>input_sequence_41557
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-----------------------------------------------CTGCGCTGCAGCTGCGGCCTTCAGGTAAACGAC
ATGTGAACCTCCATTCCTGATGCATATTACCCCATTGACGCCTCGCCAATTCGTTTCAGGTCTGGGGTGTGATCTCTCTC
CC----------AAGAGATGGGGGGCACGGCGTCGAGGCTCGCCGCCCCGATAAAGCACCGGCGGGTGGAGAGGGAGCTG
GACAACAAGGTGGCGGAGGCGCTGCGGGAGCGGGCCAAGGCGAGGACGAAGACGTTCCGGTCGGTGAACAGCATCACCAT
GCGCCTCCCTCGCTTCAAGGACGGCCTCAAGGACATCCGGGACGTCTTCGACCACTACG----GTAAGAGCAGAAGCCAC
CATGCTAAGTTTAGCACCCA---TGGAACTTCAGAGTTTGCATGCATTA--AAAGTATGAGGCTTGCAACTTCCAGACAC
GGACTCCAACGGGACTATCGACAACGAGGAGCTGCGGACCTGCCTGAGCAAGCTCGAGGTGCGGATGTCGGAGAAGGAGG
CCGACGACGTGCACCGCTACTGTGACGTCGACAGCCGCAAGGGGATCCAGTTCCAGGAGTTCGTCGTCCTCATCTGCCTC
ATGTACCTGCTCTTCGGCCCCAACGTCACGCGCCGGGTAAGGGGTAACTAGATGATGCTTCTTCTGTCCT---------A
GGCGAATTCTTCTTCATGAT---AGTTCACTGATGAAGCTTGTTCTATCCGGGTGCTTGTTTGTCGTCAGGTTTCCGAGT
TCGAGTCGGACAAGCTCAACTACATCTTCGACGAGCTCATCGACGCCTTCCTCTTCTTCAACAGGGACGGCGACGGCAAG
GTGACCAGGAAAGACGTCACCCAGAGGATGAACGAGGAGTCTGACCGGGAGAGGACGCCCACCCACATCACCACGCAGCT
ATTCAGTCAGTGCTCTTGC----TGCGCTGCCCCCTTTATTTCT----CAATGCAC-ATAAACAAGATAA----GTCATG
TGAAATTCAAAACAGAACCAGACTGTAATATGTTGTTGGTGCGTGTACCTTGTTGCAGAGGAGATGGACCTGAACAAGAA
CGGCAAGGTGAACCTCAAGGAGTTCCTCTTCTCCATGATCAGATGGGCAGGGCTCGAGCCCGAGGAAGGAGATGAAAGCA
ACGACACTTCTCCGTAGTAGTGTAGTTAGGCTTCTTCCCCTCATCAGTTTGTCAAAAAT-ATAAGCAATCACCATTTGCA
AGTTAATCCTACGTGTCTTATGACAAAGTGTCCGTTTGTTATGGCTTCATTGGTAAAACCTCAAATGTTCAGGGCAGATG
GGACTTCATGTATAC------ACAGCAGACAGCATAGTGGCTAAGAGACTGCATCTCAAAAGTTTGTATAG----TAATA
ATAATCATTAATTTTCTGGAACACTACAAATTTGCATCATCAGTTCAAAAGAAACCAATCTCATGTAGCGTACAAAAACG
ACCTGCCTACATTTCCTCAGAATGCGGAACAAAACTGAGAGCCATCGTGCCACGTAACTGAGACGGGGAAGAAACCACCT
TGAAAAGGCGGACAGATCACATCAAAACTCCAGAAGAGTTATCAAGCGCCTTCTTGGCGATCTTGAATTTGCCAGCCAAC
TCCTTCCCTTCGTCCTTGGCGATCACATGCTGCCTGACAAACATCACGATTCCATCTCTCAACATCTCCAGCTCCGGGTT
CCCCGCGATACGGGTAAAGACGTTCCACATAAGCGAGTCTTCTTTCTGCATCAAGGTCTCAAACATCATCCGGAAATGCA
TGATCTTTTTGGGGGTCATCTCCACTGGGTTCGCCAGGTTGACAACCTTCAGTGTTGCCAGCGACAAGGAGAAGCTTGCG
AGCATCTCAGCAACTAGTTTCGCAAGGTTCATGGACCGATTCAACTCCATCTCATCTAGCTCCTTAAAACGGTCCC----
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>chr1B_1_TraesCS1B01G109100
AAAGAACGGATCAAGGCAGAATTCTTTCGATCAAATACTTCTAGGGACAAACGAAAGAATGAAGGTATAATTTTGGGGTA
TAGGCTACACTGTATGTTCGTTTCCCTCTCTAATATCAGCTCTGCATAAGTATTTTGTACTGCCAGACAGACTGAACCAT
CTACCCGTGAACGTATATATCTGACACTATTTTGCTCGTTTCCTACCATGTGCGATTCTAGAAATCGATAGAATTCCCAG
GGTTACTTTCTGGTTAACAATCTTCGAAATGCTGTTTCAAAGAAGACCTGTGCAATGTGCAGCCTTCAGCACCGTACCAC
ATCTCCATTTTCTATTTGTGCTATAGCT-GGTTGCCGTATAGTGTTTACGGCTTCCATATAAATACTGGATTATGTATTT
TTGCCGTATTCCTGCTCTAATTAATACAAAAGT--TATATCCTGTTGTAATATTGGGTTGAGTGGGTTTATGTCGGTTGC
TTGTTTTTCACCA-AACAGGTTGTACGCGTTATCTTATACTGCCATTTATGCCTTCCTCGTGACTCAAAGACCAGAATGT
GCTCATTATTCTTTTTCCTTGGACAATCCGATATATGCTCATGTTGGTATGCGGACGTTTCTTG----------------
--------------------------AGATTCTTGAATAACAGAATCCCTTGTGAGGTTTTGAG----------------
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-----------------------------------------CTAAAATAACGTTGATCAATGTT----------------
-----------------------TAAGAAAAAGGGCAAAATTGGGCCACAAAAAAGATAAAACTATACTACCGACAAGGA
GATGAAAGGACCAAATCTCTTTCATGCAGAAGTCGGTAGACGGGTAGCGGGAGCATATGCATATCCCAGGCACGGCACGC
ATGGCAG-------GCTGCTGCAGCGTCCACTTCTATTTTTGGGGCATCAGATTCTACCTCATCCGGCGCCCCCTCCCAG
GTCGATGGAGATTGCTCTAACCAGACGGATTCCCCCACTCG------AATCCAACAACCCACATCAACA-------AAAA
CCCTCGATTCCACCTCGCAAGGGCAGCACAGGAATCATCTGT-----CTGCGCTGCAGCTGCGGCCTTCAGGTAAACGAC
ATGTGAACCTCCATTCCTGATGCATATTACCCCATTGACGCCTCGCCAATTCGTTTCAGGTCTGGGGTGTGATCTCTCTC
CC----------AAGAGATGGGGGGCACGGCGTCGAGGCTCGCCGCCCCGATAAAGCACCGGCGGGTGGAGAGGGAGCTG
GACAACAAGGTGGCGGAGGCGCTGCGGGAGCGGGCCAAGGCGAGGACGAAGACGTTCCGGTCGGTGAACAGCATCACCAT
GCGCCTCCCTCGCTTCAAGGACGGCCTCAAGGACATCCGGGACGTCTTCGACCACTACG----GTAAGAGCAGAAGCCAC
CATGCTAAGTTTAGCACCCA---TGGAACTTCAGAGTTTGCATGCATTA--AAAGTATGAGGCTTGCAACTTCCAGACAC
GGACTCCAACGGGACTATCGACAACGAGGAGCTGCGGACCTGCCTGAGCAAGCTCGAGGTGCGGATGTCGGAGAAGGAGG
CCGACGACGTGCACCGCTACTGTGACGTCGACAGCCGCAAGGGGATCCAGTTCCAGGAGTTCGTCGTCCTCATCTGCCTC
ATGTACCTGCTCTTCGGCCCCAACGTCACGCGCCGGGTAAGGGGTAACTAGATGATGCTTCTTCTGTCCT---------A
GGCGAATTCTTCTTCATGAT---AGTTCACTGATGAAGCTTGTTCTATCCGGGTGCTTGTTTGTCGTCAGGTTTCCGAGT
TCGAGTCGGACAAGCTCAACTACATCTTCGACGAGCTCATCGACGCCTTCCTCTTCTTCAACAGGGACGGCGACGGCAAG
GTGACCAGGAAAGACGTCACCCAGAGGATGAACGAGGAGTCTGACCGGGAGAGGACGCCCACCCACATCACCACGCAGCT
ATTCAGTCAGTGCTCTTGC----TGCGCTGCCCCCTTTATTTCT----CAATGCAC-ATAAACAAGATAA----GTCATG
TGAAATTCAAAACAGAACCAGACTGTAATATGTTGTTGGTGCGTGTACCTTGTTGCAGAGGAGATGGACCTGAACAAGAA
CGGCAAGGTGAACCTCAAGGAGTTCCTCTTCTCCATGATCAGATGGGCAGGGCTCGAGCCCGAGGAAGGAGATGAAAGCA
ACGACACTTCTCCGTAGTAGTGTAGTTAGGCTTCTTCCCCTCATCAGTTTGTCAAAAAT-ATAAGCAATCACCATTTGCA
AGTTAATCCTACGTGTCTTATGACAAAGTGTCCGTTTGTTATGGCTTCATTGGTAAAACCTCAAATGTTCAGGGCAGATG
GGACTTCATGTATAC------ACAGCAGACAGCATAGTGGCTAAGAGACTGCATCTCAAAAGTTTGTATAG----TAATA
ATAATCATTAATTTTCTGGAACACTACAAATTTGCATCATCAGTTCAAAAGAAACCAATCTCATGTAGCGTACAAAAACG
ACCTGCCTACATTTCCTCAGAATGCGGAACAAAACTGAGAGCCATCGTGCCACGTAACTGAGACGGGGAAGAAACCACCT
TGAAAAGGCGGACAGATCACATCAAAACTCCAGAAGAGTTATCAAGCGCCTTCTTGGCGATCTTGAATTTGCCAGCCAAC
TCCTTCCCTTCGTCCTTGGCGATCACATGCTGCCTGACAAACATCACGATTCCATCTCTCAACATCTCCAGCTCCGGGTT
CCCCGCGATACGGGTAAAGACGTTCCACATAAGCGAGTCTTCTTTCTGCATCAAGGTCTCAAACATCATCCGGAAATGCA
TGATCTTTTTGGGGGTCATCTCCACTGGGTTCGCCAGGTTGACAACCTTCAGTGTTGCCAGCGACAAGGAGAAGCTTGCG
AGCATCTCAGCAACTAGTTTCGCAAGGTTCATGGACCGATTCAACTCCATCTCATCTAGCTCCTTAAAACGGTCCCAGAT
GCAGTACTGCAATGACACCAAAATAAAACAGGAATACACACATGTTAAATTCATCCAACTCTAGGACATCAATTTATCTC
CATGCACACATGTTTGTTTTATCTATTAAATTCC--------TATGTTAAGAAAAATATATGCTTGCCCGGCAAACGAAG
CAGTAAATCACCAACTGGTGAGGCAGAAAGCAGTACTGTATGTAG-----TATGGAAAATGATAAGAATACAATGTCATA
CCTGCAAACTGAACTTATGATTCTTATCATGGCTACATAGCTTGGAGGCGAGGACTGTGTAATATTTATTGAAAGTCTTT
TCTTGCAGACAACAGTCAACAATGACTCTCATAATTTCTCGATCCTGCACAGCAATAGAGAGAAAAAAGTTAAATAATAT
TGACACACGTACACACAGAAAACAGCATCTCGCAGGAAAAAA--CAATGCAGACCTGCTTCCCAGATAGGTCCAGCCTCA
GGATCTTGTCAAAAGCGTCTACATAGTCTTCGGCGCTCATTATGATGCAAAAGATTGCTCTTCGTATATCTGTGTTCATC
CGCTGGGCGGCTGCAAGCTGAACCAGTTTCTGTGCCTCTACAACCTCCTTGCTGATAACTGCTGCAACATCTTCAACATT
GCCTGCTGTGGACGATACATCCCCTGACAACCACCACTGCCCTTTTTTCTCAGGATCCAACAGCTTACTCCATTTTAGCC
CGCGCAAGAGGATATCTTCTGACTTTAGCTGCAGGCAAGCAAAAACAGAACAAACTACTAAATGAGCAGGAAAAGGTTTC
TGTTCAGGCATT------GGGAGATGAAGTTCTGGTACAAACCTTTTGAAGCCACTTTTTTACACGGGTATGCTGTGAAG
GATCCTCTTTGGCCCTTTTCTTGTTGTTCTTAATGTCACATATCGTCTCAAGCATAAACTCCATCTGCATGGCAAGTTAA
ACCAGATACAAAACTTAAAACTACTCCAACTTGAATTACTTTTTAAAACAGGTGCAT
>chr1A_2
-AAGAATGGATTGAGACAGAACTCTTTCAATCAAATACTTGTAGGGACAAACGAAAGAATGAAGGTATAATTGTGGGGTC
CATTTGCCAGTCTAAAAATC---------------------CTGTACAAGTATTTTGTACTGCAAAACAGACCAAAGTAT
GTATCCTAT----------------ACTATTTTGCTTGTTTCCAACCATGTGCGATTCTAGAAATCGATAGAATTCCCAG
GGAAACCTTCTGGTTCACAATCTTTGAGTTTCTGTATCAGAGAAGACTTGTGCAATGCGCGGCCTTCGGTACCATACAAC
ATCAGCATCTTCTATTTGTGCTATAGCTGGGTTGCCGTATAGTGTTTACGACTTCCATGTCAATACTGGATTATGCATGT
TTGCCTTATT-------------ATACAAAAGTTATATATCCTGTTGCAATATTGGGT-----GGGTTTATGTCCGTTGC
GTGTTTTTTCACTGAATAGATTGTACGCATAATCTTGGACTGCCACTTATGCCGTCCTGGTGACTTGGGGACCAGTATGC
GCTCGTGATCCTTTTTCCTTGGACAATCCGGTATGTGCTCATATCGGTATGTGCACTTTCTAGTGTCGACCAGTAATCGG
ATCGCTGCTCGTTTCGATGTTGACACAGAATCTTGAAGAACATAGTCCCTTGTGAGTCTACAACAACAACAACAACAAAG
CCTTTAGTCCCAAGCAAGTTGGGGTAGGCTAGAGGTGAAACCCATAAGATCTCGCAACCAACTCATAGCTCTGGCACATG
GATAGCAAGCTTTCACGCACCCCTGTCCATAGCTAGCTCTTTGTCGATACTCCAATCCTTCAGGTCTCTCTTAACGGACT
CCTCCCATGTCAAAATCGGTCGACTCCGCCCTCTCTTGACATTCTCCGCACGCTTTAGCCGTCCGCTATGCACTGGAGCT
TCTGGAGGCCTGCGCTGAATATGCCCAAACCATCTCAAACGATGTTGGACAAGCTTCTCCTCAATTGGTGCTACCCCAAC
TCTATCTCATATATCATCATTCCGGACTCGATCCTTCCTCGTGTGGCCACACATCCATCTCAACATACGCATCTCCGCCA
TACCTAACTGTTGAACATGTCGCCTTTTAGTCGGCCAACACTTCGCGCCATACAACATTGCGGGTCGAACCGCCGTCCTG
TAGAACTTGCCTTTTAGCTTTTGTGGCACTCTCTTGTCACAGAGAATGCCAGAAGCTTGGCGCCACTTCATCCATCCGGC
TTTGATTCAATGGTTCACATCTTCATCAATACCCCCATCCTCCTGCAACATTGACCCCAAATACCGAAAGGTGTCCTTCC
GAGGTACCACCTGGCCATCAAGGCTAACCTCCTCCTCCTCACAGCTAGTAGTACTGAAACCGCACATCATGTACTCGGTT
TTAGTTCTACTAAGCCTAAACCCTTTCGATTCCAAGGTTTGTCTCCATAACTCTAACTTCCTATTTACCCCCGTCCGACT
ATCGTCAACTAGCACCACATCATCCGCAAAGAGCATACACCATGGGATATCTCCTTGTATACCCCTTGTGACCTCATCCA
TCACCAATGCAAAAAGATAAGGGCTCAAAGCTGACCCCTGATGCAGTCCTATCTTAATCGGGAAGTCATCGGTGTCGACA
TCACTTGTTCGAACACTTGTCACAATATTATTGTACATGTCCTTGATGAGGGTAATGTACTTTGCTGGGACTTTGTGTTT
CTCCAAGGCCCACCACATGACATTCCGCGGTATCTTATCATAGGCCTTCTCCAAGTCAATGAACACCATATGCAAGTCCT
TCTTATGCTCCCTATATCTCTCCATAAGTTGTCGTACCAAGAAAATGGCTTCCATGGTCGACCTCCCAGGCATGAAACCA
AACTGATTTTTGGTCACGCTTGTCATTCTTCTTAAGCGGTGCTCAATGACTCTCTCCCATAGCTTCATTGTATGGCTCAT
CAGCTTAATTCCACGGTAATTAGTACAACTCTGAACATCTCCCTTGTTCTTGAAGATTGGTACTAATATACTCCGTCTCC
ATTCTTCTGGCATCTTGTTTGCCCGAAAAATGAGGTTGAAAAGCTTGGTTAGCCATACTATCGCTATGTCCCCGAGACCT
TTCCACACCTCAATGGGGATACAATCAGGGCCCATCGCCTTGCCTCCTTTCATCCTTTTTAAAGTCTTCTTCACCTCAGA
CTCCTGGATGCGCCGCACAAAACACATGCTGGTCTCATCAAAGGAGTCATTCAGTTCAATGGTAGAACTCTCATTCTCCC
CATTGAACAGCTTGTCGAAGTACTCCCGCCATCTATGCTTAATCTCTTCGTCCTTCACCAAGAGTTGGCCTGCTCCGTCC
TTGATGCATTTGACTTGATGGTCTCTTGTGAGTCTATCTCACAAAAATAGCATTGATTGATGGTCTCTCTTTTTTGGGGC
GTAAAAGCATTGATTGCTGATGATAACACAAGCAACAAAATTGGGTCAAGCAGAAAAGAGAGCGCA---ACGGACAAGGG
AATGAAAGGACCAAATCTCTTTCATGCAGT----------CGG-TAGTGGGAGCATTTGCATATTCA------GGCACGC
ATGGCAGACGTCCTGCTGCTGCCGCGTCCACTTCTATTTTTAGGGCATCAGATTCTACCTCATCCCAGGCCA--------
----ATGGAGATTGCCGTAACCAGACGGATTCCCCCACTCAGAATCCAATCCAACAAACGTACTACACCAAACAACAAAA
CCCTCAATTCCACCCCGCAAGGCAGCGCAGGCGTCAAGGCTGA-------------------------------------
------------------------------------------------------TTCAGGTCT-GGGTGTGATCTTTCTC
CCTCTTTCTCTGAAGAGATGGGGGGCGCGGCGTCGAGGCTCGCCGCCCCGATAAAGCACCGGCGGGTGGAGAGGGAGCTG
GACAACAAGGTGGCGGAGGCGCTGCGGGAGCGGGCCAAGGCGAGGAAGAAGACGTTCCGGTCGGTGAACAGCATCACCAT
GCGCCTCCCTCGCTTCAAGGACGGCCTCAAGGACATCCGGGACGTCTTCGACCTCTACGGTACGTAAGAGCAGAAGCCAC
CATGCTAAGTTTAGCACCCA---TGGAGCTTCGGAGTTTGCATGCATTA--GAAGTGTGAGCTGTCCAACTTTCAGACAC
GGACTCCAACGGGACGATCGACAACGAGGAGCTGCGGAGCTGCCTGAGCAAGCTCGAGGTGCGGATGTCGGAGAAGGAAG
CCGACGACGTGCACCGCTACTGCGACGTCGACAGCCGCAAGGGGATCCAGTTCCAGGAGTTCGTCGTCCTCATCTGCCTC
ATGTACCTGCTCTTCGGCCCAAACGTCACGCGCCGGGTAGGGTAACCAACCAACCACATCTTCCTCCTGGCTGTCTGACA
GGAGAATTCTTCCTGACTTCAATGGTTCACTGATGAAGCTTGTTCTATC-------TGGTTTGTTGTCAGGTTTCCGAGT
TCGAGTCGGACAAGCTCAACTACATCTTCGACGAGCTCATCGACGCCTTCCTCTTCTTCAACAGGGACGGCGACGGCAAG
GTGACCAGGAAAGACGTCACCCAGAGGATGAACGAGGAGTCTGACCGGGAGAGGACGCCCACCCACATCACCACACAGCT
CTTCAGTCAGTACTCTTG-------TGCTGCCCCCTTTATTTCTTTTCC-ATGCAT-ATAAACAAGAT-------TCATG
TGAAATTCAAA-CAGAAGCAGACTATAATA---TGTTGGTGCGTGTACCTTGTTGCAGAGGAGATGGACCTGAACAAGAA
CGGCAAGGTGAACCTCAAGGAGTTCCTCTTCTCCATGATCAGATGGGCAGGGCTCGAGCCCGAGGAAGGAGATGAAAGCA
ACGACACTTCTCTGTAGTGTAGT--TTAGGCTTCTTCCCCTCATCAGTTTGTCAAAAAT-ATAAGCAATCACCATTTGCA
AGTTAATCCTACATGTTTTATGACAAAGC-ACCGTCTGTTATGGTGTCATTAGTTAACCTCA-GATGTTCAGGGCAGATG
GAACTTCATGTATAC------ACAGCAGACAGCATAGTGGCCAAGAGACTGCATCCCGAAAGTTTGTATAGTATGTAATA
ATGACCATTAATTTTATGGAACAATACAAATTTGCATCATCAATTCAAA-GAAATCA---TCATGTAGGGTACAAAAACG
ATCTGTCTACATTTCCTCAGAATACCGAACAAAACTGAGAGCCCGCGTGTCATGTAACCGAGACAGGGAAGACACGC---
--------CGGACAAATTACATCAAAACTCCAGCAGAGTTATCAAGCGCCTTCTTGGCGATCTTGAATTTGCCAGCCAAC
TCCTTCCCTGCGTCTTTGGCGATCACATGCTGTCGGACGAACATCACGATTCCATCTCTCAAGAGCTCGAGCTCCGGGTT
CCCAGCGATACGGGTAAAGACGTTCCACATAAGCGAGTCTTCTTTCTGCATCAAGGTCTCAAACATCATCCTGAAATGCA
TGGTCTTTTTGGGGGTCATCTCCACTGGGTTCGCCAGGTTGACAACCTTCAGTGTTGCTAGCGACAAGGAGAAGTTTGCG
AGCATCTCTGCAACTAGTTTTGCAAGGTTCATGGACCGACTCAACTCCATCTCATCTAGCTCCTTAAAACGGTCCCAGAT
GCAGTACTGCAATGACACCAAAATAAAATAGGAATACACAAATGTTAAAATTGATACAAGTCT-GATATCAATTTATCTT
CATGCACACATGTTGC----ATCTATTAAATATCTACGAGTATATGTTAAGGAAAAGGTATACTTGCTCCGCAAACGAAG
CAGTAAAGCACTAACTTGTGAGGCAGAATACCTTTACTGTAGTCTATAGATATGGAAAATTATAAGAATGCAATGTCATA
CCTGTAAACTGAACTTATGATTCTTATCATGGCTGCATAGCTTGGAGGCAAGGACTGTGTAATATTTATTGAAAGTCTTT
TCTTGCAGACAACAGTCAACAATGACTCTCATAATTTCTCGATCCTGCACAGCAATAGAGAGAAAAAAGTTAAATAATAT
TGACACACGTACACACAGAAAACAGCATCTCGCAGGAAAAAAAACAATGCAGACCTGCTTCCCAGATAGGTCCAGCCTCA
GGATCTTGTCAAAAGCGTCTACATAGTCTTCAGCGCTCATTATGATGCAAAAGATTGCTCTTCGTATATCTGTGTTCATC
CGCTGGGCGGCTGCAAGCTGAACCAGTTTCTGTGCCTCTACAACCTCCTTGCTGATAACTGCTGCAACATCTTCAACATT
GCCTGCTGTGGACGATACATCCCCTGACAACCACCACTGCCCTTTTTTCTCAGGATCCAACAGCTTACTCCATTTTAGCC
CGCGCAAGAGGATATCTTCTGACTTTAGCTGCAGGCAAGCAAAAACAAAACAAATTATTAAATGAGCAGGAAAAGGTTTC
TGTTCAGG------CATCGGGAGATGAAGTTCTGGTACAAACCTTTTGAAGCCACTTTTTTACACGGGTATGCTGTGAAG
GATCCTCTTTGGACCTTTTCTTGTTGTTCTTAATGTCACATATCGTCTCAAGCATAAACTCCATCTGCATGGCAAGTTAA
ACCAGATACAAAACTTAAAACTACTCCAACTTGAATTACTTTTTAAAACAGGTGCAT
>chr1D_681
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---------------------------------------------------------------T----------------
-----------------------TAAAAAAATGGGCAAAATTGGGTCGTAAGAAAGATAAAACTATACTAGCGACAAGGA
GATGAAAGGACCAAATCTCTTTCATGCAGAAGTCGGTAGACGG-TAGTGGGAGCATATGCATATCCCAGGCACGGCACGC
ATGGCAG-------GCTGCTGCAGCGTCCACTTCTATTTTTGGGGCATCAGATTCCACCTCATCCGGCGCCCCCTCCCAG
GTCGATGGAGATTGCTGTAACCAGACGGATTCCCCCACTCG------AATCCAACAACCCACATCAACA-------AAAA
CCCTCAATTCCACCTCGCAAAGGCAGCACAGGAATCATCTGTCTGCACTGCGCTGCAGCTGCAACCTTCAGGTAAACGAC
ATGTGAACCTCCATTCTTGATGCATATTACCCCATTGACGCCTCGCCAATTCGTTTCAGGTCTGGGGCGTGATCTCTCTC
CC----------AAGAGATGGGTGGCGCGGCGTCGAGGCTCGCCGCCCCGATAAAGCACCGGCGGGTGGAGAGGGAGCTG
GACAACAAGGTGGCGGAGGCGCTGCGGGAGCGGGCCAAGGCGAGGACGAAGACGTTCCGGTCGGTGAACAGCATCACCAT
GCGCCTCCCTCGCTTCAAGGACGGCCTCAAGGACATCCGGGACGTCTTCGACCACTACG----GTAAGAGCAGAAGCCAC
CATGCCAAATTTAGCATCCAAAATGGAGCTTCAGAGTCTGCATGCAATATAAAAGCGTGAGGCTTGCGACTTTCAGACAC
GGACTCCAACGGGACGATCGACAACGAGGAGCTGCGGAGCTGCCTGAGCAAGCTCGAGGTGCGGATGTCGGAGAAGGAGG
CCGACGACGTGCACCGCTACTGCGACGTCGACAGCCGCAAGGGTATCCAGTTCCAGGAGTTCGTCGTCCTCATATGCCTT
ATGTACCTGCTCTTCGGCCCCAACGTCACACGCCGGGTAGGGTAGCCAACCAGCCACATCTTCCTCCTGGCTGTCTG-CA
GGAGAATTCTTCTTGGCTTCAACAGTTCACTGATGAGGCTTGTTCTATC-------TTGTTTGTCGTCAGGTTTCCGAGT
TCGAGTCGGAGAAGCTCAACTACATCTTCGACGAGCTCATCGACGCCTTCCTCTTCTTCAACAGGGACGGCGACGGCAAG
GTGACCAGGAAAGACGTCACCCAGAGGATGAACGAGGAGTCTGACCGGGAGAGGACGCCCACCCACATAACCACACAGCT
CTTCAGTCAGTACTCTTGCTGCATGTGCTGGCCCCTTTATTTCT----C-ATGCAC-ATAAACAAGATAATTAAGTCATG
TGTAATTCAAAATAGAACCAAAGTGTGATATGTTC------CGTGTACCTTGTTGCAGAGGAGATGGACCTGAACAAGAA
CGGCAAGGTGAACCTCAAGGAGTTCCTCTTCTCCATGATCAGATGGGCTGGGCTCGAGCCTGAGGAAGGAGATGAAAGCA
ACGACACTTCTCCCTAGTCTATT--TGAGGCCTCTTCTCCTCATCAGTTTGTCAAAATAGATGAACAATCACCAATTGCA
AGTTAATCCTACGTTTT--ATGAGAAGGT-GCCATCTGTTATGGCATCATTAGTTAACCTTG-AATGTTCAGGGCAGATG
GAACTTAATGTATAC------ACAGCAGACAGCATAGTGGCTAAGAGACTGCATCTCCAAAGTTTGTATAGTACGTAATA
ATAACCATTAATTTTATGGAACAATACAAATTTGCATCATCAATTCAAA-GAAAGCATTCTCATGTGGTGTACAAAAACG
ACCTGGCTACATTTCCTCCGAATACCGAACAAAACTGAGAGCCCGCGTGTCACGTAACCGAGACCGGGAAGACACGC---
--------CGGACAAATTACATCAAAACTCCAGCAGAGTTATCAAGCGCCTTCTTGGCGATCTTGAATTTGCCAGCCAGC
TCCTTCCCTGCGTCCTTGGCGATCACATGCTGTCGGACGAACATCACGATTCCATCTCTCAAGAGCTCGAGCTCCGGGTT
CCCGGCGATACGGGTAAAGACGTTCCACATAAGCGAGTCTTCTTTCTGCATCAAGGTCTCGAACATCATCCTGAAATGCA
TGGTCTTTTTGGGGGTCATCTCCACCGGGTTCGCCAGGTTGACAACCTTCAGTGCTGCCAGCGACAGGGAGAAGCTTGCG
AGCATCTCTGCAACTAGTTTGGCAAGGTTCATGGACCGATTCAACTCCATCTCATCTAGCTCCTTAAAACGGTCCCAGAT
GCAGTACTGCAATGACAACAAAATAAAATAGGAATACACAAATGTTAAAATTGACACAAGTCT-GATATCAATTTATCTT
CATGCACACATGTTGC----ATCTATTAAATATCTATGAGTATATGTTAAGGAAAAGGTATACTTGCTCCGCAAACGGAG
CAGTAAAGCACTAACTTGTGAGGCAGAATACCTTTACTGTAGTCTATAGATATGGAAAATTATAAGAATACAATGTCATA
CCTGTAAACTGAACTTATGATTCTTATCATGGCTGCATAGCTTGGAGGCAAGGACTGTGTAATATTTATTGAAAGTCTTT
TCCTGCAGACAACAGTCAACAATGACTCTCATAATTTCTCGATCCTGCACAGCAA--GAGAGAAAAAAGTTAAATAATAT
TGACACACGTACACACAGAAAAAAGCATCTCGCAGGAAAAAA--CAAT-CAGACCTGCTTCCCAGATAGGTCCAGCCTCA
GGATCTTGTCAAAAGCGTCTACATAGTCTTCGGCGCTCATTATGATGCAAAAGATTGCTCTTCGTATATCTGTGTTCATC
CGCTGGGCGGCTGCAAGATGAACCAGTTTCTGTGCCTCTACAACCTCCTTGCTGATAACTGCTGCAACATCTTCAACATT
GCCTGCTGTGGACGATACATCCCCTGACAACCACCACTGCCCTTTTTTCTCAGGATCCAACAGCTTACTCCATTTTAGCC
CGCGCAAGAGGATATCTTCTGACTTTAGCTGCAGGCAAGCAAAAACAGAACAAATTATTAAATGAGCAGGAAAAGGTTTC
TGTTCAGGCATCGGCATCGGGAGATGAAGTTCTGGTACAAACCTTTTGAAGCCACTTTTTTACACGGGTATGCTGTGAAG
GATCCTCTTTGGACCTTTTCTTGTTGTTCTTAATGTCACATATCGTCTCAAGCATAAACTCCATCTGCATGGCAAGTTAA
ACCAGATACAAAACTTAAAACTACTCCAACTTGAATTACTTTTTAAAACAGGTGCAT
>chr7A_1895
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------------CTCTTGC----TGTGCTGCCCCCTCTATTTCA----T-GTGCATAATAAACAAGATAA----GTCATG
TGAAATTCAGAACAAAACCAAAGTGTAATATGTTTC--GTGTGTGTACCTTGTTGTAGAGGAGATGGACCTGAACAAGAA
CGGCAAGGTGAACCTCAAGGAGTTCCTCTTCTCCCTGATCAGATGGGCAGGGCTCAAGCCTGAGGAAGGAGATGAAAGCA
ACGACACTTCTCCGTAGTAGTCCAGTTAGACTTCTTCCCCTCATCAATTTGTCAGAAAT-ATAAGCACTCACCATTCGCA
AGTTAATCCTACGTGTTTTATGACAAAGTGACCGTCTGTTATGGCATCATTGGTTAAACCCCAAATGTTCAGGGCAGATG
GAACTTCATGTATACTCCTACACATCAGACAACATAGTGGCCAAGAGGCTGCATCTCACAAGTTTGCATA----GTAATA
GTAACCATTAATTTTATGGAACGATACAAATTTGCGTCATCAATTCAAA-TAAATCATTACCATGTAGGGTACAAAAACG
ATGTGTCTACATTTCCTCGGAATACTTCAGAAAACTGAGAGCCCACGTGTCACGTAACCGAGACGGGGAAGACACGACCA
----------GACAAATTACATCAAAACTCCAGCAGAGTTATCAAGCGCCTTCTTGGCGATCTTGAATTTGCCAGCCAAC
TACTTCCCTGCGTCCTTGGCGATCACATGCTGTCTGACGAACATCATGATTCCATCTCTCAAGAGCTCGAGCTCTGGGT-
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>SNPs
S-----S----SS--S-----S------S-----------S-------------------------------S------S
S-SSSSS--S-S--SSSSSSSSSSSSSSSSSSSSSSSSSSS---S-S----------------S-S------SS--SS--
S--S--SSSSSSSSSSSSSSSSSSS-----------S------S------------------------------------
--SS--S--------S--------S--SS-S----S---S-------S---------S--S------S-S---S---S--
---SS---S-----------------------------------------S-------S-S--------------S--S-
-----S----SSSSSSSSSSSSS------------------------S----------SSSSS-----------S-----
S-------SSS-S---S--S--------S-S-----SS-------S-------S----S------SSSS------S---S
----S-S--S--------------------S---S-------S-S------S-S--S--SSSSS----------------
-----------------------------S-------S----S-S-----------SS-SSS-S----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------S------S-S-----SS---S-----------------
--------------------------S----S-------------S--S-------------------------------
-------------------------------------------S---S--------------------------------
--------------------------------------------------------------------------------
----------------S---------------------------------------------------------------
-----S--------------------------------------------------------SS----------------
----------------S---------------------------------------------------------------
--------------------------S-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------S----------------------------S---------------S-------
---------------S----------------------S-----------------------------------------
----------------------S---------------------------------------------------------
---------------------------------------S--SSSSSSSSS-SSSSSS-SS-S--SSSSS----------
--S-----------S-SSSS-----------------------------SSSSSSS------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------S-----
S----------S-------------S-----------------------S------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------S-------------S----S---------S--------S-------------------------
-S------------------------------------------------------------------------------
----S----------S-------S------------------S------S----S--S----------S-----------
-----S-----------------S-S-----------------SS----S--------S-------------S--S---S
SSSSSSSS------S--S---------------S----------------------------------------------
---------S----------------------S-----S-----------------------S-S---S-----------
---S-------------------------------------------------------------------S--------
--S-----------------------------------------------------------------------------
--------S-----------S-----------------------------------------------------------
----------------------------S-----------S--------S-SSS-SS-SSSSSS--S------------S
--------------SSSSSS-----------SS------------------S----SS---S-----S-S----------
-------S---S----S-----------SS-SS-SSSSSSS--SS---------------S-------------------
----S-----------------------------S--------------S------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------S--S----------------------
-----------S--------------------------------------------------------------------
------------S-------------------------------------------------------------------
---------------------------------------------------------
>forward_325
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------TCAGCACCGTACCAC
ATCTC---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------
>reverse_3296
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------TATCGACAACGAGGAGCTGC---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------
>forward_511
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------CCAAACAGGTTGTACGCGTT-------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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---------------------------------------------------------
>reverse_4365
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------TCGTGCCACGTAACTGAGAC----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------
>forward_3576
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------AGCTTGTTCTATCCGGGTGC------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------------------------
>reverse_4564
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---CGCGATACGGGTAAAGACGT---------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------
>forward_4403
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------CGGGGAAGAAACCACCT
TGA-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------
>reverse_5612
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------TGGGAGATGAAGTTCTGGTACA-----------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------
