>input_sequence_41610
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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----------------------------------------ATGATGGTTTGTGCTACGCAGCCGAAGCTGGCCTGAGAAA
TTGATCAGTTTAGTGCTCACGCGTGTGTGTTTT-TGTCTGAATTAATCCAGGCGCTGAGCGAGAGGCAGCCCCAGTCGGA
GAAGAAGGCCCCCCGGGCGAGGCCCATGTCGGGAAAGGCCGTCTTCGTGCTCTGCGCCACCAGCTTCTTCGTGGGGCTGC
TGCTCAGCGGCCGGATGACGGTGCTGACGCCGCCGGCGTCGGGCAGCCACGGCGGCTCCAGGATCGCCCTCTTCTCCGAC
GACGACTGCGAGCACATGCGTGTAAGTGCCACTAC---CGTTCGATCACACCATTTTTTCGTTCGCTCGACGCAAGCACA
CCACCACGTACGTATACATTGTTGTCGATCCTGCATGCGGCTTGGTTCATCGTTCATTTTTTTTGG-TTTTCAGAAGCTG
GAAGAAGAGAGCAACCCGAACGATGTCATGAACGAGGTGACACGAACCCACCAAGCCATTCGGTAAGCACCTATC-----
-----TTATTCCCGACAGTCAAGTGCCAATCGTACTATACTGATGTTGTTTACGGATGTATGTATGTGGTGGTGCAGGTC
TCTTGACAAGTCGGTGTCGTCGCTGGAGATGGAGCTGGCGGTGGAGCGCGCCAAGAGGAACGGCGGCCTG---------G
GCGCGGCGGTGCCGTCCAAGGGCCTCCCGAAGGTGTTCGTGGTGGTGGGCATCAACACGGCCTTCAGCAGCAAGAAGCGG
CGCGACTCGCTCCGCGACACCTGGGTGCCCCGG-----------------------------------------------
--------------------------------------------------------------------------------
------GGCGACAAGCTCCGGCAGCTGGAGAAGGAGAAGGGGGTGGTGGTGCGGTTCGTGATCGGGCACAGCGCCACGCC
---------CGGCGGCGCGCTGGACCGGGCCATCGACGTGGAGGAGGCGGAGACGAGGGACTTCATGCGGCTGGACCACG
TGGAGGGCTACCACGAGCTCTCCTCCAAGACCAGGATCTACTTCGCCGCCGCCGTCGCCACCTGGGACGCCGCCTTCTAC
GTCAAGGTCGACGACGACGTGCACGTCAACCTAGGTACGTGCGTATATGTACCACACGCAGCAGTAGACTGGACTTGCTA
CGAGTTTG------TACGTCCCGTGGCTCCGTC----GAGCTTAGTTGTGTGGTGGTTGTGCGTGCAGGGATGCTGACGA
ACAGGCTCGCCAGGTACCGGACGACGCCGAGGGTGTACGTGGGGTGCATGAAGTCCGGCCCGGTGCTGTCGCAGAAGTAA
TCTA-----GTGCACCGAGCTGAATAGATTG----------ATCGTTTTGCCATGCCATTCGC----TGAT---CTCTCG
CCATGGGTGTGGGTGTTGGTGGCTGCAGGGGCGTCAAGTACCACGAGCCGGAGTCGTGGAAGTTCGGGGACGAGGGGAAC
AAGTACTTCCGCCACGCCACGGGGCAGATCTACGCCATCTCCAGGGACCTCGCCTCCTACATCTCTATCAACCAGTAAGT
ACAATCTCCAGTACATCCTAGGGTAAATGATCTTGTAAATTGACGTTGTTGGCTGATGATTTTCGTCGTACGATGATGGA
TGTGCAGGCCGATACTGCACCGGTTCGCGAACGAGGACGTGTCGCTGGGCGCGTGGCTCATCGGGCTCGAGGTGGAGCAC
GTCGACGACCGGAGTCTCTGCTGCGCCACGCCGCCAGGTACGTAGTACAGCACCTCCGTAGTCTAAAACCAATCTCTTCT
GCAGTGTTATAATCTGTGAAGCTGATCTGCTCTGCTTCTCCTTCTCCGTGCATGCAGACTGCGAGTGGAAGAAGCAGGCC
GGGAACGTGTGCGCGGCGTCCTTCGACTGGTCCTGCAGCGGCATCTGCAAGTCCGTCGACAGGATGAGGGCCATCCACAG
CGCCTGCGGCGAGGGCGACGGAGCCGTCTCCAACTTCGCCGCCGCCTGA-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------
>chr1A_1_TraesCS1A01G267200
TGACTATACTGCTTTTCTGTATTCACCCTTGCCACCGCCATCCAGCGCGTCGCTTCGGGCGACACAGATTGCTGATCCAC
CACCACATCATCTAGGTCTTCCTCAGAAAGACCCAACTCCTTCATCGTCGCTGCCAGATCGTTCGGATCACCCGATCCAG
AAGCTTCTGTCACCATCTTCTTGTTTCCCTTGCCCGAAGATGAGTTCTACCGGGCTGTGACCAAACCCTAACCAACCAGA
CGCCGCTAGTTCGTCGCCTAGAACGGGGGAGCGAAACCAGATCGTCACACCCATCGTTAGACGGAGAGGACTCAGCGATC
AGAGGTAGAGAAAGAGATCTCCACGCGCGGCGATGAACGCCACCGAGAGGACGTGAAACCCTAACGAGAGGGAAGAATTA
CACTAACGAAAAGAAGTGAAGTATTCATCTATGTGTGAGGGCCCTAAGTTTTAGTTTCACCCCAGGGCCCCCAACATGCA
TGGACTGGCCCTGCACGAAATGTCCGGACCACATTATCTGAACGTTTACGGACGGTTTGATGGATGACGTTGGAGATGTC
CTGGGAGGCTTAATCAAAACATAGGTGAATCACTCACCAAGCATACATCAATAACAAACAGAGCACCGTTAACCAGCAGA
TCATTCACCGCCAAAAAAAAAACGCGTAATGGTCTTTTCTTCGGGGCATCAGCGCTCGCTTTGCTTCCCGCTCGGCAGCA
TGTTTTTGCTCGCTCCCTCGCCCGCTGGCTCACACTGGCAGCATGAGGCCCCTCACACAAAGGGCCTTGCCTGCCAACTG
AACCGTTTCGCCCGTGCAGGGCACAGCGCTGGGACTCATGCATGGGTGGGATAGATAGCCGGCGTTTTCGGCGTCGGCTC
CAGCGCCTCTTCAGTCTTCAGCCCTGGAGACAGAGGCAGCTCTTCTTCCTTTCAGTAGTTGTCTGTCTTTGAGCAGAGCC
ACCTCCAATCCAGCCAGAGCGCCTGCCTGCCTGCAGAGCGATGATGGTTTGTGCTACGCAGCCGAAGCTGGCCTGAGAAA
TTGATCAGTTTAGTGCTCACGCGTGTGTGTTTT-TGTCTGAATTAATCCAGGCGCTGAGCGAGAGGCAGCCCCAGTCGGA
GAAGAAGGCCCCCCGGGCGAGGCCCATGTCGGGAAAGGCCGTCTTCGTGCTCTGCGCCACCAGCTTCTTCGTGGGGCTGC
TGCTCAGCGGCCGGATGACGGTGCTGACGCCGCCGGCGTCGGGCAGCCACGGCGGCTCCAGGATCGCCCTCTTCTCCGAC
GACGACTGCGAGCACATGCGTGTAAGTGCCACTAC---CGTTCGATCACACCATTTTTTCGTTCGCTCGACGCAAGCACA
CCACCACGTACGTATACATTGTTGTCGATCCTGCATGCGGCTTGGTTCATCGTTCATTTTTTTTGG-TTTTCAGAAGCTG
GAAGAAGAGAGCAACCCGAACGATGTCATGAACGAGGTGACACGAACCCACCAAGCCATTCGGTAAGCACCTATC-----
-----TTATTCCCGACAGTCAAGTGCCAATCGTACTATACTGATGTTGTTTACGGATGTATGTATGTGGTGGTGCAGGTC
TCTTGACAAGTCGGTGTCGTCGCTGGAGATGGAGCTGGCGGTGGAGCGCGCCAAGAGGAACGGCGGCCTG---------G
GCGCGGCGGTGCCGTCCAAGGGCCTCCCGAAGGTGTTCGTGGTGGTGGGCATCAACACGGCCTTCAGCAGCAAGAAGCGG
CGCGACTCGCTCCGCGACACCTGGGTGCCCCGG-----------------------------------------------
--------------------------------------------------------------------------------
------GGCGACAAGCTCCGGCAGCTGGAGAAGGAGAAGGGGGTGGTGGTGCGGTTCGTGATCGGGCACAGCGCCACGCC
---------CGGCGGCGCGCTGGACCGGGCCATCGACGTGGAGGAGGCGGAGACGAGGGACTTCATGCGGCTGGACCACG
TGGAGGGCTACCACGAGCTCTCCTCCAAGACCAGGATCTACTTCGCCGCCGCCGTCGCCACCTGGGACGCCGCCTTCTAC
GTCAAGGTCGACGACGACGTGCACGTCAACCTAGGTACGTGCGTATATGTACCACACGCAGCAGTAGACTGGACTTGCTA
CGAGTTTG------TACGTCCCGTGGCTCCGTC----GAGCTTAGTTGTGTGGTGGTTGTGCGTGCAGGGATGCTGACGA
ACAGGCTCGCCAGGTACCGGACGACGCCGAGGGTGTACGTGGGGTGCATGAAGTCCGGCCCGGTGCTGTCGCAGAAGTAA
TCTA-----GTGCACCGAGCTGAATAGATTG----------ATCGTTTTGCCATGCCATTCGC----TGAT---CTCTCG
CCATGGGTGTGGGTGTTGGTGGCTGCAGGGGCGTCAAGTACCACGAGCCGGAGTCGTGGAAGTTCGGGGACGAGGGGAAC
AAGTACTTCCGCCACGCCACGGGGCAGATCTACGCCATCTCCAGGGACCTCGCCTCCTACATCTCTATCAACCAGTAAGT
ACAATCTCCAGTACATCCTAGGGTAAATGATCTTGTAAATTGACGTTGTTGGCTGATGATTTTCGTCGTACGATGATGGA
TGTGCAGGCCGATACTGCACCGGTTCGCGAACGAGGACGTGTCGCTGGGCGCGTGGCTCATCGGGCTCGAGGTGGAGCAC
GTCGACGACCGGAGTCTCTGCTGCGCCACGCCGCCAGGTACGTAGTACAGCACCTCCGTAGTCTAAAACCAATCTCTTCT
GCAGTGTTATAATCTGTGAAGCTGATCTGCTCTGCTTCTCCTTCTCCGTGCATGCAGACTGCGAGTGGAAGAAGCAGGCC
GGGAACGTGTGCGCGGCGTCCTTCGACTGGTCCTGCAGCGGCATCTGCAAGTCCGTCGACAGGATGAGGGCCATCCACAG
CGCCTGCGGCGAGGGCGACGGAGCCGTCTCCAACTTCGCCGCCGCCTGATCGGCCGCGCCGCCCCTAG--TGTCGACCAA
GCTATGTTACATGCTTTGTGTTTTTGTCAGACTTGAAAACTATCATCAGAGAAAGGAACCGGCTGTAGTTTCCGGCCGGC
GGCAGGTAAACCGTAGAAACGTGGCGGCGTTTTGAGAACAGAGCATCTCGTGGTTTGGTGATCCAACCGAAGGTCATGTC
TTCTTTTATTAGTTTGCAAAAAAAAGTCTTCTTTTATCAGGACAGGAGTATCTAGCGAACGTCAGAGTATAACAAGTTTA
GTTGACGAGCATGACAAATACTCCTAAGTTCATTTTTACCAGAATATTGCCGTGCTTGCAACTAAATTTATCATCCTTGC
ATCAATATAAATTGTCATGAAAAGCATTCGATTTGTTATGCCTAAAAATCTGACGTCGGATTTTTAGCAATTTTATTTTA
TTAAGCTTTGGAGGTTGCAAAGCTTAGCTTTTACCTAAGTTAATCATTTGTTCATGTAAAAACAAAGGTTAATCATTTGT
ATGTCCATTGTTAGG-TTCCAAGCCAGTGCCTAACAACT--TAGTTCTGTAAATCACGGGCAAACTGTTAATTATCTTTT
CTTTTTGCGGGGGAAATCGATGTTAATTATCACTGCTACCATGCTTTTCTTGTGACTGCACTCGCCTTCTGATGAGTCAT
CACACTTAGTTATGATCCTTCGAAATTTGATGGATCATTTGGTCCATTGTCATCAATCAACCTTTTCTTGTTTTATTTAA
CAACTTTGCTCTAACTAACTTTTTCTTATGGTAACATATTTATGTCTAAAAATGTGAAAGTCTAATAAATTAGGCGTGTT
TCTCAATCAACTTCTGAAACATGTTGATATAGAAACAGTTCCACACAAAAATAATACTCCCTCTGTAAACGAATATAAGA
GCTTCTAAACGCTTTTATATTTGTTTACAGAGAGAGTAACTGTTTCATCTTCATCTGTCCGGCCCATAAAATGTGAGTCC
CCAGGTTCTAGTTA
>chr1D_606
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------CATCAATAACAAACAGTGCACCGTTAACCAGCGGA
TCATTCACAGGAACCAAAAAAGGCGAG--TGGTCTTTTCTTCGAGGCATCAGCGATAGCTTTGCTTCCGCCTCGGCAGCA
TGTTATTGCTCGCTCCCTCGCTCGCTGGCTCACACTGGCAGCATGAGGTCCCTCACACAAAGGGCCTTGCCTGCCAACTG
AACCGTTTCGCCCGTGCAGGGCGCAGCGCTGGGACTCATGCATGGGTGGGATAGATAGCCGGCGTTTTCGGCGTCGGCTC
CAGCGCCTCTTCAGTCTTCAGCCGCGGAGACAGAGTCAGCTCTTCTTCCTTTCAGTA---GTCTGTCTTTGAGCAGAGCC
ACCTCCA-TCCAGCCAGAGCGCCTGCCTGC----AGAGCGATGATGGTTTGTGCTATGCACCCGAAGCTGGCCTGAGAAA
TTAACCGGTGCACTGCTTATGCGTGTGTGTTTTGTCTG------AATCCAGGCGCTGAGCGAGAGGCAGCCGCAGTCGGA
GAAGAAGGCCCCGCGGGCGAGGCCCATGTCGGGGAAGGCCGTGTTCGTGCTCTGCGCCACCAGCTTCTTCGTGGGGCTGC
TGCTCAGCGGCCGGATGACGGTACTGACGCCGCCGGCGTCGGGCGGCCACGGCGGCTCCAGGATCGCCCTATTCTCCGAC
GACGACTGCGAGCACAGGCGTGTAAGTGTCACTACTACCGTTCGAGCACGTACA--------------------------
---------------------TTGTTGATCGTGCATGCGGCTTGGTTCATCGTTCATTTTGCCTTCTTATTCAGAAGCTG
GAAGAAGAGAGCAACCCGAACGATGTCATGAACGAGGTGTCACGAACCCACCAAGCCATTCGGTAATCACGTAATA----
---TGTTAGTCCCGACAGTCAAGTGCCAATAGTACTATACTGATATTTGTTACGCACGTATGTATGCGGTGGTGCAGGTC
TCTGGACAAGTCGGTGTCGTCGCTGGAGATGGAGCTGGCGGTGGAGCGGGCCAAGAGGAACGGCGGCCTG---------G
GCGCGGCGGTGCCGTCCAAGGGCCTCCCGAAGGTGTTCGTGGTGGTGGGCATCAACACGGCCTTCAGCAGCAAGAAGCGG
CGCGACTCGCTCCGCGACACCTGGGTGCCCCGG-----------------------------------------------
--------------------------------------------------------------------------------
------GGCGACAAGCTCCGGCAGCTGGAGAAGGAGAAGGGGGTGGTGGTGCGGTTCGTGATCGGGCACAGCGCCACGCC
---------CGGCGGCGCGCTGGACCGGGCCATCGACGTGGAGGAGGCGGAGACCAGGGACTTCATGCGGCTGGACCACG
TGGAGGGCTACCACGAGCTCTCCTCCAAGACCAGGATCTACTTCGCCGCCGCCGTCGCCACCTGGGACGCCGCCTTCTAC
GTCAAGGTCGACGACGACGTACACGTCAACCTAGGTACGCAC------TTATCTATTTGCACGTATGTTTGGGTACGGAG
GGTCT--------GTACGTACCGTGGCTCCATGGATC--------TTGTGTGGTGGTTGTGCGTGCAGGGATGCTGACGA
ACAGGCTCGCCAGGTACAGGACGACGCCCAGGGTGTACGTGGGGTGCATGAAGTCCGGCCCTGTGCTGTCGCAGAAGTAA
TCTA-----GTGCACCGAACTGAATACATTGATGGTTAATCATCGTTTTGCCATGTCATTTCGCTGATCTGTCGCTATGG
CCATGGGTGCG------GGTGGCTGCAGGGGCGTCAAGTACCACGAGCCTGAGTCTTGGAAGTTCGGGGACGAGGGGAAC
AAGTACTTCCGCCACGCCACGGGGCAGATCTACGCCATCTCCAGGGACCTCGCCTCCTACATCTCCATCAACCAGTAAGT
ACAATCCACAGTACATCCTAGGGTAAATGATCTTGTAAATTAACGTCGTTGGCTGATGATTCTCGTCGTATGATGATGGA
TGCGCAGGCCGATACTGCACCGGTTCGCGAACGAGGACGTGTCGCTGGGCGCGTGGCTCATCGGGCTCGAGGTGGAGCAC
GTCGACGACCGGAGCCTCTGCTGCGCCACGCCCCCAGGTACGTAGTACAGCGCCTCCGTAGTCTAAAACCAATCTCTTCT
GCAGTGTTATAATCTGTGAAGCTGACCTGCTCTGTTTCTCCTTCTCCGTGCATGCAGACTGCGAGTGGAAGAAGCAGGCC
GGGAACGTGTGCGCGGCGTCCTTCGACTGGTCCTGCAGCGGCATCTGCAAGTCCGTCGACAGGATGAGGGCCATCCACAG
CGCCTGCGGCGAGGGCGACGGAGCCGTCTCCAACTTCGCCGCCGCCTGATCCGCCGCCCCCTCCCCGTGATGTCGACCAA
GCCTTGTTACATGCTTTGT-TTTTTGTCAGACTTGAAAACTATCATCAGAGAAAGGAACCAACTGTGGTTTCCGGCCGG-
--CAGGTAAACCGTAGAAACGTAGCGGCGTTTTGGGAACAGAGCATCTGGTGGTTTGGTGATCCAACCGAAGGCCATGTC
T-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------TTTTA
TTAAGCTTTGGAGGTTGCAAAGCTTAGCTTTTACT--------------------------ACAAAAGTTAATCATTTGT
ATGTCCATTGTTAGGATTCCAAGCCGGTGCTTAACAGCTTATAGTTCTATAAATCATGGTCAAACTGCCGTGGACG----
--------------AATCGATGTTAATTATCATTGCCACCATGCTTTTGTTGTGACTGCACTCGCCTTCTGATCAGTCAT
CAC-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------
>chr1B_739
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------CGCTCGCTGGCTCACACTGGCAGCATGAGGTCCCTCACACAAAGGGCCTTGCCTGCCAACTG
AACCGTTTCGCCCGTGCAGGGCGCAGCGCTGGGACTCATGCATGGGTGGGATAGATAGCCGGCGTTTTCGGCGTCGGCTC
CAGCGCCTCTTCAGTCTTCAGCCCTGGAGACAGAGGCAGCTCTTCTTCGTTTCAGTA-------GTCTTTGAGCAGAGCC
ACCTCCA-TCCAGCAAGAACGCCTG----C----AGAGCGATGATGGTTTGTGCAATGCAGTCGAAGCTGGCCTGAGAGA
TTAACCAGTGCACTGCTCATGCGTGTGTGTTTT-TCTG------AATCCAGGCGCTGAGCGAGAGGCAGCCGCAGTCGGA
GAAGAAGGCCCCGCGGGCGAGGCCCATGTCGGCGAAGGCGGTCTTCGTGCTGTGCGCCACCAGCTTCTTCGTGGGGCTGC
TGCTCAGCGGCCGGATGACGGTACTGTCTCCCCCGGCGTCGGGCAGCCACGGCGGCTCGAGGATCGCCCTCTTCTCCGAC
GACGACTGCGAGCACAGGCGTGTAAGTGTCACTAG---CGTTCAATCACACCATTTCTCCGTTCGCTCGACGCAAGCACA
CC-CCACGTACGTA--CATTGTTGTCGATCCTGCATGCGGCTTGGTTGATCGTTCATTCCGTCTTCTTTTTCAGAAGCTG
GAAGAAGAGAGCAACCCGAACGATGTCATGAACGAGGTGTCACGAACCCACCAAGCCATTCGGTAAGCACGTACAAATAT
TTTTGTTAGTCCCGACAATCAGGTGCCAATAGTA---TACTGATATTTGCTACGCATGTATGCGA----TGGTGCAGGTC
TCTGGACAAGTCTGTGTCGTCGCTGGAGATGGAGCTGGCGGTGGAGCGCGCCAAGAGGAACGGCGGCCTG---------G
GCGCGGCCGTGCCGTCCAAGGGCCTCCCGAAGGTGTTCGTGGTGGTGGGCATCAACACGGCCTTCAGCAGCAAGAAGCGG
CGCGACTCGCTCCGCGACACCTGGGTGCCCCGG-----------------------------------------------
--------------------------------------------------------------------------------
------GGCGACAAGCTCCGGCAGCTGGAGAAGGAGAAGGGGGTGGTGGTGCGGTTCGTGATCGGGCACAGCGCCACGCC
---------CGGCGGCGCACTGGACCGGGCCATCGACGTGGAGGAGGCGGAGACCAGGGACTTCATGCGGCTGGACCACG
TGGAGGGCTACCACGAGCTGTCCTCCAAGACCAGGATCTACTTCGCCGCCGCCGTCGCCACCTGGGACGCCGCCTTCTAC
GTCAAGGTCGACGACGACGTGCACGTCAACCTAGGTACGTAC------GTACCACACGCAGCAGTGGACTGGACTTGCTA
TGAGTTTGTATACGTACGTACCGTTGCTCCATCGATCGAGCTTAATTGTGTGGTGGTTGTGCGTGCAGGGATGCTGACGA
ACAGGCTCGCCAGGTACAGGACGACGCCCAGGGTGTACGTGGGGTGCATGAAGTCCGGCCCGGTGCTGTCGCAGAAGTAA
TCTAATCTAGTGCACCGAACTGAATAGATTGATTATTGACCGTCGTTTTGCCATGTCATTTTAACTGTGAT---CTCTCG
CCATGGGTGTG------TGTGGCTGCAGGGGCGTCAAGTACCACGAGCCGGAGTCTTGGAAGTTCGGGGACGAGGGGAAC
AAGTACTTCCGCCACGCCACGGGGCAGATCTATGCCATCTCCAGGGACCTCGCCTCCTACATCTCCATCAACCAGTAAGT
ACAATCTGCG-----TCCTAGGGTAAATGATCTTGTAAATTAACGTCGTTGCCTGATGATTTTCGTCGTATTATGATGGA
TGCGCAGGCCGATACTGCACCGGTTCGCGAACGAGGACGTGTCGCTGGGCGCGTGGCTCATCGGGCTCGAGGTGGAGCAC
GTCGACGACCGGAGCCTCTGCTGCGCCACGCCCCCTGGTACGC---ACAGTGCCTCCGTAGTTTTTCAATTAATCTAAAC
GGTGGTGAGGAGGATGGCCACTAATCCCCTTTTCCTCCGGTGTACGTACG--TGCAGACTGCGAGTGGAAGAAGCAGGCC
GGGAACGTGTGCGCGGCGTCCTTCGACTGGTCCTGCAGCGGCATCTGCAAGTCCGTAGACAGGATGAGGGCCATCCACAG
CGCCTGCGGCGAGGGCGAGGGAGCCGTCTCCAACTTCGCCGCCGCCTGATCGGCCGCGCCACCCCTAG--TGTCGACCAA
GCTATGTTACATGCTTTGT-TTTTTGTCAGACCTGAAAACTATCATCAGAGAAAGGAACCAACTGTAGTTTCCGGCCGG-
--CAGGTAAACCGTAGAAACGTAGCGGCGTTTTGAGAACAGAGCATCTGGTGGTTTGGTGATCGAACCGAAGGTCATATC
CTTTCATATCTGAT------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------GGTTGCAAGGCTTAGCTTTTACC-----------------------------AAAGTTAATCATTTGT
ATGTCCATTGTTAGGATTCCAAGCCAGTGCTTAACAACT--TAGTTTTATAAATCATGGGCAAACTGCCGTGGACG----
--------------AATCGATGTTAATTATCATTGCCACCATGCTTTTGTTGTGACTGCACTTGCCTTCTCATCAGTCAT
CAC-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------
>chr3B_1580
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------CAGGTC
GCTGGACAAGGCGGTGTCTTCCCTGGAGATGGAGCTGGCCGTGGAGCGCGCCCGGAGCGGCGA------CGCCGGCGCCG
GCGCGGCGGGCTCGTCCAAGGCCCTTCAGAAGGCCTTCGTGGTGATCGGCATCAACACGGCCTTCAGCAGCAAGAAGCGC
CGCGACTCCCTCCGCGAGACCTGGGTGCCCTCAGGTAACAT-------GCATGTCATGCACTTGGGACTTGGCCTTGGCA
CTTGGCACTGGCGCAATGCAGCAACGAAT--TATATCATGTCTAATTTGTTGTTCATGGTCGCGCGGGTG----------
----TAGGGGAGAAGCTGAGGCGGCTGGAGAAGGAGAAGGGGATCGTGGTCCGGTTCGTGATCGGGCGGAGCGGGGCGGC
GGAGGGCGGCGGCGGGGCGGCGGACCGCGCCCTGGACGCGGAGGAGGCGGAGAACAAGGACTTCCTGCGGCTGGACCACG
TGGAGGGCTACCACGAGCTGTCCTCCAAGACGAGGATCTACTTCGCCACCGCCGTCGCCACCTGGGACGCCGACTTCTAC
GTCAAGGTCGACGACGACGTCCACCTCAACCTCGGTACGT----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------
>chr3D_1580
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------CAGGTC
GCTGGACAAGGCGGTGTCTTCTCTCGAGATGGAGCTAGCCGTGGAGCGAGCTCGGAGCGGCGACGCCGGCGCCG------
GCGCGGCGGGCTCGTCCAAGGACCTTCAGAAGGCCTTCGTCGTGATCGGCATCAACACGGCCTTCAGCAGCAAGAAGCGC
CGCGACTCCCTCCGCGAGACCTGGGTGCCCTCAGGTAACATACATCATGCATGTCATGCACGC---ACTTGGCG------
-TCGGCACCGGTGCAATGCAGCAACGAGTCATATACCATGTTTAATTGATTTGT-----------TGGTGGTCGCGCGCG
GGCGCAGGGGAGAAGCTGAGGAGGCTGGAGAAGGAGAAGGGGATCGTGGTCCGGTTCGTCATCGGCCGGAGCGGGACGGC
GGAG---GGCGGCGGGGCGGCGGACCGCGCCCTGGACGCGGAGGAGGCGGAGAACAAGGACTTCCTGCGGCTGGACCACG
TGGAGGGCTACCACGAGCTGTCCTCCAAGACCAGGATCTACTTCGCCACCGCCGTCGCCACCTGGGACGCCGACTTCTAC
GTCAAGGTCGACGACGACGTCCACCTCAACCTCGGTACGT----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------
>chr3A_1580
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------CAGGTC
GCTGGACAAGACGGTGTCTTCTCTGGAGATGGAGCTGGCCGTGGAGCGCGCCCGGAGCGGCGT------CGCCG------
GCGCGGCGGGCTCGTCCAAGGCCCTTCAGAAGGCCTTCGTCGTGATCGGCATCAACACGGCCTTCAGCAGCAAGAAGCGC
CGCGACTCCCTCCGCGAGACCTTGGTGCCCTCAGGTAGCATACAT------------GCACGC---ACTTGGCG------
-TTGGCACCGGTGCAATGCAGCAACGAAT--TACACCATGTTTAAATTGTTCAT-----------GGGTG----------
----CAGGGGAGAAGCTGAGGAGGCTGGAGAAGGAGAAGGGGATCGTGGTGCGGTTCGTGATCGGCCGGAGCGGGGCGGC
GGAGGGCGGCGGCGGGGCGGCGGACCGCGCCCTGGACGCGGAGGAGGCGGAGCACAAGGACTTCCTCCGGCTGGACCACG
TGGAGGGCTACCACGAGCTGTCCTCCAAGACCAGGATCTACTTCGCCACCGCCGTCGCCACCTGGGACGCCGACTTCTAC
GTCAAGGTCGACGACGACGTCCACCTCAACCTCGGTACGT----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------S---------------S--
--------S-SS-SS------SSSSSSSS--------------S----------S-S-----------SS----------
----S----------------S--------------------------S-------------------------------
----------------------S---------------------------------------------------------
---------------------------------------------------------SSS--------------------
-------S----------------------SSSS----------------------S-----------------------
--S-S----SS-S------S---------------S-SSSSSSS---------------------------S--------
------------S--------------------S----------------------------------------------
----------------------S---------------------------------------------------------
----------------S-----------S---------------------------S-S---------------------
--S-----------SS--------------------------------------------S-S-SS--------------
---------------------------------------S------------------------------S--SS-----
--------S---------------------S-------------S--SS-----S-----------S-------------
---S----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------S-------------------------
--------------------------------------------------------------------------------
----------------------------------------S-SSSSSS-----------------S--------------
S------------------S----------S-------------S-----------------------------------
-----------------S----------S---------------------------------------------------
------------------S------------------------------------S----SSS-----------------
-----------SSSSSS--------------------------------------S------------------------
-----------------------------------------------------------------S--------------
-------S---------------------------------S----S-----------------------S---------
--S-----------------------------------------------------------------------------
--------------S-----------------S------------------S----------------------------
-------------------------S------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------S-------------------
-------------------S----------------------------------------SS-----------------S
SS--------------------S-------------------------S-------------------------------
--S-SS---SS-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----
-----------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSS-----S-------------
------------------------------S-----------------S-------S----------SSSSSS-SSSSSS
SSSSSSSSSSSSSS------------------S---S-----------S------------------------S------
---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSS
>forward_326
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------AGGACTCAGCGATC
AGAGGT--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------
>reverse_2208
--------------------------------------------------------------------------------
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-----------------------------------------------TGTACCACACGCAGCAGTAG-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------
>forward_654
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------AGCAGA
TCATTCACCGCCAA------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------
>reverse_2463
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------CTGATCTCTCGCCATGGG
TG------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------
>forward_2204
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------GTCAACCTAGGTACGTGCGT------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------
>reverse_3684
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---TTTGCGGGGGAAATCGATGT---------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------
