>input_sequence_41631
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-----------------------ATGCCCTTGCGGGCGTACGTGGGCATGCTGGCACGCGGAGCCAGGCCTGACGCATAC
ACGTTCCCGCCGTTGCTCAAGGCGGTGGCGGCGGAGCGGGGTGCTGTGGCGCCGTCCGTCGGAGACTCTGTCCACGCGCA
TGTGGTTAAGTTTGGGCTGGAGCTCAACGCCCACGTGGCGAGCTCGCTGGTGCTCATGTACGCTGCCAGGGGCGACGGCG
TGATGGCGCGTGCGCTGCTGGACGTGCAGCCTGCCGGAGGTGGCGGCACGCCCGTTGTGTGGAATGCGCTTATGTCCGGC
CACAAGAGAAGCAGGCAGTTCAGGTTGTCATGCTGCTCATTCCTGGATATGGTGAGGGCTGGCGTTGTGCCCACGCCGGT
CACCTACATCACAGTGCTGTCGGCATGTGGCAAAGGCAACGACGTCCTGCTCGGAATGCAGCTGCACAAGCGCGTCATTG
AGAGCGGGGTGTTGCCTGACCTCAAGGTGGAGAATGCGCTTGTTGGTATGTATGCCGAGTGTGGCGAGATGGAAGCAGCT
TGGGATTTGTTTGAGGTCATGCAGGTGAGGAACATTGTCTCCTGGACGTCGGTAATCTCTGGGTGTGTAAGACTAGGCCA
GGTTGATCGAGCCAGGGTACTCTTTGATCGTATGCCTGAGAGGGACACCGTCTCATGGACTGCGATGATTGATGGTTATG
TACAAGCTGGCCAGTTCCGAGAGGCATTGGAGATGTTTCGTGAGATGCAACTTAGCAAGGTGAGGGCAGATGAGTTCACC
ATGGTCAGCATAGTCACGGCATGCGCGCAGCTTGGTGCTTTAGAGACAGGGGAGTGGGCTAGAATTTACATGAACAGACA
TGGGATCAAGATGGATACTTTTGTTGGGAATGCGCTCATAGACATGTATTCAAAGTGTGGGAGCATCGAGAGGGCAATGG
ACGTGTTCAATGAGATGCACAGTAGAGATAAGTTTACTTGGACCGCTATTATACTTGGTCTTGCAGTGAATGGCCATGGT
GAGGAGGCTATCAATATGTTTGACAGGATGCTTAGGGCGTTTGAAGCTCCAGACGAGGTGACCTTCATTGGCGTTCTCAC
TGCCTGTACTCATGCTGGCTTGGTTGACAAAGGACGAGACTTCTTTCTCAGCATGACTGTGACCTACAGGATTGCTCCTA
ATGTGATGCATTATGGATGCATGATCGACCTCCTTGGGCGAGCTGGGAAACTAAGAGAAGCATTGGAGACAATAGGTAAA
ATGCCCATGAAACCCAGCTCTGCAATCTGGGGGACCCTGCTGGCAGCTTGTAGGGTCCATGGTAACTCAGAGATAGGTGA
ATTGGCAGCAGAACGTCTCCTTGAGTTGGATCCAGAGAACAGTATGGCCTACGTCCTTTTGTCCAATCTGTATGCAAAAT
CTAATAGATGGGGAGATGTCCGGTGGCTTAGGCAGGTAATGATGGAGAAAGGAATCAAGAAAGAGCCTGGTTGCAGTCTT
ATTGAAATGAATGGCACAATTCACGAATTTGTAGCTGGCGATAGATCTCATCCTATGAGCGAAGAAATCTATTCTAAATT
GGACAAGGTACTCACGGATTTGAAGAATGATGGATATGTACCTGATGTAACCGAGGTCTTTGTTCAAGTCACAGAAGAAG
AAAAACAAAAAGTTCTTTATTGGCACAGCGAAAAGTTGGCTGTCGCTTTTGCATTACTCGTATCAGAATCCAGTGTGACA
ATAAGGATCGTGAAAAACTTGAGGATGTGTTTAGACTGCCACAATGCAATTAAATTGATCACCAAGTTATATATGAGAGA
GATTGTTGTGAGGGACAGGACACGCTTCCATCATTTTAGACATGGACTCTGTTCTTGTAAGGACTATTGGTAA-------
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>chr3A_1_TraesCS3A01G124400
CCAAAAACGAAGCGTTTAGCTGTCGCTCAGCGCTTAAGCGACGCTTAAAAACGCTTTCTTGAACATTGAAAAAAACCAAA
GCCATTTGATGTTAATGATTTTTTAAAATCTCCGATTACCTTGAGCTTGTTTGGCAATATTGCTTGTCTATATCAAAGGA
CCATAAAGTGAATTTTTGAAAAAAAATAACAAATTTATGGCGCATGCAGTTTTTATAATATTTTTACTATCTTTTTCTGA
AAATAGATGGGTGCGACAATGCACGCAATCAGTGATCTAGTACATTTGTAAAATATACTACTTTGTAAAAGAAAATCAGA
TGGATTCCTAGTACACATATTCTATCCATGCGGGTTGGAGATCTACAAAATCATACACACATATGTAGAATTG-------
----AAACCTGAGACCCCGTTTGAAATGGATGTGTTGTTTTGTGCACACTGATATTTAATTAAAGTTTGAGCTAAATATT
GGTGGCCACACAAATTTTACACCGATTCCAAACAGCCTCTTATATAGAGAGAAAAAGAAAAAGAAAA------ACAGAGC
GGAAGGCGAGCGAAGTCTTCATTCCCCGCTCGAAGGCCACCGCTATCCCGCGGCCGGAAGGCCACCGCTGCT-GTTGGTT
GCCGACCCTGCTCGCCGGAGCGCAGCTCCACGTGAG--------CACGTCCAGCGATAGG--------------------
TCCCTCCGTCGTGATGCGCCGGGACCTCCTCGCTCGCCCGTGTTTTCTAATCT------GCTGCCGCTGTCGTTCGTAGA
CCAGACGTGCTCGGTGCGCCACCCCCCAGTGCAGTCCATCTCGTCGGCTCATCCTTCCTTTCCCTGCTGCGGTAAATCAA
TCTACCCGCGGTTAACGCGACGATGCCGCGGTAAATCAATCTACCCGCGTTTAACGCGACGACGGCGCGGTGAGGGGTGC
G-CGGGGAAGGCTGGCACCCGCATTGCTCTGCGCCCGCGGC-TGTTCGACGGAATTCCCAGCC---------CACGGTGC
TGGTTTGGCTGCCAGGGCCGAGGATGCCCTTGCGGGCGTACGTGGGCATGCTGGCACGCGGAGCCAGGCCTGACGCATAC
ACGTTCCCGCCGTTGCTCAAGGCGGTGGCGGCGGAGCGGGGTGCTGTGGCGCCGTCCGTCGGAGACTCTGTCCACGCGCA
TGTGGTTAAGTTTGGGCTGGAGCTCAACGCCCACGTGGCGAGCTCGCTGGTGCTCATGTACGCTGCCAGGGGCGACGGCG
TGATGGCGCGTGCGCTGCTGGACGTGCAGCCTGCCGGAGGTGGCGGCACGCCCGTTGTGTGGAATGCGCTTATGTCCGGC
CACAAGAGAAGCAGGCAGTTCAGGTTGTCATGCTGCTCATTCCTGGATATGGTGAGGGCTGGCGTTGTGCCCACGCCGGT
CACCTACATCACAGTGCTGTCGGCATGTGGCAAAGGCAACGACGTCCTGCTCGGAATGCAGCTGCACAAGCGCGTCATTG
AGAGCGGGGTGTTGCCTGACCTCAAGGTGGAGAATGCGCTTGTTGGTATGTATGCCGAGTGTGGCGAGATGGAAGCAGCT
TGGGATTTGTTTGAGGTCATGCAGGTGAGGAACATTGTCTCCTGGACGTCGGTAATCTCTGGGTGTGTAAGACTAGGCCA
GGTTGATCGAGCCAGGGTACTCTTTGATCGTATGCCTGAGAGGGACACCGTCTCATGGACTGCGATGATTGATGGTTATG
TACAAGCTGGCCAGTTCCGAGAGGCATTGGAGATGTTTCGTGAGATGCAACTTAGCAAGGTGAGGGCAGATGAGTTCACC
ATGGTCAGCATAGTCACGGCATGCGCGCAGCTTGGTGCTTTAGAGACAGGGGAGTGGGCTAGAATTTACATGAACAGACA
TGGGATCAAGATGGATACTTTTGTTGGGAATGCGCTCATAGACATGTATTCAAAGTGTGGGAGCATCGAGAGGGCAATGG
ACGTGTTCAATGAGATGCACAGTAGAGATAAGTTTACTTGGACCGCTATTATACTTGGTCTTGCAGTGAATGGCCATGGT
GAGGAGGCTATCAATATGTTTGACAGGATGCTTAGGGCGTTTGAAGCTCCAGACGAGGTGACCTTCATTGGCGTTCTCAC
TGCCTGTACTCATGCTGGCTTGGTTGACAAAGGACGAGACTTCTTTCTCAGCATGACTGTGACCTACAGGATTGCTCCTA
ATGTGATGCATTATGGATGCATGATCGACCTCCTTGGGCGAGCTGGGAAACTAAGAGAAGCATTGGAGACAATAGGTAAA
ATGCCCATGAAACCCAGCTCTGCAATCTGGGGGACCCTGCTGGCAGCTTGTAGGGTCCATGGTAACTCAGAGATAGGTGA
ATTGGCAGCAGAACGTCTCCTTGAGTTGGATCCAGAGAACAGTATGGCCTACGTCCTTTTGTCCAATCTGTATGCAAAAT
CTAATAGATGGGGAGATGTCCGGTGGCTTAGGCAGGTAATGATGGAGAAAGGAATCAAGAAAGAGCCTGGTTGCAGTCTT
ATTGAAATGAATGGCACAATTCACGAATTTGTAGCTGGCGATAGATCTCATCCTATGAGCGAAGAAATCTATTCTAAATT
GGACAAGGTACTCACGGATTTGAAGAATGATGGATATGTACCTGATGTAACCGAGGTCTTTGTTCAAGTCACAGAAGAAG
AAAAACAAAAAGTTCTTTATTGGCACAGCGAAAAGTTGGCTGTCGCTTTTGCATTACTCGTATCAGAATCCAGTGTGACA
ATAAGGATCGTGAAAAACTTGAGGATGTGTTTAGACTGCCACAATGCAATTAAATTGATCACCAAGTTATATATGAGAGA
GATTGTTGTGAGGGACAGGACACGCTTCCATCATTTTAGACATGGACTCTGTTCTTGTAAGGACTATTGGTAACTCATCA
TGCATCGATGATGTAAAACAAGTTAATATCAGTTGTCCTAAAGTCTGAGTGATCACTCAGTGATTAACAAGCATTTTTTG
TTTCAAATGATGCACTGGTTGCAAATCTGTACTTCAGAAGACGAAGTGATAATTAAGACAATATTCTCACACCAATGGAA
GCCATACATGTTAAGTTATCATTTGGGATCATCCCCAAACATCTTGGCCTAATCTTCTCTGTTGCTGAATGATGATTGTT
ATATTGACAGTTTGGCGCAACTTCTATTAAAAGAAAGGTGAGTTATTGCATGCCATGCAATCTGTATTCTTTT-GCTGGT
TAGATACTAGTAAGTTTTGCTCTGCTCCTCTCGGTAATTTGTTCTTAGACTG----TATTTGAGAGAGGTTCCAATGCAA
TTCTTATA-TTTATTAGTCCAAAGGAATTTGTCTGGTCTTCTAAATTTTCTTTCACCAACATGTGATACATGA-------
-------------------------------------------------ACTTCTGGCCTGAAGCTGATGATCATGGTGC
AACAGCGTTCTGCCATTCATTTGGTAGCAAATCTGGGTGTCTGCTGAAGCTTTACTGTTTGGTGCTTACTGCTTAGTGAA
ACCAGGTTCGTTCTATTTCCACCAATCTGCAGCTTTCATATGTTCAATCCCGTTGCCTAGTTGGTAGTTGAATTTGTAAT
GAACTCAAAACATTGACCTGCTTTGATTGTAGAATATTTCACCATGCTTGTTCATAGTTGCTCAGTAAATCTTG------
-AAACATTTTGTGGAATAGCCACTCTATTTAG-ATGCATTTATTTATACCATAGTATAAGTTATTCACACATCTCTGTGC
CCACAGTTATTAGA---TACCTCCGTATCAAAATATAAGACGTTTTTGTAGTTCAAATTGAAGTGCAAAAACGTATTATT
TTTTGGTATGGAGGGAGA-AAATACATACTTTTATCCGAAAAAATATATTTAGAAGGTTAAAGTGCATATTTAGCAGGAA
TGTGGCACCTGAAGTAAATGTTTTCTT
>chr3D_70
AAAAAA----------------------------------------------------------------------CAAA
GCCATTTGATGTTAATGAGGTTTTAGAATCTTCAATTACCTTGAGCTTGTTTGGCAATATTGCTTGTCTATATCAAGGGA
CCATAAAGTGAATCCTGG---AAAAAGAGCAAATTTATGGTGCATACA-TTTTTGTGACATTTCTACTATCTTTTTCTCA
AAATAGATGGGTGCGGCAATGCACGTAATCAGTGATCTAGTACATTTGTAAAATATACTACTTTGTAAAAGAAAATCAGA
TGGATTCCTAGTACACATATTCTATCCATGCGGGTCGAAGATCTACAAAATCATACACACATATGTAGAATTGTCATCTC
ACCAAAACCTGAGACCCCGTTTGAAATGGATGTGTTGTTTTGTGCACACTGATACTTAATTCAAGTTTGAGCTAAATATT
GGTGGCCACACAAACTTTACACCGATTCCAAACAGCCTCTTATATA--------ATGAAAAAGAAAA------ACAGAGC
GGAAGGCGAGCGAAGTCTTCGTTTCCCGCTCG-AGGCCACCGCTATCCCGCGGCCGGAAGGCCACCGCTGCT-GTCGGTT
GCCGACCCTGCTCGCCGGAGTGCAGCTCCACGTGAG--------CACGTCCAGCGATAGGCTCCACTCTTGCTCCACCGC
TCCCGCCGTCGTGATGCGGCGGGACCTCCTCGCTCGCCCGTGTTTTCTAATCTTAATCTGCTACTGCTGTCGTTCGTAGA
CCAGACGTGCGCGGTGCGCAA-CCCCCAGTGCAGTCCATCTCGTCGGTA-ATCCTTTCTTTC-------CGGTAAATCAA
TCTACCCGCGGTTAACGCGACGATGGCGCGGT---------------------------------------GAGGAGTGC
G-CGCGGAAGGCTGGCACCCGCAATGCTCTGCGCCCGCGGCCTGTTCGACGGAATTCCCAGCCGGGGCGCCTCGCGGTGT
TGGTTCGGCTGCCAGGGCCGAGGATGCCCTTGCGGGCGTACGTGGGCATGCTGGCACGCGGAGCCAG-CCTGACGCGTAC
ACGTCCCCGCCGTTGCTCAAGGCGGTGGCAGCGAAGCGGGGCGCCGTGGCGCCGTCCGTCGGAGAGTCTGTCCACGCGCA
TGTGGTTAAGTTTGGGCTGGAGCTCAACGCCCACGTGGCGAGCTCGCTGGTGCTCATGTACGCTGCCAGGGGCGACGGCA
TGACGGCGCGTGCGCTGCTGGACGTGCAGCCCGCCAGAGGTGGCGGCACGCCTGTTGTGTGGAATGCGCTTATGTCTGGC
CACAAGAGAAGCAGGCAGTTCAGGCTGTCATGCTGCTCATTCCTGGATATTGTGAGGGCTGGCGTTGTGCCCACGCCGGT
CT-CTACATCACGGTGCTGTCAGCATGCGGCAAAGGCAACGACGTCCTGCTCGGAATGCAGCTGCACAAGCGCGTCATTG
AGAGTGGGGTGCTGCCTGTCCTCAAGGTGGAGAATGCGCTCGTTGATATGTATGCCGAGTGTGGCGAGATGGAAGCAGCT
TGGGATTTGTTTGAGGTCATGCAGGTGAGGAACATTGTGTCCTGGACGTCGGTAATCTGTGGGTGTGTAAGACTAGGTCA
GGTTGATCGAGCCAGAGTACTGTTTGATCGTATGCCTGAGAGGGACACCGTCTCATGGACTGCAATGATTGATGGTTATG
TACAAGCTGGCCAGTTCCGAGAGGCATTGGAGATGTTTCGTGAGATGCAACTTAGCAAGGTGAGGGCAGATGAGTTCACC
ATGGTCAGCATAGTCACGGCATGCACGCAGCTTGGTGCTTTAGAGACAGGGGAGTGGGCTAGAATTTACATGAACAGACA
TGGGATCAAGATGGATACTTTTGTCGGGAATGCACTCATAGACATGTATTCAAAGTGTGGGAGCATCGAGCGTGCATTGG
ACGTGTTCAATGAGATGCACAGTAGAGATAAATTTACCTGGACCGCTGTTATACTTGGTCTTGCAGTGAATGGCCATGGT
TTGGAGGCTATCGATATGTTTGACAGGATGCTTAGGGCGTTTGAAGCTCCAGACGAGGTGACCTTCATTGGCGTTCTCAC
TGCCTGTACTCATGCTGGCTTGGTTGACAAAGGACGAGACTTCTTTCTCAGCATGACTGTGACCTACAGGATTGCTCCTA
ATGTGATGCATTATGGATGCATAATCGACCTCCTTGGCCGAGCTGGGAAACTAAGAGAAGCATTGGAGACAATAGGTAAA
ATGCCCATGAAACCCAACTCTGCAATTTGGGGGACCCTGCTGGCAGCTTGTAGGGTCCATGGTAACTCAGAGATAGGTGA
ATTGGCAGCAGAACGTCTCCTTGAGTTGGAACCTGAGAACAGCATGGCTTACGTCCTTTTGTCCAACCTGTATGCAAAAT
CTAATAGATGGGGAGATGTCCGGTGGCTTAGGCAATTAATGATGGAGAAAGGAATCAAGAAAGAGCCTGGTTGCAGTCTT
ATTGAAATGAACGGCACAATTCATGAATTTGTAGCTGGCGATAGATCTCATCCTATGAGCGAAGAAATCTATTCTAAATT
GGACATGTTACTCATGGATTTGAAGAATGATGGGTATGTACCTGATGTAACCGAGGTCTTTGTTCAAGTCACAGAAGAAG
AAAAACAAAAAGTTCTTTATTGGCACAGCGAGAAGTTGGCTGTCGCTTTTGCATTACTCGTATCAGAATCCAGCGTGACA
ATAAGGATCGTGAAAAACTTGAGGATGTGTTTGGACTGCCACAATGCAATTAAATTGATCACCAAGCTGTATATGAGAGA
GATTGTTGTGAGGGACAGGACACGCTTCCATCATTTTAGACATGGACTCTGCTCTTGTAAGGACTATTGGTAACTCATCA
TGCATCGATGATGTAAAACAAGGTAATATCAGTTGTCCTAAAGTCTGAGTGATCACTCAATGATTAACAAGCATTTTTCA
TTTCAAATGATGCACTGGCTGCAAATCTGTACTTCAGAGGACGAAGTGATAATTAAGGCAGTATTCTCACACCAATGGAA
GCCATACATGTTAAGTTCTCATTTGGGATCATCCCCAAACATCTTGGTCTAATCTTCTCTGTTGCTGAATGATGATTGTT
ATATTGACAGTTTGGCACAATTTCTGTTAAAACAAAGGTGAGTTATTGCATGTCATGCAATCTGTACTCTTTTTCCTTGT
TAGATACTAGTAAGTTTTACTCTGCTCCTCTCAGTAAGAGATTGTTCTTAGACTGTTATTTGAGAGAGGTTCCAATTCAA
TTCTTATATTTTATTAGTCCAAAGGAATTTGTCTGGTCTTCTTAATTTTTTTTCATCAACATGTGATACATGATTCACTG
GCTCTGCAG-AAAGTTTCAGTGGGGAAATTCTTTCAGTAACATTATTTAACTTCTGGCCTGAAGCTGATGATCATGGTGC
AACAGCGTTCTGCCATTCACTTGGTAGCAAATCTGGGTGTCTGCTGAAGCTTTACTGTTTGG-------TGCTTAGTGAA
ACCAGGTTCGTTCTATTTCCACCAATCTGCAGCTTTCATATGTTCAATCCCGTTGCCTAGTTGGTAGTTGAATTTGTAAT
GAACTCAAAACGTTGACCTGCTTTGATTGTAGAATATTTCACCATGCTTGTTCATAGTTGCTCAGTAAATCTTG------
-AAACATTTTGTGGAACAGCCACTCTATTTAG-ACGCATTTATTTATACCATTGTATAAGTTATTCACACATCTTTGTGC
CCACAGTTGTTAGA---TACCTCCTTATCAAAATATAGGACATTTTTGCACTTCAACTTGAAGTGCAAAAACGTCTTATA
TTTTGGTACGGAGAGAGTAAA-TACATACTTTTATCC-GAAAAATATATTTAGAAGGTTAAAGTGCATATTTAGCAGGAA
TGTGGCACCTGAAGTAATTGCTTTC--
>chr3A_409
TTTGAG--------------------------------------------------------------------------
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------------------------AATGGATGTGTTGTTTTGTGCACACTGATATTTAATTCAAGCTTGAGCTAAATATC
TGTGGCCACACAAATTTTACACCGATTCCAAACAGCCTCTTATATA--------AAGAAAAAGAAAAAGAAAAACAGAGC
GGAAGGCGAGCGAAGTCTTCATTCCCCGCTCG-A------------------------AGGCCACCGCCGCT-GTCGGTT
GCCGACCCTGCTCGCCGGAGCGCAGCTCCACGTGAG--------CACGTCCAGCGATAGGCTCCACTCTTCCTCCACCGC
TCCCGCCGTCGTGACGCGCCGGGACCTCCTCGCTCGCCCGTGTCTTCTAGTCC------GCTGCCGCTGTCGTTCGTAGA
CCAGACGTGCGCGGTGCGCCACCCCCCAGTGCAGTCCATCTCGTCGGCTCATCCTTTCTTTCCCTGCAGTGGTAAATCAA
TCTACCCGCGGTTAACGCGACGATGCCGCGGT---------------------------------------GAGGAGCGC
C-CGGGGAAGGCTGGCACCCGCATTGCTCTGCGCCCACGGCCTGTTCGACGGAATTCCCAGCCGGGGCGCCTCGCGGTGC
TGGTTCGGCTGCCAGGGCCGAGGATGCCCTTGCGGGCGTACGTGGGCATGCTGGCACGCGGAGCCAGGCCTGGCGCGTAC
ACGTTTCCGCCGTTGCTCAAGGCGGTGGTGGCAGAGCGGGGCGCCGTGGCGTCGGCCGCCGGAGACTCTGTCCACGCGCA
TGTGGTTAAGTTTGGGCTGCAGCTCAACGCCCACGTGGCGAGCTCGCTGGTCCTCATGTACGCGGCCAGGGGCGACGGCG
TGACGGCGCGCGCACTGCTGGATGTGCAGCCCGCCAGAGGTGGCGGCACGCCCGTCATGTGGAATGCGCTTATGTCCGGT
CAC-----------------------------------------------------------------------------
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>chr3B_583
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---------------------------------------CCGCTGTCCCGCGGCCGGAAGGCCCACCGCTGCCGTCGGTT
GCAGGCCCTGCTCGCCGGAGCGCAGCTCCACGCGAGTACGCGACCACGTCCAGCGACTGACTCCACTCCTGCTCCACCGC
TCCCGCCGTCGCGATGCGGCGGGACCTCCTCGCTCGCCCGTGTC------------------------GTCGTTCGTAGA
CCAGGCGTGCGCA--GCGCCA-CCCCCAGTGCAGTCAATCTCGTCGGCTGATCGTTTCTTTCCCTGCGGCGGCAAATCAA
TCTACCCGCGGTTAACGCGACGATGACGCGGT---------------------------------------GAGGAGTGC
AACGCGGAAGGCTGGCACCCGCATTGCTCTGCGCCCGCGGCCTGTTCGACGGAATTCCCAGCCGGGGCGCCTCACGGTGG
TGGTTCGGCTGCCAGGGCCGAGGATGCCCTTGCGGGCGTACGTAGGCATGCTGGCACGCGGAGCCAGGCCTGACGCGTAC
ACTTTCCCGCCGTTGCTCAAGGTGGTGGCGGCGGAGCGGGGCGCCGTGGCGTCGGCTGCCGGAGATGCTGTCCTCGCGCA
TGTGGTTAAGTTTGGGCTGGAGCTCAACGCCCACGTGGCAAGCTCGCTGGTGCTCATGTATGCAGCCAGGGGCGACGGCG
TGACTGCGCGTGCGCTACTGGATGTGCAGCTCGCCAGAGGTGGCGGCACGCCCGTTGTGTGGAATGCGCTCATGTCCGGT
CACAAGAGAAGCAGGCAGTTCAGGCTGTCATGCTGCTCTTTCCAGGATATGGTGAGGGCTGGCATTGTGCCCACGCCGGT
CACCTACATCACGGTGCTGTCAGCATGTGGCAAAGGCAACGACGTCCTGCTCGGAATGCAGCTGCACAAGCGCATCATTG
AGAGCGGGGTGTTGCCTGACCTCAAGGTGGAGAATGCGCTCGTTGATATGTATGCCGAGTGTGGCGAGATGGAAGCTGCT
TGGGATTTGTTTGAGGGCATGCAGGTGAGGAATATTGTGTCCTGGACGTCGGTAATCTCTGGGTTTGTAAGACTAGGTCA
AGTTGATCGAGCCAAAGTACTGTTTGATCGTATGCCTGAGAGGGACACCGTCTCATGGACTGCAATGATTGATGGTTATG
TACAAGCTGGCCAGTTCCGAGAGGCATTGGAGATGTTTCGTGAGATGCAACTTAGCAAGGTGAGGGCAGATGAGTTCACC
ATGGTCAGCATAGTCACGGCATGCGCGCAGCTTGGTGCTTTAGAGACAGGGGAGTGGGCTAGAATCTACATGAACAGACA
TGGGATCAACATGGATACTTTTGTCGGGAATGCGCTCATAGACATGTATTCAAAATGTGGGAGCATCGAGCGTGCATTGG
ACGTGTTCAATGAGATGCACAGTAGAGATAAATTTACTTGGACCGCCGTTATACTTGGTCTTGCAGTGAATGGCCATGGT
GAGGAGGCTATCGATATGTTTGACAGGATGCTTAGGGCGTTTGAAGCTCCAGACGAGGTGACCTTCATTGGCGTTCTCAC
TGCCTGTACTCATGCTGGCTTGGTTGAAAAAGGACGAGACTTCTTTCTCAGCATGACTGTGACCTACAGGATTGCTCCTA
ATGTGATGCATTATGGATGCATGATCGACCTCCTTGGGCGAGCTGGGAAACTAAGAGAAGCATTGGAGACAATAGGTAAA
ATGCCCATGAAACCCAGCTCTGCAATCTGGGGGACCCTGCTGGCAGCTTGTAGGGTTCATGGTAACTCAGAGATAGGTGA
ATTGGCAGCAGAACATCTCCTTGAGTTGGATCCAGAGAACAGCATGGCTTACGTCCTTTTGTCCAATCTGTATGCAAAAT
CTAATAGATGGGGGGATGTCCGGTGGCTTAGGCAGGTAATGATGGAGAAAGGAATCAAGAAAGAGCCTGGTTGCAGTCTT
ATTGAAATGAACGGCACAATTCACGAATTTGTAGCTGGCGATAGATCTCATCCTATGAGCGAAGAAATCTATTCTAAATT
GGACAAGGTACTCACGGATTTGAAGAATGATGGGTATGTACCTGATGTAACCGAGGTCTTTGTTCAAGTCACAGAAGAAG
AAAAACAAAAAGTTCTTTATTGGCACAGCGAAAAGTTGGCTGTCGCTTTTGCATTACTCGTATCAGAATCCAGCATGACA
ATAAGGATCGTGAAAAACTTGAGGATGTGTTTGGACTGCCACAATGCAATTAAATTGATCACCAAGTTGCATATGAGAGA
GATTGTTGTGAGGGACAGGACACGCTTCCATCATTTTAGACATGGACTCTGCTCTTGTAAGGACTATTGGTAACTCAGCA
TGCATCGATGATGTAAAACAAGGTAATATCAGTTGTCCTAAAGTCTGAGTGATCACTCAATGATTAACAAGCATTTTTCA
TTTCAAATGATGCACTGGCTGCAAATCTGTACTTCAGAGGACGAAGTGGTAATTAAAACAATGTTCTCACACCAATGGAA
GCCATACATGTTAAGTTCTCATTTGGGATCATCCCCAAACATCTTGGTCTAATTTTCTCTGTTGCCGAATGATGATTGTT
ATATTGACAGTTTGGCGCAACTTCTATTCAAAGAAATGTGAGTTATTGCATGCCATGCAATCTGTATTCTTTTTGCTGGT
TAGATACTAGTAAGTTTTGCTCTGCTCCTCTGAGTGATTTGTTGTTCTTAGACTGTTATTTGAGAGAGGTTCCAATTTAA
TTCTTATATTTTATTAGTCCAAAGGAATTTGTCTTGTCTTCTTAATTTTCTTTCACCAACATGTGATACATGATTCACTG
GCTCTGCAG-A-AGTTTCAGTGGGGAAATTCTTTCAGTAACATTATTTTACTTCTGGCCTGAAGCTGATGATCATGTTGC
AACAGCGTTCTGCCATTCACTTGGTAGCAAATCTGGGTGTCTGCTGAAGCTTTACTGTTTGG-------TGCTTAGTGAA
ACCAGGTTCGTTCTATTTCCACCAATCTGCAGCTTTCATATGTTCAATCCCGTTGCCTAGTTGGTAGTTGAATTTGTAAT
GAACTCAAAACATTGACCTGCTTTGATTGTAGAATATTTCACCATGCTTGTTCATAGTTGCTCAGTAAATCTTG------
-AAACGTTTTGTGGAACAGCCACTCTATTTAG-ACGCATTTATTTATATCATGGCACAAGTTATTCACACATCCTTGTGC
CCACAGTTGTTAGA---TACCTCCGTATCAAAATATAAGACGTTTTTGCAGTTCAAATTGAAGCGCAAAAACGTCTTATA
TTTTGGTATGAACGGAGT-AAATACATACTTTTATCCGAAAAAATATATTTAGAAGGTTAAAGTGCATATTTAGCAGGAA
TGTGGCACCTGAAGTAATTGCTTTC--
>chr3D_856
GCGGC---------------------------------------------------------------------------
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--------------------------------AAATCAATCTACCCGCGGTTAACGAGACGATGCCGCGGTAAGGAGTGC
G-CGCGGAAGGCTGGCACCCGCATTGCTCTGCGCCCGCGGCCTGTTCGACGGAATTCCCAGCCGGGGCGCCACACGGTGG
TGGTTCGGCTGCCAGGGCCGAGGATGCCCTTGCGGGCGTACGTGGGCATGCTGGCACGCGGAGCCAGGCCTGACGCGTAC
ACGTTCCCGCCGTTGCTCAAGGCGGCGG---CGGAGCTGGGCGCTGTGCCGCCGTCCGTCGGTGACGCTGTCCACGCGCA
TGTGGTTAAGTTTGGGCTGGAGCTCAACGCCCACGTGGCGAGCTCGCTGGTGCTCATGTACGCGGCCAGGGGCGACGGCG
TGACGGCGCGTGCGCTGCTGGATGTGCAGCCCGCCAGTGGTGGCGGCACGCCCGTTGTGTGGAATGCGCTTATGTCCGGT
CACAAGAGAAGCAGGCAATTCAGGCTGTCATGCTGCTCTTTCCTGGATATGATGAGGGCTGGCGTTGTGGCCACGCCAGT
CACCTACATCACGGTGCTGTCAGCATGTGGCAAAGGCAACGACGTCCTGCTCGGAATGCAGTTGCACAAGCGCATCATTG
AGAGTGGGGTGCTGCCCGATCTCAAGGTGGAGAATGCGCTCGTTGATATGTACGCCGAGTGTGGCCAGATGGAAGCAGCT
TGGGATTTGTTTGAGGGCATGCAGGTGAGGAATATTGTGTCCTGGACGTCGCTAATCTCTGGGTTTGTAAGACTAGGCCA
GGTTGATCGAGCCAGAGTACTGTTTGATCGTATGCCTGAGAGGGACACCGTCTCATGGACTGCAATGATTGATGGTTATG
TACAAGCTGGCCAGTTCCGAGAGGCATTGGAGATGTTTCGTGAGATGCAACTTAGCAAGGTGAGGGCAGACGAGTTCACC
ATGGTCAGCATAGTCACGGCATGCGCGCAGCTTGGTGCTTTAGAGACAGGGGAGTGGGCTAGAATTTACATGAACAGACA
TGGCATCAAGATGGATACTTTTGTCGGGAATGCGCTCATAGACATGTATTCAAAGTGTGGGAGCATCGAGCGTGCATTGG
ACGTGTTCAATGAGGTGCACAGTAGAGATAAATTTACTTGGACCGCTGTTATACTTGGTCTTGCAGTGAATGGACATGGT
GAGGAGGCTATCGATATGTTTGACAGGATGCTTAGGGCGTTTGAAGCTCCAGACGAGGTGACCTTCATTGGCGTTCTCAC
TGCCTGTACTCATGCTGGCTTGGTTGACAAAGGACGAGACTTCTTTCTCAGCATGACTGGGACCTACAGGATTGCTCCTA
ATGTGATGCATTATGGATGCATGATCGACCTCCTTGGCCGAGCTGGGAAACTAAGAGAAGCATTGGAGACAATAGGTAAA
ATGCCCATGAAACCCAGCTCTGCAATCTGGGGGACCCTGCTGGCAGCTTGTAGGGTCCATGGTAACTCAGAGATAGGTGA
ATTGGCAGCAGAACGTCTCCTTGAGTTGGATCCAGAGAACAGCATGGCTTACGTCCTTTTGTCCAATCTGTATGCAAAAT
CTAATAGATGGGGAGATGTCCGGTGGCTTAGGCAGGTAATGATGGAGAAAGGAATCAAGAAAGAGCCTGGTTGCAGTCTT
ATTGAAATGAACGGCACAATTCACGAATTTGTAGCTGGTGATAGATCTCATCCTATGAGCGAAGAAATCTATTCTAAATT
GGACAAGGTACTCACGGATTTGAAGAACGATGGCTATGTACCTGATGTAACCGAGGTCTTTGTTCAAGTCACAGAAGAAG
AAAAACAAAAAGTTCTTTATTGGCACAGCGAAAAGTTGGCTGTCGCTTTTGCATTACTCGTATCAGAATCCAGCGTGACA
ATAAGGATCGTGAAAAACTTGAGGATGTGTTTGGACTGCCACAATGCAATTAAATTGATCACCAAGCTGTATGTGAGAGA
GATTGTTGTGAGGGACAGGACACGCTTCCATCATTTTAGACATGGACTCTGCTCTTGTAAGGACTATTGGTAACTCATCA
TGCATCGATGATGTAAAACAAGGTAATATCAGTTGTCCTAAAGTCTGAGTGATCACTCAATGATTAACAAACATTTTTCA
TTTCAAATGATGCACTGGCTGCAAATCTGTACTTCAGAGGACGAAGTGATAATTAAGACAATATTCTCACACCAATGGAA
GCCATATATGTTAAGTTCTCATTTGGGATCATCCCCAAACATCTTGATCTAATCTTCTCTGTTGCCGAATGATGATTGTT
ATATTGACAGTTTGGCAGAAGTTCGATGAAAAGAAAGGTGAGTTATAGCATGTCATGCAATCTGTATTCTTTTTGTTGGT
TAGATACTAGTAAGTT--ACTCTGCTCCTCTGAGTAATTTGTTGTTCTTAGACTGTTATTTGAGAGAGGTTCCAATTCAA
TTCTTATATTTTATTAGTCCAAAGGAATTTGTCTGGTCTTCTTAATTTTCTTTCACCAACATGTGATACATGATTCACTG
GCTCTGCAGAA-AGTTTCAGTGGGGAAATTCTTTCAGTAACATTATTTAACTTCTGGCCTGAAGTTGATGATCATGGTGC
AACAGCGTTCTGCCATTCACTTGGTAGCAAATCTGGGTGTCTGCTGAAGCTTTACTGTTTGG-------TGCTTAGTGAA
ACCAGGTTCGTTCTATTTCCACCAATCTGCAGCTTTCATATGTTCAATCCCGTTGCCTAGTTGGTAATTGAATTTGCAAT
GAACTCAAAACATTGACCTACTTTGATTGTAGACTATTTCACCATGCTTGTTCATAGTTGCTCAGTAAATCTTGAAAGTT
GAAACATTTTATGAAACAGCCACTCTATTTAAAACACATTTATTTACACCATGGTATAAGTTATTCACACACCTTTGTGC
CCACTGTTGTTAGATACTACCTCCGTATCAAAATATAAGACTTTTCTGCAGTTCAAATTGAAGTGCAAAAACGTCTTATA
CTTTGGTACGGAGGGAGT-AA-TACATACTTTTATCTGGAAAAATATATTTAGAAGGTTAAAGTGCATATTTAGCTGGAA
CGGGGCACCTGAAGTAATTGCTTTC--
>chr3A_1298
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CACAAGAGAAGCAGGCAGTTCAGGCTGTCATGCTGCTCTTTCCTGGATATGGTGAGGGCTGGCATTGTGGCCACGCCGGT
CACCTACATCACGGTGCTGTCAGCATGCGGCCAAGGCAACGACGTCCTGCTCGGAATGCAGCTGCACAAGCGCGTCATTG
AGAGTGGGGTGTTGCCTGACCTCAAGGTGGAGAATGCGCTCGTTGATATGTATGCCGAGTGTGGAGAGATGGAAGCAGCT
TGGGATTTGTTTGACAGCATGCAGGTGAGGAACATTGTGTCGTGGACATCGGTGATCTATGGGTGTGTAAGACTAGGCCA
GGTTGATCGAGCCAGAGTACTGTTTGATCGTATGCCTGAGAGGGACACCGTCTCATGGACTGCAATGATTGATGGTTATG
TACAAGCTGGCCAGTTCCGAGAGGCATTGGAGATGTTTCGTGAGATGCAACTTAGCAAGGTGAGGGCAGACGAGTTCACC
ATGGTCAGCATAGTCACGGCATGCGCGCAGCTTGGTGCTTTAGAGACAGGGGAGTGGGCTAGACTTTACATGAACAGACA
TGGGATCAAGATGGATACTTTTGTCGGGAATGCGCTCATAGACATGTATTCAAAGTGTGGGAGCATCGGGAGGGCAATGG
ACGTGTTCAATGAGATGCACAGTAGAGATAAATTTACTTGGACCGCTGTTATACTTGGTCTTGCAGTGAATGGCCATGGT
GAGGAGGCTATCGATATGTTTGACAGGATGCTTAGGGTGTTTGAAGTTCCAGACGAGGTGACCTTCATTGGCGTTCTCAC
TGCATGTACTCATTCTGGTTTGATTGACAAAGGACGAGACTTCTTTCTCAGCATGACTGGGACCTACAGGATTGCTCCTA
ATGTGATGCACTATGGATGCATAATCGACCTCCTTGGGCGAGCTGGAAAACTAAGAGAAGCATTGGAGACAATAGGTAAA
ATGCCCATGAAACCCAACTCTGCAATTTGGGGGACCCTGCTGGCAGCTTGTAGGGTCCATGGTAACTCAGAGATGGGTGA
ATTGGCAGCAGAACGTCTCCTTGAGTTGGATCCTGAGAACAGCATGGCTTACGTCCTTTTGTCCAATCTGTATGCAAAAT
CGAATAGATGGGGAGATGTTCGGTGGCTTAGGCAATTAATGATGGAGAAAGGAATCAAGAAAGAGCCTGGTTGCAGTCTT
GTTGAAATGAACGGCACAATTCACGAATTTGTAGCTGGCGATAGATCTCATCCTATGAGTGAAGAAATCTATTCTAAATT
GGACAAGGTACTCACGGATTTGAAGAATGATGGGTATGTACCTGATGTAACCGAGGTCTTTGTTCAAGTCACAGAAGAAG
AAAAACAAAAAGTTCTTTATTGGCACAGCGAAAAGTTGGCTGTCGCTTTTGCATTACTCGTATCAAAATCCAGCGTGACA
ATAAGGATCGTGAAAAACTTGAGGATGTGTTTGGATTGCCACAATGCAATTAAGTTGATCACCAAGTTATATATGAGAGA
GATTGTTGTGAGAGACAGGACACGCTTCCAACATTTTAGACATGGACTGTGCTCTTGTAAGGACTATTGGTAACCCATCA
TGCATCGATGATGTAAAACAAGGCAATATCAGTTGTCCTAAAG---------TCACTCAATGATTAACAAGCATTTTTCA
TTTCAAATGATGCACTGGCTGCAAATCTGTACTTCTGAGGACGAAGTGATAATTATGACAGTATTCTCACACCAATGGAG
GCCATACATGTGAAGTTCTCATTTGGGATCATCCCCAAACATCTTGGTCTAATCTTCTCTGTTGCTGAATGATGATTGTT
ATATTGACAGTTTGGCACAACTTCTATTAAAAGAAAGGTGAGTTATTGCATGTCATGCAATCTGTATTCTTTTTGTAGGT
T---------------TTGCTCTGCTCCTCTGAGTAATTTGTTGTTCTTAGACTGTTATTTGAGAGGGGTTCCAATTCAA
TTCTTATATTTTATTAGTCCAAAGGAATTTGTCTGGTCTTCTCAATTTTCTTTCACCAACATGTTATACATGATTCACTG
GCTCTGCAGAA-AGTTTCAGTGGGGAAATTCTTTGAGTAACATTATTTAACTTCTGGCCTGAAGCTGATGATCATTGTGC
AACAGCGTTCTGCCATTCACTTGGTAGCAAATCTGGGTGTTTGCTGAAGCTTTACTGTTTGG-------TGCTTAGTGAA
ACCAGGTTCGTTCTATTTCCACCAATCTGCAGCTTTCATATGTTCAATCCCGTTGCCTAGTTGGTAGTTGAATTTGTAAT
GAACTCAAAACATTGACCTGCTTTGATTGTAGAATATTTCACCATTCTTGTTCATAGTTGCTCAGTAAATCTTG------
-AAACATTTTGTGGAACAGCCTCTCTATTTAG-ACGCTC-------------AGTATAAGTTATTCACACATCTTTGTGC
CCACAGCTGTTAGA---TACCTCCGTATCAAAGTATAGGACGTTTTTGCAGTTCACATTGAAGTGCAAAAACGTCTTATA
TTTTGGTACGGAGGGAGTAAA-TACATACTTTTATCC-GAAAAAAATATTTAGAAGGTTAAAGTGCATATTTAGCAGGAA
TGTGGCACCTGAAGTAATTGCTTTC--
>SNPs
S-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----
------------------SS-----S-----S-S------------------------------------------S---
-------------SS-S-SSS-----S-S-----------S----S--S-----S-S-S----S--------------S-
---------------S---------S------------------------------------------------------
-----------------------------------S-S------------------------------------------
-------------------------------------------------------------S------------------
----------------------------------------------SSSSSSSS--------------------------
--------------------------------S------------------------------------------S----
--------------------------------------------------------------------------------
----S---------------------------------------------------------------------------
----------S---------------------------------------------S----------S------------
-------------------------------------------------S------S-----S-S----------S----
--------------------------------------------------------------------------------
-----S----------------------------------------------------------------------S---
-----------------------------------------S--------------------------------------
--------------------------------------------------------------------------------
---S---------------------------S---S--------------------------------------------
------------------------S-------------------------------------------------------
------------S--------S----------------------------------------------------------
----------------------------------------S----S----------------------------------
--------------------------------------S-----------------------------------------
---------------S-----S-----------------------------------------S----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------S-------------------------------------------------------
-------------------------------S---------------S--------------------------------
------------S-------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------S-----S-------------------------------
--------------------------------------------------------------------------------
-----------S--------------------------------------------------------------------
---------------------------------S----------------------------------------------
-------------------------------------------------------------------------S------
--------------------------------S-----------------------------------------------
---------------------------------------------------S----------------------------
----------------------S------------------------------------S------------------SS
------------------S-------------------S-----------------------------------------
-----------------S-----------------------------S--------------------------------
--------------------------------------------------------------------------------
--------------------------------S----------S--SSSSSS------------------------S---
------------------------------------------S-------------------------------------
--------------------------------------------------------------------------------
-------------------S------------------------------------------SSSSSSS-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------S-----------------S---------------------------------------S-----
--------S---------------------------------------S-------------------------S----S
-----------------S--------------------------------------------------------------
-----------------S--S----SS
>forward_811
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------------------------------GTTCGTAGA
CCAGACGTGCT---------------------------------------------------------------------
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>reverse_1945
--------------------------------------------------------------------------------
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------------------------TGGGAATGCGCTCATAGACA------------------------------------
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---------------------------
>forward_1385
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----GAGAAGCAGGCAGTTCAGGT-------------------------------------------------------
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---------------------------
>reverse_2443
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------------------------------------------TATGGCCTACGTCCTTTTGTCC----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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---------------------------
>forward_1561
--------------------------------------------------------------------------------
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---------------------TCAAGGTGGAGAATGCGCTT---------------------------------------
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>reverse_3540
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-------------------TTTGGTAGCAAATCTGGGTGTC---------------------------------------
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---------------------------
