAGTCACTTGTTGAAATGCCTAGAAAGACAA
GTATTTAGAAACGGAGGGAGTAGCTTGTTAGTAGAGTACTCCTTGTTA-TGGCTTATTGTTGGTAGCAGCCTACTCCAGA
GTTTAGATCGGTGTCTCCGTGTGTATGTGGTAGTCAGATCAAATCGATGCACTTTTGCTTGTTTTTT-GATGTGTCAATT
TTTTCGAGC------AATCAAATTAGTGCCCTGCTGAAGGTTTGGCTGGCCCTATCCATGTACTGTTATATGTGAATT-A
GTCATGTCCGCGGTAACATTTCAAGTTTTCAACC--GAATTGGAGTTTTGTGAAGGACCTAATGTGGTGTGTT--AGGAA
CTGAGATTTGGGGAATATGTCTCTTTAGGTGTTTTTGTAAGACTTCTTTGGAGTTTGGACAA---GGCAGCTGTTACTGT
CTTTCTATATTTTGCACCTGCATGTTTGGATTGTGGAACGTCCAATATTTGTTGGCCGCAAATTGCAGTAATGCGTGCAT
GTTTATCGGCCTTACTTTCACGACTTCCCTGTGTTTGTCGATGCTTGTATTTGAGTTTGCCAAGGCTTCCTGAGTCTCTT
AAAATTCATCTGACATGTCAACCGAAATGGT--------TTGTAGGAGTATGTCCCAGTTAGTTGTTCTGATAGCCAATA
GGTGAAAGAAATGTGAGTTGTAACATGTGTTTCCTGCAAAACACTTTATATATTCCACTTCATAGTTAGTACCATGGTCG
CTAGGGCTTTAATATTGAAATTTTTGTGATGTGGATCTGGCAGGGTTTCTGCTGAAATATAGATTCTTTTTGTCTGTTGG
GCCTAGTCTATCGTGGATCTGCTACTAGTGTCTGCACACGCACACACACGCATGAGCGGCATGCACCCATATTTCACAGT
ATTTTTCTGTAACTAGAATG-TTT-TTTTTTCTAGTTGCTTCCTTGCTCTGAATCTCCCTGATACATTTTTACTATTGTT
TACACCTGGCAGATAAAACCATCACCAAAGGGAAGCTGGTGGTAGATGTGTGGTACTTCTTTTTCCACGTCGATTCAGAG
ACTCACGACTTGTGTGCTGGGACTCCCTGTCCCGCAACGGGCGAATTCGTACTAGCCAGCGAACAGACTTTGCCATCTTA
CACCCCACCAGTAAGCATACCCGCAGTGCACATTCAGTTTCGGTGCCGAACT-TGTCTAGATATTTTCCCTTGTAGTGCT
TGT-GACAGACAAGGGGCTCAATAGGCCGCTGCAAGTAAGATCACATCTAGACATCCTGACGTTTTGTGTTGCTGTGATG
TGCTTCAGGGTTCTTACAGTCTCCAGATGAAGCTGCTGGGAGACAAGAACGAGGAGCTGACCTGCATCTTGTTCGGGTTC
AGCATCGGGTTCGTCGCACCTGTCGCCATTATGTGAACCAAATATGTGCCGCGACCCAAACACAC-------CCTTGGTT
GCAGTTGCAAAGAGCCACCATGGTCCACGGATGTATGTATGTACCTGCAGAACTCTCTAAAATCTGAATCACCCCGAGTG
GGAGAGCATGTGTTGGACTGAGCCGTTTTATTCAGAGTTGCTGCCAGTGCGTGTTTTCTGAGTGTTGAATGTCGCTTGTG
TGTGTGTTTTACATGTGTGGTTGGGCTCCGCGGTTGCTTTCGACGAACCATGGGCATTTTGGGTGATTGGTTGGGGCCGG
TGCCGCATTCATCCTGTTGTGATGGCCCGACAAGGGCGTCCATCCGTGGAGGACCTGTCGTGGGTTGCTGCTAGCACGCT
GTCCACCGAGGCAGAGAAGATAGCGTCGCACTGTGAAGCACCTAAATGCTTTGTCTATGTAGTACTCTGATGAAAGCGGC
TCCTT--TTTCTTCTGCTCCGATGATTTTGTTATCTCTGATGACTCAGCGCTTAGTTATAATACGCACAAATAGATGTTA
AGCATGTGTCCCT---ACTGGAGCATCAACACTTGTATGCGACAAGAAAGGGTGCGGCGTT-GGCTATGCAGTTGTCCTC
CTATG--------GTAGCTAAATACCCGTGCGTCATAACGGAACAATAAATGAAATCTACGCGATATTCCACAACAGCAA
AAGGGTAATACATACATAAATACAAATGAAAGAATCGCTATAGTTTGGAACCATGCGTGTTGAGAGCGTGACTCTCGTGT
GACGTCAAATAAGTCGTGAGAAACACCGACATCTTCCACATGT-TTCCTCCT----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------
>chr5B_978
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------CTCACCGATGCGGCTCGTGTCCACCTGCTCC-------GTCTAGTCGCGACACCCGCACATCT
GGTTCGCAGTCGCAGCGATGGCGCCCAACCACCGCCCCCGCGACCTGCTCCTTCTCGCCGCGGCGCTCCTGCTCTCCGCC
TCCTGCGCCGCCGCCGCCGACTTCGAGTACTGCAGTGAGTGCTCCGAACTCTCCTTTTGCGGCTAAATCATCCCCGTTTT
GACTTCTGAGATTCCGGCGGATTGTGTGTGCGATGCGAGCTTCTGTTGGTGTTTGGTTCCGCAGAAAAGGGGCGCCACTA
TCCGGTGAAGGTGAGAGGTGTGGAGATCGTCCCCGACCCCGTCGTGCGCGGCGAGCCCGCCACCTTCAAGATCTCCGCCT
CCACCGGTAAGATTTCGTCGAATAGCCTGAACTCGTTGCGACTGGGCTTGTGAATTGCGACGCCGTGTGCTCATGACTGC
TGTCGGGCAACTTGAATCTA------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------GCTTGTTAGTAGAGTACTCCCTCTTATTGGCTTATTGTTGGTAGCAGCCTACCCCAGA
GTTTAGATCGGTGTCTCCGTGTGTATGTGGTAGTCAGATCAAATCGATGCACTTTAGCTTGTTTTTT-GATGTATCAATT
TTTTCGAA------GAATCAAATTAGTGCCTTGCTGAAGGCTTCGCTGGCGCTATCCATGTACTGTTATATGTGAATTTA
GTCATGTGCGCGGTAACATTTCAAGTTTTCAACCATGAATTGGAGTTTTGTGAAGGACCTAATGTGGTGTGTT--AGAAA
CTGAGAATTGGGGAATATGTCTCTTTAGGTGTTTCTGTAAGACTTCTTTGGAGTTTGGACAA---GGCAGCTGGTACTGT
CTTTCTATATTTTTCACCTGGATGTTTGGACTGTGGAACGTCCAATTTTTGTTGGCTGCAAATTGCAGTGATGCGTGCAT
GTTTGTCGGCCTTACTTTCATCACTCCCCTCTGTTTGTCGATGCTTGTATTTGAGTTTGCCGAGGGTTCCCGAGTCTCTT
AAAATTCACCTCACATGTCTACCGAAATGGTTTGTAGCCTTGTAGGAGTATGTCCCAGTTAGTTGTTCTGATAGCCAAGA
GGTGAAAGAAATGTGAGTTCTAACATGTGGTTCCTGCAAAACACTTTATAGATTCCATTCTG-----AGTACCATGGTA-
----GGCTTTAACATTTAAATTATTATGACGGGGATCTGGCAGGGTTTCTGCTGAAATATAATTTCTTTTTGTCTGTTGG
GTCTAGTCTATCCTGGATCTGCTACTAGTGTCTGCACACGCACACACACGCATGAACGGCATGTACCCATATTTCACTGT
ATTTTTCTGTAACTAGAATG-TTTGTTTTTTCTAGTTGCTTCCGTCCTCTGAATCTCCCTGATACATTTTTACCATTGTT
TACACCTGACAGATAAAACCATCACCAAAGGGAAGCTGGTGGTAGATGTGTGGTACTTCTTTTTCCACGTCGATTCAGAG
ACTCATGACTTGTGTGCTGGGACTCCCTGTCCCGCAACAGGCGAATTCGAACTAACCAGCGAACAGACCTTGCCATCTTA
CACCCCGCCAGTAAGCATACCCGCAGTGCACACTCAATTTCGGTGCTGAACT-TGTCTAGATATTTTCCCTTGTAGTGCT
TTGAGATAGACGAGAGGCTCAATAGGTCGCCGCAAGTAAGATCACATCCAGGCATCCTGACGTTTTGTGTTGCTGTGATG
TGCTTCAGGGTTCTTACAGCCTCCAGATGAAGCTGATGGGAGACAAGAACGAGGAGCTGACCTGCATCTCGTTCGGGTTC
AGCATCGGGTTCGTCACGCCTGTCGCCGTTATGTGAACCAAATATGTGCCGCGAACCAAACACACCCTTGGACCTTGGTT
GCAGTTGCAAAGAGCTAGCACACCAC------GTATGTATGTACCCGCAGAACTG-------TCTGAATCACCCCGAGTG
AGAGAACCTGTGTTGGACTGAGCCGTTTTATTCAGAGTTGCTGCCAGTGCGTGTTTTTTGATTGTTGAATGTCAGGTTTG
TGTGTGTC-TACATGTGTGGTTGGACTCGGCGGTTGCTTTGGACGAATCATGGGCGTTTTGGGTGATTGGTTGGGGCCGG
TGCCGCATTCATCCTG---TGATGGCCCGACAAGGGCGTTCATCTGTGGAGGACCTGTCGTGGGTTGCTGCTAGCACGCT
GTCCACCCAGGCAGAGA---TAGCGCCGCACTGTCAAGCACCTAAATGCTTTGTCTATGTAGTACTCTGATGAAAGC---
TCCTTTCTTTCTTCTGCTCTGATGATTTTGTTATATCTGATGGCTCATCGCTTAGTTATAATACGCACAAATACATGTTA
AGCATGAGTCCCCACCACTGGTGCATCAACGATCATATGCGACAAGAAAGGGCGCAATA-TTGGCTACGCAGTCGTCCTC
GTATGGTAGAGTACTAGCTAAATACCCGTGGGTCATAATGGAACAATAAATGAAATCTACGCAATATTCCACAACAGCAA
AAGGGTACACATAG-----ATACAAATGAAAGAATCGTTATAGTTTGGAACCATGCGTGTTGAGCGTGT-----------
--CGGCAAACACGTCGTGAGAAACACCGACATCTTCCACACAT-TTCCTCCTCTGT------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------
>SNPs
--S--SSSSS-SS-SS-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSS-------S----S----S-----------------------------------------------------
S-----------------------S-S-----------------------------------------------------
------------------S-----------------S---------------------S-S------S------------
----S-S-------------------------------------S------S-------------S--------------
---------------------S------------------------------S---------------------------
------------------------------------------S-S-----------------------------------
-----S--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------S--------------S--------------------------------------S--S----S----
--------SSSSSS--------S------------------S--------------------------S-----------
----S---------------------------------------------------S----SSS---------SS-----
---------------------------S----------------S-----------------SSS--------------S
-S------S-SSSS-SS----------------------S---------S-----S-S----------------------
------S---------------------------------S---------S---------------------------S-
----------S----------------------------------S---------------S------------------
------S-------------------------------------------------------------------------
----------------------S------------------------------------------------S--------
--------------S----------------------------------S------------------------------
--------------------S-----------------------------------------------------SS----
----------------------------------------------------------------S---------------
------------------------------------------S-------------------------------------
---------------------------------------S------------S---------------------------
---------------------------------------S--------------------------------S-------
----------------------------------------S---------------------------------------
------------------------------------S------------------------S------------------
-------------------------------------S--------------------S-----------------S---
----------------------------------------------------S-S----------S--------------
------------------S---S-S-------------------------------------------S-----------
--------------------------------------------------------------------------------
---SSSS-SS--S------------------------------------S--SSSSSSS---------------------
-------------S----S----S---------------S------S---------------------------------
---S--------------S-------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------S-------------------------------------------
-------------------------------------------S------------SSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_231
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------GTCGGGCGAGTCTCCATAAG---------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------
>reverse_1845
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----CGTGCGCGGTAACATTTCAA--------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------
>forward_266
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------GCCGGTACTTGTGTCTTCCA------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------
>reverse_2009
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------TTGCACCTGGGATGTTTGGA----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------
>forward_889
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------AAGTCAACTGA
AGGCCTCCG-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------
>reverse_2997
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------CCCAAATATGTGCCGCGAAC------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------
>forward_1403
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------AGCCTGAACTCCTTGCGATC-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------
>reverse_3868
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------AACCAACGATAGGTGCTGGG---------------------------------
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