>input_sequence_41747
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------------------------------------------------------------------ATGGATTGCGCAAG
CCCTGGCGGGACTGACACATCGACGGACCCAGACCTCGACAAGAATCAAGCGGTACTGATCACTAGCACATTCGTCAGCT
CTGTTTGTTATATCCTCGCTATATATGTTCGATTTCGATGTTCGGTA----GTAGCAGTAACTCTTAGTCCTTAGCAGCT
GTGGAGTTTCCCTAATGATCTTGCTGATGAGCCTTGATGGCTGAGTTTCAACGCACATGTGCAGAAACTGTTTTTCGAAA
AATAGAAATGCGCAAACACCGTTGCAA-TTTTTTGTTACAGCAAACTGCTGCTACACATGATGTTAACTGAACTTGTCTG
TGCTGATCAACAGTTCGAACGAGGGCA---TGCTGCTGCTGGGCTCACGCCTCCGGATTCCAGTCACAAATCGAATGGTG
AACTAGGTCCAAAGGTATG----GATACGGCAGACCAGCAAAACTCCAGTGCATTCATTCAGCTGCTAAA----------
----GATTTCTTCTCATTCTTTGTTGACTGAGACTGACAGACGCTCCGTCGCCTCGCCCAAAACCGTGAAGCTGCTAGGA
GAAGCCGTCTAAGAAAAAAGGTAC------TGTAGCACGATCATTTGGTGCCAGGTCGGTAAACAATACAGTAGTACAA-
GATTGTCTTGGAACCTTAATCCGTTCATCCTTTCCATGGCCCTCTTCAGGCATATGTCCAGCAGCTCGAGAGCAGCGGCC
TGAGGCTTGCTCGGCTGGAGCAGGAGCTCCAGCGAGCTCGCCAACAGGTATATATGTTCATCTTCATCTCTCCATTTTT-
--TACAGAATTCGTTCCCGTATGTATTGTTGTCCAACATATTGGTAGTAATTTGTTTTACTTATCTATCAACTCAGGGAT
TTCTCATTTCTACTTTGGGAGACCAGCCTGATTCAGAGAATGGAGATG---G---TAATAAACCAATGTTACTGTCCAGG
GATTGCTTCTTCTTTTTTTC----GCGTAAAAATTTAGTACCATTTCTCGGTCTCCAGCAGCTTCTTCGTTCTACGTGGA
GCACGCACGGTGGCTGGAGGAGCACCACAAGCAGGTAGACGAGCTCAGAGCCGCCGTCGGTGCCCACGCCGGAGACGGCG
ACCTCCAGGCCATCGTTGACACCGTCATGGCACGCTGCGACGAGATCTTCAGGCT---------------CAAGGGCGCC
GCGGCCAAGGCCGACGCCTTCCGCGTCCTGTCGGGGACGTGGGGGACCCCCGTCGAGCGGTGCTTCCTCTGGCTCGGCGG
CTTCCGGCCATCGGAGCTTCTCATGGTTCCGACCATC-ATCGTTGTAGCTTTTCGACAGATTCTGCTATGCTATTTTCGA
TCAATTTTGGGTCGAGCAAGCA-------GACGCTTCCCCTTGCCTCATTC-------TGACGTGCGTCCATGACACTGC
TGCAGCTGCTCGCGAGCAGGCTGGAGCCCCTCACCGAGAAGCAGCTCGACAGTATCGACGTCCTGCGACGTTCCTCCCTG
CAAGCCGAAGAAGCACTCTCGAGAGAGATGGAAGCGCTGCGACAGTCGGTCACGGAAACCGTCGCGGCGGCAGGATCGTC
GTCCCTGAGCTGCTCCGACGATGATTGCACGGGCCAAATGGCGGTGGCGGTGGGAAAGCTAGGCGCCATGGAAGGCCTCC
TGCGGCAGGTAAACTT----GCGCAGGCCATGGGT-----TTCAGTTTGAACAGTCGTGTGTGCT-CAGATGCAGGG--T
TTCCTGAAGGAACTGTTTCCCGGTGATG----TGCTGTTTCGCAGGCTGATGATTTGCGACTGCGGATTCTTGAGGAAAC
GCGGCGGGTACTGACCACCCGTCAGTGCGCACGAGCGGTGCTCGTGGTCACCGACTACTTCTCCCGGATGCGCGCCCTGA
GTTCTCTCTGGATTGCACGTCCGACCACCGGAGTGAACTGA---------------------------------------
--------------------------------------------------------------------------------
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------------
>chr1B_1_TraesCS1B01G127400
AAATGACTACTAACCAGATTCCGCATCCTTGCTACAAGGGCTCTGTATCTGCCGCCATATATAGGGCATGCAGCTAGACG
CCTAGATAGCTAGATATATACACTTATTACGCCTAGACGTCGTATATAGCACTTTTTAGATTTTAGGATATTTGAATTAG
AACTATTGCTGCTAAACTGAAACTAGGCATGCGGCCATTTAGAGTGGGCGGACTGAAAAAAAAATAGAGGAGAGATGTAT
ACGGCTAATTTTGGATGGCTAGCTTCTGCATCCGTATCCGCGGACCGGTCCCTGTAG----AGACTGATGCGATGTCTGG
CTTGGGGGTCGCCG--GGAAATGTCATTAGCACCTC----AAGCACCAATACATTTA----AACTAATGCTTTGCAAGAG
A-GATATTCTCTGCCTTGACTTTACACTCGACACGCTAGCTAGCGCAACAATGAAAAGG------GGTTCTATACGCACG
GCTGCAGATTTCTAAAGATTTCCAGTCCAAAAGACCGACCGGTCCAGCTAGCCAGCGCGCCACTCTACCTGCTGCAGCCT
GTCGATCCCGCATTTGCGATAAGCGGCGGGCATCGATTCCGATTCCGCATCCGTGCTACAGGGCTGGGCTGGCTCTGTAT
CTGCCGCCATATATAGCGCATGCAGCTAGACGTACGCCTAGATGGCTAGATACACACACATTATTATCCCCACCGTCCTT
GATCGCAAGGAGATACCGCAA-GATATCTCACTTGGAAGAAGAAAAGATACCGGGAAGATATTCGCTTGCTTGCTTGCTT
GC----CGCACCCATAGATTTGTCGGCCACGTGTATCATTCCGGTCTCCTGTTCGCAGCTGCTGCATATAATTGCCTGTC
AGTTCTCTCGAGGACCAATGATCTGTTGCTGCCCGTGCAACTCTCTCTACTTTCTTCTTCTGCTGCTGCTCACTCTAGTA
GTCTAGTAGAATACGTAGTAGGAGTACTAATTACCCACAGGCGTGCTTGGTAGTACGAGCTTCGCCATGGATTGCGCAAG
CCCTGGCGGGACTGACACATCGACGGACCCAGACCTCGACAAGAATCAAGCGGTACTGATCACTAGCACATTCGTCAGCT
CTGTTTGTTATATCCTCGCTATATATGTTCGATTTCGATGTTCGGTA----GTAGCAGTAACTCTTAGTCCTTAGCAGCT
GTGGAGTTTCCCTAATGATCTTGCTGATGAGCCTTGATGGCTGAGTTTCAACGCACATGTGCAGAAACTGTTTTTCGAAA
AATAGAAATGCGCAAACACCGTTGCAA-TTTTTTGTTACAGCAAACTGCTGCTACACATGATGTTAACTGAACTTGTCTG
TGCTGATCAACAGTTCGAACGAGGGCA---TGCTGCTGCTGGGCTCACGCCTCCGGATTCCAGTCACAAATCGAATGGTG
AACTAGGTCCAAAGGTATG----GATACGGCAGACCAGCAAAACTCCAGTGCATTCATTCAGCTGCTAAA----------
----GATTTCTTCTCATTCTTTGTTGACTGAGACTGACAGACGCTCCGTCGCCTCGCCCAAAACCGTGAAGCTGCTAGGA
GAAGCCGTCTAAGAAAAAAGGTAC------TGTAGCACGATCATTTGGTGCCAGGTCGGTAAACAATACAGTAGTACAA-
GATTGTCTTGGAACCTTAATCCGTTCATCCTTTCCATGGCCCTCTTCAGGCATATGTCCAGCAGCTCGAGAGCAGCGGCC
TGAGGCTTGCTCGGCTGGAGCAGGAGCTCCAGCGAGCTCGCCAACAGGTATATATGTTCATCTTCATCTCTCCATTTTT-
--TACAGAATTCGTTCCCGTATGTATTGTTGTCCAACATATTGGTAGTAATTTGTTTTACTTATCTATCAACTCAGGGAT
TTCTCATTTCTACTTTGGGAGACCAGCCTGATTCAGAGAATGGAGATG---G---TAATAAACCAATGTTACTGTCCAGG
GATTGCTTCTTCTTTTTTTC----GCGTAAAAATTTAGTACCATTTCTCGGTCTCCAGCAGCTTCTTCGTTCTACGTGGA
GCACGCACGGTGGCTGGAGGAGCACCACAAGCAGGTAGACGAGCTCAGAGCCGCCGTCGGTGCCCACGCCGGAGACGGCG
ACCTCCAGGCCATCGTTGACACCGTCATGGCACGCTGCGACGAGATCTTCAGGCT---------------CAAGGGCGCC
GCGGCCAAGGCCGACGCCTTCCGCGTCCTGTCGGGGACGTGGGGGACCCCCGTCGAGCGGTGCTTCCTCTGGCTCGGCGG
CTTCCGGCCATCGGAGCTTCTCATGGTTCCGACCATC-ATCGTTGTAGCTTTTCGACAGATTCTGCTATGCTATTTTCGA
TCAATTTTGGGTCGAGCAAGCA-------GACGCTTCCCCTTGCCTCATTC-------TGACGTGCGTCCATGACACTGC
TGCAGCTGCTCGCGAGCAGGCTGGAGCCCCTCACCGAGAAGCAGCTCGACAGTATCGACGTCCTGCGACGTTCCTCCCTG
CAAGCCGAAGAAGCACTCTCGAGAGAGATGGAAGCGCTGCGACAGTCGGTCACGGAAACCGTCGCGGCGGCAGGATCGTC
GTCCCTGAGCTGCTCCGACGATGATTGCACGGGCCAAATGGCGGTGGCGGTGGGAAAGCTAGGCGCCATGGAAGGCCTCC
TGCGGCAGGTAAACTT----GCGCAGGCCATGGGT-----TTCAGTTTGAACAGTCGTGTGTGCT-CAGATGCAGGG--T
TTCCTGAAGGAACTGTTTCCCGGTGATG----TGCTGTTTCGCAGGCTGATGATTTGCGACTGCGGATTCTTGAGGAAAC
GCGGCGGGTACTGACCACCCGTCAGTGCGCACGAGCGGTGCTCGTGGTCACCGACTACTTCTCCCGGATGCGCGCCCTGA
GTTCTCTCTGGATTGCACGTCCGACCACCGGAGTGAACTGAGTTTCGACAGCCGGACA---TATTATTATTCGAGAAAAG
CAGAAGAGAACGTAGTACTGTGGACTACATGTGAACTGA---AATTAGTGAACAGATCTCTATCTCTATCTCTACTACTT
AAAAAATAAGTAGTGTTTCTTGCCCTGCCATGGACCGCGTCCTGCCATACTATTGTCCGTCCTGGCGTCGAGCGGTGCGT
CCCGGTCGGCGTCACAGGCTAGGCGATGTCAAGGGCAGGGCGTGTGGAGGCTGTCACCGAGGGAGGCAACCGATGCTGTG
GTGGTGCCGGGAAGAGGCCGCAGGCAGGGCGGCAGTAGGAGCACGACTGCCGTGTGTGTGTGTGAGAGAGAGAAAGGCGA
TGAGAGAGGACGGAAGAGGGAGATGAATCCAAAGATCAAGGAATCGCTCCTCCCTGTTGGCGCTCCTCTCCTGTCACACC
TGCATCACCAAGGGTTGATGCGGTGGACGTGTGATCATGGGACCCCCGCTGCCATGTGGCATGGGCCCACCCGTGTGTGT
GAGTGGCTGGGTATATAGCCAGCGGTAGCCAGTAGGCAAGGCGTGCGTGATTTGTATCTGAAGTAGACTCCCTCACCTA-
-CTCTGTATCTCATCTTCCTTGGCAAGAAAACTCTCTTTCAAGCCTGATCTCATCCCCTTCCCTTCCTCGATCT-GATCT
GAGCAACTGGGTCTGTGACAGTTGGTATCCAGAGCATTGATTCGCCCACCCCAAGAAAAATTCGTCGCTCCGCCTCCCCC
TTTCCTCTCGATCT-GCCGTAACATCCACTGTTGCGAGTGCGGGCTTGCTCCGGTGAGATCCACACAAAATCCCCAGCGG
GGTTGGCCGGATTTAGAGCGCG-GCGACGACGCCATCTTCCAAACCATCCGCTCAAACTCGCCACGTCCTCTCCGCCATG
TCAGAATCCACCGGAGAGCTCAAATCGATGATCCAGTCCCTTCTGTCGAGATTCGATGACAGCAAGCTCGCGGGCGACAA
GCACCTCGAGGC
>chr1A_17
TAAGCC--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------------------------GTGCGCATCGATTCCGATTCTGCATCCGTACATGCTAACAG----GGCTCTGTAT
CTGCCGCCATATATAGCGCATGCAACTAGACGTACGCCTAGATGGCTAGATACACACACATTATTATCCCCACCGTCCTT
GATCGCAAGGAGATACCGCAA-GATATCTCACTTCGAAGAAG-AAAGATACCGGGAAGATATTCGCTTGCGTGCTTGCTT
GCTCGCCGCACCCATAGATTTGTCGGTCACATGTGTCACTCCGGTCTCCTGATCGCAGCTGCTGCATATAATTGCCTGTC
AGTCCTCTCCAGGACCAATGATCTGTTGCTGCCCGTGCAACTCTCTCTGCT---TTCTTCTGCCGCTGCTCACTCTAGTA
GAT-----------------------------------------------TGGTACTAGCTTCGCCATGGATTGCGCAAG
CCCTGGTGGGACTGACACATCGACGGACCCAGACCTCGACAAGAATCAAGCGGTACTGATCACTAGCACATTCGTCAACT
CTGTTAC-------------ATACGCGCTCGATTTCGATGTTGTGTACCTCAGTTTCTGTAGCGGT----------AGCT
GTGGAGTTTCCCTAATGATCTTGTTGATGAGCCTTGATGGCTGGGTTTGAACGCACATGTGCAGAAACTGTTTTTCCAAA
AATAA--------AAAAACCTCTGCAA-TGTTTTGTTACAGCAAACTGCTGCTACACATGATGTTTACTGAACTTGTCTC
TACTGATCATCAGTTCGAACAAGGGCATGCTGCTGCTGCTGGGCTCACGCCTCCGGATTCCGGTGACAGATCAAATGGTG
AACTAGGTCCAAAGGTATG----GATACGACGGACCAGTAAAACTCCAGTG----CATTCAGCTGCGAAATACGGAGTAT
TTGTGATTTCTTCTGATTCTTGGTT------GACTCACAGACGCTCCGTCGCCTCGCCCAAAACCGTGAAGCTGCTAGGA
GAAGCCGTCTAAGAAAAAAGGTACGACTACTGTAGTGCGATCATTTGGTAAACAATATGC--------CAGGAGTACAAG
GATTAGCTTGGAACCTTAATCCGTTCATCCTTTCCATGGCCCTCTTCAGGCATATGTCCAGCAGCTCGAGAGCAGCGGCC
TGAGGCTTGCTCATCTGGAGCAGGAGCTCCAGCGTGCTCGCCAACAGGTATACATGCTCATCTTCATCTCTCCATTTTT-
TTTACAGAATTCATTCCCGTATGT-----TGTTCAACATATTG---GTAATTTGTTTTGCTTATCT---TATCCAGGGCT
TTCTCGTTTCTACTTTGGGGGACCAGCCTGATTCAGAGAACGGAGACGGTAG---TAATAAACCACTGTTACTGTCCAGG
GATTGCTTCTTCTATTTCT----TGCGTAAAAATTTAGTACCATTTCTCGGTCTCCAGGAGCTTCTTCGTTCTACGTGGA
ATACGCACGGTGGCTGGAGGAGCACCACAAGCAGGCAGACGAGCTCAGGGCCGCCGTCAGCGCCCACGCCGGAGACGGCG
ACCTCCAGGCCATCGTTGACACCGTCATGGCACGCTGCGACGAGATCTTCAGGCT---------------CAAGGGCGCC
GCGGCCAAGGCCGACGCCTTCCGCGTCCTGTCGGGGACGTGGACGACCCCCGTCGAGAGGTGCTTCCTCTGGCTCGGCGG
CTTCCGGCCATCCGAGCTTCTCAAGGTTCCGACCATCGATCGTCGAAGCTTGTCGACAGATTCTGCTAG--TATTTTCGA
TCAATTTTGGGTTGAGCAAACACCAAACAGGCGCTTCCCCTTGCCTCTTTC-------TGACGTGCGTCCATGACACCGC
TGCAGCTGCTCGCGAGCAGGCTGGAGCCCCTCACCGAGAAGCAGCTCGACAGTATCGATGTCCTGCGGCGTTCCTCCCTG
CAAGCCGAAGAAGCACTCTCGAGAGAGATGGAAGCGCTGCGACAGTCGGTCACCGAAACCATCGCGGCGGCAGGATCGTC
GTCCCAGAGCTGCTCCGACGATGATTGCACGGGCCAAATGGCGGCGGCGGTGGGAAAGCTTGGCGCCATGGAAGGCCTCC
TGCGGCAGGTAAACTT----GCGCAGGCCATGGGT----GTTCAGTTTGAACAGTCGTGTGCGCTTCAGATGCAGGGTTT
TTCCT----GAACTGTTTCCCGGTGATC----TGCTGTTTCTCAGGCTGATGATCTGCGACTGCGGATTCTCGAGGAAAC
GCGGCGGGTACTGACCATCCGTCAGTGCGCACGAGCGGTGCTCGTGGTCAGCGACTACTTCTCCCGGATGCGCGCCCTGA
GTTCTCTCTGGATCGCACGTCCGACGACCGGAGTGAACTGAGTTTCCACAGTCGGACATATTATTATTATTCGAGAAAAG
CAAAAGAGAACGTAGTACTATGGACTGCATATGAACTGAAATAATTAGTGAACAAATCTCTATCTCTATCT---------
--------------------------------------------------------------------------------
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------------
>chr1D_172
--------------------------------------------------------------------------------
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-----------CTAAACTGATATTAGAAATGCCGCTATTTAAAGTGTGCGGACTGAAAAAAATGGAGGATGA--ATGTAT
GCAGCTAGCTTTGGCTGGCTGGCTTCTGCATCCGTGTGTGCGGACTAATTCCTCTGCCTGCAGACGGTTGTGGTGTCTGG
TTTTGGAGTTGCTTTCGGAGATGTCCTTAACACCTCACTTAAGCACCAATACATTCAAGAGAACTAATGCATTGGAAGAG
GTGATATCCTCTGCCTCGACTCTACACTCGACACGCTAGCTAGCGCAACAATGAAAAGGCTGCTTGGTTCTATACGCACG
GCTGCAGATTTCTAAAGATTTCGAGTCCAAAAGACCGACCGGTCCAGCTAGCCAGCGCGCGACTCTACCTAGTGCAGCCT
GTCGATCCCACATTTGCGATAAGCGGTGGGCATCAATTCCGATTCCGCATCCGTGCTACA-----GGGCTGGCTCTGTAT
CTGCCGCCATATATAGCGCATGCAGCTAGACGTACGCCTAGATGGCTAGATGCACACACATTATTATCCCCACCGTCCTT
GATCGCAAGGAGATACCGCAAAGATATCTCACTTCGAAGAAGAAA-GATACTTGGAAGATATTCGCTTGCTTGCT-----
-------GCACCCATAGATTTGTCGGCCACATGCATCATTCTGGTCTCCTGATCGCAGCTGCTGCATATAATTGCCTGTC
AGTCCTCTCGAGGACCAATGATCTGTTGCTGCCCGTGCAACTCTCTCTACTTTCTTCTGCTGCTGCTGCTCACTCTAGTA
GAATAC-----------------GTGCTAATCACCCACAGGCGTGCTTGGTGGTACTAGCTTCGCCATGGATTGCCCGAG
CCCTGGTGGGACTGATACGTCGACGGACCCAGACCTCGACAAGAATCAAGCGGTACCGATCACTAGCACATTCGTCAGCT
CTGTTTCTTATATACTCGCTATACATGTTAGATTCCGATGTTCTGTAGTACGTAGCAGTAACTCTTAGTCCTTAGCAGCT
GTGTAGTTTCCCTAATGATCTTGTTGATGAGCCTTGATGGATGAGTTTCAACGCACATGTGCAGAAACTGTTTTCGGGAA
AATAAAAATGCGCAAAAACCGCTGCAATTTTTTTGTTACAGCAAACTGCTGCTACACACGATGTTTACTGAACTTGTCTG
TACTGATCAACAGTTCGAACAAGGGCA---TGCTGCTGCTGGGCTCACACCTCCGGATTCCAGTGACAAATCAATTGGTG
AACTAGGTCCAAAGGTATCGATCGATACGACAGACCAGTAAAACTCGAGTG----CATTCAGCTGCTAAA----------
----GATTTCTTCTCATTCTTCGCT------GACTGACAGACGCTCCGTCGCCTCGCCCAAAACCGTGAAGCTGCTAGGA
GAAGCCGTCTAAGAAAAAAGGTAC------TGTAGCACGATCATTTGGTGCCAGGTCGGTGGACAGTATAGTGCAAGGAG
GATTGTCTTGGAACCTTAATCCGCTCATCCTTCCCATGACCCTCTTCAGGCATATGTCCAACATCTCGAGAGCAGCGGCC
TGAGGCTCGCTCAGCTGGAGCAGGAGCTCCAGCGTGCTCGCCAACAGGTATATTTGCTCATCTTCATCCCTCCATTTTTA
TTTACAGAACTTATTCCCGTATGTATTGTTGTCCAACATGTTGGTAGTAATTTGTTTTGCTTATCTATCTATCCAGGGCT
TTCTCGTTTCTACTTTGGGGGACCAGCCTGATTCAGAGAATGGAAATG---GTAATAATAAACCACTGTTACTGTCCAGG
GAATAGGGATTGCTTGTATTTTCTGCGTAAAAATTTAGTACCATTTCTCGGTCTCCAGCAGCTTCTTCGTTCTACGTGGA
ATACGCACGGTGGCTGGAGGAGCACCACAAGCAGGTAGACGAGCTCAGGGCCGCCGTCAGCGCCCACGCCGGCGACGGCG
ACCTCCAGTCCATCGTTGACACCATCATGGCACGCTCCGACGAGATCTTCAGGCTCAAGGGCGCCGCGGCCAAGGGCGCC
GCGGCCAAGGCCGACGCCTTCCGCGTCATTTCGGGGACGTGGATGACCCCCGTCGAGCGGTGCTTCCTCTGGCTCGGCGG
CTTCCGGCCGTCGGAGCTTCTCAAGGTTCCGACCATCCATCGTTGAAGCTTGTCGACAGATTCTGCTAG--TATTTTCGA
TCAATTTTGGGTTGAGCAAACACCAAAAAGACGCTTCCCCTTGCCTCTTTAATCTTTATGACGTGCGTCCATGATACTGC
TGCAGCTACTCGCGAGCCGGCTGGAGCCCCTCACCGAGAAGCAGCTCGACAGCATCGACGTCCTGCGACGTTCCTCCCTG
CAAGCCGAAGAAGCACTCTGTCGAGAGATGGAAGCGCTGCGACGGTCGGTCACGGAAGCCGTCGCGGCGGCAGGATCGTC
GTCCCTGAGCTGCTCCGACGCTGATTGCACGGGCCAAATGGCGGTGGCGGTGGGAAAGCTTGGCGTCATGGAAGGCCTCC
TGCGGCAGGTAAACTTTTTTGCACAGGCCATGGGTGTTCGTTCAGTTTGAACATTCGTGTGCGCTTCAGTTGCAGGG--T
TTCCT----CAACTGTTTCCCGGTGATCGATCTGCTGTTTCGCAGGCTGATGATCTGCGGCTGCGGATTCTTGAGGAAAC
GCGGCGGGTACTGACCACCCGTCAGTGCGCACGGGCGGTGCTCGTGGTCACCGACTACTTCTCCCGGATGCGCGCCCTGA
GTTCTCTCTGGATTGCACGTCCGACCACCGGGGTGAACTGAGTTTCGACAGTCGGACAC---ATTATTATTCGAGAAAAG
CAAAAGAGAACGTAGCACT-------------------------------------------------------------
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>chr3B_3308
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-----------------------------------------------------------------------TGTCACACC
TGCATCACCAATGATTGATGCGGTGGACATGTGATGGTGGGACCTCCGCTGCCATGTGGCATGGGCCCACACGCGTGTGT
GAGTGGCTGGGTATATAGCCAGCTGTAGCCAGTAGGCAAGGCATGCGTGATTTGTATCTGAACTGGATT-CCTCACCTAC
TCTCTGTATCTCATCTTCCTTAGCAAGAAACCCTCCTTCCAAGCCCGATCTCATCCCCTTCCCTTCCCCGATCCAGATCT
GAGCAATTGGGTCTGTGACAGTTGGTAATCAGAGCCTCCATTCCCCACCACCAAGTTTCTCCGCCGCCACTCTCAC----
---CCTCTCGATCGAGCCGTAACATCCACACTGTGGGTGTGGAACTTGCTCCGGCGAGATCCACCCGAAATCCCCAGCGG
GGTTGGCATGATTTGGAGCAAGTGCAACGGCGCCGCCGACCAAACCGCCTGCCCAAACCCGCCACATCATCGCCGCCATG
TCCGAATCAACCGGAGACCTGAAATCGATGCTCCAGTCGCTCTTGACGCGGTTCGATGAAAGCAAGCTCGCGGGCGACAA
GCATCTCGA---
>chr3A_3308
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-----------------------------------------------------------------------TGTCACACC
TGCATCACCAGTGGTTGATGCGGTGGACGTGTGATGGTGGGACCCCCGCTGCCATGTGGCATGGGCCCACCCGCGTGTGT
GAGTGGCTGGGTATATAGTCAGCTGTAGCCAGTAGGCAAGTCATGCGTGATTTGTATCTGAACTGGATT-CCTCACCTAC
TCTCTGTATCTCATCTTCCTTGGCAAGAAACCCTTCTTCCAAGCCCGATCTCATCCCCTTCCCTTCCCCGATCCAGATCT
GAGCAGTTGGGTCTGTGACAGTTGGTAATCAGAGCCTCCATTCCCCACCACCGATTTTCTCCGCCGCCACTCTCAC----
---CCTCTCGATCAAGCTGTAACATCCACGATGGGGGTGTGGAACTTGCTCCGACGAGATCCACCCGAAATCCCCAGTGG
GGTTGGCCTGATTTGGAGCGAGTGCAACTGCGCCGCCGACCAAACG-TCTGCCCAAACCCGCCACATCATCGCCGCCATG
TCCGAATCAACCGGAAAGCTGAAATCGATGCTCCAGTCGCTCTTGACGCGGTTCGATGAAAGCAAGCTCGCGGGCGACAA
GCATCTCGAAGC
>SNPs
S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSS---------S-S---SS----S--S-----S----S---------------SSS--SSSSSSS------
S-S----SS-----S-----S--------------S-SS------SSS-S---S-SS--------S-S--S-S-------
S--S--S--S--SS-----S-----S---S-------------------------S--------------S---S-----
S------S--------S----S----------------------------------------------------------
----------------------S-------------------------------------S---------SS--------
---------S----------------S---------------------------------SSS-S---------------
--------------------------------------------------------------------------------
----------------------------------S---------------------------------------------
------------------------------S--------------------S----------------------------
---S----------------------------------------------------------------------------
-SS--SSSSSSSSSSSSSSSSSS--S-----S-------------------S----S-----------------------
------S-------------------------------------------------------------------------
------S------S---------S-------------------S------------------------------------
-----------------------S--------------------------------------------------------
----S-----------S----S-------------------------------------------S--------------
-S------------------S-------------------------------------------S-------S-------
-----------------------------S--------S------------SSSS-------------------------
---------------------S---SSSSSS-------------------------------------------------
------------------------------------------------------------SS---S--------------
--------------------------------------------------------------------------------
------------S---------------------S---------------------S-----------------------
------------S---------------------------------------------S----------S-SS-----S-
-----S-------------S---------------------------------------------S--------------
-----------------S-S------------------------------------------------------------
SS----------------------------------------------S---------S-S-------------------
--------------------------------------------------------------------------------
------------------------------------------SS------------------------------------
-----------------------S---------------------S-----S----------------SSS---------
------------S------S---------------------------S--------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------S-------------------
-------------------------------------------------------------S------------------
-----SSSS------------------S--------------------------S-------------------------
--------------------------------------------------------------------------------
---------------------------------------------------S----------------------------
--S----------------S------S---S-----------------------S----------------SSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------
-----------S-----------------------SS------------------------------------S------
-----------------------S------------------S-------------------S-S--S-S----------
------------------------------S-SS----S------S---------------------S-----S------
------S--------------------SS------S-SS----S--SS-S-----SSSSSSSSSSSS-S-SSS-S-SSSS
SSS----------S---------------SS-S-S-SSSSS-SS----------S---------S-S-------------
--------S-----S-----S----S---S----SS-SS-------S--S--S-----S------S--S--S--------
--S-----S-----------S---------S-------S--SS--S--S-S--------S--------------------
---S-----S--
>forward_306
--------------------------------------------------------------------------------
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----------------------------------------------GACCGGTCCCTGTAGAGACT--------------
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>reverse_1548
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---------------------------CTGAGACTGACAGACGCTCC---------------------------------
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>forward_308
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------------------------------------------------CCGGTCCCTGTAGAGACTGA------------
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>reverse_1550
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-----------------------------GAGACTGACAGACGCTCCG--------------------------------
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>forward_321
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-------------------------------------------------------------AGACTGATGCGATGTCTGG
C-------------------------------------------------------------------------------
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>reverse_1551
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------------------------------AGACTGACAGACGCTCCGT-------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------
>forward_1492
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------GACCAGCAAAACTCCAGTGC----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------
>reverse_3357
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------GCGA
TGAGAGAGGACGGAAG----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------
